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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8EXQ | 28659 | 2024-03-14 | 2022-10-25 | 4.9 | 5.40 | 5.55 | 6.0 | 0.020 | 1.74 | 0.0 | 0.10 | 10.28 | 0.01 | 2.002 | 1.81 | 0.00 | 2.5 | 97.3 | 0.2 | 0.34 | 0.52 | 0.45 | — | 5.9 | 0.003 | 0.72 | 0.0 | 0.04 | 12.63 | 0.00 | 2.230 | 15.59 | 0.00 | 4.5 | 95.3 | 0.2 | -0.38 | 2.51 | 0.57 | 0.62 | — | 9304 | 1108 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 5LJo | 4061 | 2024-03-19 | 2016-07-19 | 4.9 | 7.28 | — | 5.9 | 0.014 | 1.69 | 1.0 | 0.08 | 11.01 | 0.01 | 2.147 | 5.45 | 0.15 | 9.4 | 86.8 | 3.8 | -2.52 | 0.69 | 0.58 | — | 5.8 | 0.004 | 0.72 | 0.0 | 0.04 | 12.90 | 0.01 | 1.933 | 21.13 | 0.00 | 12.9 | 86.8 | 0.3 | -2.47 | 1.33 | 0.80 | 0.80 | — | 24947 | 1624 | 5 | 0 | 0 | 0 | 12255 | logfile |
✔ | 8SAL | 40273 | 2024-03-17 | 2023-04-01 | 4.9 | 5.54 | 4.74 | 5.0 | 0.005 | 0.89 | 0.0 | 0.05 | 13.67 | 0.01 | 2.065 | 4.56 | 0.00 | 8.4 | 91.4 | 0.1 | -2.31 | 0.76 | 0.70 | — | 4.9 | 0.006 | 0.97 | 0.0 | 0.05 | 13.56 | 0.01 | 1.992 | 37.35 | 0.00 | 11.1 | 88.7 | 0.2 | -2.29 | 2.71 | 0.80 | 0.79 | — | 18435 | 2343 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JGG | 22326 | 2024-03-10 | 2020-07-19 | 4.88 | 8.00 | — | 7.7 | 0.002 | 0.46 | 0.0 | 0.03 | 13.22 | 0.00 | 1.988 | 54.49 | 0.00 | 3.3 | 96.5 | 0.2 | 1.67 | 0.66 | 0.64 | — | 7.5 | 0.002 | 0.44 | 0.0 | 0.03 | 12.76 | 0.00 | 1.973 | 75.99 | 0.00 | 4.7 | 95.3 | 0.0 | 1.92 | 1.72 | 0.66 | 0.70 | — | 4210 | 506 | 1 | 0 | 0 | 0 | 28 | logfile |
✔ | 8iER | 35391 | 2024-03-16 | 2023-02-15 | 4.87 | 5.08 | 4.32 | 4.9 | 0.002 | 0.53 | 0.0 | 0.04 | 12.91 | 0.00 | 1.978 | 6.35 | 0.00 | 7.4 | 92.3 | 0.3 | -0.61 | 0.48 | 0.46 | — | 4.9 | 0.002 | 0.56 | 0.0 | 0.04 | 12.81 | 0.00 | 1.919 | 8.70 | 0.00 | 10.5 | 89.2 | 0.3 | -1.03 | 1.27 | 0.52 | 0.56 | — | 15257 | 967 | 2 | 0 | 1 | 0 | 7758 | logfile |
✘ | 6VY2 | 21456 | 2024-03-18 | 2020-02-25 | 4.86 | 6.05 | — | 5.2 | 0.007 | 1.11 | 0.0 | 0.08 | 22.30 | 0.00 | 2.056 | 18.44 | 4.96 | 5.7 | 93.8 | 0.5 | -2.41 | 0.82 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21426 | 2442 | 66 | 0 | 180 | 0 | 0 | logfile |
✔ | 7MDM | 23775 | 2024-03-22 | 2021-04-05 | 4.86 | 5.09 | — | 5.0 | 0.005 | 1.19 | 0.0 | 0.07 | 15.37 | 0.01 | 2.261 | 9.38 | 0.03 | 7.9 | 92.1 | 0.0 | -3.53 | 0.82 | 0.77 | — | 4.9 | 0.003 | 0.83 | 0.0 | 0.05 | 14.47 | 0.01 | 2.060 | 25.30 | 0.00 | 8.6 | 91.4 | 0.0 | -1.85 | 2.40 | 0.83 | 0.79 | — | 31986 | 4051 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 8C9A | 16507 | 2024-03-17 | 2023-01-21 | 4.86 | 5.39 | 4.92 | 4.8 | 0.001 | 0.45 | 0.0 | 0.04 | 22.91 | 0.00 | 1.924 | 6.58 | 0.23 | 3.6 | 96.4 | 0.0 | 1.73 | 0.82 | 0.76 | — | 4.8 | 0.008 | 0.97 | 0.0 | 0.06 | 25.39 | 0.01 | 1.977 | 53.82 | 0.00 | 9.1 | 90.9 | 0.0 | -2.33 | 2.13 | 0.85 | 0.85 | — | 18059 | 525 | 7 | 650 | 0 | 0 | 0 | logfile |
✔ | 6S1N | 10081 | 2024-03-18 | 2019-06-19 | 4.86 | 4.98 | — | 4.8 | 0.009 | 1.13 | 2.0 | 0.06 | 18.02 | 0.01 | 1.929 | 9.59 | 0.83 | 6.3 | 93.4 | 0.4 | -3.47 | 0.73 | 0.53 | — | 4.8 | 0.003 | 0.76 | 0.0 | 0.04 | 16.27 | 0.01 | 2.148 | 16.98 | 0.00 | 5.1 | 94.8 | 0.1 | -1.06 | 3.67 | 0.83 | 0.74 | — | 19726 | 2399 | 11 | 50 | 3 | 0 | 0 | logfile |
✔ | 6HE4 | 0209 | 2024-03-15 | 2018-08-20 | 4.85 | 4.88 | — | 4.8 | 0.036 | 3.65 | 111.0 | 0.21 | 19.33 | 0.03 | 1.953 | 1.83 | 3.66 | 6.4 | 89.5 | 4.1 | -2.84 | 0.55 | 0.56 | — | 4.8 | 0.004 | 0.99 | 0.0 | 0.05 | 15.13 | 0.01 | 1.872 | 28.99 | 0.00 | 8.4 | 90.9 | 0.7 | -1.36 | 1.95 | 0.58 | 0.77 | — | 12684 | 1602 | 11 | 0 | 10 | 0 | 0 | logfile |
✔ | 7NK2 | 12429 | 2024-03-20 | 2021-02-17 | 4.84 | 4.93 | — | 4.8 | 0.004 | 0.73 | 2.0 | 0.05 | 14.37 | 0.01 | 1.907 | 8.81 | 0.32 | 4.3 | 95.7 | 0.0 | -0.71 | 0.61 | 0.43 | — | 4.8 | 0.004 | 0.69 | 0.0 | 0.04 | 14.51 | 0.00 | 1.824 | 19.86 | 0.00 | 6.7 | 93.3 | 0.0 | -1.01 | 4.60 | 0.73 | 0.67 | — | 28776 | 1794 | 6 | 23 | 0 | 0 | 13868 | logfile |
✔ | 6LHW | 0901 | 2024-03-16 | 2019-12-10 | 4.84 | 5.29 | — | 4.6 | 0.008 | 1.37 | 1.0 | 0.05 | 5.28 | 0.00 | 1.530 | 14.43 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.64 | 0.56 | — | 4.6 | 0.008 | 1.29 | 0.0 | 0.04 | 6.56 | 0.00 | 2.027 | 44.00 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.20 | 0.83 | 0.64 | — | 7644 | 0 | 3 | 0 | 1541 | 0 | 0 | logfile |
✔ | 7NJ7 | 12375 | 2024-03-20 | 2021-02-16 | 4.82 | 5.23 | — | 4.8 | 0.004 | 0.73 | 1.0 | 0.04 | 14.45 | 0.01 | 1.907 | 8.72 | 0.19 | 4.3 | 95.7 | 0.0 | -0.72 | 0.74 | 0.46 | — | 4.9 | 0.002 | 0.60 | 0.0 | 0.04 | 14.23 | 0.00 | 1.874 | 16.32 | 0.00 | 4.0 | 96.0 | 0.0 | -0.47 | 2.33 | 0.82 | 0.63 | — | 28818 | 1797 | 6 | 23 | 0 | 0 | 13868 | logfile |
✔ | 6B5V | 7058 | 2024-03-17 | 2017-09-29 | 4.8 | 4.85 | — | 4.8 | 0.008 | 1.23 | 0.0 | 0.06 | 14.29 | 0.01 | 2.333 | 9.06 | 3.55 | 5.9 | 94.1 | 0.0 | -4.79 | 0.61 | 0.72 | — | 4.8 | 0.002 | 0.76 | 0.0 | 0.04 | 12.87 | 0.00 | 2.197 | 11.17 | 0.00 | 5.0 | 95.0 | 0.0 | -1.70 | 0.80 | 0.69 | 0.80 | — | 18933 | 2356 | 8 | 0 | 5 | 0 | 0 | logfile |
✔ | 7Ro3 | 24586 | 2024-03-17 | 2021-07-30 | 4.8 | 4.78 | — | 4.4 | 0.004 | 0.65 | 0.0 | 0.05 | 12.47 | 0.01 | 2.358 | 11.99 | 1.33 | 4.3 | 95.7 | 0.0 | 1.70 | 0.67 | 0.84 | — | 4.4 | 0.004 | 0.73 | 0.0 | 0.05 | 11.54 | 0.01 | 2.205 | 18.66 | 0.00 | 6.5 | 93.5 | 0.0 | 1.30 | 2.09 | 0.68 | 0.85 | — | 137200 | 18800 | 200 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CTF | 30463 | 2024-03-16 | 2020-08-18 | 4.8 | 4.92 | — | 4.8 | 0.009 | 1.36 | 0.0 | 0.06 | 19.00 | 0.01 | 2.264 | 6.48 | 8.84 | 6.9 | 93.1 | 0.1 | -4.50 | 0.77 | 0.73 | — | 4.7 | 0.003 | 0.78 | 0.0 | 0.04 | 14.56 | 0.00 | 2.090 | 17.27 | 0.12 | 6.3 | 93.7 | 0.0 | -0.83 | 3.95 | 0.79 | 0.78 | — | 14504 | 1775 | 7 | 0 | 2 | 0 | 0 | logfile |
✔ | 5Z1F | 6875 | 2024-03-11 | 2017-12-26 | 4.8 | 4.85 | 4.58 | 4.8 | 0.006 | 0.87 | 0.0 | 0.05 | 13.13 | 0.01 | 2.213 | 25.36 | 5.04 | 9.8 | 89.2 | 1.0 | -4.90 | 0.60 | 0.76 | — | 4.8 | 0.003 | 0.81 | 0.0 | 0.04 | 11.74 | 0.01 | 2.234 | 14.96 | 0.00 | 6.4 | 93.6 | 0.0 | 0.10 | 1.39 | 0.59 | 0.77 | — | 8480 | 1202 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 5UK2 | 8564 | 2024-03-22 | 2017-01-19 | 4.8 | 4.64 | — | 4.6 | 0.012 | 1.36 | 0.0 | 0.07 | 12.49 | 0.01 | 2.083 | 3.96 | 0.16 | 8.7 | 91.1 | 0.1 | -4.11 | 0.80 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33948 | 2196 | 21 | 0 | 33 | 0 | 16401 | logfile |
✔ | 5FNA | 3241 | 2024-03-10 | 2015-11-11 | 4.8 | 4.43 | — | 4.2 | 0.013 | 1.51 | 0.0 | 0.08 | 12.32 | 0.01 | 2.219 | 36.54 | 0.00 | 6.0 | 94.0 | 0.0 | -1.83 | 0.48 | 0.71 | — | 4.2 | 0.003 | 0.80 | 0.0 | 0.04 | 13.82 | 0.00 | 2.287 | 18.96 | 0.00 | 7.2 | 92.8 | 0.0 | 0.38 | 1.93 | 0.50 | 0.78 | — | 5328 | 680 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SYJ | 25530 | 2024-03-17 | 2021-11-25 | 4.8 | 3.85 | 4.49 | 3.7 | 0.003 | 0.79 | 0.0 | 0.04 | 21.81 | 0.01 | 2.240 | 5.37 | 0.02 | 6.1 | 93.9 | 0.0 | -2.97 | 0.71 | 0.63 | — | 3.6 | 0.003 | 0.60 | 0.0 | 0.03 | 21.87 | 0.00 | 2.000 | 15.62 | 0.00 | 6.9 | 93.1 | 0.0 | -1.42 | 1.29 | 0.74 | 0.68 | — | 78761 | 4891 | 38 | 1859 | 2 | 0 | 0 | logfile |