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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7WSC | 32753 | 2024-03-10 | 2022-01-28 | 3.78 | 4.01 | — | 4.0 | 0.013 | 1.67 | 5.0 | 0.10 | 15.34 | 0.01 | 1.600 | 41.09 | 4.99 | 14.7 | 81.6 | 3.6 | -4.09 | 0.65 | 0.78 | 2.33 | 4.0 | 0.005 | 0.85 | 0.0 | 0.05 | 16.53 | 0.01 | 2.143 | 21.38 | 6.65 | 12.8 | 86.7 | 0.5 | -2.74 | 1.23 | 0.64 | 0.78 | 1.89 | 3369 | 422 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6VTK | 21380 | 2024-03-15 | 2020-02-12 | 2.82 | 3.35 | — | 3.3 | 0.005 | 0.82 | 0.0 | 0.05 | 9.13 | 0.01 | 2.287 | 3.10 | 0.00 | 3.2 | 96.8 | 0.0 | -4.44 | 0.71 | 0.81 | 4.37 | 3.3 | 0.003 | 0.62 | 0.0 | 0.04 | 13.93 | 0.00 | 2.252 | 6.44 | 1.50 | 1.9 | 98.1 | 0.0 | -0.14 | 1.20 | 0.70 | 0.83 | 3.83 | 10686 | 1338 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7T11 | 25587 | 2024-03-11 | 2021-11-30 | 2.7 | 2.94 | — | 3.0 | 0.004 | 0.61 | 0.0 | 0.04 | 10.83 | 0.00 | 2.107 | 3.46 | 0.27 | 2.4 | 97.6 | 0.0 | 0.96 | 0.60 | 0.74 | 3.90 | 3.0 | 0.002 | 0.52 | 0.0 | 0.04 | 13.40 | 0.00 | 2.239 | 3.20 | 1.47 | 2.4 | 97.6 | 0.0 | 1.41 | 0.39 | 0.62 | 0.79 | 3.19 | 8151 | 1132 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 7SL7 | 25193 | 2024-03-17 | 2021-10-22 | 3.1 | 3.35 | — | 3.4 | 0.002 | 0.56 | 0.0 | 0.04 | 13.08 | 0.00 | 2.149 | 8.91 | 0.24 | 5.5 | 94.2 | 0.3 | -0.86 | 0.77 | 0.82 | 3.06 | 3.3 | 0.003 | 0.59 | 0.0 | 0.04 | 15.10 | 0.00 | 2.192 | 10.46 | 1.56 | 6.1 | 93.9 | 0.0 | -0.80 | 0.97 | 0.77 | 0.85 | 2.84 | 14732 | 1826 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MHZ | 23837 | 2024-03-10 | 2021-04-16 | 3.2 | 3.82 | — | 3.7 | 0.005 | 0.77 | 0.0 | 1.63 | 49.49 | 0.00 | 2.210 | 7.55 | 0.00 | 3.4 | 96.6 | 0.0 | 1.45 | 0.61 | 0.79 | 2.94 | 3.7 | 0.002 | 2.50 | 0.0 | 0.25 | 33.72 | 0.00 | 2.166 | 6.11 | 1.56 | 2.7 | 97.3 | 0.0 | 1.84 | 0.35 | 0.60 | 0.79 | 2.65 | 6189 | 723 | 6 | 0 | 15 | 0 | 0 | logfile |
✔ | 7AK5 | 11810 | 2024-03-13 | 2020-09-29 | 3.17 | 2.97 | 3.17 | 3.1 | 0.005 | 0.73 | 0.0 | 1.04 | 15.54 | 0.00 | 1.865 | 7.38 | 0.01 | 5.9 | 94.0 | 0.0 | -3.68 | 0.66 | 0.82 | 3.16 | 3.1 | 0.008 | 1.60 | 0.0 | 0.31 | 16.83 | 0.00 | 2.133 | 8.09 | 1.67 | 3.5 | 96.5 | 0.0 | 0.43 | 1.48 | 0.68 | 0.86 | 2.55 | 65895 | 8069 | 64 | 0 | 28 | 0 | 0 | logfile |
✔ | 8G6W | 29786 | 2024-03-22 | 2023-02-16 | 2.02 | 2.04 | 2.01 | 2.0 | 0.006 | 0.81 | 0.0 | 0.04 | 23.38 | 0.02 | 1.223 | 9.47 | 6.74 | 4.1 | 95.8 | 0.1 | -2.71 | 0.75 | 0.81 | 4.45 | 2.0 | 0.006 | 0.91 | 0.0 | 0.05 | 23.12 | 0.01 | 1.704 | 8.34 | 3.04 | 4.4 | 95.5 | 0.1 | -0.46 | 0.49 | 0.78 | 0.87 | 4.78 | 145749 | 5585 | 97 | 4556 | 348 | 3659 | 0 | logfile |
✔ | 8AB7 | 15313 | 2024-03-22 | 2022-07-04 | 3.3 | 2.57 | 3.15 | 3.1 | 0.013 | 1.99 | 78.0 | 0.12 | 19.18 | 0.01 | 1.874 | 7.05 | 5.54 | 2.9 | 97.0 | 0.1 | -1.88 | 0.61 | 0.84 | 3.31 | 3.0 | 0.004 | 0.62 | 0.0 | 0.04 | 17.93 | 0.00 | 2.048 | 10.26 | 2.94 | 2.2 | 97.7 | 0.1 | 1.08 | 1.33 | 0.64 | 0.84 | 2.88 | 33654 | 4124 | 34 | 0 | 36 | 0 | 0 | logfile |
✔ | 7UZ7 | 26881 | 2024-03-21 | 2022-05-08 | 2.9 | 3.46 | 3.07 | 3.4 | 0.005 | 0.61 | 0.0 | 0.04 | 13.46 | 0.01 | 2.121 | 9.12 | 0.00 | 3.5 | 96.5 | 0.0 | 0.04 | 0.71 | 0.78 | 2.76 | 3.4 | 0.004 | 0.60 | 0.0 | 0.04 | 14.50 | 0.00 | 2.176 | 9.88 | 1.60 | 3.8 | 96.1 | 0.0 | 0.03 | 0.36 | 0.69 | 0.80 | 2.48 | 30552 | 3861 | 15 | 0 | 45 | 0 | 0 | logfile |
✔ | 8ADi | 15363 | 2024-03-19 | 2022-07-08 | 3.4 | 3.67 | 3.39 | 3.7 | 0.003 | 0.52 | 0.0 | 0.04 | 14.25 | 0.01 | 1.491 | 4.93 | 0.08 | 4.4 | 95.6 | 0.0 | -0.36 | 0.69 | 0.83 | 3.58 | 3.7 | 0.004 | 0.48 | 0.0 | 0.04 | 15.04 | 0.00 | 1.958 | 5.66 | 1.03 | 5.8 | 94.2 | 0.0 | -0.35 | 0.26 | 0.67 | 0.85 | 3.37 | 23141 | 1505 | 6 | 0 | 0 | 0 | 11353 | logfile |
✔ | 8Go8 | 34173 | 2024-03-15 | 2022-08-24 | 3.41 | 3.65 | 3.44 | 3.6 | 0.004 | 0.61 | 0.0 | 0.04 | 12.95 | 0.00 | 2.253 | 5.19 | 0.00 | 2.7 | 97.3 | 0.0 | 1.03 | 0.74 | 0.81 | 2.28 | 3.7 | 0.003 | 0.56 | 0.0 | 0.04 | 15.05 | 0.00 | 2.212 | 7.28 | 0.98 | 3.9 | 96.1 | 0.0 | 0.56 | 0.61 | 0.76 | 0.84 | 2.51 | 11505 | 1520 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7D4Q | 30576 | 2024-03-18 | 2020-09-24 | 2.74 | 2.99 | 2.80 | 3.0 | 0.009 | 0.78 | 0.0 | 0.04 | 12.26 | 0.00 | 2.254 | 6.34 | 0.67 | 1.4 | 98.6 | 0.0 | 2.70 | 0.47 | 0.71 | 3.84 | 3.0 | 0.004 | 0.52 | 0.0 | 0.04 | 15.37 | 0.00 | 2.173 | 5.53 | 0.88 | 1.7 | 98.3 | 0.0 | 2.49 | 0.37 | 0.69 | 0.88 | 4.24 | 22388 | 2672 | 8 | 0 | 24 | 0 | 0 | logfile |
✔ | 7N4U | 24178 | 2024-03-16 | 2021-06-04 | 3.34 | 3.91 | — | 3.8 | 0.014 | 1.80 | 0.0 | 0.29 | 17.76 | 0.01 | 2.102 | 4.84 | 1.79 | 5.3 | 94.5 | 0.2 | -2.74 | 0.58 | 0.74 | 1.92 | 3.8 | 0.003 | 0.57 | 0.0 | 0.04 | 15.14 | 0.00 | 2.230 | 6.39 | 2.96 | 3.2 | 96.8 | 0.0 | 0.64 | 0.97 | 0.67 | 0.84 | 1.86 | 15396 | 1906 | 10 | 0 | 28 | 0 | 0 | logfile |
✔ | 7A5V | 11657 | 2024-03-18 | 2020-08-22 | 1.7 | 1.73 | 1.69 | 1.8 | 0.014 | 1.59 | 0.0 | 0.09 | 14.87 | 0.02 | 0.000 | 2.35 | 0.48 | 2.2 | 97.8 | 0.0 | -0.05 | 0.61 | 0.79 | 6.90 | 1.8 | 0.002 | 0.61 | 0.0 | 0.05 | 13.88 | 0.00 | 0.000 | 4.57 | 0.57 | 0.5 | 99.5 | 0.0 | 2.01 | 0.35 | 0.71 | 0.86 | 6.31 | 21155 | 2275 | 30 | 0 | 85 | 1015 | 0 | logfile |
✔ | 5WQ8 | 6676 | 2024-03-11 | 2016-11-23 | 3.26 | 3.41 | — | 3.3 | 0.009 | 1.18 | 0.0 | 0.06 | 10.83 | 0.01 | 1.654 | 27.56 | 0.24 | 4.8 | 95.0 | 0.2 | -2.76 | 0.72 | 0.83 | 2.86 | 3.3 | 0.005 | 0.68 | 0.0 | 0.05 | 14.48 | 0.00 | 2.152 | 10.93 | 3.07 | 3.2 | 96.6 | 0.2 | -0.06 | 1.46 | 0.72 | 0.84 | 1.87 | 56460 | 7440 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WKA | 32564 | 2024-03-21 | 2022-01-08 | 3.64 | 3.27 | — | 3.6 | 0.005 | 0.79 | 1.0 | 0.05 | 8.14 | 0.01 | 2.353 | 3.18 | 0.23 | 3.7 | 96.1 | 0.1 | -2.58 | 0.70 | 0.64 | 0.56 | 3.8 | 0.004 | 0.74 | 0.0 | 0.05 | 13.87 | 0.00 | 2.110 | 14.92 | 2.65 | 3.5 | 96.5 | 0.1 | -0.40 | 1.59 | 0.77 | 0.73 | 1.37 | 31353 | 4017 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YQZ | 34040 | 2024-03-20 | 2022-08-08 | 3.84 | 4.12 | 3.90 | 3.9 | 0.005 | 0.80 | 2.0 | 0.05 | 14.51 | 0.01 | 1.625 | 6.53 | 0.07 | 6.8 | 92.9 | 0.3 | -2.84 | 0.80 | 0.80 | 1.56 | 3.9 | 0.002 | 0.61 | 0.0 | 0.04 | 14.86 | 0.00 | 2.141 | 10.26 | 1.34 | 6.6 | 93.4 | 0.0 | -1.53 | 1.17 | 0.80 | 0.81 | 1.31 | 28266 | 3531 | 12 | 0 | 53 | 0 | 0 | logfile |
✔ | 6WDN | 21642 | 2024-03-15 | 2020-04-01 | 3.2 | 4.00 | — | 3.8 | 0.005 | 0.74 | 2.0 | 0.05 | 15.07 | 0.01 | 2.166 | 14.85 | 0.52 | 7.1 | 92.9 | 0.0 | -5.36 | 0.74 | 0.82 | 1.98 | 3.8 | 0.003 | 0.75 | 0.0 | 0.04 | 17.03 | 0.00 | 2.071 | 11.40 | 2.60 | 5.0 | 95.0 | 0.0 | -0.82 | 0.62 | 0.74 | 0.82 | 1.93 | 12612 | 1540 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WEE | 32448 | 2024-03-10 | 2021-12-23 | 4.0 | 4.09 | — | 4.1 | 0.005 | 0.72 | 0.0 | 0.04 | 12.68 | 0.01 | 2.116 | 8.35 | 0.00 | 4.5 | 95.5 | 0.0 | -1.60 | 0.48 | 0.80 | — | 4.0 | 0.004 | 0.71 | 0.0 | 0.05 | 15.53 | 0.00 | 2.073 | 11.84 | 3.77 | 7.6 | 92.4 | 0.0 | -1.48 | 0.45 | 0.48 | 0.82 | — | 3350 | 429 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7URi | 26713 | 2024-03-10 | 2022-04-22 | 2.6 | 2.67 | 2.95 | 2.6 | 0.009 | 1.37 | 0.0 | 0.12 | 30.06 | 0.01 | 2.201 | 7.31 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.05 | 0.34 | — | 2.6 | 0.007 | 1.42 | 0.0 | 0.07 | 28.72 | 0.01 | 2.070 | 25.42 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.08 | 0.08 | 0.38 | — | 1905 | 0 | 1 | 90 | 0 | 0 | 0 | logfile |