Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7E0i	30933	2023-04-20	2021-01-28	3.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8033	677	6	0	58	0	0	logfile
✘	8AYH	15713	2023-04-25	2022-09-02	3.35	3.45	3.40	3.4	0.007	0.91	0.0	0.06	14.44	0.01	2.114	5.00	0.65	6.5	93.4	0.1	-4.12	0.83	0.85	2.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19109	2414	5	0	2	0	0	logfile
✔	7WTH	32786	2023-04-19	2022-02-04	4.3	3.63	—	4.0	0.004	0.78	0.0	0.05	12.97	0.01	2.169	9.08	0.85	8.0	92.0	0.0	-2.03	0.69	0.70	—	3.8	0.004	0.77	0.0	0.05	13.51	0.00	2.154	11.58	0.00	10.6	89.2	0.2	-2.44	1.20	0.69	0.72	—	3257	421	3	0	0	0	0	logfile
✘	6PPL	20442	2023-04-20	2019-07-08	3.02	3.14	—	3.1	0.010	0.99	0.0	0.25	14.17	0.01	1.917	3.20	0.23	2.7	97.3	0.0	-6.00	0.74	0.86	4.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8155	980	6	0	4	0	0	logfile
✘	7EWL	31351	2023-04-22	2021-05-25	3.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13784	994	2	0	0	0	6756	logfile
✘	6K0A	30036	2023-04-26	2019-05-05	4.6	4.81	—	4.5	0.003	0.70	0.0	0.04	15.45	0.01	2.316	2.94	0.83	5.3	94.7	0.0	-4.65	0.80	0.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22276	1364	14	516	2	0	0	logfile
✔	3JCL	6526	2023-04-27	2015-12-21	4.0	4.03	—	4.0	0.018	1.83	9.0	0.09	9.75	0.01	2.379	2.74	0.00	5.2	94.3	0.6	-0.72	0.71	0.74	—	4.0	0.003	0.74	0.0	0.04	14.59	0.00	2.114	12.67	0.44	7.2	92.7	0.1	-0.57	1.77	0.70	0.70	—	24822	3201	3	0	0	0	0	logfile
✔	6ZD0	11172	2023-04-20	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	10.05	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	4.5	0.003	0.78	0.0	0.04	5.38	0.00	2.341	5.89	0.00	15.0	84.6	0.4	-4.68	2.32	0.61	0.58	—	7962	1611	6	0	0	0	0	logfile
✔	7JW0	22512	2023-04-27	2020-08-24	4.3	4.63	4.41	4.4	0.010	1.54	6.0	0.10	8.01	0.01	2.527	0.37	0.00	2.3	97.5	0.1	1.05	0.81	0.71	—	4.4	0.003	0.64	0.0	0.05	9.97	0.00	2.180	5.50	0.00	3.4	96.6	0.0	0.41	1.28	0.85	0.79	—	26251	4314	27	0	69	0	0	logfile
✘	6RKo	4908	2023-04-20	2019-04-30	2.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7289	875	8	0	9	31	0	logfile
✔	6KS7	0759	2023-04-22	2019-08-23	4.62	4.57	—	4.5	0.001	0.39	0.0	0.04	7.11	0.00	2.241	5.72	0.00	4.3	95.7	0.0	-3.50	0.70	0.62	—	4.5	0.003	0.70	0.0	0.04	12.04	0.00	2.131	14.80	0.03	3.3	96.6	0.1	-0.06	1.85	0.74	0.67	—	62022	8131	16	0	0	0	0	logfile
✘	6Z5S	11081	2023-04-26	2020-05-27	2.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22794	2214	66	0	91	10	0	logfile
✔	6HZ5	0311	2023-04-24	2018-10-22	4.2	4.28	4.18	4.3	0.009	0.97	0.0	0.05	14.60	0.01	1.960	2.94	0.70	2.7	97.3	0.0	-0.55	0.79	0.76	—	4.2	0.003	0.58	0.0	0.04	14.66	0.00	1.803	11.78	0.05	4.9	95.1	0.0	0.00	1.88	0.81	0.78	—	67582	4120	26	6	12	0	33368	logfile
✔	6ZFo	11184	2023-04-24	2020-06-17	4.4	4.43	—	4.4	0.003	0.56	0.0	0.04	10.41	0.00	2.157	3.58	1.30	4.5	95.5	0.0	-0.66	0.49	0.51	—	4.4	0.003	0.60	0.0	0.04	11.46	0.00	1.946	11.31	0.00	5.3	94.7	0.0	-1.00	1.56	0.53	0.59	—	18988	1252	8	0	2	0	9310	logfile
✔	6PVL	20492	2023-04-25	2019-07-21	4.4	4.48	—	4.4	0.008	1.13	0.0	0.06	11.67	0.01	2.202	6.80	1.39	15.4	84.2	0.5	-5.53	0.69	0.81	—	4.4	0.004	0.85	0.0	0.04	13.22	0.00	2.071	16.18	0.00	12.8	87.0	0.2	-1.56	1.50	0.70	0.82	—	21006	2576	5	0	2	0	0	logfile
✔	7KY9	23072	2023-04-21	2020-12-07	4.05	4.67	—	4.5	0.004	1.14	0.0	0.05	13.33	0.00	2.206	15.79	0.00	8.3	91.7	0.0	-1.25	0.67	0.71	—	4.5	0.004	0.71	0.0	0.04	13.56	0.00	2.097	20.12	0.00	9.3	90.7	0.0	-1.08	0.49	0.68	0.74	—	10354	1275	7	0	14	0	0	logfile
✔	7TZ0	26201	2023-04-19	2022-02-15	4.17	3.79	—	4.4	0.003	0.62	0.0	0.04	12.38	0.01	2.265	10.65	0.00	7.9	92.1	0.0	-1.73	0.41	0.61	—	4.0	0.004	0.77	0.0	0.05	12.39	0.00	2.106	22.26	0.35	12.2	87.8	0.0	-2.19	1.41	0.44	0.64	—	2674	347	2	0	0	0	0	logfile
✔	7KPW	22990	2023-04-20	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.9	0.003	0.73	0.0	0.04	5.85	0.00	2.148	2.79	0.00	11.5	87.9	0.6	-0.50	2.04	0.82	0.82	—	4313	865	1	0	0	0	0	logfile
✔	7Z9R	14576	2023-04-28	2022-03-21	4.2	3.82	4.08	4.0	0.008	1.40	15.0	0.10	12.86	0.02	1.182	6.11	1.21	3.3	96.6	0.0	-1.16	0.71	0.73	—	3.8	0.003	0.63	0.0	0.04	12.89	0.00	2.141	7.91	0.03	2.9	97.1	0.0	0.19	0.85	0.76	0.79	—	27078	3349	29	0	66	0	0	logfile
✔	6V05	20969	2023-04-22	2019-11-18	4.1	4.20	—	4.1	0.003	0.66	0.0	0.05	13.87	0.00	2.054	9.26	0.75	3.6	96.3	0.1	-2.86	0.70	0.79	—	4.1	0.003	0.67	0.0	0.04	13.33	0.00	2.158	9.57	0.00	5.1	94.9	0.0	-0.46	1.08	0.70	0.77	—	13705	1884	6	0	0	0	0	logfile

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