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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6K72 | 9841 | 2022-12-16 | 2019-06-05 | 4.6 | 4.68 | — | 4.6 | 0.006 | 1.30 | 0.0 | 0.07 | 12.85 | 0.01 | 2.168 | 10.62 | 1.37 | 14.0 | 85.9 | 0.1 | -5.39 | 0.74 | 0.72 | — | 4.6 | 0.003 | 0.83 | 0.0 | 0.05 | 13.14 | 0.00 | 2.139 | 18.09 | 0.03 | 10.9 | 89.1 | 0.0 | -3.05 | 0.76 | 0.74 | 0.72 | — | 32731 | 4264 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 5ACo | 3121 | 2022-12-14 | 2015-08-17 | 4.36 | 4.52 | — | 4.3 | 0.012 | 1.91 | 3.0 | 0.11 | 10.21 | 0.02 | 1.986 | 10.87 | 0.29 | 9.1 | 88.9 | 1.9 | -2.40 | 0.70 | 0.68 | — | 4.3 | 0.005 | 0.79 | 0.0 | 0.05 | 11.29 | 0.00 | 2.136 | 13.50 | 0.00 | 7.9 | 91.5 | 0.6 | -1.09 | 1.61 | 0.82 | 0.84 | — | 21297 | 2415 | 69 | 0 | 192 | 0 | 0 | logfile |
✔ | 6K71 | 9840 | 2022-12-16 | 2019-06-05 | 4.3 | 4.38 | — | 4.3 | 0.008 | 1.40 | 0.0 | 0.07 | 12.85 | 0.01 | 1.563 | 10.70 | 1.32 | 15.3 | 84.6 | 0.0 | -5.50 | 0.66 | 0.64 | — | 4.3 | 0.004 | 0.86 | 0.0 | 0.05 | 13.14 | 0.01 | 2.078 | 18.28 | 0.03 | 13.3 | 86.7 | 0.0 | -3.12 | 0.71 | 0.66 | 0.64 | — | 32589 | 4244 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 6D6V | 7821 | 2022-12-13 | 2018-04-22 | 4.8 | 5.14 | — | 4.6 | 0.013 | 1.70 | 1.0 | 0.08 | 19.43 | 0.01 | 1.189 | 25.73 | 0.97 | 15.8 | 83.5 | 0.7 | -4.28 | 0.84 | 0.74 | — | 4.6 | 0.003 | 0.76 | 0.0 | 0.04 | 18.80 | 0.00 | 2.097 | 23.86 | 0.00 | 12.9 | 87.1 | 0.0 | -1.94 | 1.58 | 0.86 | 0.78 | — | 17317 | 1535 | 9 | 178 | 158 | 0 | 0 | logfile |
✔ | 6CNC | 7531 | 2022-12-22 | 2018-03-08 | 4.1 | 4.33 | — | 4.2 | 0.007 | 1.15 | 6.0 | 0.06 | 13.92 | 0.01 | 1.869 | 33.65 | 0.60 | 16.8 | 81.7 | 1.5 | -5.05 | 0.74 | 0.69 | — | 4.2 | 0.003 | 0.83 | 0.0 | 0.05 | 15.32 | 0.01 | 2.140 | 17.57 | 0.02 | 11.2 | 87.8 | 1.0 | -2.37 | 2.51 | 0.82 | 0.81 | — | 47836 | 5695 | 27 | 112 | 69 | 0 | 0 | logfile |
✔ | 3JCA | 6441 | 2022-12-12 | 2015-11-24 | 4.8 | 4.59 | — | 4.5 | 0.012 | 1.49 | 0.0 | 0.07 | 18.62 | 0.01 | 2.370 | 3.54 | 0.00 | 7.2 | 92.8 | 0.0 | -1.87 | 0.75 | 0.75 | — | 4.5 | 0.003 | 0.68 | 0.0 | 0.04 | 19.69 | 0.01 | 2.009 | 16.11 | 0.19 | 5.4 | 94.6 | 0.0 | -0.35 | 2.48 | 0.76 | 0.77 | — | 11466 | 1226 | 16 | 80 | 4 | 0 | 0 | logfile |
✔ | 6KiZ | 0695 | 2022-12-16 | 2019-07-20 | 4.5 | 4.53 | — | 3.5 | 0.007 | 0.86 | 0.0 | 0.05 | 23.17 | 0.01 | 2.253 | 5.98 | 0.00 | 6.7 | 93.3 | 0.0 | -3.09 | 0.88 | 0.83 | — | 3.5 | 0.004 | 0.63 | 0.0 | 0.04 | 23.28 | 0.00 | 2.146 | 14.46 | 0.00 | 6.3 | 93.7 | 0.0 | -1.03 | 0.77 | 0.89 | 0.84 | — | 19889 | 1762 | 15 | 290 | 1 | 0 | 0 | logfile |
✔ | 6DBT | 7849 | 2022-12-14 | 2018-05-03 | 4.3 | 4.48 | — | 4.3 | 0.005 | 0.82 | 0.0 | 0.04 | 24.07 | 0.01 | 1.860 | 22.20 | 0.12 | 9.2 | 90.6 | 0.2 | -4.16 | 0.85 | 0.82 | — | 4.3 | 0.003 | 0.72 | 0.0 | 0.04 | 21.61 | 0.00 | 1.845 | 15.81 | 0.06 | 6.8 | 93.1 | 0.1 | -1.10 | 1.74 | 0.85 | 0.83 | — | 19896 | 1930 | 10 | 222 | 6 | 0 | 0 | logfile |
✔ | 6oT2 | 20192 | 2022-12-16 | 2019-05-02 | 4.1 | 4.25 | 4.02 | 4.1 | 0.009 | 0.87 | 0.0 | 0.05 | 8.41 | 0.01 | 2.066 | 6.19 | 0.00 | 7.3 | 92.7 | 0.0 | -2.26 | 0.71 | 0.76 | — | 4.1 | 0.002 | 0.52 | 0.0 | 0.03 | 10.42 | 0.00 | 2.135 | 7.27 | 0.00 | 5.1 | 94.9 | 0.0 | 1.85 | 1.72 | 0.71 | 0.76 | — | 32311 | 2444 | 4 | 0 | 56 | 0 | 14975 | logfile |
✔ | 6MZC | 9298 | 2022-12-14 | 2018-11-05 | 4.5 | 4.36 | 4.48 | 4.3 | 0.010 | 1.33 | 1.0 | 0.07 | 10.66 | 0.01 | 2.207 | 12.14 | 0.72 | 14.4 | 85.4 | 0.2 | -4.53 | 0.75 | 0.74 | — | 4.3 | 0.004 | 0.91 | 0.0 | 0.05 | 12.84 | 0.01 | 2.123 | 23.11 | 0.05 | 12.0 | 87.9 | 0.0 | -2.00 | 1.10 | 0.75 | 0.73 | — | 21254 | 2493 | 10 | 0 | 346 | 0 | 0 | logfile |
✔ | 6CNF | 7533 | 2022-12-22 | 2018-03-08 | 4.5 | 4.70 | — | 4.4 | 0.006 | 1.16 | 9.0 | 0.06 | 13.86 | 0.01 | 1.905 | 40.33 | 0.74 | 17.9 | 80.5 | 1.6 | -5.23 | 0.74 | 0.65 | — | 4.4 | 0.004 | 0.88 | 0.0 | 0.05 | 15.16 | 0.01 | 2.024 | 23.60 | 0.00 | 12.3 | 86.8 | 0.9 | -2.74 | 1.48 | 0.85 | 0.80 | — | 47675 | 5695 | 27 | 104 | 69 | 0 | 0 | logfile |
✔ | 6PQY | 20456 | 2022-12-12 | 2019-07-10 | 4.2 | 5.01 | — | 4.8 | 0.007 | 0.99 | 0.0 | 0.06 | 21.79 | 0.01 | 2.225 | 25.21 | 0.49 | 6.8 | 92.5 | 0.7 | -4.46 | 0.80 | 0.78 | — | 4.8 | 0.004 | 0.72 | 0.0 | 0.04 | 21.47 | 0.00 | 2.143 | 20.58 | 0.00 | 7.5 | 92.5 | 0.0 | -1.24 | 0.86 | 0.79 | 0.77 | — | 8690 | 920 | 6 | 64 | 0 | 0 | 0 | logfile |
✔ | 6JXA | 9892 | 2022-12-13 | 2019-04-23 | 4.3 | 4.65 | — | 4.2 | 0.017 | 1.81 | 3.0 | 0.10 | 9.08 | 0.01 | 1.926 | 29.80 | 2.04 | 12.2 | 79.3 | 8.5 | -2.72 | 0.49 | 0.42 | — | 4.2 | 0.003 | 0.90 | 0.0 | 0.04 | 11.48 | 0.00 | 2.173 | 16.33 | 0.00 | 15.8 | 81.5 | 2.7 | -1.63 | 0.94 | 0.65 | 0.62 | — | 14100 | 2244 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6BPQ | 7127 | 2022-12-14 | 2017-11-25 | 4.1 | 4.26 | 4.18 | 4.2 | 0.007 | 0.92 | 0.0 | 0.05 | 9.83 | 0.01 | 2.338 | 4.30 | 0.00 | 3.9 | 96.1 | 0.0 | -3.30 | 0.68 | 0.78 | — | 4.2 | 0.003 | 0.59 | 0.0 | 0.04 | 11.73 | 0.00 | 2.250 | 8.01 | 0.00 | 5.1 | 94.9 | 0.0 | 1.57 | 0.63 | 0.68 | 0.77 | — | 22404 | 3072 | 4 | 0 | 268 | 0 | 0 | logfile |
✔ | 5A6E | 3062 | 2022-12-12 | 2015-06-25 | 4.5 | 6.76 | — | 5.1 | 0.010 | 3.73 | 0.0 | 0.05 | 15.55 | 0.01 | 2.112 | 8.77 | 3.19 | 11.1 | 88.8 | 0.2 | -5.00 | 0.36 | 0.56 | — | 4.8 | 0.003 | 0.58 | 0.0 | 0.03 | 10.50 | 0.00 | 1.994 | 10.27 | 0.00 | 6.4 | 93.6 | 0.0 | -0.83 | 1.50 | 0.40 | 0.73 | — | 11093 | 634 | 4 | 0 | 182 | 0 | 5102 | logfile |
✔ | 6D83 | 7453 | 2022-12-13 | 2018-04-25 | 4.27 | 4.38 | — | 4.3 | 0.005 | 0.92 | 0.0 | 0.05 | 11.34 | 0.01 | 1.904 | 6.14 | 0.05 | 5.0 | 94.9 | 0.0 | -4.30 | 0.80 | 0.76 | — | 4.3 | 0.003 | 0.76 | 0.0 | 0.05 | 14.13 | 0.00 | 1.957 | 18.02 | 0.00 | 4.3 | 95.7 | 0.0 | -0.99 | 1.07 | 0.81 | 0.79 | — | 16588 | 2063 | 10 | 0 | 4 | 0 | 0 | logfile |
✔ | 6NR4 | 0489 | 2022-12-15 | 2019-01-22 | 4.3 | 4.39 | 4.24 | 4.3 | 0.006 | 0.93 | 0.0 | 0.05 | 9.96 | 0.01 | 2.319 | 3.34 | 0.39 | 4.7 | 95.3 | 0.0 | -3.24 | 0.60 | 0.77 | — | 4.3 | 0.002 | 0.58 | 0.0 | 0.04 | 11.84 | 0.00 | 2.250 | 7.43 | 0.00 | 3.7 | 96.3 | 0.0 | 2.39 | 0.79 | 0.61 | 0.78 | — | 23264 | 3036 | 4 | 0 | 180 | 0 | 0 | logfile |
✔ | 5FUU | 3308 | 2022-12-14 | 2016-01-29 | 4.19 | 4.30 | — | 4.2 | 0.013 | 1.78 | 3.0 | 0.11 | 10.98 | 0.02 | 1.862 | 17.54 | 1.20 | 6.2 | 92.2 | 1.7 | -2.38 | 0.69 | 0.72 | — | 4.2 | 0.003 | 0.77 | 0.0 | 0.05 | 12.03 | 0.00 | 2.070 | 12.68 | 0.05 | 6.6 | 92.9 | 0.5 | -1.02 | 0.94 | 0.76 | 0.82 | — | 20735 | 2281 | 70 | 0 | 213 | 0 | 0 | logfile |
✔ | 6oUA | 20200 | 2022-12-11 | 2019-05-04 | 4.18 | 4.32 | — | 4.3 | 0.008 | 1.37 | 1.0 | 0.07 | 13.97 | 0.01 | 2.294 | 7.13 | 2.35 | 17.4 | 82.3 | 0.3 | -5.89 | 0.72 | 0.79 | — | 4.3 | 0.003 | 0.85 | 0.0 | 0.05 | 14.27 | 0.00 | 2.161 | 9.69 | 0.00 | 11.3 | 88.7 | 0.0 | -1.80 | 1.90 | 0.71 | 0.75 | — | 5208 | 637 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SH4 | 10193 | 2022-12-13 | 2019-08-05 | 4.4 | 4.48 | — | 4.3 | 0.005 | 1.01 | 0.0 | 0.07 | 5.13 | 0.00 | 2.405 | 2.99 | 0.00 | 6.8 | 92.4 | 0.8 | -2.94 | 0.72 | 0.77 | — | 4.3 | 0.003 | 0.76 | 0.0 | 0.04 | 5.13 | 0.00 | 2.207 | 2.29 | 0.00 | 8.6 | 91.1 | 0.3 | -0.62 | 2.29 | 0.74 | 0.83 | — | 12957 | 2632 | 7 | 0 | 0 | 0 | 0 | logfile |