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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7PDD | 13334 | 2024-03-10 | 2021-08-05 | 4.2 | 4.47 | — | 4.3 | 0.004 | 0.75 | 0.0 | 0.04 | 14.38 | 0.00 | 2.092 | 20.92 | 0.00 | 7.1 | 92.9 | 0.0 | -4.11 | 0.79 | 0.75 | — | 4.3 | 0.003 | 0.73 | 0.0 | 0.05 | 13.76 | 0.00 | 2.144 | 16.89 | 0.00 | 6.0 | 94.0 | 0.0 | -1.17 | 0.88 | 0.78 | 0.74 | — | 4516 | 577 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6B3o | 7040 | 2024-03-11 | 2017-09-22 | 4.1 | 4.04 | — | 4.1 | 0.024 | 1.82 | 0.0 | 0.11 | 10.99 | 0.01 | 2.285 | 2.28 | 0.34 | 2.1 | 97.6 | 0.3 | 1.14 | 0.69 | 0.76 | — | 4.0 | 0.004 | 0.69 | 0.0 | 0.04 | 13.79 | 0.00 | 2.152 | 9.56 | 0.00 | 4.0 | 95.7 | 0.3 | 1.05 | 1.67 | 0.70 | 0.76 | — | 7980 | 1032 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WTH | 32786 | 2024-03-10 | 2022-02-04 | 4.3 | 3.63 | — | 4.0 | 0.004 | 0.78 | 0.0 | 0.05 | 12.97 | 0.01 | 2.169 | 9.08 | 0.85 | 8.0 | 92.0 | 0.0 | -2.03 | 0.69 | 0.70 | — | 4.0 | 0.003 | 0.69 | 0.0 | 0.05 | 13.50 | 0.00 | 2.162 | 9.39 | 0.00 | 9.9 | 90.1 | 0.0 | -2.15 | 0.53 | 0.69 | 0.71 | — | 3257 | 421 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PVP | 20496 | 2024-03-18 | 2019-07-21 | 4.48 | 4.57 | — | 4.4 | 0.008 | 1.24 | 0.0 | 0.06 | 12.74 | 0.01 | 2.223 | 7.59 | 0.81 | 15.6 | 84.2 | 0.2 | -5.24 | 0.68 | 0.77 | — | 4.4 | 0.003 | 0.82 | 0.0 | 0.04 | 13.59 | 0.00 | 2.067 | 17.42 | 0.00 | 14.7 | 85.2 | 0.2 | -1.88 | 2.09 | 0.68 | 0.80 | — | 21425 | 2644 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 6ZGD | 11202 | 2024-03-15 | 2020-06-18 | 4.1 | 4.30 | 3.99 | 4.2 | 0.006 | 0.62 | 0.0 | 0.05 | 10.93 | 0.01 | 2.137 | 10.94 | 0.61 | 4.6 | 95.4 | 0.0 | -1.11 | 0.74 | 0.82 | — | 4.2 | 0.003 | 0.62 | 0.0 | 0.05 | 12.06 | 0.01 | 2.154 | 9.58 | 0.00 | 2.8 | 97.2 | 0.0 | -0.98 | 0.99 | 0.71 | 0.82 | — | 10175 | 1440 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 5GW4 | 9540 | 2024-03-12 | 2016-09-08 | 4.7 | 4.89 | — | 4.8 | 0.001 | 0.42 | 0.0 | 0.04 | 7.26 | 0.00 | 2.187 | 6.49 | 0.00 | 4.3 | 95.6 | 0.1 | -3.58 | 0.77 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MR1 | 23953 | 2024-03-17 | 2021-05-07 | 4.2 | 4.74 | — | 4.6 | 0.003 | 0.78 | 0.0 | 0.05 | 14.91 | 0.01 | 2.237 | 5.74 | 0.00 | 5.5 | 94.5 | 0.0 | -1.78 | 0.85 | 0.84 | — | 4.6 | 0.003 | 0.60 | 0.0 | 0.04 | 14.83 | 0.00 | 2.185 | 10.10 | 0.00 | 5.6 | 94.3 | 0.0 | -0.25 | 0.34 | 0.85 | 0.83 | — | 18473 | 2316 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JCL | 6526 | 2024-03-19 | 2015-12-21 | 4.0 | 4.03 | — | 4.0 | 0.018 | 1.83 | 9.0 | 0.09 | 9.75 | 0.01 | 2.379 | 2.74 | 0.00 | 5.2 | 94.3 | 0.6 | -0.72 | 0.71 | 0.74 | — | 4.0 | 0.003 | 0.74 | 0.0 | 0.04 | 14.38 | 0.00 | 2.182 | 12.38 | 3.16 | 7.5 | 92.5 | 0.0 | -0.28 | 0.95 | 0.69 | 0.68 | — | 24822 | 3201 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 5KGF | 8246 | 2024-03-16 | 2016-06-13 | 4.54 | 4.64 | — | 4.5 | 0.009 | 1.37 | 2.0 | 0.07 | 27.92 | 0.01 | 1.243 | 27.10 | 0.12 | 6.5 | 93.1 | 0.4 | -4.86 | 0.79 | 0.76 | — | 4.5 | 0.004 | 0.70 | 0.0 | 0.04 | 26.26 | 0.01 | 2.162 | 18.01 | 0.00 | 5.9 | 93.8 | 0.2 | -0.44 | 1.81 | 0.83 | 0.84 | — | 13782 | 986 | 14 | 290 | 0 | 0 | 0 | logfile |
✔ | 8EXQ | 28659 | 2024-03-14 | 2022-10-25 | 4.9 | 5.40 | 5.55 | 6.0 | 0.020 | 1.74 | 0.0 | 0.10 | 10.28 | 0.01 | 2.002 | 1.81 | 0.00 | 2.5 | 97.3 | 0.2 | 0.34 | 0.52 | 0.45 | — | 5.9 | 0.003 | 0.72 | 0.0 | 0.04 | 12.63 | 0.00 | 2.230 | 15.59 | 0.00 | 4.5 | 95.3 | 0.2 | -0.38 | 2.51 | 0.57 | 0.62 | — | 9304 | 1108 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6PWW | 20513 | 2024-03-22 | 2019-07-23 | 4.4 | 5.49 | — | 4.5 | 0.004 | 0.64 | 0.0 | 0.04 | 25.78 | 0.00 | 1.996 | 21.91 | 1.22 | 4.5 | 95.5 | 0.0 | -2.62 | 0.92 | 0.84 | — | 4.5 | 0.006 | 0.70 | 0.0 | 0.04 | 25.35 | 0.00 | 2.055 | 28.04 | 0.00 | 5.8 | 94.2 | 0.0 | -1.03 | 0.64 | 0.92 | 0.85 | — | 18174 | 1550 | 14 | 292 | 1 | 0 | 0 | logfile |
✘ | 3JCU | 6617 | 2024-03-16 | 2016-03-10 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 75994 | 7648 | 76 | 0 | 322 | 0 | 0 | logfile |
✔ | 7JW0 | 22512 | 2024-03-20 | 2020-08-24 | 4.3 | 4.63 | 4.41 | 4.4 | 0.010 | 1.54 | 6.0 | 0.10 | 9.60 | 0.01 | 2.527 | 0.37 | 0.00 | 2.3 | 97.5 | 0.1 | 1.05 | 0.81 | 0.71 | — | 4.4 | 0.003 | 0.68 | 0.0 | 0.05 | 9.55 | 0.00 | 2.160 | 5.46 | 0.00 | 3.3 | 96.7 | 0.0 | 0.04 | 1.29 | 0.85 | 0.79 | — | 26251 | 4314 | 27 | 0 | 69 | 0 | 0 | logfile |
✔ | 7RHZ | 24472 | 2024-03-15 | 2021-07-19 | 4.48 | 7.32 | 5.01 | 7.0 | 0.020 | 1.62 | 32.0 | 0.18 | 21.17 | 0.01 | 2.015 | 9.11 | 0.59 | 3.5 | 96.5 | 0.0 | -1.60 | 0.85 | 0.71 | — | 7.0 | 0.003 | 0.65 | 0.0 | 0.04 | 21.29 | 0.00 | 2.003 | 12.75 | 0.00 | 5.1 | 94.9 | 0.0 | 0.35 | 2.22 | 0.88 | 0.77 | — | 12550 | 615 | 4 | 88 | 0 | 0 | 5875 | logfile |
✔ | 7MJP | 23881 | 2024-03-16 | 2021-04-20 | 4.2 | 4.40 | — | 4.3 | 0.008 | 1.11 | 0.0 | 0.07 | 10.54 | 0.01 | 1.477 | 2.76 | 0.00 | 9.1 | 90.9 | 0.0 | -1.16 | 0.51 | 0.65 | — | 4.4 | 0.002 | 0.62 | 0.0 | 0.05 | 8.27 | 0.00 | 2.278 | 0.82 | 0.00 | 8.1 | 91.9 | 0.0 | -0.47 | 0.45 | 0.56 | 0.70 | — | 14163 | 2818 | 10 | 0 | 8 | 0 | 0 | logfile |
✘ | 7S8B | 24892 | 2024-03-18 | 2021-09-17 | 2.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21124 | 2448 | 8 | 0 | 46 | 0 | 0 | logfile |
✘ | 7EJ1 | 31148 | 2024-03-18 | 2021-04-01 | 3.2 | 3.37 | — | 3.3 | 0.011 | 1.03 | 0.0 | 0.06 | 16.48 | 0.01 | 2.243 | 6.80 | 0.00 | 4.8 | 95.0 | 0.1 | -5.79 | 0.83 | 0.86 | 3.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21236 | 2740 | 12 | 0 | 4 | 0 | 0 | logfile |
✔ | 8EXP | 28658 | 2024-03-14 | 2022-10-25 | 4.2 | 4.47 | 4.29 | 4.6 | 0.019 | 1.74 | 0.0 | 0.10 | 10.69 | 0.01 | 2.031 | 5.52 | 0.60 | 3.4 | 96.4 | 0.2 | -0.04 | 0.53 | 0.43 | — | 4.5 | 0.003 | 0.69 | 0.0 | 0.04 | 13.16 | 0.00 | 2.069 | 15.10 | 0.00 | 5.0 | 95.0 | 0.0 | 0.50 | 1.11 | 0.64 | 0.70 | — | 9024 | 1078 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 8SAX | 40283 | 2024-03-18 | 2023-04-02 | 4.0 | 4.49 | 4.01 | 4.3 | 0.004 | 0.65 | 0.0 | 0.06 | 13.45 | 0.00 | 2.035 | 2.64 | 2.12 | 2.7 | 97.0 | 0.4 | -0.49 | 0.77 | 0.75 | — | 4.3 | 0.003 | 0.72 | 0.0 | 0.05 | 13.86 | 0.00 | 2.124 | 8.81 | 3.12 | 4.9 | 94.7 | 0.4 | -1.10 | 3.24 | 0.80 | 0.82 | — | 19860 | 2496 | 24 | 0 | 51 | 0 | 0 | logfile |
✘ | 8E9B | 27962 | 2024-03-24 | 2022-08-26 | 3.5 | 3.16 | 3.52 | 3.4 | 0.004 | 0.71 | 1.0 | 0.05 | 15.39 | 0.01 | 2.023 | 10.91 | 0.24 | 5.2 | 94.7 | 0.1 | 0.07 | 0.74 | 0.77 | 1.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39160 | 4933 | 25 | 0 | 20 | 0 | 0 | logfile |