Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oDT	12847	2022-04-04	2021-04-30	3.1	3.31	—	3.1	0.002	0.41	0.0	0.03	10.97	0.01	1.988	5.25	0.53	1.2	98.8	0.0	1.05	0.77	0.79	2.84	3.1	0.006	0.70	1.0	0.04	14.59	0.01	1.817	11.77	0.02	2.9	97.1	0.0	0.58	0.68	0.78	0.82	2.56	110473	9585	71	1526	110	0	0	logfile
✔	7VXB	32174	2022-04-07	2021-11-12	3.9	4.21	—	4.1	0.002	0.41	0.0	0.04	7.20	0.00	2.045	12.24	0.00	4.1	95.8	0.0	-1.93	0.60	0.62	0.94	4.1	0.009	0.97	1.0	0.04	14.21	0.01	2.006	15.01	0.18	3.7	96.2	0.1	-0.16	1.15	0.66	0.75	1.06	29888	3795	4	0	0	0	0	logfile
✔	6X34	22017	2022-04-09	2020-05-21	4.7	6.14	4.99	4.8	0.001	0.41	0.0	0.03	9.38	0.00	2.258	3.75	0.61	1.6	98.4	0.0	-2.99	0.74	0.66	—	4.8	0.003	0.65	0.0	0.04	9.64	0.00	2.095	12.58	0.00	4.0	96.0	0.0	0.40	0.92	0.80	0.80	—	97888	13956	12	0	1320	0	0	logfile
✔	7PE8	13348	2022-04-07	2021-08-09	3.2	3.51	—	3.4	0.002	0.41	0.0	0.04	8.71	0.00	2.255	4.45	1.65	3.2	96.8	0.0	-0.20	0.79	0.81	2.75	3.4	0.002	0.52	0.0	0.04	12.70	0.00	2.206	7.04	0.17	3.6	96.4	0.0	0.72	0.49	0.80	0.83	1.84	29291	3832	8	0	3	0	0	logfile
✔	6U5S	20654	2022-04-08	2019-08-28	3.07	3.44	—	3.4	0.003	0.41	0.0	0.07	12.04	0.00	2.078	6.02	0.00	3.3	96.7	0.0	-3.21	0.81	0.80	4.41	3.3	0.005	0.49	0.0	0.04	13.55	0.00	2.091	7.11	0.00	4.2	95.8	0.0	-0.08	1.23	0.83	0.83	4.36	21461	1504	8	0	20	0	9755	logfile
✔	6WCB	21605	2022-04-05	2020-03-30	3.17	3.17	—	3.2	0.005	0.41	0.0	0.03	13.87	0.00	2.128	2.50	1.29	0.8	99.2	0.0	0.58	0.55	0.77	2.89	3.2	0.003	0.49	0.0	0.04	15.56	0.00	2.085	4.05	0.16	1.7	98.3	0.0	3.29	1.29	0.55	0.79	2.44	11647	734	6	0	7	40	5904	logfile
✔	6W18	21503	2022-04-05	2020-03-03	4.2	4.20	4.18	4.2	0.002	0.41	0.0	0.04	11.01	0.00	2.196	4.79	0.00	3.0	97.0	0.0	-3.43	0.71	0.62	—	4.1	0.007	0.90	0.0	0.05	13.19	0.01	2.028	17.50	0.09	12.6	87.4	0.0	-2.30	1.61	0.78	0.73	—	13151	1837	9	0	3	0	0	logfile
✔	7VXA	32173	2022-04-09	2021-11-12	3.9	4.16	—	4.1	0.002	0.41	0.0	0.04	7.17	0.00	2.017	12.91	0.00	4.3	95.7	0.0	-1.90	0.60	0.60	0.95	4.0	0.005	0.74	0.0	0.04	13.79	0.00	1.906	33.99	0.15	4.8	95.2	0.1	-0.61	1.69	0.65	0.72	1.08	46176	3795	4	0	0	0	16288	logfile
✔	6ZGG	11205	2022-04-07	2020-06-18	3.8	4.33	4.00	4.0	0.001	0.41	0.0	0.04	5.80	0.00	2.231	3.79	1.00	12.4	87.1	0.5	-2.52	0.84	0.74	0.73	4.0	0.004	0.68	0.0	0.04	11.53	0.00	2.149	9.56	0.11	4.9	95.1	0.0	-0.82	1.78	0.87	0.82	1.18	25096	3207	3	0	0	0	0	logfile
✔	7TD2	25821	2022-04-05	2021-12-30	3.11	3.30	—	3.2	0.002	0.41	0.0	0.04	11.78	0.00	2.175	2.14	0.42	1.1	98.9	0.0	-0.58	0.53	0.76	2.85	3.2	0.004	0.52	0.0	0.04	14.66	0.00	1.962	5.97	0.42	3.8	96.2	0.0	1.27	1.23	0.54	0.79	3.10	13528	904	5	0	1	0	6632	logfile
✔	7PXA	13695	2022-04-09	2021-10-08	2.8	2.56	—	2.8	0.002	0.42	0.0	0.04	9.39	0.00	2.147	3.67	1.14	1.5	98.5	0.0	2.60	0.76	0.84	2.86	2.8	0.008	0.77	0.0	0.05	15.39	0.01	2.064	5.76	3.14	2.9	97.1	0.0	1.69	1.45	0.78	0.87	3.03	46614	6187	35	0	0	0	0	logfile
✔	7JLX	22383	2022-04-04	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.004	0.84	0.0	0.04	7.94	0.00	2.314	8.45	0.00	18.9	81.1	0.0	-3.03	2.40	0.47	0.53	—	3288	664	4	0	0	0	0	logfile
✔	6QXF	4668	2022-04-08	2019-03-07	3.6	4.31	—	3.6	0.002	0.42	0.0	0.04	11.08	0.00	2.203	7.01	0.73	2.2	97.7	0.1	-1.19	0.90	0.86	1.38	3.6	0.004	0.65	0.0	0.04	14.19	0.00	2.088	11.82	0.05	2.5	97.4	0.1	1.77	2.78	0.89	0.86	1.48	34693	4088	30	50	8	0	0	logfile
✔	7S1J	24803	2022-04-26	2021-09-02	2.47	3.10	—	2.9	0.004	0.42	0.0	0.03	14.43	0.01	1.008	5.80	1.77	2.6	97.3	0.1	1.01	0.74	0.86	2.53	2.9	0.004	0.56	0.0	0.03	15.24	0.01	1.769	6.91	2.92	3.7	96.2	0.1	0.37	0.44	0.74	0.87	2.77	237820	5656	63	4556	202	35	95440	logfile
✔	6PM5	20388	2022-04-05	2019-07-01	3.1	3.38	—	3.4	0.001	0.42	0.0	0.06	6.80	0.00	2.275	4.99	0.00	2.4	97.6	0.0	-4.42	0.52	0.78	3.48	3.4	0.003	0.65	0.0	0.04	14.29	0.00	2.238	7.58	0.41	3.2	96.8	0.0	-0.31	1.12	0.58	0.85	3.86	13975	1735	15	0	15	0	0	logfile
✔	7A4H	11633	2022-04-17	2020-08-19	4.5	4.54	4.44	4.5	0.002	0.42	0.0	0.04	10.28	0.00	2.251	6.05	2.76	1.8	98.2	0.0	3.99	0.69	0.73	—	4.5	0.003	0.71	0.0	0.05	13.56	0.00	2.031	13.92	0.02	2.2	97.8	0.0	1.75	1.26	0.72	0.79	—	204396	26904	180	0	0	0	0	logfile
✔	7B0Y	11972	2022-04-09	2020-11-23	3.6	3.87	3.41	3.7	0.002	0.42	0.0	0.04	15.19	0.00	1.954	4.30	0.02	2.1	97.9	0.0	-2.96	0.75	0.78	2.05	3.7	0.006	0.76	1.0	0.04	17.28	0.00	2.099	12.24	0.14	3.2	96.8	0.0	-0.18	1.23	0.75	0.78	1.75	43792	4745	31	274	9	0	0	logfile
✔	7T4N	25681	2022-04-04	2021-12-10	2.35	2.66	2.38	2.5	0.002	0.42	0.0	0.04	16.22	0.00	2.207	4.39	1.25	1.0	99.0	0.0	0.87	0.63	0.85	3.82	2.6	0.002	0.46	0.0	0.04	16.43	0.00	2.291	6.16	1.94	1.5	98.5	0.0	1.69	0.25	0.66	0.87	3.63	6476	803	2	0	0	0	0	logfile
✔	7BL6	12219	2022-04-08	2021-01-18	4.0	7.11	—	4.0	0.002	0.42	0.0	0.03	13.17	0.00	2.117	10.94	0.07	4.7	95.3	0.1	-0.28	0.92	0.83	—	4.0	0.004	0.66	0.0	0.03	16.96	0.00	1.946	34.96	0.17	8.2	91.8	0.1	-1.70	3.13	0.95	0.82	—	92769	3600	42	3016	5	27	0	logfile
✔	7oZN	13129	2022-04-04	2021-06-28	3.5	3.79	3.49	3.7	0.002	0.42	0.0	0.04	14.10	0.00	2.073	4.61	0.00	2.0	98.0	0.0	1.13	0.77	0.72	1.17	3.7	0.011	1.01	4.0	0.05	16.83	0.01	2.040	16.29	0.55	3.4	96.6	0.0	-0.11	0.83	0.80	0.78	1.46	54330	6774	32	0	10	0	0	logfile

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