Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6DW0	8922	2022-12-12	2018-06-26	3.8	3.44	—	4.0	0.005	0.93	0.0	0.05	11.05	0.01	2.282	5.00	0.08	5.7	94.3	0.0	-3.98	0.46	0.73	1.86	4.0	0.004	0.96	0.0	0.05	15.94	0.00	2.060	21.37	0.74	6.1	93.9	0.0	-1.27	1.62	0.49	0.75	1.94	11929	1529	13	0	24	0	0	logfile
✔	6PBE	20291	2022-12-14	2019-06-13	3.78	4.21	—	4.1	0.006	1.02	0.0	0.05	16.23	0.01	2.248	4.10	1.18	8.2	91.8	0.0	-5.02	0.61	0.77	1.40	4.1	0.002	0.62	0.0	0.04	17.26	0.00	2.255	8.14	0.44	5.4	94.6	0.0	-1.11	1.91	0.64	0.75	1.29	19452	2416	8	0	8	0	0	logfile
✔	5XTD	6773	2022-12-13	2017-06-19	3.7	3.83	—	3.7	0.012	1.58	1.0	0.07	11.40	0.01	1.049	29.03	0.83	6.5	90.6	2.9	-1.69	0.75	0.72	2.51	3.7	0.004	0.81	0.0	0.04	15.22	0.01	2.119	18.59	0.48	6.5	92.9	0.6	-0.26	1.40	0.78	0.78	1.55	66789	8191	62	0	30	0	0	logfile
✔	5K10	8192	2022-12-12	2016-05-17	3.8	4.74	—	3.8	0.009	0.93	0.0	0.06	12.22	0.02	2.138	33.74	0.30	6.9	92.6	0.5	-4.07	0.80	0.57	0.98	3.8	0.004	0.84	0.0	0.04	16.06	0.00	2.179	26.92	0.15	3.8	95.9	0.3	-0.34	1.89	0.92	0.86	1.18	6338	794	4	0	2	0	0	logfile
✔	5K11	8193	2022-12-12	2016-05-17	3.8	4.50	—	3.8	0.012	1.23	0.0	0.06	12.12	0.01	2.061	29.69	0.30	6.1	93.4	0.5	-4.89	0.80	0.59	1.53	3.8	0.004	0.86	0.0	0.05	15.80	0.00	2.132	21.67	0.45	4.2	95.8	0.0	-0.45	1.58	0.90	0.84	1.18	6338	794	4	0	2	0	0	logfile
✔	6E10	8951	2022-12-12	2018-07-08	4.16	4.27	—	4.2	0.008	1.16	11.0	0.07	10.73	0.01	1.063	10.45	1.07	5.8	93.8	0.4	-4.45	0.79	0.72	—	4.1	0.003	0.70	0.0	0.04	12.87	0.00	2.097	14.53	0.02	5.9	94.0	0.2	-0.59	1.48	0.82	0.80	—	57352	6823	34	0	359	0	0	logfile
✔	5TJ5	8409	2022-12-13	2016-10-03	3.9	4.19	—	4.1	0.010	1.29	0.0	0.05	9.13	0.01	1.040	27.77	0.12	14.4	85.2	0.4	-6.37	0.62	0.69	1.87	4.1	0.004	0.90	0.0	0.04	12.82	0.00	2.067	15.62	0.86	7.0	92.8	0.2	0.29	1.75	0.63	0.74	1.29	14976	2102	14	0	365	0	0	logfile
✔	6T61	10381	2022-12-16	2019-10-17	3.7	3.68	—	3.6	0.006	0.93	0.0	0.05	15.61	0.01	0.321	8.35	0.00	8.1	91.9	0.0	-3.35	0.50	0.77	1.47	3.6	0.003	0.76	0.0	0.04	17.80	0.00	2.091	12.21	0.48	6.0	94.0	0.0	0.82	1.64	0.51	0.78	0.72	30978	3906	18	0	0	0	0	logfile
✔	5WPT	8882	2022-12-13	2017-08-07	3.75	3.87	—	3.8	0.008	1.03	0.0	0.05	11.16	0.01	2.276	2.56	0.24	8.1	91.7	0.2	-5.18	0.62	0.82	3.22	3.8	0.004	0.70	0.0	0.04	15.29	0.00	2.206	8.19	0.49	8.6	91.4	0.0	0.61	0.93	0.63	0.82	2.19	14889	1816	9	0	9	0	0	logfile
✔	6iUG	9734	2022-12-13	2018-11-28	3.9	3.96	—	3.8	0.005	0.90	0.0	0.05	10.73	0.01	2.105	7.72	0.96	8.4	91.6	0.0	-3.83	0.72	0.83	1.84	3.8	0.004	0.81	0.0	0.05	14.20	0.00	1.889	18.34	0.45	8.6	91.4	0.0	-1.15	0.78	0.72	0.84	1.55	14585	1855	10	0	10	0	0	logfile
✔	6J40	9777	2022-12-17	2019-01-07	3.8	4.30	—	3.8	0.022	1.96	4.0	0.18	19.08	0.01	1.376	17.83	0.33	4.5	95.5	0.0	-5.08	0.80	0.72	1.93	3.8	0.004	0.76	0.0	0.04	16.55	0.00	1.476	18.04	0.25	4.5	95.5	0.0	-0.13	0.71	0.84	0.78	1.59	96390	8392	120	0	1656	0	0	logfile
✔	6NT7	0504	2022-12-11	2019-01-28	4.0	4.27	—	4.1	0.008	0.91	0.0	0.05	14.13	0.01	2.238	5.64	0.00	6.2	93.8	0.0	-3.29	0.75	0.85	—	4.1	0.006	0.75	0.0	0.04	15.86	0.00	2.209	10.97	0.78	4.6	95.4	0.0	0.58	1.19	0.76	0.85	—	4729	588	3	0	1	0	0	logfile
✔	5WPQ	8881	2022-12-13	2017-08-07	3.64	3.71	—	3.7	0.005	0.96	0.0	0.05	11.37	0.01	2.310	2.10	0.49	5.9	94.1	0.0	-4.69	0.58	0.79	2.64	3.7	0.003	0.68	0.0	0.04	15.64	0.00	2.200	7.15	0.73	5.1	94.9	0.0	1.02	0.90	0.60	0.80	1.62	14889	1816	9	0	9	0	0	logfile
✔	6E11	8952	2022-12-12	2018-07-08	4.23	4.35	—	4.2	0.007	1.11	6.0	0.06	9.72	0.01	1.079	10.37	0.49	7.9	91.8	0.3	-4.77	0.79	0.73	—	4.2	0.003	0.69	0.0	0.04	12.59	0.00	2.070	13.71	0.02	7.1	92.8	0.1	-1.16	1.07	0.81	0.78	—	57401	6820	34	0	373	0	0	logfile
✔	6HRE	0259	2022-12-11	2018-09-26	3.2	2.74	2.87	3.3	0.019	1.47	0.0	0.11	13.34	0.01	2.474	6.57	0.00	12.0	88.0	0.0	-4.17	0.32	0.80	4.40	2.8	0.007	0.94	0.0	0.05	17.28	0.00	2.123	9.50	0.50	9.3	90.7	0.0	-3.49	0.81	0.29	0.78	3.87	3522	462	6	0	0	0	0	logfile
✔	6Y1A	10669	2022-12-11	2020-02-11	4.2	3.60	1.84	4.3	0.005	1.09	0.0	0.07	9.42	0.00	2.509	15.01	0.00	4.3	95.7	0.0	-4.99	0.53	0.63	—	4.2	0.005	0.76	0.0	0.04	11.27	0.00	2.048	15.89	0.00	9.8	90.2	0.0	-4.83	1.55	0.57	0.76	—	2960	400	32	0	16	0	0	logfile
✔	6A96	6998	2022-12-13	2018-07-11	3.51	4.46	—	4.3	0.008	0.95	0.0	0.06	10.88	0.01	2.158	6.36	0.22	7.3	92.7	0.0	-3.71	0.74	0.77	1.32	4.2	0.004	0.89	0.0	0.05	16.55	0.01	2.087	18.28	0.78	5.6	94.4	0.0	-1.40	3.53	0.76	0.80	1.58	17049	2043	19	0	44	0	0	logfile
✔	5JLF	8162	2022-12-13	2016-04-27	3.6	3.99	—	3.7	0.013	1.58	17.0	0.11	12.26	0.01	2.184	9.01	1.29	2.9	96.6	0.6	-0.70	0.67	0.69	2.49	3.7	0.004	0.74	0.0	0.04	14.97	0.00	1.941	13.80	0.58	3.7	96.0	0.3	-0.27	1.42	0.70	0.74	1.96	15800	1835	12	0	280	0	0	logfile
✔	5ZBo	6746	2022-12-16	2018-02-12	4.12	4.69	—	4.8	0.001	0.38	0.0	0.04	15.92	0.00	2.148	1.93	0.49	11.1	86.2	2.7	-4.88	0.71	0.60	—	4.1	0.004	0.80	0.0	0.04	13.19	0.00	2.084	21.72	0.00	6.6	93.4	0.0	-2.55	2.97	0.74	0.80	—	89100	10860	60	0	0	0	0	logfile
✔	6oSJ	20183	2022-12-11	2019-05-01	2.8	2.81	—	2.8	0.011	1.13	0.0	0.07	13.69	0.00	2.227	10.71	0.00	18.6	79.7	1.7	-4.71	0.50	0.79	4.82	2.8	0.003	0.75	0.0	0.06	16.79	0.00	2.235	9.22	5.81	13.4	86.6	0.0	-3.82	0.47	0.51	0.79	4.30	4210	610	10	0	0	0	0	logfile

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