Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ULW	26595	2023-02-22	2022-04-05	3.1	3.61	3.28	3.5	0.002	0.41	0.0	0.04	13.47	0.00	2.235	2.87	0.00	1.3	98.7	0.0	2.53	0.53	0.83	2.45	3.4	0.003	0.58	0.0	0.04	16.61	0.00	2.103	7.93	0.30	2.4	97.6	0.0	1.71	0.77	0.54	0.85	2.68	18766	2400	6	0	0	0	0	logfile
✔	7WKD	32565	2023-02-22	2022-01-09	3.01	2.29	—	3.1	0.007	0.41	1.0	0.04	7.82	0.00	1.978	6.84	0.31	1.4	98.6	0.0	-1.70	0.68	0.66	1.77	3.0	0.017	0.79	0.0	0.04	14.70	0.01	1.891	15.45	0.42	3.8	96.2	0.0	0.29	1.05	0.72	0.75	2.56	17515	1120	6	0	0	0	8712	logfile
✔	7EU8	31309	2023-02-22	2021-05-16	4.07	4.11	—	3.6	0.002	0.41	0.0	0.10	8.07	0.00	2.206	3.13	3.51	2.0	97.9	0.1	1.10	0.75	0.61	—	3.4	0.002	0.63	0.0	0.06	8.82	0.00	2.132	7.20	0.00	4.1	95.7	0.2	-0.13	1.40	0.79	0.69	—	18670	3010	8	0	8	0	0	logfile
✔	7TD2	25821	2023-02-20	2021-12-30	3.11	3.30	—	3.2	0.002	0.41	0.0	0.04	11.84	0.00	2.175	2.14	0.42	1.1	98.9	0.0	-0.58	0.53	0.76	2.85	3.2	0.004	0.51	0.0	0.04	14.67	0.00	1.952	5.24	0.14	3.5	96.5	0.0	1.43	1.23	0.54	0.79	3.17	13528	904	5	0	1	0	6632	logfile
✔	6U5S	20654	2023-02-28	2019-08-28	3.07	3.44	—	3.4	0.003	0.41	0.0	0.07	12.04	0.00	2.078	6.02	0.00	3.3	96.7	0.0	-3.21	0.81	0.80	4.41	3.3	0.003	0.46	0.0	0.04	13.52	0.00	2.145	6.98	0.00	2.9	97.1	0.0	0.08	1.22	0.83	0.83	4.31	21461	1504	12	0	20	0	9755	logfile
✔	7PE8	13348	2023-02-27	2021-08-09	3.2	3.51	—	3.4	0.002	0.41	0.0	0.04	8.71	0.00	2.255	4.47	1.65	3.2	96.8	0.0	-0.20	0.79	0.81	2.75	3.4	0.002	0.52	0.0	0.04	12.64	0.00	2.179	7.09	0.40	4.0	96.0	0.0	0.66	0.49	0.80	0.83	1.94	29291	3832	8	0	3	0	0	logfile
✔	7FiJ	31599	2023-02-17	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	1.6	0.003	0.71	0.0	0.04	10.87	0.00	2.234	8.95	1.25	10.6	89.4	0.0	-0.78	0.63	0.60	0.54	2.95	3061	561	1	0	0	0	0	logfile
✔	6W18	21503	2023-02-20	2020-03-03	4.2	4.20	4.18	4.2	0.002	0.41	0.0	0.04	11.01	0.00	2.196	4.75	0.00	3.0	97.0	0.0	-3.43	0.71	0.62	—	4.2	0.003	0.71	0.0	0.04	12.93	0.00	2.101	9.33	0.18	7.3	92.7	0.0	-1.63	1.34	0.77	0.71	—	13151	1837	9	0	3	0	0	logfile
✔	6WCB	21605	2023-02-20	2020-03-30	3.17	3.17	—	3.2	0.005	0.41	0.0	0.03	13.87	0.00	2.128	2.50	1.29	0.8	99.2	0.0	0.58	0.55	0.77	2.89	3.2	0.003	0.50	0.0	0.04	15.55	0.00	2.072	3.71	0.16	1.7	98.3	0.0	3.40	1.29	0.54	0.79	2.46	11647	734	6	0	7	40	5904	logfile
✔	7Xo3	33335	2023-02-16	2022-04-30	2.6	2.32	1.68	2.7	0.002	0.41	0.0	0.05	12.37	0.00	2.223	4.70	0.00	8.2	91.8	0.0	-3.31	0.45	0.81	5.78	2.7	0.003	0.56	0.0	0.05	16.32	0.00	2.293	2.44	3.03	9.8	90.2	0.0	-1.76	2.17	0.48	0.85	5.80	2598	378	6	0	0	0	0	logfile
✔	7VXB	32174	2023-02-27	2021-11-12	3.9	4.21	—	4.1	0.002	0.41	0.0	0.04	7.20	0.00	2.045	12.30	0.00	4.1	95.8	0.0	-1.93	0.60	0.62	0.94	4.1	0.007	0.88	0.0	0.05	14.42	0.01	1.887	22.10	0.75	4.9	95.0	0.1	-0.50	1.20	0.67	0.76	0.98	29888	3795	4	0	0	0	0	logfile
✔	7UVT	26816	2023-02-20	2022-05-02	3.9	4.17	4.00	4.1	0.001	0.41	0.0	0.02	16.13	0.00	1.897	6.61	0.00	0.0	0.0	0.0	—	0.76	0.74	—	4.1	0.006	0.70	0.0	0.04	17.94	0.01	1.892	21.35	0.00	0.0	0.0	0.0	—	0.48	0.77	0.76	—	12409	0	1	386	0	0	4149	logfile
✔	7QN8	14070	2023-02-22	2021-12-20	3.1	3.39	—	3.2	0.002	0.42	0.0	0.04	8.28	0.00	2.247	3.93	0.34	0.5	99.5	0.0	2.21	0.79	0.86	3.96	3.1	0.002	0.60	0.0	0.04	13.00	0.00	2.181	8.10	0.34	1.2	98.8	0.0	1.88	0.80	0.80	0.90	3.94	16755	1992	19	0	32	0	0	logfile
✔	7T4N	25681	2023-02-17	2021-12-10	2.35	2.66	2.38	2.5	0.002	0.42	0.0	0.04	16.22	0.00	2.207	4.39	1.25	1.0	99.0	0.0	0.87	0.63	0.85	3.82	2.5	0.003	0.49	0.0	0.04	16.48	0.00	2.284	5.93	1.53	1.0	99.0	0.0	1.61	0.24	0.66	0.87	3.71	6476	803	2	0	0	0	0	logfile
✔	7JLX	22383	2023-02-17	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.003	0.75	0.0	0.04	7.17	0.00	2.306	8.03	0.00	17.7	82.3	0.0	-2.25	2.42	0.48	0.53	—	3288	664	4	0	0	0	0	logfile
✔	7U1E	26299	2023-02-22	2022-02-21	4.52	4.53	—	4.5	0.001	0.42	0.0	0.04	11.18	0.00	2.240	5.30	2.68	3.6	96.4	0.0	-1.42	0.60	0.73	—	4.4	0.004	0.71	0.0	0.05	11.83	0.00	2.127	14.33	0.07	5.5	94.5	0.0	0.08	0.59	0.61	0.76	—	18366	2741	9	0	6	0	0	logfile
✔	7WoA	32646	2023-02-28	2022-01-21	3.25	2.98	—	3.2	0.002	0.42	0.0	0.04	8.91	0.00	2.229	6.55	4.23	3.8	96.2	0.0	-3.46	0.86	0.78	2.52	3.2	0.004	0.66	0.0	0.05	13.68	0.00	2.139	10.17	0.40	7.5	92.5	0.0	-1.83	0.85	0.89	0.85	2.85	31952	4060	10	0	39	0	0	logfile
✔	7EoR	31228	2023-02-24	2021-04-22	4.0	4.40	—	4.1	0.002	0.42	0.0	0.04	9.09	0.00	2.227	7.42	1.64	3.2	96.8	0.0	0.66	0.86	0.76	—	4.1	0.004	0.76	0.0	0.05	13.42	0.00	2.112	16.82	0.19	6.3	93.7	0.0	-0.91	2.23	0.88	0.82	—	24204	3030	8	0	16	0	0	logfile
✔	7EBF	31053	2023-02-20	2021-03-09	2.63	2.31	—	2.5	0.002	0.42	0.0	0.04	11.01	0.00	2.294	5.76	2.11	2.0	98.0	0.0	1.61	0.65	0.78	2.64	2.3	0.003	0.52	0.0	0.04	15.90	0.00	2.270	8.68	2.56	2.9	97.1	0.0	1.11	0.55	0.67	0.81	2.90	13052	1640	4	0	0	0	0	logfile
✔	7QNA	14072	2023-02-21	2021-12-20	3.0	3.58	—	3.3	0.002	0.42	0.0	0.04	9.01	0.00	2.271	4.69	0.76	1.2	98.8	0.0	1.88	0.76	0.86	3.66	3.3	0.003	0.67	0.0	0.04	13.54	0.00	2.185	9.10	1.45	2.1	97.9	0.0	1.22	2.13	0.77	0.89	4.09	14777	1763	16	0	29	0	0	logfile

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