Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	5TAV	8386	2023-04-24	2016-09-10	4.8	4.96	5.58	4.7	0.004	0.89	4.0	0.05	9.80	0.01	1.373	4.75	0.39	9.7	90.1	0.2	-4.80	0.77	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	121452	13500	12	0	3716	0	0	logfile
✔	6YRG	10889	2023-04-26	2020-04-20	4.8	6.94	—	7.9	0.009	1.41	18.0	0.08	13.69	0.01	1.270	31.61	0.48	9.4	90.3	0.3	-2.26	0.66	0.32	—	7.9	0.003	0.74	0.0	0.04	13.07	0.00	2.157	15.69	0.00	9.7	90.2	0.1	-1.41	3.45	0.74	0.50	—	21992	2736	4	0	0	0	0	logfile
✔	6W4o	21535	2023-04-28	2020-03-11	4.8	5.05	4.72	4.7	0.004	0.78	1.0	0.05	10.85	0.00	0.834	15.75	0.91	3.0	96.7	0.2	-1.53	0.83	0.70	—	4.7	0.004	0.75	0.0	0.05	13.01	0.00	2.134	21.61	0.00	2.4	97.4	0.2	0.49	1.35	0.89	0.82	—	14475	1789	13	0	0	0	0	logfile
✔	6DJP	7939	2023-04-20	2018-05-25	4.8	5.02	—	4.8	0.012	2.01	0.0	0.08	4.72	0.01	2.368	0.45	0.00	4.6	95.4	0.0	-0.74	0.76	0.65	—	4.8	0.007	1.19	0.0	0.05	8.16	0.01	2.172	17.74	0.00	22.8	77.2	0.1	-4.06	1.20	0.82	0.76	—	7307	1393	16	0	23	0	0	logfile
✔	7o24	12698	2023-04-21	2021-03-30	4.8	4.54	4.80	4.4	0.003	0.62	0.0	0.04	17.15	0.00	2.084	14.17	1.38	3.2	96.6	0.2	0.00	0.76	0.80	—	4.4	0.003	0.61	0.0	0.04	16.65	0.00	2.140	14.17	0.11	4.8	95.1	0.2	-0.28	0.98	0.76	0.81	—	9318	1090	5	46	0	0	0	logfile
✔	5o9G	3765	2023-04-25	2017-06-19	4.8	5.07	4.71	10.4	0.003	0.48	0.0	0.03	22.47	0.00	2.194	7.39	0.36	9.1	90.8	0.1	-4.25	0.51	0.13	—	4.8	0.004	0.80	0.0	0.04	24.58	0.01	1.106	18.06	0.00	4.4	95.5	0.1	-1.54	2.61	0.86	0.77	—	19681	1610	11	324	2	0	0	logfile
✔	5M6S	3451	2023-04-19	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.6	0.003	0.63	0.0	0.03	18.81	0.00	1.995	10.68	0.00	6.2	93.8	0.0	2.64	2.46	0.03	0.08	—	1593	98	1	0	0	0	793	logfile
✔	6B5V	7058	2023-04-24	2017-09-29	4.8	4.85	—	4.8	0.008	1.23	0.0	0.06	13.98	0.01	2.333	9.06	3.55	5.9	94.1	0.0	-4.79	0.61	0.72	—	4.8	0.003	0.80	0.0	0.04	13.10	0.00	2.149	12.86	0.00	6.5	93.5	0.0	-1.76	0.89	0.70	0.81	—	18933	2356	8	0	5	0	0	logfile
✔	5Z1F	6875	2023-04-20	2017-12-26	4.8	4.85	4.58	4.8	0.006	0.87	0.0	0.05	13.13	0.01	2.213	25.36	5.04	9.8	89.2	1.0	-4.90	0.60	0.76	—	4.8	0.003	0.77	0.0	0.04	11.46	0.01	2.252	13.30	0.00	6.1	93.9	0.0	0.30	1.40	0.59	0.76	—	8480	1202	2	0	0	0	0	logfile
✔	6Y9Z	10742	2023-04-24	2020-03-10	4.8	5.22	4.55	6.0	0.012	1.07	3.0	0.11	13.05	0.01	1.631	10.65	0.45	1.9	98.0	0.0	-0.96	0.71	0.75	—	4.9	0.004	0.89	0.0	0.05	13.12	0.01	2.046	24.41	0.00	3.5	96.5	0.0	-0.81	3.50	0.74	0.80	—	18418	2364	13	0	0	0	0	logfile
✔	7NBX	12262	2023-04-26	2021-01-28	4.8	5.30	4.72	4.9	0.008	1.04	0.0	0.05	15.90	0.01	1.950	12.59	0.00	12.3	87.6	0.1	-4.49	0.76	0.82	—	4.9	0.004	0.64	0.0	0.04	14.15	0.00	1.865	13.30	0.00	9.7	90.3	0.0	-2.01	0.71	0.76	0.81	—	22637	1475	5	0	0	0	11129	logfile
✔	6QD2	4517	2023-04-26	2018-12-31	4.8	4.92	5.85	4.9	0.006	0.86	0.0	0.04	9.04	0.01	2.025	6.53	0.00	11.6	88.4	0.0	-4.60	0.35	0.62	—	4.9	0.004	0.68	0.0	0.04	10.92	0.00	2.087	11.59	0.00	9.1	90.9	0.0	-1.48	1.09	0.39	0.65	—	21746	1420	5	0	2	0	11100	logfile
✔	6D6V	7821	2023-04-24	2018-04-22	4.8	5.14	—	4.6	0.013	1.70	1.0	0.08	19.43	0.01	1.189	25.63	0.97	15.8	83.5	0.7	-4.28	0.84	0.74	—	4.6	0.004	0.82	0.0	0.04	19.09	0.00	2.055	31.43	0.00	15.8	84.2	0.0	-2.40	1.57	0.86	0.79	—	17317	1535	9	178	158	0	0	logfile
✔	7LBM	23255	2023-04-27	2021-01-08	4.8	3.22	—	2.3	0.009	1.08	22.0	0.06	16.06	0.01	1.016	31.82	1.26	11.3	88.0	0.7	-3.89	0.57	0.46	—	2.2	0.006	0.89	0.0	0.05	14.76	0.01	1.897	20.39	0.01	8.8	91.0	0.1	-1.14	1.50	0.61	0.59	—	129277	15887	68	128	19	0	0	logfile
✔	3JCA	6441	2023-04-22	2015-11-24	4.8	4.59	—	4.5	0.012	1.49	0.0	0.07	18.62	0.01	2.370	2.63	0.00	7.2	92.8	0.0	-1.87	0.75	0.75	—	4.5	0.003	0.67	0.0	0.04	19.55	0.01	2.058	15.25	0.10	5.1	94.9	0.0	-0.38	2.47	0.76	0.77	—	11466	1226	16	80	4	0	0	logfile
✔	7SYM	25533	2023-04-29	2021-11-25	4.8	3.64	4.44	3.5	0.003	0.83	1.0	0.04	15.76	0.01	2.245	5.29	0.00	5.3	94.7	0.0	-2.78	0.63	0.68	—	3.5	0.005	0.73	0.0	0.04	16.44	0.01	1.990	16.98	0.00	8.9	91.1	0.0	-1.62	0.52	0.64	0.70	—	78761	4891	38	1859	2	0	0	logfile
✔	6MZJ	9303	2023-04-22	2018-11-05	4.8	5.06	—	4.4	0.015	1.59	0.0	0.09	6.80	0.00	2.352	1.32	2.65	3.2	96.6	0.1	-0.18	0.70	0.72	—	4.5	0.006	1.16	0.0	0.05	7.35	0.01	2.136	10.22	0.00	12.0	87.9	0.1	-2.28	2.22	0.77	0.67	—	12653	2088	52	0	149	0	0	logfile
✘	5A7U	3079	2023-04-19	2015-07-10	4.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	455	27	1	0	1	0	231	logfile
✔	6HD5	0201	2023-04-21	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.004	0.81	0.0	0.04	11.92	0.01	2.072	21.86	0.00	6.4	93.5	0.1	-0.40	2.04	0.46	0.56	—	9707	1234	3	0	0	0	0	logfile
✔	3J03	5138	2023-04-21	2011-02-10	4.8	4.09	—	6.5	0.014	1.51	16.0	0.08	13.07	0.02	2.471	3.31	1.78	3.5	96.3	0.2	-1.89	0.66	0.44	—	5.8	0.003	0.82	0.0	0.04	14.05	0.01	2.286	21.54	0.00	3.1	96.9	0.0	-0.66	1.46	0.82	0.68	—	58640	7856	16	0	0	0	0	logfile

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