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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6DW0 | 8922 | 2022-12-12 | 2018-06-26 | 3.8 | 3.44 | — | 4.0 | 0.005 | 0.93 | 0.0 | 0.05 | 11.05 | 0.01 | 2.282 | 5.00 | 0.08 | 5.7 | 94.3 | 0.0 | -3.98 | 0.46 | 0.73 | 1.86 | 4.0 | 0.004 | 0.96 | 0.0 | 0.05 | 15.94 | 0.00 | 2.060 | 21.37 | 0.74 | 6.1 | 93.9 | 0.0 | -1.27 | 1.62 | 0.49 | 0.75 | 1.94 | 11929 | 1529 | 13 | 0 | 24 | 0 | 0 | logfile |
✔ | 6PBE | 20291 | 2022-12-14 | 2019-06-13 | 3.78 | 4.21 | — | 4.1 | 0.006 | 1.02 | 0.0 | 0.05 | 16.23 | 0.01 | 2.248 | 4.10 | 1.18 | 8.2 | 91.8 | 0.0 | -5.02 | 0.61 | 0.77 | 1.40 | 4.1 | 0.002 | 0.62 | 0.0 | 0.04 | 17.26 | 0.00 | 2.255 | 8.14 | 0.44 | 5.4 | 94.6 | 0.0 | -1.11 | 1.91 | 0.64 | 0.75 | 1.29 | 19452 | 2416 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 5XTD | 6773 | 2022-12-13 | 2017-06-19 | 3.7 | 3.83 | — | 3.7 | 0.012 | 1.58 | 1.0 | 0.07 | 11.40 | 0.01 | 1.049 | 29.03 | 0.83 | 6.5 | 90.6 | 2.9 | -1.69 | 0.75 | 0.72 | 2.51 | 3.7 | 0.004 | 0.81 | 0.0 | 0.04 | 15.22 | 0.01 | 2.119 | 18.59 | 0.48 | 6.5 | 92.9 | 0.6 | -0.26 | 1.40 | 0.78 | 0.78 | 1.55 | 66789 | 8191 | 62 | 0 | 30 | 0 | 0 | logfile |
✔ | 5K10 | 8192 | 2022-12-12 | 2016-05-17 | 3.8 | 4.74 | — | 3.8 | 0.009 | 0.93 | 0.0 | 0.06 | 12.22 | 0.02 | 2.138 | 33.74 | 0.30 | 6.9 | 92.6 | 0.5 | -4.07 | 0.80 | 0.57 | 0.98 | 3.8 | 0.004 | 0.84 | 0.0 | 0.04 | 16.06 | 0.00 | 2.179 | 26.92 | 0.15 | 3.8 | 95.9 | 0.3 | -0.34 | 1.89 | 0.92 | 0.86 | 1.18 | 6338 | 794 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 5K11 | 8193 | 2022-12-12 | 2016-05-17 | 3.8 | 4.50 | — | 3.8 | 0.012 | 1.23 | 0.0 | 0.06 | 12.12 | 0.01 | 2.061 | 29.69 | 0.30 | 6.1 | 93.4 | 0.5 | -4.89 | 0.80 | 0.59 | 1.53 | 3.8 | 0.004 | 0.86 | 0.0 | 0.05 | 15.80 | 0.00 | 2.132 | 21.67 | 0.45 | 4.2 | 95.8 | 0.0 | -0.45 | 1.58 | 0.90 | 0.84 | 1.18 | 6338 | 794 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6E10 | 8951 | 2022-12-12 | 2018-07-08 | 4.16 | 4.27 | — | 4.2 | 0.008 | 1.16 | 11.0 | 0.07 | 10.73 | 0.01 | 1.063 | 10.45 | 1.07 | 5.8 | 93.8 | 0.4 | -4.45 | 0.79 | 0.72 | — | 4.1 | 0.003 | 0.70 | 0.0 | 0.04 | 12.87 | 0.00 | 2.097 | 14.53 | 0.02 | 5.9 | 94.0 | 0.2 | -0.59 | 1.48 | 0.82 | 0.80 | — | 57352 | 6823 | 34 | 0 | 359 | 0 | 0 | logfile |
✔ | 5TJ5 | 8409 | 2022-12-13 | 2016-10-03 | 3.9 | 4.19 | — | 4.1 | 0.010 | 1.29 | 0.0 | 0.05 | 9.13 | 0.01 | 1.040 | 27.77 | 0.12 | 14.4 | 85.2 | 0.4 | -6.37 | 0.62 | 0.69 | 1.87 | 4.1 | 0.004 | 0.90 | 0.0 | 0.04 | 12.82 | 0.00 | 2.067 | 15.62 | 0.86 | 7.0 | 92.8 | 0.2 | 0.29 | 1.75 | 0.63 | 0.74 | 1.29 | 14976 | 2102 | 14 | 0 | 365 | 0 | 0 | logfile |
✔ | 6T61 | 10381 | 2022-12-16 | 2019-10-17 | 3.7 | 3.68 | — | 3.6 | 0.006 | 0.93 | 0.0 | 0.05 | 15.61 | 0.01 | 0.321 | 8.35 | 0.00 | 8.1 | 91.9 | 0.0 | -3.35 | 0.50 | 0.77 | 1.47 | 3.6 | 0.003 | 0.76 | 0.0 | 0.04 | 17.80 | 0.00 | 2.091 | 12.21 | 0.48 | 6.0 | 94.0 | 0.0 | 0.82 | 1.64 | 0.51 | 0.78 | 0.72 | 30978 | 3906 | 18 | 0 | 0 | 0 | 0 | logfile |
✔ | 5WPT | 8882 | 2022-12-13 | 2017-08-07 | 3.75 | 3.87 | — | 3.8 | 0.008 | 1.03 | 0.0 | 0.05 | 11.16 | 0.01 | 2.276 | 2.56 | 0.24 | 8.1 | 91.7 | 0.2 | -5.18 | 0.62 | 0.82 | 3.22 | 3.8 | 0.004 | 0.70 | 0.0 | 0.04 | 15.29 | 0.00 | 2.206 | 8.19 | 0.49 | 8.6 | 91.4 | 0.0 | 0.61 | 0.93 | 0.63 | 0.82 | 2.19 | 14889 | 1816 | 9 | 0 | 9 | 0 | 0 | logfile |
✔ | 6iUG | 9734 | 2022-12-13 | 2018-11-28 | 3.9 | 3.96 | — | 3.8 | 0.005 | 0.90 | 0.0 | 0.05 | 10.73 | 0.01 | 2.105 | 7.72 | 0.96 | 8.4 | 91.6 | 0.0 | -3.83 | 0.72 | 0.83 | 1.84 | 3.8 | 0.004 | 0.81 | 0.0 | 0.05 | 14.20 | 0.00 | 1.889 | 18.34 | 0.45 | 8.6 | 91.4 | 0.0 | -1.15 | 0.78 | 0.72 | 0.84 | 1.55 | 14585 | 1855 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 6J40 | 9777 | 2022-12-17 | 2019-01-07 | 3.8 | 4.30 | — | 3.8 | 0.022 | 1.96 | 4.0 | 0.18 | 19.08 | 0.01 | 1.376 | 17.83 | 0.33 | 4.5 | 95.5 | 0.0 | -5.08 | 0.80 | 0.72 | 1.93 | 3.8 | 0.004 | 0.76 | 0.0 | 0.04 | 16.55 | 0.00 | 1.476 | 18.04 | 0.25 | 4.5 | 95.5 | 0.0 | -0.13 | 0.71 | 0.84 | 0.78 | 1.59 | 96390 | 8392 | 120 | 0 | 1656 | 0 | 0 | logfile |
✔ | 6NT7 | 0504 | 2022-12-11 | 2019-01-28 | 4.0 | 4.27 | — | 4.1 | 0.008 | 0.91 | 0.0 | 0.05 | 14.13 | 0.01 | 2.238 | 5.64 | 0.00 | 6.2 | 93.8 | 0.0 | -3.29 | 0.75 | 0.85 | — | 4.1 | 0.006 | 0.75 | 0.0 | 0.04 | 15.86 | 0.00 | 2.209 | 10.97 | 0.78 | 4.6 | 95.4 | 0.0 | 0.58 | 1.19 | 0.76 | 0.85 | — | 4729 | 588 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 5WPQ | 8881 | 2022-12-13 | 2017-08-07 | 3.64 | 3.71 | — | 3.7 | 0.005 | 0.96 | 0.0 | 0.05 | 11.37 | 0.01 | 2.310 | 2.10 | 0.49 | 5.9 | 94.1 | 0.0 | -4.69 | 0.58 | 0.79 | 2.64 | 3.7 | 0.003 | 0.68 | 0.0 | 0.04 | 15.64 | 0.00 | 2.200 | 7.15 | 0.73 | 5.1 | 94.9 | 0.0 | 1.02 | 0.90 | 0.60 | 0.80 | 1.62 | 14889 | 1816 | 9 | 0 | 9 | 0 | 0 | logfile |
✔ | 6E11 | 8952 | 2022-12-12 | 2018-07-08 | 4.23 | 4.35 | — | 4.2 | 0.007 | 1.11 | 6.0 | 0.06 | 9.72 | 0.01 | 1.079 | 10.37 | 0.49 | 7.9 | 91.8 | 0.3 | -4.77 | 0.79 | 0.73 | — | 4.2 | 0.003 | 0.69 | 0.0 | 0.04 | 12.59 | 0.00 | 2.070 | 13.71 | 0.02 | 7.1 | 92.8 | 0.1 | -1.16 | 1.07 | 0.81 | 0.78 | — | 57401 | 6820 | 34 | 0 | 373 | 0 | 0 | logfile |
✔ | 6HRE | 0259 | 2022-12-11 | 2018-09-26 | 3.2 | 2.74 | 2.87 | 3.3 | 0.019 | 1.47 | 0.0 | 0.11 | 13.34 | 0.01 | 2.474 | 6.57 | 0.00 | 12.0 | 88.0 | 0.0 | -4.17 | 0.32 | 0.80 | 4.40 | 2.8 | 0.007 | 0.94 | 0.0 | 0.05 | 17.28 | 0.00 | 2.123 | 9.50 | 0.50 | 9.3 | 90.7 | 0.0 | -3.49 | 0.81 | 0.29 | 0.78 | 3.87 | 3522 | 462 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Y1A | 10669 | 2022-12-11 | 2020-02-11 | 4.2 | 3.60 | 1.84 | 4.3 | 0.005 | 1.09 | 0.0 | 0.07 | 9.42 | 0.00 | 2.509 | 15.01 | 0.00 | 4.3 | 95.7 | 0.0 | -4.99 | 0.53 | 0.63 | — | 4.2 | 0.005 | 0.76 | 0.0 | 0.04 | 11.27 | 0.00 | 2.048 | 15.89 | 0.00 | 9.8 | 90.2 | 0.0 | -4.83 | 1.55 | 0.57 | 0.76 | — | 2960 | 400 | 32 | 0 | 16 | 0 | 0 | logfile |
✔ | 6A96 | 6998 | 2022-12-13 | 2018-07-11 | 3.51 | 4.46 | — | 4.3 | 0.008 | 0.95 | 0.0 | 0.06 | 10.88 | 0.01 | 2.158 | 6.36 | 0.22 | 7.3 | 92.7 | 0.0 | -3.71 | 0.74 | 0.77 | 1.32 | 4.2 | 0.004 | 0.89 | 0.0 | 0.05 | 16.55 | 0.01 | 2.087 | 18.28 | 0.78 | 5.6 | 94.4 | 0.0 | -1.40 | 3.53 | 0.76 | 0.80 | 1.58 | 17049 | 2043 | 19 | 0 | 44 | 0 | 0 | logfile |
✔ | 5JLF | 8162 | 2022-12-13 | 2016-04-27 | 3.6 | 3.99 | — | 3.7 | 0.013 | 1.58 | 17.0 | 0.11 | 12.26 | 0.01 | 2.184 | 9.01 | 1.29 | 2.9 | 96.6 | 0.6 | -0.70 | 0.67 | 0.69 | 2.49 | 3.7 | 0.004 | 0.74 | 0.0 | 0.04 | 14.97 | 0.00 | 1.941 | 13.80 | 0.58 | 3.7 | 96.0 | 0.3 | -0.27 | 1.42 | 0.70 | 0.74 | 1.96 | 15800 | 1835 | 12 | 0 | 280 | 0 | 0 | logfile |
✔ | 5ZBo | 6746 | 2022-12-16 | 2018-02-12 | 4.12 | 4.69 | — | 4.8 | 0.001 | 0.38 | 0.0 | 0.04 | 15.92 | 0.00 | 2.148 | 1.93 | 0.49 | 11.1 | 86.2 | 2.7 | -4.88 | 0.71 | 0.60 | — | 4.1 | 0.004 | 0.80 | 0.0 | 0.04 | 13.19 | 0.00 | 2.084 | 21.72 | 0.00 | 6.6 | 93.4 | 0.0 | -2.55 | 2.97 | 0.74 | 0.80 | — | 89100 | 10860 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oSJ | 20183 | 2022-12-11 | 2019-05-01 | 2.8 | 2.81 | — | 2.8 | 0.011 | 1.13 | 0.0 | 0.07 | 13.69 | 0.00 | 2.227 | 10.71 | 0.00 | 18.6 | 79.7 | 1.7 | -4.71 | 0.50 | 0.79 | 4.82 | 2.8 | 0.003 | 0.75 | 0.0 | 0.06 | 16.79 | 0.00 | 2.235 | 9.22 | 5.81 | 13.4 | 86.6 | 0.0 | -3.82 | 0.47 | 0.51 | 0.79 | 4.30 | 4210 | 610 | 10 | 0 | 0 | 0 | 0 | logfile |