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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6ZDG | 11173 | 2023-04-28 | 2020-06-14 | 4.7 | 4.97 | — | 4.8 | 0.004 | 0.50 | 0.0 | 0.04 | 8.99 | 0.00 | 1.891 | 7.24 | 2.41 | 3.9 | 96.1 | 0.0 | 0.05 | 0.71 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28548 | 1884 | 12 | 0 | 3 | 0 | 13995 | logfile |
✘ | 6XPD | 22285 | 2023-04-20 | 2020-07-08 | 3.8 | 3.62 | — | 3.7 | 0.007 | 0.77 | 0.0 | 0.04 | 14.37 | 0.00 | 1.461 | 13.89 | 0.20 | 9.4 | 90.6 | 0.0 | -3.83 | 0.60 | 0.85 | 1.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4622 | 606 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 6W1J | 21511 | 2023-04-24 | 2020-03-04 | 2.92 | 3.34 | 2.83 | 3.2 | 0.010 | 1.17 | 0.0 | 0.10 | 10.28 | 0.01 | 2.337 | 2.46 | 0.82 | 5.6 | 94.4 | 0.0 | -5.20 | 0.76 | 0.88 | 4.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16861 | 1965 | 25 | 0 | 41 | 0 | 0 | logfile |
✘ | 7ND4 | 12275 | 2023-04-29 | 2021-01-30 | 3.6 | 3.31 | — | 3.2 | 0.004 | 0.62 | 3.0 | 0.05 | 11.02 | 0.00 | 2.233 | 3.79 | 0.28 | 4.1 | 95.6 | 0.2 | -0.12 | 0.74 | 0.79 | 2.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29848 | 3729 | 30 | 0 | 71 | 0 | 0 | logfile |
✘ | 6R94 | 4768 | 2023-04-26 | 2019-04-02 | 3.5 | 2.44 | — | 3.6 | 0.012 | 1.01 | 1.0 | 0.07 | 26.38 | 0.01 | 2.114 | 1.78 | 0.00 | 3.0 | 96.6 | 0.4 | 0.29 | 0.74 | 0.70 | 2.23 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22367 | 803 | 10 | 290 | 0 | 0 | 9995 | logfile |
✘ | 7QDS | 13925 | 2023-04-23 | 2021-11-30 | 3.8 | 3.53 | 3.57 | 3.7 | 0.005 | 0.86 | 1.0 | 0.05 | 14.59 | 0.01 | 2.067 | 14.28 | 0.00 | 5.7 | 94.3 | 0.0 | -0.33 | 0.80 | 0.82 | 1.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13798 | 1771 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7RGM | 24452 | 2023-04-21 | 2021-07-15 | 2.8 | 2.86 | — | 2.9 | 0.014 | 1.70 | 0.0 | 0.08 | 15.75 | 0.01 | 2.328 | 1.94 | 3.63 | 5.2 | 94.6 | 0.3 | -1.77 | 0.62 | 0.86 | 3.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 59928 | 3872 | 16 | 0 | 32 | 0 | 29736 | logfile |
✘ | 8EFB | 28077 | 2023-04-21 | 2022-09-08 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8947 | 1136 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 7BSP | 30163 | 2023-04-22 | 2020-03-31 | 4.0 | 4.12 | — | 4.0 | 0.005 | 0.66 | 0.0 | 0.04 | 13.90 | 0.01 | 1.928 | 53.93 | 0.00 | 14.6 | 85.4 | 0.0 | -7.27 | 0.68 | 0.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11010 | 1352 | 5 | 0 | 5 | 0 | 0 | logfile |
✘ | 7SA3 | 24943 | 2023-04-23 | 2021-09-22 | 2.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15960 | 1644 | 19 | 0 | 79 | 230 | 0 | logfile |
✘ | 6JSi | 9882 | 2023-04-22 | 2019-04-08 | 4.7 | 4.70 | — | 4.6 | 0.007 | 1.48 | 0.0 | 0.06 | 15.33 | 0.01 | 2.231 | 10.68 | 2.42 | 23.2 | 72.3 | 4.5 | -6.05 | 0.64 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62820 | 5844 | 9 | 0 | 4044 | 0 | 0 | logfile |
✘ | 6M32 | 30069 | 2023-04-26 | 2020-03-02 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23566 | 2523 | 13 | 0 | 67 | 0 | 0 | logfile |
✘ | 7ATE | 11921 | 2023-04-21 | 2020-10-30 | 2.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9056 | 1098 | 10 | 0 | 9 | 145 | 0 | logfile |
✘ | 5XNo | 6744 | 2023-04-21 | 2017-05-23 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10020 | 854 | 8 | 0 | 72 | 0 | 0 | logfile |
✘ | 6X68 | 22073 | 2023-04-21 | 2020-05-27 | 3.66 | 3.88 | — | 3.8 | 0.012 | 1.74 | 10.0 | 0.09 | 20.68 | 0.01 | 1.652 | 4.17 | 0.57 | 2.5 | 97.2 | 0.3 | -0.38 | 0.72 | 0.77 | 1.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10246 | 956 | 7 | 124 | 8 | 0 | 0 | logfile |
✘ | 7o85 | 12761 | 2023-04-28 | 2021-04-14 | 3.3 | 3.50 | — | 3.5 | 0.002 | 0.48 | 0.0 | 0.04 | 13.51 | 0.00 | 1.470 | 7.44 | 0.00 | 3.3 | 96.7 | 0.0 | -0.25 | 0.71 | 0.75 | 2.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28525 | 3843 | 28 | 0 | 14 | 0 | 0 | logfile |
✘ | 7ZL1 | 14774 | 2023-04-28 | 2022-04-13 | 2.5 | 2.06 | 2.45 | 2.4 | 0.007 | 0.88 | 0.0 | 0.06 | 14.64 | 0.01 | 2.033 | 2.59 | 0.65 | 5.7 | 93.3 | 1.0 | -0.02 | 0.73 | 0.86 | 6.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27257 | 1720 | 24 | 0 | 8 | 379 | 13574 | logfile |
✘ | 7MYo | 24082 | 2023-04-21 | 2021-05-21 | 2.92 | 3.27 | 2.93 | 3.3 | 0.005 | 0.89 | 0.0 | 0.05 | 15.08 | 0.01 | 2.225 | 9.92 | 0.59 | 5.9 | 94.1 | 0.0 | -1.97 | 0.57 | 0.66 | 0.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10634 | 1278 | 2 | 0 | 1 | 0 | 0 | logfile |
✘ | 7DR1 | 30821 | 2023-04-26 | 2020-12-25 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22177 | 2114 | 18 | 0 | 108 | 0 | 0 | logfile |
✘ | 7XT9 | 33443 | 2023-04-23 | 2022-05-16 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14875 | 927 | 4 | 0 | 7 | 0 | 7351 | logfile |