Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6CP6	7548	2022-12-20	2018-03-13	3.6	3.73	—	3.6	0.007	1.09	0.0	0.05	10.80	0.01	2.196	11.02	0.66	5.5	94.2	0.3	-3.06	0.75	0.74	1.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38853	5128	32	0	5	0	0	logfile
✘	6i7T	4428	2022-12-19	2018-11-17	4.61	4.75	4.92	4.6	0.006	1.17	6.0	0.07	13.63	0.01	2.245	7.14	2.54	12.0	87.5	0.4	-4.32	0.74	0.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37004	4682	16	0	0	0	0	logfile
✘	6L53	0836	2022-12-18	2019-10-22	3.63	3.79	—	3.7	0.002	0.67	0.0	0.04	9.71	0.00	2.193	8.74	3.49	9.8	89.9	0.3	-4.90	0.77	0.70	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13991	1935	1	0	0	0	0	logfile
✘	5W9o	8790	2022-12-18	2017-06-23	4.5	4.59	4.45	4.5	0.013	1.66	0.0	0.08	10.49	0.01	1.325	8.19	0.08	3.9	95.4	0.7	1.29	0.73	0.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32958	4257	12	0	0	0	0	logfile
✘	6PUW	20483	2022-12-18	2019-07-18	2.9	3.22	2.94	3.2	0.013	0.78	0.0	0.04	19.88	0.00	0.000	7.63	0.20	2.1	97.9	0.0	-2.24	0.56	0.72	4.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16674	1755	42	108	15	468	0	logfile
✘	6oo4	20145	2022-12-18	2019-04-22	3.3	3.45	3.23	3.5	0.013	1.10	0.0	0.06	9.30	0.01	1.858	3.19	0.00	3.4	96.6	0.0	-2.86	0.47	0.64	4.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18452	2440	8	0	4	0	0	logfile
✔	5W9K	8786	2022-12-18	2017-06-23	4.6	4.70	4.66	4.6	0.013	1.74	2.0	0.08	10.40	0.01	1.342	4.89	0.14	3.7	95.7	0.6	1.72	0.72	0.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32873	4244	12	0	0	0	0	logfile
✘	6oo3	20143	2022-12-18	2019-04-22	2.9	3.02	2.79	3.0	0.014	1.22	0.0	0.06	9.99	0.01	2.495	2.38	0.00	3.1	96.9	0.0	-2.84	0.68	0.85	4.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18236	2404	8	0	4	0	0	logfile
✘	6ADQ	9610	2022-12-22	2018-08-01	3.5	3.66	3.51	3.6	0.018	1.74	0.0	0.07	16.83	0.03	1.170	9.77	0.51	9.8	90.1	0.1	-4.62	0.67	0.81	2.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	48946	6026	44	0	74	0	0	logfile
✘	6SWC	10322	2022-12-19	2019-09-20	3.3	4.36	3.31	3.3	0.013	0.96	0.0	0.05	15.87	0.02	1.823	9.74	0.13	13.4	86.6	0.0	-5.19	0.83	0.72	1.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	70744	4519	48	1593	41	42	0	logfile
✘	6AHR	9626	2022-12-18	2018-08-20	3.92	4.05	—	3.9	0.004	0.96	0.0	0.05	12.84	0.01	1.742	9.89	0.13	10.2	89.6	0.3	-4.23	0.71	0.61	0.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27851	2595	13	341	1	0	0	logfile
✘	6UM2	20816	2022-12-18	2019-10-08	4.32	4.49	—	4.3	0.013	1.78	10.0	0.09	15.32	0.01	1.505	10.33	0.41	6.7	92.9	0.4	-4.93	0.73	0.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13094	1686	3	0	7	0	0	logfile
✘	6PR5	20457	2022-12-18	2019-07-10	3.3	3.71	—	3.6	0.008	0.78	0.0	0.05	22.82	0.00	1.963	13.80	0.71	1.4	98.3	0.3	-3.27	0.76	0.82	2.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10194	960	10	124	6	0	0	logfile
✔	6PXM	20521	2022-12-18	2019-07-26	2.1	2.33	2.32	2.4	0.008	0.71	0.0	0.04	16.03	0.00	2.392	1.60	0.00	0.6	99.4	0.0	-3.44	0.79	0.89	5.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32736	4080	24	0	0	0	0	logfile
✘	5XNM	6742	2022-12-19	2017-05-23	3.2	3.28	—	3.3	0.011	1.67	0.0	0.08	16.06	0.02	1.205	9.94	0.03	2.3	97.7	0.0	-2.60	0.71	0.82	3.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	92842	8712	90	0	486	0	0	logfile
✘	3JC5	6535	2022-12-20	2015-11-24	4.7	5.02	—	4.8	0.009	1.54	5.0	0.06	12.17	0.01	0.300	46.35	0.63	9.4	88.9	1.7	-4.21	0.76	0.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	40041	5039	11	0	0	0	0	logfile
✘	6VAD	21137	2022-12-19	2019-12-17	3.3	3.38	—	3.4	0.014	1.71	1.0	0.08	16.59	0.01	1.974	4.98	1.13	6.2	93.5	0.2	-2.40	0.66	0.64	1.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37613	2321	2	0	0	0	19096	logfile
✘	5W9J	8785	2022-12-18	2017-06-23	4.8	4.91	5.09	4.7	0.013	1.57	0.0	0.07	11.98	0.02	1.881	5.97	0.90	4.0	94.8	1.2	0.53	0.78	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32958	4257	12	0	0	0	0	logfile
✘	6BK8	7109	2022-12-19	2017-11-07	3.3	3.39	—	3.3	0.009	1.23	7.0	0.10	13.57	0.01	1.020	4.74	1.27	6.3	93.2	0.5	-3.63	0.65	0.75	3.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	82745	9975	53	433	249	0	0	logfile
✘	5Z58	6891	2022-12-19	2018-01-17	4.9	5.11	—	4.8	0.011	1.48	31.0	0.10	14.17	0.01	1.766	28.33	4.95	6.4	92.4	1.2	-2.65	0.58	0.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	94673	12915	51	390	12	0	0	logfile

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