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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7oDT | 12847 | 2022-04-04 | 2021-04-30 | 3.1 | 3.31 | — | 3.1 | 0.002 | 0.41 | 0.0 | 0.03 | 10.97 | 0.01 | 1.988 | 5.25 | 0.53 | 1.2 | 98.8 | 0.0 | 1.05 | 0.77 | 0.79 | 2.84 | 3.1 | 0.006 | 0.70 | 1.0 | 0.04 | 14.59 | 0.01 | 1.817 | 11.77 | 0.02 | 2.9 | 97.1 | 0.0 | 0.58 | 0.68 | 0.78 | 0.82 | 2.56 | 110473 | 9585 | 71 | 1526 | 110 | 0 | 0 | logfile |
✔ | 7VXB | 32174 | 2022-04-07 | 2021-11-12 | 3.9 | 4.21 | — | 4.1 | 0.002 | 0.41 | 0.0 | 0.04 | 7.20 | 0.00 | 2.045 | 12.24 | 0.00 | 4.1 | 95.8 | 0.0 | -1.93 | 0.60 | 0.62 | 0.94 | 4.1 | 0.009 | 0.97 | 1.0 | 0.04 | 14.21 | 0.01 | 2.006 | 15.01 | 0.18 | 3.7 | 96.2 | 0.1 | -0.16 | 1.15 | 0.66 | 0.75 | 1.06 | 29888 | 3795 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6X34 | 22017 | 2022-04-09 | 2020-05-21 | 4.7 | 6.14 | 4.99 | 4.8 | 0.001 | 0.41 | 0.0 | 0.03 | 9.38 | 0.00 | 2.258 | 3.75 | 0.61 | 1.6 | 98.4 | 0.0 | -2.99 | 0.74 | 0.66 | — | 4.8 | 0.003 | 0.65 | 0.0 | 0.04 | 9.64 | 0.00 | 2.095 | 12.58 | 0.00 | 4.0 | 96.0 | 0.0 | 0.40 | 0.92 | 0.80 | 0.80 | — | 97888 | 13956 | 12 | 0 | 1320 | 0 | 0 | logfile |
✔ | 7PE8 | 13348 | 2022-04-07 | 2021-08-09 | 3.2 | 3.51 | — | 3.4 | 0.002 | 0.41 | 0.0 | 0.04 | 8.71 | 0.00 | 2.255 | 4.45 | 1.65 | 3.2 | 96.8 | 0.0 | -0.20 | 0.79 | 0.81 | 2.75 | 3.4 | 0.002 | 0.52 | 0.0 | 0.04 | 12.70 | 0.00 | 2.206 | 7.04 | 0.17 | 3.6 | 96.4 | 0.0 | 0.72 | 0.49 | 0.80 | 0.83 | 1.84 | 29291 | 3832 | 8 | 0 | 3 | 0 | 0 | logfile |
✔ | 6U5S | 20654 | 2022-04-08 | 2019-08-28 | 3.07 | 3.44 | — | 3.4 | 0.003 | 0.41 | 0.0 | 0.07 | 12.04 | 0.00 | 2.078 | 6.02 | 0.00 | 3.3 | 96.7 | 0.0 | -3.21 | 0.81 | 0.80 | 4.41 | 3.3 | 0.005 | 0.49 | 0.0 | 0.04 | 13.55 | 0.00 | 2.091 | 7.11 | 0.00 | 4.2 | 95.8 | 0.0 | -0.08 | 1.23 | 0.83 | 0.83 | 4.36 | 21461 | 1504 | 8 | 0 | 20 | 0 | 9755 | logfile |
✔ | 6WCB | 21605 | 2022-04-05 | 2020-03-30 | 3.17 | 3.17 | — | 3.2 | 0.005 | 0.41 | 0.0 | 0.03 | 13.87 | 0.00 | 2.128 | 2.50 | 1.29 | 0.8 | 99.2 | 0.0 | 0.58 | 0.55 | 0.77 | 2.89 | 3.2 | 0.003 | 0.49 | 0.0 | 0.04 | 15.56 | 0.00 | 2.085 | 4.05 | 0.16 | 1.7 | 98.3 | 0.0 | 3.29 | 1.29 | 0.55 | 0.79 | 2.44 | 11647 | 734 | 6 | 0 | 7 | 40 | 5904 | logfile |
✔ | 6W18 | 21503 | 2022-04-05 | 2020-03-03 | 4.2 | 4.20 | 4.18 | 4.2 | 0.002 | 0.41 | 0.0 | 0.04 | 11.01 | 0.00 | 2.196 | 4.79 | 0.00 | 3.0 | 97.0 | 0.0 | -3.43 | 0.71 | 0.62 | — | 4.1 | 0.007 | 0.90 | 0.0 | 0.05 | 13.19 | 0.01 | 2.028 | 17.50 | 0.09 | 12.6 | 87.4 | 0.0 | -2.30 | 1.61 | 0.78 | 0.73 | — | 13151 | 1837 | 9 | 0 | 3 | 0 | 0 | logfile |
✔ | 7VXA | 32173 | 2022-04-09 | 2021-11-12 | 3.9 | 4.16 | — | 4.1 | 0.002 | 0.41 | 0.0 | 0.04 | 7.17 | 0.00 | 2.017 | 12.91 | 0.00 | 4.3 | 95.7 | 0.0 | -1.90 | 0.60 | 0.60 | 0.95 | 4.0 | 0.005 | 0.74 | 0.0 | 0.04 | 13.79 | 0.00 | 1.906 | 33.99 | 0.15 | 4.8 | 95.2 | 0.1 | -0.61 | 1.69 | 0.65 | 0.72 | 1.08 | 46176 | 3795 | 4 | 0 | 0 | 0 | 16288 | logfile |
✔ | 6ZGG | 11205 | 2022-04-07 | 2020-06-18 | 3.8 | 4.33 | 4.00 | 4.0 | 0.001 | 0.41 | 0.0 | 0.04 | 5.80 | 0.00 | 2.231 | 3.79 | 1.00 | 12.4 | 87.1 | 0.5 | -2.52 | 0.84 | 0.74 | 0.73 | 4.0 | 0.004 | 0.68 | 0.0 | 0.04 | 11.53 | 0.00 | 2.149 | 9.56 | 0.11 | 4.9 | 95.1 | 0.0 | -0.82 | 1.78 | 0.87 | 0.82 | 1.18 | 25096 | 3207 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TD2 | 25821 | 2022-04-05 | 2021-12-30 | 3.11 | 3.30 | — | 3.2 | 0.002 | 0.41 | 0.0 | 0.04 | 11.78 | 0.00 | 2.175 | 2.14 | 0.42 | 1.1 | 98.9 | 0.0 | -0.58 | 0.53 | 0.76 | 2.85 | 3.2 | 0.004 | 0.52 | 0.0 | 0.04 | 14.66 | 0.00 | 1.962 | 5.97 | 0.42 | 3.8 | 96.2 | 0.0 | 1.27 | 1.23 | 0.54 | 0.79 | 3.10 | 13528 | 904 | 5 | 0 | 1 | 0 | 6632 | logfile |
✔ | 7PXA | 13695 | 2022-04-09 | 2021-10-08 | 2.8 | 2.56 | — | 2.8 | 0.002 | 0.42 | 0.0 | 0.04 | 9.39 | 0.00 | 2.147 | 3.67 | 1.14 | 1.5 | 98.5 | 0.0 | 2.60 | 0.76 | 0.84 | 2.86 | 2.8 | 0.008 | 0.77 | 0.0 | 0.05 | 15.39 | 0.01 | 2.064 | 5.76 | 3.14 | 2.9 | 97.1 | 0.0 | 1.69 | 1.45 | 0.78 | 0.87 | 3.03 | 46614 | 6187 | 35 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JLX | 22383 | 2022-04-04 | 2020-07-30 | 4.6 | 3.86 | — | 3.7 | 0.001 | 0.42 | 0.0 | 0.04 | 3.80 | 0.00 | 2.240 | 2.96 | 0.00 | 6.7 | 93.3 | 0.0 | 1.23 | 0.54 | 0.51 | — | 3.8 | 0.004 | 0.84 | 0.0 | 0.04 | 7.94 | 0.00 | 2.314 | 8.45 | 0.00 | 18.9 | 81.1 | 0.0 | -3.03 | 2.40 | 0.47 | 0.53 | — | 3288 | 664 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QXF | 4668 | 2022-04-08 | 2019-03-07 | 3.6 | 4.31 | — | 3.6 | 0.002 | 0.42 | 0.0 | 0.04 | 11.08 | 0.00 | 2.203 | 7.01 | 0.73 | 2.2 | 97.7 | 0.1 | -1.19 | 0.90 | 0.86 | 1.38 | 3.6 | 0.004 | 0.65 | 0.0 | 0.04 | 14.19 | 0.00 | 2.088 | 11.82 | 0.05 | 2.5 | 97.4 | 0.1 | 1.77 | 2.78 | 0.89 | 0.86 | 1.48 | 34693 | 4088 | 30 | 50 | 8 | 0 | 0 | logfile |
✔ | 7S1J | 24803 | 2022-04-26 | 2021-09-02 | 2.47 | 3.10 | — | 2.9 | 0.004 | 0.42 | 0.0 | 0.03 | 14.43 | 0.01 | 1.008 | 5.80 | 1.77 | 2.6 | 97.3 | 0.1 | 1.01 | 0.74 | 0.86 | 2.53 | 2.9 | 0.004 | 0.56 | 0.0 | 0.03 | 15.24 | 0.01 | 1.769 | 6.91 | 2.92 | 3.7 | 96.2 | 0.1 | 0.37 | 0.44 | 0.74 | 0.87 | 2.77 | 237820 | 5656 | 63 | 4556 | 202 | 35 | 95440 | logfile |
✔ | 6PM5 | 20388 | 2022-04-05 | 2019-07-01 | 3.1 | 3.38 | — | 3.4 | 0.001 | 0.42 | 0.0 | 0.06 | 6.80 | 0.00 | 2.275 | 4.99 | 0.00 | 2.4 | 97.6 | 0.0 | -4.42 | 0.52 | 0.78 | 3.48 | 3.4 | 0.003 | 0.65 | 0.0 | 0.04 | 14.29 | 0.00 | 2.238 | 7.58 | 0.41 | 3.2 | 96.8 | 0.0 | -0.31 | 1.12 | 0.58 | 0.85 | 3.86 | 13975 | 1735 | 15 | 0 | 15 | 0 | 0 | logfile |
✔ | 7A4H | 11633 | 2022-04-17 | 2020-08-19 | 4.5 | 4.54 | 4.44 | 4.5 | 0.002 | 0.42 | 0.0 | 0.04 | 10.28 | 0.00 | 2.251 | 6.05 | 2.76 | 1.8 | 98.2 | 0.0 | 3.99 | 0.69 | 0.73 | — | 4.5 | 0.003 | 0.71 | 0.0 | 0.05 | 13.56 | 0.00 | 2.031 | 13.92 | 0.02 | 2.2 | 97.8 | 0.0 | 1.75 | 1.26 | 0.72 | 0.79 | — | 204396 | 26904 | 180 | 0 | 0 | 0 | 0 | logfile |
✔ | 7B0Y | 11972 | 2022-04-09 | 2020-11-23 | 3.6 | 3.87 | 3.41 | 3.7 | 0.002 | 0.42 | 0.0 | 0.04 | 15.19 | 0.00 | 1.954 | 4.30 | 0.02 | 2.1 | 97.9 | 0.0 | -2.96 | 0.75 | 0.78 | 2.05 | 3.7 | 0.006 | 0.76 | 1.0 | 0.04 | 17.28 | 0.00 | 2.099 | 12.24 | 0.14 | 3.2 | 96.8 | 0.0 | -0.18 | 1.23 | 0.75 | 0.78 | 1.75 | 43792 | 4745 | 31 | 274 | 9 | 0 | 0 | logfile |
✔ | 7T4N | 25681 | 2022-04-04 | 2021-12-10 | 2.35 | 2.66 | 2.38 | 2.5 | 0.002 | 0.42 | 0.0 | 0.04 | 16.22 | 0.00 | 2.207 | 4.39 | 1.25 | 1.0 | 99.0 | 0.0 | 0.87 | 0.63 | 0.85 | 3.82 | 2.6 | 0.002 | 0.46 | 0.0 | 0.04 | 16.43 | 0.00 | 2.291 | 6.16 | 1.94 | 1.5 | 98.5 | 0.0 | 1.69 | 0.25 | 0.66 | 0.87 | 3.63 | 6476 | 803 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BL6 | 12219 | 2022-04-08 | 2021-01-18 | 4.0 | 7.11 | — | 4.0 | 0.002 | 0.42 | 0.0 | 0.03 | 13.17 | 0.00 | 2.117 | 10.94 | 0.07 | 4.7 | 95.3 | 0.1 | -0.28 | 0.92 | 0.83 | — | 4.0 | 0.004 | 0.66 | 0.0 | 0.03 | 16.96 | 0.00 | 1.946 | 34.96 | 0.17 | 8.2 | 91.8 | 0.1 | -1.70 | 3.13 | 0.95 | 0.82 | — | 92769 | 3600 | 42 | 3016 | 5 | 27 | 0 | logfile |
✔ | 7oZN | 13129 | 2022-04-04 | 2021-06-28 | 3.5 | 3.79 | 3.49 | 3.7 | 0.002 | 0.42 | 0.0 | 0.04 | 14.10 | 0.00 | 2.073 | 4.61 | 0.00 | 2.0 | 98.0 | 0.0 | 1.13 | 0.77 | 0.72 | 1.17 | 3.7 | 0.011 | 1.01 | 4.0 | 0.05 | 16.83 | 0.01 | 2.040 | 16.29 | 0.55 | 3.4 | 96.6 | 0.0 | -0.11 | 0.83 | 0.80 | 0.78 | 1.46 | 54330 | 6774 | 32 | 0 | 10 | 0 | 0 | logfile |