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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 3J5Q | 5776 | 2022-12-18 | 2013-10-28 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18556 | 2448 | 8 | 0 | 44 | 0 | 292 | logfile |
✔ | 3J7H | 5995 | 2022-12-18 | 2014-06-30 | 3.2 | 2.58 | 3.45 | 3.4 | 0.005 | 1.17 | 0.0 | 0.06 | 17.98 | 0.01 | 1.085 | 133.11 | 12.24 | 2.5 | 97.4 | 0.2 | 2.39 | 0.77 | 0.79 | 2.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32828 | 4088 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 6PP7 | 20421 | 2022-12-18 | 2019-07-05 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32499 | 2081 | 13 | 0 | 25 | 0 | 16296 | logfile |
✘ | 6BAJ | 7074 | 2022-12-18 | 2017-10-13 | 3.2 | 3.67 | — | 3.6 | 0.008 | 1.40 | 0.0 | 0.06 | 15.64 | 0.01 | 2.131 | 6.76 | 1.74 | 6.6 | 93.0 | 0.4 | -4.66 | 0.60 | 0.79 | 3.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24318 | 3042 | 7 | 0 | 42 | 1 | 0 | logfile |
✘ | 5TV4 | 8469 | 2022-12-18 | 2016-11-08 | 4.2 | 4.13 | — | 4.0 | 0.008 | 1.22 | 0.0 | 0.06 | 12.84 | 0.01 | 1.248 | 46.46 | 0.48 | 13.1 | 86.2 | 0.7 | -5.82 | 0.48 | 0.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6548 | 1140 | 5 | 0 | 17 | 0 | 0 | logfile |
✘ | 5ZJi | 6932 | 2022-12-21 | 2018-03-20 | 3.3 | 3.39 | — | 3.4 | 0.012 | 1.48 | 0.0 | 0.11 | 16.64 | 0.01 | 1.204 | 8.01 | 0.45 | 6.4 | 93.6 | 0.0 | -3.56 | 0.68 | 0.84 | 3.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 44708 | 4087 | 40 | 0 | 271 | 0 | 0 | logfile |
✔ | 6E8G | 9005 | 2022-12-19 | 2018-07-29 | 2.9 | 3.09 | 2.96 | 3.0 | 0.006 | 0.89 | 0.0 | 0.05 | 10.62 | 0.01 | 2.201 | 2.53 | 0.34 | 0.9 | 99.1 | 0.0 | -1.52 | 0.59 | 0.84 | 2.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 97272 | 12276 | 72 | 0 | 0 | 0 | 0 | logfile |
✘ | 6NT4 | 0501 | 2022-12-18 | 2019-01-28 | 3.5 | 4.11 | 3.77 | 4.0 | 0.008 | 1.07 | 1.0 | 0.53 | 14.99 | 0.00 | 1.184 | 12.03 | 0.64 | 12.9 | 86.7 | 0.4 | -4.72 | 0.51 | 0.76 | 1.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11924 | 1406 | 5 | 0 | 20 | 0 | 0 | logfile |
✘ | 6CNA | 7529 | 2022-12-18 | 2018-03-07 | 4.6 | 5.89 | — | 5.8 | 0.006 | 0.91 | 0.0 | 0.05 | 10.19 | 0.01 | 2.021 | 26.65 | 0.00 | 9.7 | 90.1 | 0.3 | -4.80 | 0.57 | 0.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21426 | 3160 | 14 | 0 | 22 | 0 | 0 | logfile |
✘ | 6MCC | 9067 | 2022-12-18 | 2018-08-31 | 3.9 | 4.31 | — | 4.2 | 0.006 | 1.04 | 0.0 | 0.15 | 14.86 | 0.01 | 2.290 | 6.05 | 1.08 | 8.5 | 91.5 | 0.0 | -4.52 | 0.79 | 0.81 | 1.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14175 | 1494 | 3 | 115 | 1 | 0 | 0 | logfile |
✘ | 3JC7 | 6536 | 2022-12-20 | 2015-11-24 | 4.8 | 5.23 | — | 4.8 | 0.009 | 1.57 | 7.0 | 0.07 | 12.16 | 0.01 | 0.163 | 42.96 | 0.45 | 8.5 | 90.1 | 1.3 | -4.10 | 0.75 | 0.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40298 | 5075 | 12 | 0 | 1 | 0 | 0 | logfile |
✔ | 3JBX | 6487 | 2022-12-18 | 2015-10-22 | 3.4 | 3.51 | — | 3.6 | 0.006 | 1.24 | 1.0 | 0.05 | 21.13 | 0.01 | 1.816 | 16.87 | 11.74 | 6.1 | 93.8 | 0.1 | -3.11 | 0.75 | 0.80 | 2.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16670 | 1802 | 14 | 116 | 6 | 0 | 0 | logfile |
✘ | 6oRQ | 20178 | 2022-12-18 | 2019-04-30 | 4.4 | 4.71 | 4.38 | 4.5 | 0.007 | 1.26 | 0.0 | 0.07 | 12.59 | 0.01 | 2.039 | 6.79 | 1.04 | 16.3 | 83.4 | 0.3 | -4.97 | 0.65 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20176 | 2430 | 40 | 0 | 83 | 0 | 0 | logfile |
✘ | 5WPV | 8883 | 2022-12-18 | 2017-08-07 | 3.59 | 3.68 | — | 3.7 | 0.006 | 0.90 | 0.0 | 0.05 | 10.97 | 0.01 | 2.329 | 2.80 | 0.18 | 3.7 | 96.3 | 0.0 | -4.61 | 0.62 | 0.81 | 2.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14889 | 1816 | 9 | 0 | 9 | 0 | 0 | logfile |
✘ | 6FBS | 4225 | 2022-12-18 | 2017-12-19 | 3.07 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13421 | 1665 | 5 | 8 | 3 | 0 | 0 | logfile |
✘ | 6PR5 | 20457 | 2022-12-18 | 2019-07-10 | 3.3 | 3.71 | — | 3.6 | 0.008 | 0.78 | 0.0 | 0.05 | 22.82 | 0.00 | 1.963 | 13.80 | 0.71 | 1.4 | 98.3 | 0.3 | -3.27 | 0.76 | 0.82 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10194 | 960 | 10 | 124 | 6 | 0 | 0 | logfile |
✘ | 6JEo | 9807 | 2022-12-19 | 2019-02-06 | 3.3 | 3.44 | — | 3.4 | 0.009 | 1.14 | 0.0 | 0.06 | 18.11 | 0.02 | 1.212 | 7.53 | 0.24 | 4.8 | 95.2 | 0.0 | -5.26 | 0.73 | 0.81 | 4.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 94576 | 8774 | 88 | 0 | 504 | 0 | 0 | logfile |
✘ | 5GJW | 9515 | 2022-12-18 | 2016-07-02 | 3.9 | 4.02 | — | 4.0 | 0.011 | 1.50 | 20.0 | 0.08 | 11.50 | 0.01 | 1.844 | 12.84 | 1.50 | 12.8 | 85.5 | 1.7 | -5.28 | 0.55 | 0.80 | 1.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21561 | 2676 | 14 | 0 | 29 | 0 | 0 | logfile |
✘ | 5A7U | 3079 | 2022-12-18 | 2015-07-10 | 4.8 | 3.82 | — | 4.6 | 0.020 | 3.41 | 3.0 | 0.25 | 21.78 | 0.08 | 2.651 | 30.77 | 25.00 | 24.0 | 72.0 | 4.0 | -6.05 | -0.01 | 0.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 455 | 27 | 1 | 0 | 1 | 0 | 231 | logfile |
✘ | 6N7R | 0361 | 2022-12-19 | 2018-11-28 | 3.2 | 3.34 | — | 3.3 | 0.017 | 1.37 | 6.0 | 0.08 | 15.58 | 0.01 | 1.205 | 6.64 | 4.50 | 4.8 | 94.8 | 0.4 | -2.74 | 0.75 | 0.84 | 3.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35750 | 2908 | 19 | 568 | 91 | 0 | 0 | logfile |