Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6S2E	10088	2022-04-05	2019-06-20	4.2	4.38	4.22	4.2	0.009	1.53	0.0	0.13	14.14	0.01	2.218	7.73	1.88	4.7	95.2	0.1	-1.45	0.81	0.75	—	4.2	0.004	0.73	0.0	0.04	13.40	0.00	2.088	18.11	0.00	4.1	95.9	0.0	-0.02	1.28	0.81	0.76	—	12459	1539	4	0	1	0	0	logfile
✔	6WDB	21630	2022-04-13	2020-03-31	4.0	4.30	5.11	4.1	0.006	0.99	0.0	0.08	13.33	0.01	2.211	11.43	0.77	11.9	86.2	1.9	-4.97	0.78	0.72	—	4.1	0.007	0.92	2.0	0.04	17.49	0.01	1.940	38.51	1.20	13.5	86.3	0.2	-3.34	0.89	0.82	0.77	—	150149	6024	59	4807	0	0	0	logfile
✔	6SKN	10229	2022-04-08	2019-08-16	4.5	4.78	4.35	4.5	0.004	0.61	0.0	0.04	12.96	0.00	1.979	8.55	0.18	1.6	98.4	0.0	-1.15	0.58	0.71	—	4.5	0.004	0.78	0.0	0.05	13.59	0.01	2.054	17.26	0.18	3.1	96.9	0.0	0.50	1.17	0.60	0.83	—	30984	3960	18	0	0	0	0	logfile
✔	6WDC	21631	2022-04-13	2020-03-31	4.2	4.07	4.55	3.9	0.006	1.01	0.0	0.08	13.38	0.01	2.262	11.85	1.14	13.3	84.6	2.1	-5.10	0.77	0.73	—	3.9	0.005	0.82	0.0	0.04	16.57	0.01	1.982	31.02	0.02	13.2	86.7	0.1	-3.37	0.84	0.80	0.76	—	150149	6024	59	4807	0	0	0	logfile
✘	6VM3	21237	2022-04-05	2020-01-27	3.07	3.76	3.02	3.5	0.025	2.33	0.0	0.12	15.81	0.03	2.282	5.90	0.92	3.1	96.9	0.0	1.08	0.80	0.86	3.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15180	1810	15	0	15	0	0	logfile
✔	6Y5V	10704	2022-04-05	2020-02-25	4.08	4.18	4.07	4.2	0.004	0.66	0.0	0.04	11.31	0.00	2.232	7.24	0.29	4.0	96.0	0.0	-2.25	0.65	0.84	—	4.2	0.003	0.67	0.0	0.04	12.68	0.00	2.166	10.45	0.00	4.1	95.9	0.0	0.92	2.46	0.65	0.83	—	13400	1758	6	0	8	0	0	logfile
✔	6VoG	21263	2022-04-07	2020-01-30	4.35	4.16	—	4.1	0.007	1.08	0.0	0.06	16.25	0.01	2.242	15.25	0.49	8.8	91.1	0.1	-3.94	0.75	0.76	—	4.1	0.003	0.80	0.0	0.05	14.83	0.01	2.079	22.17	0.00	6.9	93.1	0.0	-1.45	0.88	0.77	0.78	—	27137	3562	14	0	5	0	0	logfile
✔	6TQE	10549	2022-04-05	2019-12-16	4.3	4.14	—	4.2	0.007	1.04	0.0	0.06	14.59	0.01	2.077	2.78	0.76	8.6	91.4	0.0	-6.13	0.76	0.89	—	4.2	0.002	0.61	0.0	0.04	13.71	0.00	2.005	5.11	0.19	5.1	94.9	0.0	-2.70	1.27	0.75	0.88	—	10076	1268	4	0	4	0	0	logfile
✔	7JK6	22363	2022-04-05	2020-07-27	4.0	4.53	3.98	4.0	0.008	1.27	0.0	0.07	14.68	0.01	1.967	5.90	0.24	4.4	95.6	0.0	-2.89	0.87	0.78	—	4.0	0.004	0.80	0.0	0.04	16.08	0.00	1.859	16.56	0.24	4.0	96.0	0.0	0.81	1.19	0.88	0.80	—	15161	1887	9	0	6	0	0	logfile
✔	7JPS	22421	2022-04-05	2020-08-09	4.4	5.22	—	3.8	0.006	1.19	1.0	0.06	16.52	0.01	2.102	4.24	0.00	3.1	96.9	0.0	-2.45	0.67	0.46	—	3.8	0.004	0.72	0.0	0.04	16.33	0.00	1.876	19.92	0.00	5.4	94.6	0.0	-0.52	1.56	0.84	0.72	—	16352	1932	11	26	7	0	0	logfile
✔	6WDi	21637	2022-04-13	2020-03-31	4.0	4.30	4.78	4.1	0.006	0.98	0.0	0.08	13.16	0.01	2.280	9.88	0.49	12.5	85.9	1.6	-4.84	0.77	0.71	—	4.1	0.006	0.84	1.0	0.04	17.26	0.01	1.956	30.20	0.76	11.7	88.2	0.1	-3.28	0.86	0.81	0.75	—	149628	5954	59	4807	0	0	0	logfile
✘	6UD3	20731	2022-04-05	2019-09-18	3.5	4.06	3.46	3.8	0.014	1.59	0.0	0.10	11.86	0.01	2.293	7.45	0.00	4.6	95.4	0.0	-1.90	0.79	0.78	1.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14346	1765	10	0	6	0	0	logfile
✘	6YMY	10848	2022-04-05	2020-04-10	3.41	3.81	3.50	3.7	0.008	1.25	0.0	0.06	16.55	0.01	0.424	7.43	0.27	8.9	91.0	0.1	-6.00	0.68	0.82	2.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14612	1766	19	0	16	0	0	logfile
✘	6TU7	10590	2022-04-07	2020-01-03	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	logfile
✔	6VLR	21232	2022-04-06	2020-01-24	4.42	4.62	4.43	4.4	0.021	1.74	0.0	0.10	10.31	0.01	2.046	1.26	0.13	2.6	97.2	0.2	1.05	0.72	0.80	—	4.4	0.003	0.67	0.0	0.04	12.40	0.00	2.141	12.51	0.04	4.4	95.5	0.1	0.68	2.73	0.73	0.83	—	21768	2611	37	0	92	0	0	logfile
✘	6VFi	21173	2022-04-04	2020-01-05	4.54	4.63	4.96	4.5	0.018	1.47	0.0	0.09	10.93	0.01	2.449	0.53	0.00	1.3	98.7	0.0	1.21	0.80	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	58488	7560	48	0	0	0	0	logfile
✔	6VN0	21246	2022-04-06	2020-01-29	4.25	4.57	4.28	4.5	0.018	1.73	0.0	0.09	10.70	0.01	2.270	1.75	0.15	2.9	96.5	0.6	0.70	0.74	0.78	—	4.5	0.003	0.74	0.0	0.05	12.73	0.00	2.085	12.50	0.00	7.1	92.5	0.3	-0.71	1.83	0.74	0.80	—	19962	2364	51	0	105	0	0	logfile
✘	6XZG	10662	2022-04-05	2020-02-04	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	logfile
✔	6ZJL	11235	2022-04-08	2020-06-29	4.3	4.31	—	4.3	0.021	2.33	37.0	1.41	15.36	0.02	2.162	1.03	2.43	9.6	87.6	2.9	-4.76	0.55	0.77	—	4.3	0.014	2.36	3.0	0.44	14.44	0.01	1.559	17.47	0.03	5.6	94.1	0.2	-0.81	2.04	0.56	0.79	—	36057	4646	20	0	10	0	0	logfile
✔	6ZiY	11231	2022-04-08	2020-06-26	4.25	4.27	—	4.2	0.021	2.37	37.0	1.39	15.92	0.02	1.919	1.32	3.34	9.9	86.7	3.4	-4.76	0.54	0.76	—	4.2	0.013	2.31	0.0	0.44	14.53	0.01	2.151	12.79	0.00	5.1	94.7	0.2	-0.36	2.07	0.55	0.78	—	36101	4646	20	0	11	0	0	logfile

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