Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6N7R	0361	2022-12-19	2018-11-28	3.2	3.34	—	3.3	0.017	1.37	6.0	0.08	15.58	0.01	1.205	6.64	4.50	4.8	94.8	0.4	-2.74	0.75	0.84	3.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35750	2908	19	568	91	0	0	logfile
✘	6oRQ	20178	2022-12-18	2019-04-30	4.4	4.71	4.38	4.5	0.007	1.26	0.0	0.07	12.59	0.01	2.039	6.79	1.04	16.3	83.4	0.3	-4.97	0.65	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20176	2430	40	0	83	0	0	logfile
✘	6ADQ	9610	2022-12-22	2018-08-01	3.5	3.66	3.51	3.6	0.018	1.74	0.0	0.07	16.83	0.03	1.170	9.77	0.51	9.8	90.1	0.1	-4.62	0.67	0.81	2.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	48946	6026	44	0	74	0	0	logfile
✘	6SW9	10320	2022-12-19	2019-09-20	4.2	5.88	4.46	3.0	0.014	1.26	0.0	0.06	17.96	0.02	1.769	31.85	0.80	19.0	80.8	0.2	-5.60	0.85	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	70661	4508	47	1593	41	42	0	logfile
✘	3JC5	6535	2022-12-20	2015-11-24	4.7	5.02	—	4.8	0.009	1.54	5.0	0.06	12.17	0.01	0.300	46.35	0.63	9.4	88.9	1.7	-4.21	0.76	0.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	40041	5039	11	0	0	0	0	logfile
✘	6oMM	20126	2022-12-18	2019-04-19	3.17	3.31	—	3.3	0.005	0.93	1.0	0.06	9.85	0.01	2.222	5.12	0.00	3.1	96.9	0.0	-2.94	0.67	0.83	3.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9134	1142	7	0	8	0	0	logfile
✘	6Q2R	20578	2022-12-18	2019-08-08	4.3	4.92	—	4.6	0.004	0.81	0.0	0.05	8.41	0.01	1.384	4.93	0.00	5.4	94.6	0.0	-3.85	0.68	0.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30392	3800	16	0	40	0	0	logfile
✔	4UQ8	2676	2022-12-16	2014-06-21	4.95	5.05	4.64	4.9	0.012	2.07	23.0	1.38	6.71	0.01	1.032	67.37	25.00	0.0	0.0	0.0	—	0.57	0.75	—	4.9	0.013	2.54	0.0	0.41	5.50	0.00	2.103	29.65	0.00	0.0	0.0	0.0	—	2.11	0.61	0.83	—	28647	33	54	0	5686	0	0	logfile
✘	5ZGB	6929	2022-12-19	2018-03-08	3.63	3.79	—	3.7	0.012	1.47	0.0	0.07	18.52	0.02	1.175	15.16	0.43	12.9	86.8	0.3	-5.22	0.73	0.74	2.88	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35011	3102	31	0	215	0	0	logfile
✘	6oo3	20143	2022-12-18	2019-04-22	2.9	3.02	2.79	3.0	0.014	1.22	0.0	0.06	9.99	0.01	2.495	2.38	0.00	3.1	96.9	0.0	-2.84	0.68	0.85	4.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18236	2404	8	0	4	0	0	logfile
✘	6P7N	20267	2022-12-20	2019-06-06	4.9	9.02	6.14	4.9	0.002	0.53	0.0	0.04	14.46	0.00	2.152	6.68	1.33	5.6	94.4	0.0	-3.30	0.81	0.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20356	2352	10	52	4	0	0	logfile
✘	6oo5	20146	2022-12-18	2019-04-22	4.2	4.30	4.10	4.2	0.012	1.05	0.0	0.06	9.23	0.01	2.246	3.36	0.00	4.5	95.5	0.0	-2.74	0.65	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17548	2440	8	0	4	0	0	logfile
✘	6KAF	9957	2022-12-19	2019-06-22	3.73	3.95	—	3.7	0.014	1.69	0.0	0.10	16.92	0.01	1.212	7.91	0.62	10.0	90.0	0.1	-3.68	0.78	0.73	2.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	104363	9607	104	0	552	0	0	logfile
✔	6DRK	8901	2022-12-18	2018-06-12	3.8	4.29	—	4.2	0.010	1.18	4.0	0.07	9.74	0.01	2.150	5.96	0.36	5.9	94.1	0.0	-3.07	0.64	0.74	1.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	33120	5060	4	0	0	0	0	logfile
✘	5ooC	3836	2022-12-18	2017-08-07	3.6	3.68	3.40	3.7	0.015	1.58	0.0	0.07	12.47	0.02	1.147	9.54	0.00	4.4	92.9	2.7	-1.43	0.66	0.83	2.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14885	1855	10	0	15	0	0	logfile
✘	6PR5	20457	2022-12-18	2019-07-10	3.3	3.71	—	3.6	0.008	0.78	0.0	0.05	22.82	0.00	1.963	13.80	0.71	1.4	98.3	0.3	-3.27	0.76	0.82	2.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10194	960	10	124	6	0	0	logfile
✘	6MZJ	9303	2022-12-18	2018-11-05	4.8	5.06	—	4.4	0.014	1.50	0.0	0.08	8.01	0.00	2.352	1.32	2.65	3.2	96.6	0.1	-0.18	0.70	0.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12653	2088	52	0	149	0	0	logfile
✘	6oo7	20148	2022-12-18	2019-04-22	3.8	4.25	3.77	4.0	0.013	1.08	0.0	0.06	9.52	0.01	2.273	4.49	0.00	3.5	96.5	0.0	-1.41	0.75	0.78	2.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16860	2394	8	0	4	0	0	logfile
✘	6iCZ	9645	2022-12-19	2018-09-07	3.0	3.12	—	3.1	0.015	1.44	14.0	0.10	13.30	0.01	1.549	8.40	1.39	5.8	93.4	0.8	-2.81	0.53	0.64	3.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	97900	14175	58	418	19	0	0	logfile
✘	6VRL	21370	2022-12-18	2020-02-07	3.8	3.98	4.22	3.9	0.002	0.55	0.0	0.04	14.02	0.00	2.159	10.65	0.00	4.9	95.1	0.0	-3.12	0.49	0.69	1.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6141	764	4	0	4	0	0	logfile

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