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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7oZP | 13131 | 2023-08-10 | 2021-06-28 | 3.8 | 4.17 | 3.83 | 4.0 | 0.002 | 0.39 | 0.0 | 0.04 | 14.04 | 0.00 | 1.969 | 4.71 | 0.00 | 2.1 | 97.9 | 0.0 | 1.24 | 0.79 | 0.71 | 0.86 | 4.0 | 0.004 | 0.71 | 0.0 | 0.05 | 16.72 | 0.00 | 2.095 | 15.96 | 0.33 | 3.8 | 96.2 | 0.0 | 0.23 | 0.98 | 0.83 | 0.79 | 1.29 | 54330 | 6774 | 32 | 0 | 10 | 0 | 0 | logfile |
✔ | 6NF8 | 9362 | 2023-08-13 | 2018-12-19 | 3.48 | 3.99 | — | 3.6 | 0.001 | 0.39 | 0.0 | 0.03 | 12.76 | 0.00 | 1.916 | 3.08 | 0.58 | 10.4 | 88.3 | 1.3 | -2.53 | 0.76 | 0.60 | 1.16 | 3.5 | 0.003 | 0.64 | 0.0 | 0.04 | 15.73 | 0.00 | 2.030 | 12.29 | 0.35 | 5.3 | 94.7 | 0.0 | -0.24 | 2.59 | 0.84 | 0.79 | 1.22 | 65776 | 5509 | 32 | 952 | 147 | 0 | 0 | logfile |
✔ | 6KRD | 0756 | 2023-08-11 | 2019-08-21 | 4.38 | 4.25 | — | 4.4 | 0.001 | 0.39 | 0.0 | 0.04 | 7.15 | 0.00 | 2.226 | 5.80 | 0.00 | 4.5 | 95.5 | 0.1 | -3.58 | 0.57 | 0.52 | — | 4.3 | 0.003 | 0.67 | 0.0 | 0.04 | 11.93 | 0.00 | 2.014 | 12.31 | 0.01 | 3.2 | 96.7 | 0.1 | 0.08 | 1.78 | 0.62 | 0.58 | — | 61005 | 8006 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MVY | 24058 | 2023-08-19 | 2021-05-15 | 2.39 | 3.24 | 1.97 | 3.1 | 0.002 | 0.39 | 0.0 | 0.03 | 6.61 | 0.00 | 2.209 | 3.28 | 0.00 | 0.7 | 99.3 | 0.0 | -0.54 | 0.72 | 0.64 | 0.92 | 3.0 | 0.004 | 0.62 | 0.0 | 0.04 | 14.21 | 0.00 | 1.966 | 12.50 | 1.86 | 4.0 | 96.0 | 0.0 | 1.26 | 1.65 | 0.76 | 0.75 | 2.15 | 26555 | 1694 | 2 | 0 | 0 | 0 | 13337 | logfile |
✔ | 6KRE | 0757 | 2023-08-11 | 2019-08-21 | 4.45 | 4.34 | — | 4.4 | 0.001 | 0.39 | 0.0 | 0.04 | 7.11 | 0.00 | 2.244 | 6.04 | 0.03 | 4.1 | 95.8 | 0.1 | -3.50 | 0.61 | 0.56 | — | 4.4 | 0.003 | 0.68 | 0.0 | 0.04 | 11.97 | 0.00 | 2.090 | 13.71 | 0.03 | 3.5 | 96.4 | 0.1 | 0.20 | 1.80 | 0.67 | 0.64 | — | 60321 | 7922 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XLH | 22244 | 2023-08-13 | 2020-06-28 | 2.83 | 2.93 | — | 2.9 | 0.001 | 0.39 | 0.0 | 0.04 | 7.54 | 0.00 | 2.093 | 5.99 | 0.13 | 1.5 | 98.5 | 0.0 | -3.84 | 0.73 | 0.80 | 3.26 | 2.9 | 0.004 | 0.62 | 0.0 | 0.04 | 16.39 | 0.00 | 1.913 | 9.37 | 1.67 | 3.1 | 96.9 | 0.0 | -0.57 | 0.88 | 0.77 | 0.88 | 3.86 | 13608 | 1675 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 8BFA | 16018 | 2023-08-09 | 2022-10-24 | 3.0 | 3.05 | 3.02 | 3.3 | 0.002 | 0.39 | 0.0 | 0.05 | 13.94 | 0.00 | 2.592 | 6.46 | 0.00 | 0.0 | 100.0 | 0.0 | -3.13 | 0.47 | 0.82 | 5.29 | 3.3 | 0.006 | 0.62 | 0.0 | 0.05 | 17.14 | 0.00 | 2.103 | 7.90 | 1.43 | 3.3 | 96.7 | 0.0 | -2.68 | 1.99 | 0.53 | 0.89 | 6.48 | 2860 | 380 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 8C8X | 16494 | 2023-08-20 | 2023-01-21 | 3.93 | 4.35 | 4.27 | 3.9 | 0.004 | 0.40 | 0.0 | 0.03 | 13.40 | 0.00 | 1.690 | 6.44 | 0.30 | 4.8 | 95.1 | 0.1 | 0.41 | 0.80 | 0.74 | 0.78 | 3.9 | 0.006 | 0.69 | 0.0 | 0.04 | 16.15 | 0.00 | 1.730 | 23.23 | 0.69 | 9.3 | 90.7 | 0.0 | -1.84 | 1.47 | 0.82 | 0.80 | 1.12 | 82776 | 2832 | 28 | 2824 | 0 | 0 | 0 | logfile |
✔ | 7XMR | 33302 | 2023-08-10 | 2022-04-26 | 3.1 | 3.31 | 2.93 | 3.3 | 0.001 | 0.40 | 0.0 | 0.04 | 10.86 | 0.00 | 2.250 | 5.63 | 0.00 | 1.6 | 98.4 | 0.0 | -3.39 | 0.52 | 0.64 | 1.08 | 3.3 | 0.003 | 0.65 | 0.0 | 0.04 | 14.81 | 0.00 | 2.142 | 12.96 | 0.29 | 4.1 | 95.9 | 0.0 | 0.09 | 0.66 | 0.59 | 0.74 | 1.37 | 6611 | 871 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PGS | 13394 | 2023-08-14 | 2021-08-15 | 3.4 | 3.61 | 3.34 | 3.4 | 0.002 | 0.40 | 0.0 | 0.03 | 10.77 | 0.00 | 1.972 | 3.57 | 0.66 | 1.2 | 98.8 | 0.0 | -0.33 | 0.80 | 0.79 | 2.03 | 3.4 | 0.003 | 0.54 | 0.0 | 0.03 | 13.21 | 0.00 | 1.871 | 6.13 | 0.08 | 3.3 | 96.7 | 0.0 | 1.64 | 0.74 | 0.82 | 0.81 | 1.41 | 67202 | 4210 | 2 | 0 | 1 | 0 | 33807 | logfile |
✔ | 6PCS | 20306 | 2023-08-17 | 2019-06-18 | 2.8 | 3.17 | — | 3.0 | 0.005 | 0.40 | 0.0 | 0.02 | 12.69 | 0.03 | 1.658 | 3.31 | 1.31 | 5.7 | 94.1 | 0.1 | -3.87 | 0.66 | 0.86 | 3.98 | 3.0 | 0.006 | 0.72 | 0.0 | 0.04 | 15.09 | 0.01 | 1.964 | 8.80 | 4.06 | 7.2 | 92.5 | 0.3 | -1.60 | 1.27 | 0.67 | 0.89 | 3.52 | 72169 | 967 | 8 | 3015 | 1 | 0 | 0 | logfile |
✔ | 8C8Y | 16495 | 2023-08-19 | 2023-01-21 | 3.03 | 3.24 | 3.11 | 3.1 | 0.002 | 0.40 | 0.0 | 0.03 | 13.66 | 0.00 | 1.796 | 4.85 | 0.00 | 6.2 | 93.7 | 0.1 | 0.29 | 0.77 | 0.81 | 2.49 | 3.1 | 0.006 | 0.66 | 0.0 | 0.04 | 15.10 | 0.01 | 1.989 | 10.17 | 0.67 | 8.3 | 91.6 | 0.1 | -1.27 | 0.45 | 0.80 | 0.87 | 2.59 | 77316 | 2566 | 25 | 2667 | 0 | 0 | 0 | logfile |
✔ | 6PCH | 20300 | 2023-08-17 | 2019-06-17 | 2.9 | 3.23 | — | 3.1 | 0.005 | 0.40 | 0.0 | 0.02 | 12.74 | 0.03 | 1.702 | 3.90 | 2.23 | 7.9 | 92.0 | 0.1 | -4.23 | 0.61 | 0.79 | 3.30 | 3.1 | 0.005 | 0.75 | 0.0 | 0.04 | 15.49 | 0.01 | 1.995 | 11.55 | 5.52 | 8.1 | 91.7 | 0.2 | -2.21 | 0.50 | 0.63 | 0.83 | 1.98 | 72134 | 964 | 8 | 3015 | 1 | 0 | 0 | logfile |
✔ | 7oDS | 12846 | 2023-08-10 | 2021-04-30 | 3.1 | 3.32 | — | 3.1 | 0.002 | 0.40 | 0.0 | 0.03 | 11.26 | 0.02 | 2.009 | 5.03 | 0.51 | 1.2 | 98.8 | 0.0 | 0.91 | 0.78 | 0.76 | 2.42 | 3.1 | 0.007 | 0.85 | 0.0 | 0.05 | 15.09 | 0.01 | 1.757 | 13.49 | 0.41 | 4.0 | 96.0 | 0.0 | -0.12 | 1.70 | 0.80 | 0.80 | 2.27 | 108339 | 9371 | 67 | 1487 | 132 | 0 | 0 | logfile |
✔ | 6J2X | 9772 | 2023-08-09 | 2019-01-03 | 3.8 | 3.99 | — | 3.9 | 0.002 | 0.40 | 0.0 | 0.04 | 7.12 | 0.00 | 2.220 | 6.65 | 0.00 | 5.8 | 94.1 | 0.1 | -3.52 | 0.80 | 0.70 | 0.49 | 3.9 | 0.004 | 0.78 | 1.0 | 0.04 | 15.31 | 0.00 | 2.050 | 18.52 | 0.40 | 4.7 | 95.2 | 0.1 | -0.69 | 1.88 | 0.84 | 0.78 | 0.88 | 106176 | 13501 | 47 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RZR | 24775 | 2023-08-09 | 2021-08-27 | 2.27 | 2.24 | — | 2.0 | 0.007 | 0.40 | 0.0 | 0.04 | 14.34 | 0.00 | 2.436 | 3.23 | 0.00 | 1.9 | 98.1 | 0.0 | 2.50 | 0.79 | 0.80 | 3.37 | 2.0 | 0.002 | 0.36 | 0.0 | 0.03 | 15.29 | 0.00 | 2.294 | 4.44 | 0.71 | 0.0 | 100.0 | 0.0 | 6.53 | 0.31 | 0.81 | 0.83 | 3.42 | 2448 | 324 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oDE | 12826 | 2023-08-22 | 2021-04-29 | 2.84 | 2.98 | 2.78 | 2.9 | 0.003 | 0.40 | 0.0 | 0.03 | 13.13 | 0.01 | 1.949 | 3.00 | 3.32 | 2.0 | 98.0 | 0.0 | -0.12 | 0.82 | 0.80 | 3.61 | 2.9 | 0.008 | 0.68 | 0.0 | 0.04 | 14.58 | 0.01 | 1.852 | 6.52 | 2.15 | 4.7 | 95.3 | 0.0 | -0.33 | 0.53 | 0.85 | 0.84 | 3.32 | 92524 | 1761 | 16 | 1990 | 0 | 0 | 35996 | logfile |
✔ | 7RZQ | 24774 | 2023-08-09 | 2021-08-27 | 2.09 | 2.26 | — | 2.7 | 0.006 | 0.40 | 0.0 | 0.03 | 14.23 | 0.00 | 2.339 | 4.69 | 0.00 | 1.9 | 98.1 | 0.0 | 2.15 | 0.78 | 0.79 | 1.56 | 2.0 | 0.003 | 0.31 | 0.0 | 0.03 | 15.07 | 0.00 | 2.343 | 5.71 | 0.00 | 0.0 | 100.0 | 0.0 | 5.84 | 0.30 | 0.82 | 0.82 | 2.01 | 2421 | 322 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HD5 | 0201 | 2023-08-11 | 2018-08-17 | 4.8 | 6.01 | — | 5.9 | 0.001 | 0.40 | 0.0 | 0.03 | 8.70 | 0.00 | 2.289 | 4.36 | 0.10 | 10.5 | 88.4 | 1.1 | -1.81 | 0.36 | 0.32 | — | 5.9 | 0.004 | 0.81 | 0.0 | 0.04 | 11.92 | 0.01 | 2.072 | 21.86 | 0.00 | 6.4 | 93.5 | 0.1 | -0.40 | 2.04 | 0.46 | 0.56 | — | 9707 | 1234 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oo8 | 13007 | 2023-08-13 | 2021-05-26 | 3.7 | 2.99 | 3.39 | 3.0 | 0.003 | 0.40 | 0.0 | 0.04 | 9.89 | 0.00 | 2.286 | 6.45 | 0.00 | 1.9 | 98.1 | 0.0 | 2.79 | 0.65 | 0.79 | 2.44 | 3.0 | 0.002 | 0.48 | 0.0 | 0.04 | 14.80 | 0.00 | 2.290 | 9.85 | 0.20 | 1.2 | 98.8 | 0.0 | 2.54 | 0.44 | 0.65 | 0.79 | 2.22 | 13923 | 1827 | 7 | 0 | 0 | 0 | 0 | logfile |