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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6N7R | 0361 | 2022-12-19 | 2018-11-28 | 3.2 | 3.34 | — | 3.3 | 0.017 | 1.37 | 6.0 | 0.08 | 15.58 | 0.01 | 1.205 | 6.64 | 4.50 | 4.8 | 94.8 | 0.4 | -2.74 | 0.75 | 0.84 | 3.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35750 | 2908 | 19 | 568 | 91 | 0 | 0 | logfile |
✘ | 6oRQ | 20178 | 2022-12-18 | 2019-04-30 | 4.4 | 4.71 | 4.38 | 4.5 | 0.007 | 1.26 | 0.0 | 0.07 | 12.59 | 0.01 | 2.039 | 6.79 | 1.04 | 16.3 | 83.4 | 0.3 | -4.97 | 0.65 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20176 | 2430 | 40 | 0 | 83 | 0 | 0 | logfile |
✘ | 6ADQ | 9610 | 2022-12-22 | 2018-08-01 | 3.5 | 3.66 | 3.51 | 3.6 | 0.018 | 1.74 | 0.0 | 0.07 | 16.83 | 0.03 | 1.170 | 9.77 | 0.51 | 9.8 | 90.1 | 0.1 | -4.62 | 0.67 | 0.81 | 2.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 48946 | 6026 | 44 | 0 | 74 | 0 | 0 | logfile |
✘ | 6SW9 | 10320 | 2022-12-19 | 2019-09-20 | 4.2 | 5.88 | 4.46 | 3.0 | 0.014 | 1.26 | 0.0 | 0.06 | 17.96 | 0.02 | 1.769 | 31.85 | 0.80 | 19.0 | 80.8 | 0.2 | -5.60 | 0.85 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 70661 | 4508 | 47 | 1593 | 41 | 42 | 0 | logfile |
✘ | 3JC5 | 6535 | 2022-12-20 | 2015-11-24 | 4.7 | 5.02 | — | 4.8 | 0.009 | 1.54 | 5.0 | 0.06 | 12.17 | 0.01 | 0.300 | 46.35 | 0.63 | 9.4 | 88.9 | 1.7 | -4.21 | 0.76 | 0.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40041 | 5039 | 11 | 0 | 0 | 0 | 0 | logfile |
✘ | 6oMM | 20126 | 2022-12-18 | 2019-04-19 | 3.17 | 3.31 | — | 3.3 | 0.005 | 0.93 | 1.0 | 0.06 | 9.85 | 0.01 | 2.222 | 5.12 | 0.00 | 3.1 | 96.9 | 0.0 | -2.94 | 0.67 | 0.83 | 3.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9134 | 1142 | 7 | 0 | 8 | 0 | 0 | logfile |
✘ | 6Q2R | 20578 | 2022-12-18 | 2019-08-08 | 4.3 | 4.92 | — | 4.6 | 0.004 | 0.81 | 0.0 | 0.05 | 8.41 | 0.01 | 1.384 | 4.93 | 0.00 | 5.4 | 94.6 | 0.0 | -3.85 | 0.68 | 0.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30392 | 3800 | 16 | 0 | 40 | 0 | 0 | logfile |
✔ | 4UQ8 | 2676 | 2022-12-16 | 2014-06-21 | 4.95 | 5.05 | 4.64 | 4.9 | 0.012 | 2.07 | 23.0 | 1.38 | 6.71 | 0.01 | 1.032 | 67.37 | 25.00 | 0.0 | 0.0 | 0.0 | — | 0.57 | 0.75 | — | 4.9 | 0.013 | 2.54 | 0.0 | 0.41 | 5.50 | 0.00 | 2.103 | 29.65 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.11 | 0.61 | 0.83 | — | 28647 | 33 | 54 | 0 | 5686 | 0 | 0 | logfile |
✘ | 5ZGB | 6929 | 2022-12-19 | 2018-03-08 | 3.63 | 3.79 | — | 3.7 | 0.012 | 1.47 | 0.0 | 0.07 | 18.52 | 0.02 | 1.175 | 15.16 | 0.43 | 12.9 | 86.8 | 0.3 | -5.22 | 0.73 | 0.74 | 2.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35011 | 3102 | 31 | 0 | 215 | 0 | 0 | logfile |
✘ | 6oo3 | 20143 | 2022-12-18 | 2019-04-22 | 2.9 | 3.02 | 2.79 | 3.0 | 0.014 | 1.22 | 0.0 | 0.06 | 9.99 | 0.01 | 2.495 | 2.38 | 0.00 | 3.1 | 96.9 | 0.0 | -2.84 | 0.68 | 0.85 | 4.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18236 | 2404 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 6P7N | 20267 | 2022-12-20 | 2019-06-06 | 4.9 | 9.02 | 6.14 | 4.9 | 0.002 | 0.53 | 0.0 | 0.04 | 14.46 | 0.00 | 2.152 | 6.68 | 1.33 | 5.6 | 94.4 | 0.0 | -3.30 | 0.81 | 0.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20356 | 2352 | 10 | 52 | 4 | 0 | 0 | logfile |
✘ | 6oo5 | 20146 | 2022-12-18 | 2019-04-22 | 4.2 | 4.30 | 4.10 | 4.2 | 0.012 | 1.05 | 0.0 | 0.06 | 9.23 | 0.01 | 2.246 | 3.36 | 0.00 | 4.5 | 95.5 | 0.0 | -2.74 | 0.65 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17548 | 2440 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 6KAF | 9957 | 2022-12-19 | 2019-06-22 | 3.73 | 3.95 | — | 3.7 | 0.014 | 1.69 | 0.0 | 0.10 | 16.92 | 0.01 | 1.212 | 7.91 | 0.62 | 10.0 | 90.0 | 0.1 | -3.68 | 0.78 | 0.73 | 2.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 104363 | 9607 | 104 | 0 | 552 | 0 | 0 | logfile |
✔ | 6DRK | 8901 | 2022-12-18 | 2018-06-12 | 3.8 | 4.29 | — | 4.2 | 0.010 | 1.18 | 4.0 | 0.07 | 9.74 | 0.01 | 2.150 | 5.96 | 0.36 | 5.9 | 94.1 | 0.0 | -3.07 | 0.64 | 0.74 | 1.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33120 | 5060 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 5ooC | 3836 | 2022-12-18 | 2017-08-07 | 3.6 | 3.68 | 3.40 | 3.7 | 0.015 | 1.58 | 0.0 | 0.07 | 12.47 | 0.02 | 1.147 | 9.54 | 0.00 | 4.4 | 92.9 | 2.7 | -1.43 | 0.66 | 0.83 | 2.39 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14885 | 1855 | 10 | 0 | 15 | 0 | 0 | logfile |
✘ | 6PR5 | 20457 | 2022-12-18 | 2019-07-10 | 3.3 | 3.71 | — | 3.6 | 0.008 | 0.78 | 0.0 | 0.05 | 22.82 | 0.00 | 1.963 | 13.80 | 0.71 | 1.4 | 98.3 | 0.3 | -3.27 | 0.76 | 0.82 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10194 | 960 | 10 | 124 | 6 | 0 | 0 | logfile |
✘ | 6MZJ | 9303 | 2022-12-18 | 2018-11-05 | 4.8 | 5.06 | — | 4.4 | 0.014 | 1.50 | 0.0 | 0.08 | 8.01 | 0.00 | 2.352 | 1.32 | 2.65 | 3.2 | 96.6 | 0.1 | -0.18 | 0.70 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12653 | 2088 | 52 | 0 | 149 | 0 | 0 | logfile |
✘ | 6oo7 | 20148 | 2022-12-18 | 2019-04-22 | 3.8 | 4.25 | 3.77 | 4.0 | 0.013 | 1.08 | 0.0 | 0.06 | 9.52 | 0.01 | 2.273 | 4.49 | 0.00 | 3.5 | 96.5 | 0.0 | -1.41 | 0.75 | 0.78 | 2.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16860 | 2394 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 6iCZ | 9645 | 2022-12-19 | 2018-09-07 | 3.0 | 3.12 | — | 3.1 | 0.015 | 1.44 | 14.0 | 0.10 | 13.30 | 0.01 | 1.549 | 8.40 | 1.39 | 5.8 | 93.4 | 0.8 | -2.81 | 0.53 | 0.64 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 97900 | 14175 | 58 | 418 | 19 | 0 | 0 | logfile |
✘ | 6VRL | 21370 | 2022-12-18 | 2020-02-07 | 3.8 | 3.98 | 4.22 | 3.9 | 0.002 | 0.55 | 0.0 | 0.04 | 14.02 | 0.00 | 2.159 | 10.65 | 0.00 | 4.9 | 95.1 | 0.0 | -3.12 | 0.49 | 0.69 | 1.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6141 | 764 | 4 | 0 | 4 | 0 | 0 | logfile |