Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6K72	9841	2022-12-16	2019-06-05	4.6	4.68	—	4.6	0.006	1.30	0.0	0.07	12.85	0.01	2.168	10.62	1.37	14.0	85.9	0.1	-5.39	0.74	0.72	—	4.6	0.003	0.83	0.0	0.05	13.14	0.00	2.139	18.09	0.03	10.9	89.1	0.0	-3.05	0.76	0.74	0.72	—	32731	4264	14	0	0	0	0	logfile
✔	5ACo	3121	2022-12-14	2015-08-17	4.36	4.52	—	4.3	0.012	1.91	3.0	0.11	10.21	0.02	1.986	10.87	0.29	9.1	88.9	1.9	-2.40	0.70	0.68	—	4.3	0.005	0.79	0.0	0.05	11.29	0.00	2.136	13.50	0.00	7.9	91.5	0.6	-1.09	1.61	0.82	0.84	—	21297	2415	69	0	192	0	0	logfile
✔	6K71	9840	2022-12-16	2019-06-05	4.3	4.38	—	4.3	0.008	1.40	0.0	0.07	12.85	0.01	1.563	10.70	1.32	15.3	84.6	0.0	-5.50	0.66	0.64	—	4.3	0.004	0.86	0.0	0.05	13.14	0.01	2.078	18.28	0.03	13.3	86.7	0.0	-3.12	0.71	0.66	0.64	—	32589	4244	13	0	0	0	0	logfile
✔	6D6V	7821	2022-12-13	2018-04-22	4.8	5.14	—	4.6	0.013	1.70	1.0	0.08	19.43	0.01	1.189	25.73	0.97	15.8	83.5	0.7	-4.28	0.84	0.74	—	4.6	0.003	0.76	0.0	0.04	18.80	0.00	2.097	23.86	0.00	12.9	87.1	0.0	-1.94	1.58	0.86	0.78	—	17317	1535	9	178	158	0	0	logfile
✔	6CNC	7531	2022-12-22	2018-03-08	4.1	4.33	—	4.2	0.007	1.15	6.0	0.06	13.92	0.01	1.869	33.65	0.60	16.8	81.7	1.5	-5.05	0.74	0.69	—	4.2	0.003	0.83	0.0	0.05	15.32	0.01	2.140	17.57	0.02	11.2	87.8	1.0	-2.37	2.51	0.82	0.81	—	47836	5695	27	112	69	0	0	logfile
✔	3JCA	6441	2022-12-12	2015-11-24	4.8	4.59	—	4.5	0.012	1.49	0.0	0.07	18.62	0.01	2.370	3.54	0.00	7.2	92.8	0.0	-1.87	0.75	0.75	—	4.5	0.003	0.68	0.0	0.04	19.69	0.01	2.009	16.11	0.19	5.4	94.6	0.0	-0.35	2.48	0.76	0.77	—	11466	1226	16	80	4	0	0	logfile
✔	6KiZ	0695	2022-12-16	2019-07-20	4.5	4.53	—	3.5	0.007	0.86	0.0	0.05	23.17	0.01	2.253	5.98	0.00	6.7	93.3	0.0	-3.09	0.88	0.83	—	3.5	0.004	0.63	0.0	0.04	23.28	0.00	2.146	14.46	0.00	6.3	93.7	0.0	-1.03	0.77	0.89	0.84	—	19889	1762	15	290	1	0	0	logfile
✔	6DBT	7849	2022-12-14	2018-05-03	4.3	4.48	—	4.3	0.005	0.82	0.0	0.04	24.07	0.01	1.860	22.20	0.12	9.2	90.6	0.2	-4.16	0.85	0.82	—	4.3	0.003	0.72	0.0	0.04	21.61	0.00	1.845	15.81	0.06	6.8	93.1	0.1	-1.10	1.74	0.85	0.83	—	19896	1930	10	222	6	0	0	logfile
✔	6oT2	20192	2022-12-16	2019-05-02	4.1	4.25	4.02	4.1	0.009	0.87	0.0	0.05	8.41	0.01	2.066	6.19	0.00	7.3	92.7	0.0	-2.26	0.71	0.76	—	4.1	0.002	0.52	0.0	0.03	10.42	0.00	2.135	7.27	0.00	5.1	94.9	0.0	1.85	1.72	0.71	0.76	—	32311	2444	4	0	56	0	14975	logfile
✔	6MZC	9298	2022-12-14	2018-11-05	4.5	4.36	4.48	4.3	0.010	1.33	1.0	0.07	10.66	0.01	2.207	12.14	0.72	14.4	85.4	0.2	-4.53	0.75	0.74	—	4.3	0.004	0.91	0.0	0.05	12.84	0.01	2.123	23.11	0.05	12.0	87.9	0.0	-2.00	1.10	0.75	0.73	—	21254	2493	10	0	346	0	0	logfile
✔	6CNF	7533	2022-12-22	2018-03-08	4.5	4.70	—	4.4	0.006	1.16	9.0	0.06	13.86	0.01	1.905	40.33	0.74	17.9	80.5	1.6	-5.23	0.74	0.65	—	4.4	0.004	0.88	0.0	0.05	15.16	0.01	2.024	23.60	0.00	12.3	86.8	0.9	-2.74	1.48	0.85	0.80	—	47675	5695	27	104	69	0	0	logfile
✔	6PQY	20456	2022-12-12	2019-07-10	4.2	5.01	—	4.8	0.007	0.99	0.0	0.06	21.79	0.01	2.225	25.21	0.49	6.8	92.5	0.7	-4.46	0.80	0.78	—	4.8	0.004	0.72	0.0	0.04	21.47	0.00	2.143	20.58	0.00	7.5	92.5	0.0	-1.24	0.86	0.79	0.77	—	8690	920	6	64	0	0	0	logfile
✔	6JXA	9892	2022-12-13	2019-04-23	4.3	4.65	—	4.2	0.017	1.81	3.0	0.10	9.08	0.01	1.926	29.80	2.04	12.2	79.3	8.5	-2.72	0.49	0.42	—	4.2	0.003	0.90	0.0	0.04	11.48	0.00	2.173	16.33	0.00	15.8	81.5	2.7	-1.63	0.94	0.65	0.62	—	14100	2244	1	0	0	0	0	logfile
✔	6BPQ	7127	2022-12-14	2017-11-25	4.1	4.26	4.18	4.2	0.007	0.92	0.0	0.05	9.83	0.01	2.338	4.30	0.00	3.9	96.1	0.0	-3.30	0.68	0.78	—	4.2	0.003	0.59	0.0	0.04	11.73	0.00	2.250	8.01	0.00	5.1	94.9	0.0	1.57	0.63	0.68	0.77	—	22404	3072	4	0	268	0	0	logfile
✔	5A6E	3062	2022-12-12	2015-06-25	4.5	6.76	—	5.1	0.010	3.73	0.0	0.05	15.55	0.01	2.112	8.77	3.19	11.1	88.8	0.2	-5.00	0.36	0.56	—	4.8	0.003	0.58	0.0	0.03	10.50	0.00	1.994	10.27	0.00	6.4	93.6	0.0	-0.83	1.50	0.40	0.73	—	11093	634	4	0	182	0	5102	logfile
✔	6D83	7453	2022-12-13	2018-04-25	4.27	4.38	—	4.3	0.005	0.92	0.0	0.05	11.34	0.01	1.904	6.14	0.05	5.0	94.9	0.0	-4.30	0.80	0.76	—	4.3	0.003	0.76	0.0	0.05	14.13	0.00	1.957	18.02	0.00	4.3	95.7	0.0	-0.99	1.07	0.81	0.79	—	16588	2063	10	0	4	0	0	logfile
✔	6NR4	0489	2022-12-15	2019-01-22	4.3	4.39	4.24	4.3	0.006	0.93	0.0	0.05	9.96	0.01	2.319	3.34	0.39	4.7	95.3	0.0	-3.24	0.60	0.77	—	4.3	0.002	0.58	0.0	0.04	11.84	0.00	2.250	7.43	0.00	3.7	96.3	0.0	2.39	0.79	0.61	0.78	—	23264	3036	4	0	180	0	0	logfile
✔	5FUU	3308	2022-12-14	2016-01-29	4.19	4.30	—	4.2	0.013	1.78	3.0	0.11	10.98	0.02	1.862	17.54	1.20	6.2	92.2	1.7	-2.38	0.69	0.72	—	4.2	0.003	0.77	0.0	0.05	12.03	0.00	2.070	12.68	0.05	6.6	92.9	0.5	-1.02	0.94	0.76	0.82	—	20735	2281	70	0	213	0	0	logfile
✔	6oUA	20200	2022-12-11	2019-05-04	4.18	4.32	—	4.3	0.008	1.37	1.0	0.07	13.97	0.01	2.294	7.13	2.35	17.4	82.3	0.3	-5.89	0.72	0.79	—	4.3	0.003	0.85	0.0	0.05	14.27	0.00	2.161	9.69	0.00	11.3	88.7	0.0	-1.80	1.90	0.71	0.75	—	5208	637	3	0	0	0	0	logfile
✔	6SH4	10193	2022-12-13	2019-08-05	4.4	4.48	—	4.3	0.005	1.01	0.0	0.07	5.13	0.00	2.405	2.99	0.00	6.8	92.4	0.8	-2.94	0.72	0.77	—	4.3	0.003	0.76	0.0	0.04	5.13	0.00	2.207	2.29	0.00	8.6	91.1	0.3	-0.62	2.29	0.74	0.83	—	12957	2632	7	0	0	0	0	logfile

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