Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6D6V	7821	2023-08-15	2018-04-22	4.8	5.14	—	4.6	0.013	1.70	1.0	0.08	19.43	0.01	1.189	25.63	0.97	15.8	83.5	0.7	-4.28	0.84	0.74	—	4.6	0.004	0.82	0.0	0.04	19.09	0.00	2.055	31.43	0.00	15.8	84.2	0.0	-2.40	1.57	0.86	0.79	—	17317	1535	9	178	158	0	0	logfile
✔	7TKT	25981	2023-08-13	2022-01-17	3.6	3.75	3.75	3.7	0.007	1.26	0.0	0.04	18.72	0.01	2.224	6.30	0.00	4.7	95.3	0.0	0.63	0.72	0.81	2.05	3.8	0.003	0.70	0.0	0.04	17.80	0.00	2.189	7.87	0.00	4.7	95.3	0.0	1.10	1.94	0.71	0.81	2.16	13252	1560	8	0	56	0	0	logfile
✔	5A0Q	2981	2023-08-25	2015-04-22	3.5	3.34	—	3.3	0.019	2.22	14.0	0.11	15.42	0.02	0.702	33.75	1.99	4.5	95.1	0.4	-3.18	0.60	0.61	1.82	3.3	0.005	0.87	0.0	0.05	17.77	0.01	2.111	22.76	1.02	4.9	95.0	0.1	-1.73	0.98	0.64	0.64	1.06	43448	5582	34	0	6	0	0	logfile
✔	7K57	22676	2023-08-16	2020-09-16	3.7	4.17	3.78	4.0	0.007	1.03	0.0	0.06	15.81	0.01	2.107	6.10	0.94	5.9	94.1	0.0	-4.46	0.85	0.83	0.74	4.0	0.005	0.72	0.0	0.05	16.44	0.00	2.111	11.04	0.35	6.6	93.4	0.0	-0.88	0.56	0.85	0.83	0.69	70104	8892	12	0	0	0	0	logfile
✔	6XE6	22144	2023-08-10	2020-06-12	4.53	4.61	—	4.5	0.011	1.40	2.0	0.07	14.93	0.01	1.098	10.14	1.05	11.3	87.4	1.2	-4.98	0.52	0.76	—	4.5	0.003	0.78	0.0	0.04	13.64	0.00	2.148	13.39	0.15	9.2	90.3	0.5	-1.67	1.21	0.53	0.75	—	6530	826	1	0	6	0	0	logfile
✔	7LGW	23331	2023-08-12	2021-01-21	2.7	3.18	—	3.1	0.003	0.95	0.0	0.04	12.21	0.00	2.184	7.05	0.71	2.4	97.6	0.0	1.33	0.65	0.83	5.03	3.1	0.004	0.54	0.0	0.04	14.54	0.00	2.170	6.43	0.88	1.6	98.4	0.0	1.11	0.35	0.61	0.83	4.47	11390	1360	6	0	95	30	0	logfile
✔	7USF	26737	2023-08-15	2022-04-25	3.5	4.05	3.59	3.9	0.003	0.55	0.0	0.04	19.58	0.00	2.017	10.80	0.12	2.5	97.5	0.0	0.79	0.79	0.78	2.43	3.9	0.003	0.62	0.0	0.04	20.79	0.00	2.120	8.90	0.60	3.8	96.2	0.0	0.71	0.57	0.81	0.82	1.85	18988	1984	22	152	10	0	0	logfile
✔	8EJ5	28176	2023-08-09	2022-09-16	4.9	4.58	4.63	4.6	0.012	1.52	1.0	0.09	12.69	0.01	2.466	13.82	3.27	2.0	97.2	0.8	1.40	0.43	0.64	—	4.5	0.003	0.77	0.0	0.04	14.35	0.00	2.123	17.17	0.00	4.2	95.5	0.3	-0.12	2.26	0.46	0.75	—	5818	727	4	0	0	0	0	logfile
✔	7VSR	32114	2023-08-13	2021-10-27	4.5	4.64	4.47	3.4	0.005	0.72	0.0	0.04	13.45	0.01	1.817	11.43	1.90	3.0	97.0	0.0	-0.26	0.77	0.55	—	3.4	0.004	0.61	0.0	0.04	12.83	0.00	1.740	17.65	0.00	5.5	94.5	0.0	-0.36	2.68	0.88	0.77	—	66142	4040	20	0	12	0	32736	logfile
✔	7MQR	23950	2023-08-13	2021-05-06	4.1	4.43	4.11	4.2	0.007	1.32	0.0	0.07	14.72	0.01	2.382	3.72	0.60	9.7	89.9	0.3	-3.42	0.85	0.80	—	4.2	0.002	0.63	0.0	0.04	13.96	0.00	2.239	9.80	0.00	7.1	92.7	0.2	-1.15	0.47	0.85	0.82	—	14878	1810	12	0	20	0	0	logfile
✔	5oiK	3817	2023-08-24	2017-07-18	3.7	4.15	3.66	3.6	0.011	1.07	0.0	0.06	12.15	0.01	1.841	11.63	0.33	4.3	95.5	0.2	-3.26	0.89	0.83	2.24	3.7	0.003	0.73	0.0	0.04	14.89	0.00	2.029	12.37	0.23	4.1	95.9	0.0	0.46	1.60	0.89	0.84	1.62	37988	4513	23	106	9	0	0	logfile
✔	7FB3	31513	2023-08-17	2021-07-08	3.1	3.73	—	3.7	0.003	0.65	0.0	0.04	14.25	0.00	2.114	9.15	0.23	8.2	91.8	0.0	-4.11	0.74	0.81	2.06	3.6	0.003	0.59	0.0	0.04	15.86	0.00	2.103	8.31	0.12	6.2	93.8	0.0	-1.30	1.98	0.73	0.81	1.95	22920	2936	3	0	0	0	0	logfile
✔	7Z14	14440	2023-08-14	2022-02-24	3.15	3.57	—	3.5	0.004	0.72	1.0	0.05	12.89	0.00	2.128	10.06	0.00	4.4	95.6	0.0	-0.09	0.62	0.79	3.59	3.5	0.003	0.65	1.0	0.04	15.38	0.00	2.217	9.74	0.28	3.9	96.1	0.0	0.22	1.21	0.64	0.82	3.40	15856	1913	13	0	28	0	0	logfile
✔	6NY1	8994	2023-08-11	2019-02-10	4.2	4.56	—	4.3	0.007	1.11	0.0	0.06	21.20	0.01	2.099	9.52	0.33	18.6	81.0	0.4	-4.84	0.80	0.80	—	4.4	0.003	0.72	0.0	0.04	20.36	0.00	2.150	15.20	0.00	16.3	83.6	0.1	-2.23	0.59	0.79	0.78	—	9911	783	4	154	121	0	0	logfile
✔	7L0Q	23100	2023-08-10	2020-12-12	4.3	4.28	4.01	4.2	0.007	1.07	1.0	0.06	14.95	0.01	2.196	7.90	0.70	6.2	93.5	0.3	-3.51	0.62	0.68	—	4.2	0.004	0.76	0.0	0.05	13.85	0.00	2.140	19.42	0.12	5.5	94.4	0.1	-0.41	1.18	0.64	0.74	—	7891	1002	5	0	0	0	0	logfile
✔	6UZ3	20951	2023-08-11	2019-11-14	3.5	3.88	—	3.8	0.022	1.33	3.0	0.15	17.37	0.01	1.260	32.37	1.05	11.2	88.5	0.4	-3.89	0.42	0.70	1.32	3.8	0.003	0.83	0.0	0.04	17.06	0.00	2.155	17.35	0.84	6.8	93.1	0.2	-0.13	1.28	0.41	0.69	0.56	9446	1126	5	0	25	0	0	logfile
✔	7L0S	23102	2023-08-10	2020-12-12	4.5	4.35	4.13	4.2	0.008	1.34	2.0	0.08	13.52	0.01	2.107	9.65	1.39	6.0	94.0	0.0	-3.19	0.61	0.63	—	4.2	0.003	0.78	0.0	0.05	13.35	0.00	2.144	16.64	0.00	3.9	96.1	0.0	-0.04	3.57	0.64	0.73	—	7906	1001	5	0	0	0	0	logfile
✔	7WNX	32634	2023-08-12	2022-01-20	3.36	3.85	—	3.7	0.033	0.94	0.0	0.18	14.56	0.00	2.209	8.77	0.50	8.2	91.5	0.3	-2.32	0.64	0.83	1.69	3.7	0.005	0.78	0.0	0.09	15.44	0.01	1.770	18.94	0.00	8.2	91.8	0.0	-1.85	0.34	0.66	0.85	1.55	5643	734	1	0	1	0	0	logfile
✔	7TET	25852	2023-08-19	2022-01-05	4.45	6.94	4.54	4.4	0.005	1.03	0.0	0.06	14.45	0.01	2.224	9.44	0.78	10.6	88.9	0.5	-4.42	0.84	0.83	—	4.3	0.010	0.84	0.0	0.04	13.46	0.01	2.145	23.13	0.00	10.8	89.0	0.2	-1.88	0.63	0.83	0.85	—	28088	3563	8	0	0	0	0	logfile
✔	7TPJ	26057	2023-08-09	2022-01-25	3.46	3.68	—	3.7	0.004	0.70	0.0	0.04	14.42	0.01	2.159	9.09	0.00	5.0	95.0	0.0	-0.01	0.57	0.69	1.76	3.7	0.003	0.63	0.0	0.04	16.27	0.00	2.236	8.15	0.40	5.5	94.5	0.0	0.67	1.42	0.60	0.72	1.60	4758	626	3	0	0	0	0	logfile

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