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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6UTF | 20877 | 2022-12-21 | 2019-10-29 | 3.4 | 4.04 | 3.76 | 4.0 | 0.009 | 1.28 | 0.0 | 0.07 | 10.41 | 0.01 | 2.036 | 7.47 | 0.70 | 5.7 | 93.9 | 0.5 | -3.27 | 0.75 | 0.77 | 1.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 46494 | 6013 | 28 | 0 | 0 | 0 | 0 | logfile |
✘ | 7C2K | 30275 | 2022-12-18 | 2020-05-07 | 2.93 | 3.24 | 3.00 | 3.1 | 0.007 | 0.67 | 0.0 | 0.04 | 13.79 | 0.00 | 2.256 | 7.24 | 0.00 | 4.5 | 95.5 | 0.0 | -2.91 | 0.78 | 0.89 | 4.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10692 | 1256 | 7 | 31 | 3 | 0 | 0 | logfile |
✔ | 6W20 | 21520 | 2022-12-22 | 2020-03-04 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 48206 | 6110 | 27 | 0 | 35 | 0 | 0 | logfile |
✘ | 6YMY | 10848 | 2022-12-18 | 2020-04-10 | 3.41 | 3.81 | 3.50 | 3.7 | 0.008 | 1.25 | 0.0 | 0.06 | 16.55 | 0.01 | 0.424 | 7.47 | 0.27 | 8.9 | 91.0 | 0.1 | -6.00 | 0.68 | 0.82 | 2.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14612 | 1766 | 19 | 0 | 16 | 0 | 0 | logfile |
✘ | 6YXR | 10995 | 2022-12-19 | 2020-05-03 | 3.4 | 3.53 | 3.43 | 3.5 | 0.019 | 2.32 | 2.0 | 0.14 | 19.66 | 0.02 | 1.197 | 27.04 | 0.44 | 4.1 | 95.7 | 0.3 | -3.53 | 0.67 | 0.76 | 2.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31910 | 2783 | 20 | 0 | 194 | 0 | 0 | logfile |
✘ | 7ABF | 11694 | 2022-12-18 | 2020-09-07 | 3.9 | 4.03 | — | 3.9 | 0.004 | 0.69 | 0.0 | 0.13 | 11.14 | 0.00 | 1.747 | 4.07 | 0.19 | 11.8 | 88.1 | 0.1 | -3.73 | 0.73 | 0.72 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25904 | 3732 | 17 | 152 | 3 | 0 | 0 | logfile |
✔ | 7oJ8 | 12939 | 2022-12-18 | 2021-05-14 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9148 | 1150 | 4 | 0 | 7 | 0 | 0 | logfile |
✘ | 6YBQ | 10771 | 2022-12-18 | 2020-03-17 | 1.96 | 2.06 | — | 2.0 | 0.005 | 0.73 | 0.0 | 0.05 | 13.34 | 0.01 | 1.192 | 2.27 | 0.00 | 2.7 | 97.3 | 0.0 | -1.94 | 0.82 | 0.87 | 6.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34092 | 4289 | 36 | 0 | 12 | 871 | 0 | logfile |
✘ | 6VY2 | 21456 | 2022-12-18 | 2020-02-25 | 4.86 | 6.05 | — | 5.2 | 0.006 | 0.91 | 0.0 | 0.07 | 14.28 | 0.00 | 2.056 | 18.44 | 4.96 | 5.7 | 93.8 | 0.5 | -2.41 | 0.82 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21426 | 2442 | 66 | 0 | 180 | 0 | 0 | logfile |
✘ | 6XKT | 22224 | 2022-12-18 | 2020-06-27 | 3.75 | 3.88 | — | 3.8 | 0.009 | 0.99 | 1.0 | 0.07 | 13.78 | 0.01 | 1.732 | 26.25 | 0.08 | 16.5 | 83.1 | 0.4 | -4.20 | 0.75 | 0.79 | 2.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13079 | 1678 | 12 | 0 | 8 | 0 | 0 | logfile |
✔ | 6UQE | 20845 | 2022-12-22 | 2019-10-18 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 48402 | 6140 | 28 | 0 | 33 | 0 | 0 | logfile |
✘ | 6ZHD | 11218 | 2022-12-18 | 2020-06-22 | 3.7 | 4.31 | — | 3.8 | 0.008 | 1.45 | 10.0 | 0.10 | 12.70 | 0.01 | 1.973 | 5.32 | 0.74 | 3.6 | 96.3 | 0.0 | -0.92 | 0.89 | 0.88 | 2.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26927 | 3353 | 29 | 0 | 66 | 0 | 0 | logfile |
✘ | 6V4D | 21040 | 2022-12-18 | 2019-11-27 | 3.8 | 4.13 | — | 4.1 | 0.007 | 0.90 | 0.0 | 0.06 | 13.63 | 0.01 | 1.752 | 21.75 | 1.35 | 7.0 | 93.0 | 0.0 | -3.84 | 0.49 | 0.80 | 2.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3095 | 422 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7AQC | 11862 | 2022-12-19 | 2020-10-21 | 2.99 | 2.20 | — | 2.5 | 0.004 | 0.83 | 0.0 | 0.05 | 16.62 | 0.01 | 1.862 | 5.15 | 0.13 | 5.4 | 94.6 | 0.0 | -1.91 | 0.83 | 0.80 | 2.39 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 95378 | 3752 | 34 | 3077 | 0 | 0 | 0 | logfile |
✘ | 6PW6 | 20500 | 2022-12-18 | 2019-07-22 | 4.5 | 4.56 | 4.36 | 4.5 | 0.021 | 1.78 | 0.0 | 0.11 | 10.80 | 0.01 | 2.200 | 1.86 | 0.56 | 2.7 | 97.2 | 0.2 | 0.50 | 0.74 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15942 | 1842 | 45 | 0 | 108 | 0 | 0 | logfile |
✘ | 7JL2 | 22370 | 2022-12-20 | 2020-07-29 | 4.3 | 4.04 | — | 3.6 | 0.006 | 1.35 | 3.0 | 0.05 | 14.41 | 0.00 | 1.889 | 19.18 | 0.55 | 5.3 | 94.7 | 0.0 | -0.56 | 0.85 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22128 | 2526 | 11 | 88 | 12 | 0 | 0 | logfile |
✘ | 6XZC | 10658 | 2022-12-18 | 2020-02-03 | 3.37 | 3.56 | 3.37 | 3.6 | 0.004 | 0.63 | 0.0 | 0.04 | 12.50 | 0.01 | 2.323 | 2.37 | 3.06 | 1.7 | 98.3 | 0.0 | -1.92 | 0.66 | 0.74 | 0.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13279 | 1694 | 7 | 0 | 0 | 0 | 0 | logfile |
✘ | 6WTi | 21897 | 2022-12-18 | 2020-05-02 | 2.38 | 2.42 | — | 2.5 | 0.010 | 1.20 | 5.0 | 0.07 | 19.47 | 0.01 | 1.179 | 9.26 | 11.79 | 4.6 | 95.3 | 0.1 | -3.48 | 0.60 | 0.74 | 1.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9980 | 1207 | 8 | 0 | 14 | 0 | 0 | logfile |
✘ | 6TRC | 10558 | 2022-12-19 | 2019-12-18 | 2.98 | 3.06 | — | 3.1 | 0.010 | 1.16 | 0.0 | 0.07 | 19.32 | 0.02 | 1.220 | 9.53 | 1.42 | 7.9 | 92.1 | 0.0 | -3.92 | 0.71 | 0.79 | 3.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 75591 | 6849 | 99 | 0 | 402 | 651 | 0 | logfile |
✘ | 7JPW | 22425 | 2022-12-18 | 2020-08-10 | 3.2 | 3.29 | — | 3.2 | 0.015 | 1.06 | 0.0 | 0.06 | 18.76 | 0.01 | 2.068 | 16.08 | 11.04 | 9.6 | 90.3 | 0.1 | -4.54 | 0.69 | 0.85 | 2.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18583 | 2257 | 4 | 0 | 12 | 0 | 0 | logfile |