Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oZP	13131	2023-08-10	2021-06-28	3.8	4.17	3.83	4.0	0.002	0.39	0.0	0.04	14.04	0.00	1.969	4.71	0.00	2.1	97.9	0.0	1.24	0.79	0.71	0.86	4.0	0.004	0.71	0.0	0.05	16.72	0.00	2.095	15.96	0.33	3.8	96.2	0.0	0.23	0.98	0.83	0.79	1.29	54330	6774	32	0	10	0	0	logfile
✔	6NF8	9362	2023-08-13	2018-12-19	3.48	3.99	—	3.6	0.001	0.39	0.0	0.03	12.76	0.00	1.916	3.08	0.58	10.4	88.3	1.3	-2.53	0.76	0.60	1.16	3.5	0.003	0.64	0.0	0.04	15.73	0.00	2.030	12.29	0.35	5.3	94.7	0.0	-0.24	2.59	0.84	0.79	1.22	65776	5509	32	952	147	0	0	logfile
✔	6KRD	0756	2023-08-11	2019-08-21	4.38	4.25	—	4.4	0.001	0.39	0.0	0.04	7.15	0.00	2.226	5.80	0.00	4.5	95.5	0.1	-3.58	0.57	0.52	—	4.3	0.003	0.67	0.0	0.04	11.93	0.00	2.014	12.31	0.01	3.2	96.7	0.1	0.08	1.78	0.62	0.58	—	61005	8006	16	0	0	0	0	logfile
✔	7MVY	24058	2023-08-19	2021-05-15	2.39	3.24	1.97	3.1	0.002	0.39	0.0	0.03	6.61	0.00	2.209	3.28	0.00	0.7	99.3	0.0	-0.54	0.72	0.64	0.92	3.0	0.004	0.62	0.0	0.04	14.21	0.00	1.966	12.50	1.86	4.0	96.0	0.0	1.26	1.65	0.76	0.75	2.15	26555	1694	2	0	0	0	13337	logfile
✔	6KRE	0757	2023-08-11	2019-08-21	4.45	4.34	—	4.4	0.001	0.39	0.0	0.04	7.11	0.00	2.244	6.04	0.03	4.1	95.8	0.1	-3.50	0.61	0.56	—	4.4	0.003	0.68	0.0	0.04	11.97	0.00	2.090	13.71	0.03	3.5	96.4	0.1	0.20	1.80	0.67	0.64	—	60321	7922	16	0	0	0	0	logfile
✔	6XLH	22244	2023-08-13	2020-06-28	2.83	2.93	—	2.9	0.001	0.39	0.0	0.04	7.54	0.00	2.093	5.99	0.13	1.5	98.5	0.0	-3.84	0.73	0.80	3.26	2.9	0.004	0.62	0.0	0.04	16.39	0.00	1.913	9.37	1.67	3.1	96.9	0.0	-0.57	0.88	0.77	0.88	3.86	13608	1675	6	0	6	0	0	logfile
✔	8BFA	16018	2023-08-09	2022-10-24	3.0	3.05	3.02	3.3	0.002	0.39	0.0	0.05	13.94	0.00	2.592	6.46	0.00	0.0	100.0	0.0	-3.13	0.47	0.82	5.29	3.3	0.006	0.62	0.0	0.05	17.14	0.00	2.103	7.90	1.43	3.3	96.7	0.0	-2.68	1.99	0.53	0.89	6.48	2860	380	10	0	0	0	0	logfile
✔	8C8X	16494	2023-08-20	2023-01-21	3.93	4.35	4.27	3.9	0.004	0.40	0.0	0.03	13.40	0.00	1.690	6.44	0.30	4.8	95.1	0.1	0.41	0.80	0.74	0.78	3.9	0.006	0.69	0.0	0.04	16.15	0.00	1.730	23.23	0.69	9.3	90.7	0.0	-1.84	1.47	0.82	0.80	1.12	82776	2832	28	2824	0	0	0	logfile
✔	7XMR	33302	2023-08-10	2022-04-26	3.1	3.31	2.93	3.3	0.001	0.40	0.0	0.04	10.86	0.00	2.250	5.63	0.00	1.6	98.4	0.0	-3.39	0.52	0.64	1.08	3.3	0.003	0.65	0.0	0.04	14.81	0.00	2.142	12.96	0.29	4.1	95.9	0.0	0.09	0.66	0.59	0.74	1.37	6611	871	5	0	0	0	0	logfile
✔	7PGS	13394	2023-08-14	2021-08-15	3.4	3.61	3.34	3.4	0.002	0.40	0.0	0.03	10.77	0.00	1.972	3.57	0.66	1.2	98.8	0.0	-0.33	0.80	0.79	2.03	3.4	0.003	0.54	0.0	0.03	13.21	0.00	1.871	6.13	0.08	3.3	96.7	0.0	1.64	0.74	0.82	0.81	1.41	67202	4210	2	0	1	0	33807	logfile
✔	6PCS	20306	2023-08-17	2019-06-18	2.8	3.17	—	3.0	0.005	0.40	0.0	0.02	12.69	0.03	1.658	3.31	1.31	5.7	94.1	0.1	-3.87	0.66	0.86	3.98	3.0	0.006	0.72	0.0	0.04	15.09	0.01	1.964	8.80	4.06	7.2	92.5	0.3	-1.60	1.27	0.67	0.89	3.52	72169	967	8	3015	1	0	0	logfile
✔	8C8Y	16495	2023-08-19	2023-01-21	3.03	3.24	3.11	3.1	0.002	0.40	0.0	0.03	13.66	0.00	1.796	4.85	0.00	6.2	93.7	0.1	0.29	0.77	0.81	2.49	3.1	0.006	0.66	0.0	0.04	15.10	0.01	1.989	10.17	0.67	8.3	91.6	0.1	-1.27	0.45	0.80	0.87	2.59	77316	2566	25	2667	0	0	0	logfile
✔	6PCH	20300	2023-08-17	2019-06-17	2.9	3.23	—	3.1	0.005	0.40	0.0	0.02	12.74	0.03	1.702	3.90	2.23	7.9	92.0	0.1	-4.23	0.61	0.79	3.30	3.1	0.005	0.75	0.0	0.04	15.49	0.01	1.995	11.55	5.52	8.1	91.7	0.2	-2.21	0.50	0.63	0.83	1.98	72134	964	8	3015	1	0	0	logfile
✔	7oDS	12846	2023-08-10	2021-04-30	3.1	3.32	—	3.1	0.002	0.40	0.0	0.03	11.26	0.02	2.009	5.03	0.51	1.2	98.8	0.0	0.91	0.78	0.76	2.42	3.1	0.007	0.85	0.0	0.05	15.09	0.01	1.757	13.49	0.41	4.0	96.0	0.0	-0.12	1.70	0.80	0.80	2.27	108339	9371	67	1487	132	0	0	logfile
✔	6J2X	9772	2023-08-09	2019-01-03	3.8	3.99	—	3.9	0.002	0.40	0.0	0.04	7.12	0.00	2.220	6.65	0.00	5.8	94.1	0.1	-3.52	0.80	0.70	0.49	3.9	0.004	0.78	1.0	0.04	15.31	0.00	2.050	18.52	0.40	4.7	95.2	0.1	-0.69	1.88	0.84	0.78	0.88	106176	13501	47	0	0	0	0	logfile
✔	7RZR	24775	2023-08-09	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.002	0.36	0.0	0.03	15.29	0.00	2.294	4.44	0.71	0.0	100.0	0.0	6.53	0.31	0.81	0.83	3.42	2448	324	6	0	0	0	0	logfile
✔	7oDE	12826	2023-08-22	2021-04-29	2.84	2.98	2.78	2.9	0.003	0.40	0.0	0.03	13.13	0.01	1.949	3.00	3.32	2.0	98.0	0.0	-0.12	0.82	0.80	3.61	2.9	0.008	0.68	0.0	0.04	14.58	0.01	1.852	6.52	2.15	4.7	95.3	0.0	-0.33	0.53	0.85	0.84	3.32	92524	1761	16	1990	0	0	35996	logfile
✔	7RZQ	24774	2023-08-09	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.003	0.31	0.0	0.03	15.07	0.00	2.343	5.71	0.00	0.0	100.0	0.0	5.84	0.30	0.82	0.82	2.01	2421	322	6	0	0	0	0	logfile
✔	6HD5	0201	2023-08-11	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.004	0.81	0.0	0.04	11.92	0.01	2.072	21.86	0.00	6.4	93.5	0.1	-0.40	2.04	0.46	0.56	—	9707	1234	3	0	0	0	0	logfile
✔	7oo8	13007	2023-08-13	2021-05-26	3.7	2.99	3.39	3.0	0.003	0.40	0.0	0.04	9.89	0.00	2.286	6.45	0.00	1.9	98.1	0.0	2.79	0.65	0.79	2.44	3.0	0.002	0.48	0.0	0.04	14.80	0.00	2.290	9.85	0.20	1.2	98.8	0.0	2.54	0.44	0.65	0.79	2.22	13923	1827	7	0	0	0	0	logfile

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