Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6Y5L	10701	2022-11-29	2020-02-25	3.6	3.66	2.91	3.6	0.003	0.69	0.0	0.05	14.52	0.01	2.161	6.30	0.00	7.8	92.2	0.0	-2.14	0.67	0.72	1.57	3.6	0.004	1.04	0.0	0.05	18.54	0.01	2.257	20.21	0.00	3.9	96.1	0.0	-0.04	1.09	0.69	0.74	0.99	3855	477	9	0	3	0	0	logfile
✔	7Ji0	22341	2022-11-29	2020-07-21	2.95	3.30	3.08	3.2	0.003	0.48	0.0	0.04	12.97	0.00	2.233	4.08	5.91	4.5	95.5	0.0	-3.04	0.73	0.84	4.32	3.2	0.003	0.49	0.0	0.04	15.52	0.00	2.212	4.08	2.46	4.0	96.0	0.0	1.31	0.46	0.70	0.82	3.40	3556	432	4	0	0	0	0	logfile
✔	7U10	26273	2022-11-29	2022-02-19	3.0	3.45	—	4.3	0.003	0.57	0.0	0.05	15.69	0.00	2.230	10.70	0.00	6.8	93.2	0.0	-2.82	0.37	0.64	3.73	4.2	0.004	0.66	0.0	0.07	18.03	0.00	2.205	12.01	2.91	7.5	92.5	0.0	-3.34	2.75	0.28	0.68	3.19	3429	405	6	0	12	0	0	logfile
✔	7WS2	32741	2022-11-29	2022-01-28	3.3	3.22	—	3.1	0.003	0.64	0.0	0.04	13.31	0.01	2.258	7.21	0.00	3.5	96.5	0.0	-1.86	0.68	0.78	3.08	3.1	0.004	0.67	0.0	0.05	15.31	0.00	2.124	9.67	0.27	6.4	93.6	0.0	-1.84	0.48	0.69	0.82	3.35	3343	431	3	0	0	0	0	logfile
✔	7V4D	31708	2022-11-29	2021-08-12	3.5	3.38	—	4.0	0.003	0.54	0.0	0.05	11.89	0.00	2.234	14.44	0.00	7.1	92.9	0.0	-5.68	0.41	0.80	4.67	4.1	0.003	0.67	0.0	0.05	12.86	0.00	2.200	8.46	0.00	7.7	92.3	0.0	-3.57	1.19	0.41	0.79	4.19	2376	348	6	0	0	0	0	logfile
✔	7KNU	22963	2022-11-29	2020-11-06	3.49	4.38	3.61	4.1	0.003	0.64	0.0	0.04	14.11	0.01	2.141	9.64	0.00	4.0	96.0	0.0	-1.59	0.59	0.76	1.17	4.1	0.003	0.70	0.0	0.04	16.16	0.00	2.174	14.14	0.00	4.0	96.0	0.0	-0.39	0.58	0.59	0.77	0.52	3809	467	3	0	0	0	0	logfile
✔	7F62	31470	2022-11-29	2021-06-24	3.6	4.33	—	4.1	0.003	0.65	0.0	0.04	13.21	0.00	1.925	19.89	1.38	8.1	91.6	0.2	-2.76	0.66	0.62	0.54	4.1	0.003	0.66	0.0	0.04	15.35	0.00	2.242	11.10	0.55	9.8	90.2	0.0	-1.83	1.44	0.69	0.77	1.00	3321	427	3	0	0	0	0	logfile
✔	6UUR	20900	2022-11-29	2019-10-31	3.5	3.51	—	3.6	0.004	0.76	0.0	0.05	15.65	0.00	2.644	8.15	0.00	5.3	94.7	0.0	-4.46	0.56	0.78	3.10	3.7	0.007	0.96	0.0	0.05	16.19	0.00	2.098	14.49	1.20	11.1	88.9	0.0	-4.61	2.23	0.52	0.79	3.03	2770	400	10	0	0	0	0	logfile
✔	7N98	24252	2022-11-29	2021-06-17	3.5	3.78	3.89	4.0	0.004	0.72	0.0	0.05	13.69	0.01	2.217	11.62	0.27	8.5	91.5	0.0	-1.56	0.51	0.82	3.02	4.0	0.003	0.67	0.0	0.04	16.86	0.01	2.379	7.88	0.54	8.1	91.9	0.0	0.07	0.49	0.50	0.81	1.23	3625	473	1	0	0	0	0	logfile
✔	6SKi	10225	2022-11-29	2019-08-15	2.6	2.97	2.57	2.9	0.004	0.72	0.0	0.04	16.20	0.00	2.210	8.64	1.29	1.6	98.4	0.0	-0.80	0.63	0.83	4.83	2.9	0.003	0.59	0.0	0.04	16.68	0.00	2.245	7.39	1.51	2.7	97.3	0.0	0.77	0.50	0.62	0.83	4.32	4434	569	2	0	0	0	0	logfile
✔	7P14	13155	2022-11-29	2021-07-01	3.66	3.82	3.50	3.8	0.004	0.64	0.0	0.04	16.56	0.00	2.295	7.45	0.00	2.7	97.3	0.0	1.11	0.60	0.78	2.82	3.8	0.003	0.59	0.0	0.04	16.52	0.00	2.253	9.93	0.76	3.6	96.4	0.0	2.50	0.43	0.61	0.78	1.61	3796	454	3	0	3	0	0	logfile
✔	7P6A	13223	2022-11-29	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.003	0.65	0.0	0.05	14.09	0.00	2.291	4.28	0.00	4.7	95.3	0.0	-2.61	0.82	0.55	0.89	7.80	4166	540	10	0	0	76	0	logfile
✔	7P16	13157	2022-11-29	2021-07-01	4.3	4.40	3.53	4.3	0.004	0.73	0.0	0.04	15.07	0.00	2.178	7.56	0.00	2.5	97.5	0.0	-0.08	0.65	0.77	—	4.3	0.003	0.71	0.0	0.04	14.24	0.00	2.164	11.96	0.00	3.4	96.6	0.0	0.67	1.45	0.64	0.77	—	3621	444	3	0	1	0	0	logfile
✔	7P66	13219	2022-11-29	2021-07-15	3.0	3.09	2.70	3.2	0.004	0.66	0.0	0.06	12.13	0.00	2.388	4.21	0.00	3.8	96.2	0.0	-2.50	0.48	0.82	4.06	3.2	0.005	0.62	0.0	0.05	15.20	0.00	2.173	6.37	1.72	5.5	94.5	0.0	-2.92	1.34	0.48	0.84	4.29	4060	540	5	0	0	0	0	logfile
✔	7PDD	13334	2022-11-29	2021-08-05	4.2	4.47	—	4.3	0.004	0.75	0.0	0.04	14.38	0.00	2.092	21.59	0.00	7.1	92.9	0.0	-4.11	0.79	0.75	—	4.3	0.003	0.76	0.0	0.04	13.98	0.00	2.150	21.36	0.00	5.3	94.7	0.0	-1.30	1.86	0.78	0.74	—	4516	577	2	0	0	0	0	logfile
✔	7XLT	33286	2022-11-29	2022-04-22	4.4	4.55	4.45	4.3	0.004	0.89	0.0	0.05	16.27	0.01	2.288	8.02	0.79	6.8	93.2	0.0	-2.19	0.68	0.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4985	431	4	80	0	0	0	logfile
✔	6F1Z	4172	2022-11-29	2017-11-23	3.4	4.16	—	3.4	0.004	0.97	0.0	0.06	11.17	0.01	2.264	12.14	0.81	8.6	91.4	0.0	-4.21	0.64	0.68	-1.41	3.4	0.004	1.01	0.0	0.05	16.44	0.01	2.105	24.74	0.81	7.8	92.2	0.0	-1.37	1.33	0.66	0.75	-0.09	2138	265	4	0	0	0	0	logfile
✔	6ZPG	11338	2022-11-29	2020-07-08	4.6	4.29	—	7.0	0.004	0.99	0.0	0.05	15.64	0.01	2.313	5.51	0.25	5.6	94.4	0.0	-3.85	0.60	0.55	—	6.9	0.003	0.83	0.0	0.04	15.55	0.00	2.211	18.10	0.00	7.2	92.8	0.0	0.34	1.95	0.65	0.63	—	3808	463	1	0	0	0	0	logfile
✔	7P65	13218	2022-11-29	2021-07-15	2.7	2.87	2.60	2.8	0.004	0.63	0.0	0.05	12.60	0.00	2.381	2.48	0.00	2.8	97.2	0.0	-2.90	0.55	0.86	5.81	2.8	0.007	0.70	0.0	0.05	15.71	0.00	2.309	5.67	1.26	3.3	96.7	0.0	-2.84	0.47	0.48	0.88	5.48	4145	550	5	0	0	0	0	logfile
✔	7KNT	22962	2022-11-29	2020-11-06	3.15	4.00	3.32	3.7	0.004	0.75	0.0	0.05	14.56	0.00	2.116	11.65	0.74	3.6	96.4	0.0	-0.48	0.58	0.75	1.64	3.7	0.003	0.71	0.0	0.04	16.05	0.00	2.229	12.73	0.25	2.7	97.3	0.0	0.57	0.49	0.57	0.75	0.28	3716	455	2	0	0	0	0	logfile

• ← previous
• Page 4 of 23
• next →