Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LQW	23490	2022-04-07	2021-02-15	4.47	7.28	4.96	4.6	0.002	0.77	1.0	0.05	13.42	0.00	0.911	5.63	0.12	4.6	95.4	0.1	-1.27	0.78	0.64	—	4.7	0.003	0.65	0.0	0.04	13.02	0.00	2.100	18.95	0.08	6.7	93.2	0.1	-1.19	0.89	0.88	0.83	—	25332	3374	8	0	26	0	0	logfile
✔	7CUN	30473	2022-04-04	2020-08-23	3.5	3.56	—	3.4	0.002	0.64	2.0	0.05	10.98	0.00	1.905	6.87	0.00	6.7	92.6	0.7	-2.80	0.79	0.73	1.40	3.4	0.009	0.89	0.0	0.04	13.98	0.01	1.600	11.95	0.19	8.4	91.4	0.2	-0.27	1.24	0.79	0.74	1.65	57642	7839	14	0	307	0	0	logfile
✔	7KMZ	22932	2022-04-08	2020-11-03	3.62	4.29	3.73	3.7	0.002	0.44	0.0	0.04	13.94	0.00	2.006	3.85	0.00	3.4	96.6	0.0	-0.09	0.84	0.79	1.68	3.8	0.004	0.67	0.0	0.04	15.31	0.00	2.174	9.78	0.11	4.2	95.8	0.0	-0.66	0.45	0.86	0.83	1.32	34453	4260	14	0	61	0	0	logfile
✔	6K9F	9948	2022-04-06	2019-06-15	3.7	7.50	4.15	7.2	0.002	0.45	0.0	0.03	11.87	0.00	2.356	5.29	0.00	0.0	100.0	0.0	-0.68	0.66	0.76	0.04	7.0	0.004	1.14	0.0	0.05	18.10	0.00	2.005	26.86	0.63	1.3	98.7	0.0	-0.41	3.86	0.67	0.84	0.10	8484	1044	12	0	0	0	0	logfile
✔	7ND3	12274	2022-04-07	2021-01-30	3.7	3.99	—	3.8	0.002	0.51	0.0	0.04	11.23	0.00	2.159	3.51	0.64	3.7	96.2	0.1	-0.43	0.82	0.83	1.98	3.8	0.006	0.69	0.0	0.04	13.64	0.00	2.067	10.36	0.38	4.6	95.3	0.1	0.11	0.71	0.83	0.85	1.84	25050	3194	19	0	49	0	0	logfile
✔	7DRW	30828	2022-04-06	2020-12-29	4.2	4.34	—	4.3	0.002	0.53	0.0	0.04	7.88	0.00	2.196	8.13	0.00	3.0	96.9	0.1	-2.45	0.62	0.49	—	4.3	0.004	0.76	0.0	0.04	13.14	0.01	2.032	17.10	0.03	2.7	97.2	0.1	0.39	1.84	0.73	0.68	—	71650	9108	42	0	0	0	0	logfile
✔	6YWS	10973	2022-04-23	2020-04-30	2.74	2.83	2.70	2.8	0.002	0.39	0.0	0.03	12.66	0.00	1.884	1.42	0.20	1.7	98.3	0.0	-2.78	0.76	0.86	4.39	2.8	0.005	0.57	0.0	0.04	14.50	0.00	1.760	3.34	1.09	2.3	97.7	0.0	0.59	1.19	0.75	0.86	4.09	223349	8200	51	2820	179	0	97470	logfile
✔	7NDC	12283	2022-04-07	2021-01-30	4.1	4.42	—	4.2	0.002	0.52	0.0	0.04	11.62	0.00	2.118	3.57	0.37	3.9	96.1	0.0	-0.43	0.83	0.75	—	4.2	0.003	0.59	0.0	0.04	12.14	0.00	2.100	9.47	0.03	3.6	96.4	0.0	0.30	1.80	0.85	0.79	—	30645	3852	27	0	54	0	0	logfile
✔	7C79	30296	2022-04-07	2020-05-24	2.5	3.14	—	3.0	0.002	0.59	0.0	0.04	14.01	0.00	1.974	8.76	0.09	5.7	94.2	0.1	-2.99	0.74	0.68	0.77	2.9	0.010	1.02	1.0	0.04	16.54	0.01	1.652	15.09	2.35	7.5	92.4	0.0	-0.59	0.90	0.80	0.79	1.59	27324	2519	14	331	2	0	0	logfile
✔	7JiC	22344	2022-04-04	2020-07-23	3.8	4.28	3.86	4.1	0.002	0.45	0.0	0.04	9.26	0.00	2.241	5.57	0.00	4.4	95.6	0.0	-1.97	0.68	0.80	2.30	4.1	0.008	1.09	0.0	0.04	14.28	0.00	2.219	11.23	0.17	4.0	96.0	0.0	0.43	2.00	0.68	0.81	2.60	5980	842	4	0	0	0	0	logfile
✔	7JiL	22345	2022-04-07	2020-07-23	2.8	3.31	—	3.2	0.002	0.48	0.0	0.03	14.70	0.00	1.987	6.75	2.15	9.9	90.0	0.1	-3.96	0.82	0.84	2.44	3.2	0.007	0.70	0.0	0.04	15.87	0.01	1.790	6.46	5.13	12.3	87.6	0.1	-2.42	0.39	0.75	0.79	2.78	133098	5314	64	4327	325	36	0	logfile
✔	7C8K	30306	2022-04-04	2020-06-02	3.2	3.18	—	3.1	0.002	0.49	0.0	0.04	13.54	0.00	2.001	4.88	0.00	3.2	96.8	0.0	-1.52	0.82	0.78	2.09	3.2	0.003	0.53	0.0	0.04	15.51	0.00	2.220	7.11	0.20	3.9	96.1	0.0	1.51	0.53	0.85	0.83	3.09	4853	596	3	0	6	0	0	logfile
✔	6WTH	21896	2022-04-05	2020-05-02	3.06	3.56	3.08	3.4	0.002	0.54	0.0	0.04	6.83	0.00	2.217	4.94	0.84	2.2	97.8	0.0	-3.50	0.72	0.75	3.88	3.4	0.003	0.54	0.0	0.04	12.61	0.00	2.188	7.18	0.28	3.8	96.2	0.0	-0.75	0.60	0.78	0.87	3.74	11740	1183	12	0	422	0	0	logfile
✔	7ND9	12280	2022-04-07	2021-01-30	2.8	3.07	—	3.0	0.002	0.53	0.0	0.04	11.50	0.00	2.198	4.33	0.62	4.9	94.9	0.2	-0.76	0.75	0.83	2.70	3.0	0.004	0.62	0.0	0.04	14.51	0.01	2.194	7.20	1.85	3.2	96.8	0.1	0.37	1.02	0.72	0.85	2.48	27336	3482	19	0	50	0	0	logfile
✔	7D59	30578	2022-04-09	2020-09-25	3.1	3.84	—	3.5	0.002	0.61	0.0	0.54	14.30	0.00	2.196	7.54	0.00	4.5	95.4	0.1	-3.52	0.85	0.79	0.90	3.5	0.006	1.10	0.0	0.17	16.20	0.00	2.123	11.47	0.34	5.7	94.3	0.0	-0.96	0.85	0.87	0.85	1.62	39898	5010	23	0	8	0	0	logfile
✔	6YWV	10977	2022-04-17	2020-04-30	3.03	2.99	3.03	3.0	0.002	0.41	0.0	0.03	13.34	0.00	1.859	1.64	0.74	1.6	98.4	0.0	-2.64	0.76	0.81	3.46	3.0	0.010	0.76	1.0	0.05	14.85	0.01	1.686	4.32	0.18	2.8	97.2	0.0	0.22	0.61	0.76	0.81	3.36	207559	7802	48	2529	171	0	91077	logfile
✔	6YW5	10958	2022-04-11	2020-04-29	2.85	2.95	2.83	2.9	0.002	0.37	0.0	0.03	10.00	0.00	1.841	2.52	0.14	1.6	98.4	0.0	-2.99	0.73	0.86	5.10	2.9	0.002	0.51	0.0	0.03	13.94	0.00	1.860	4.33	0.66	2.4	97.6	0.0	1.20	0.63	0.73	0.88	4.10	167548	7528	47	1435	120	0	76656	logfile
✔	7L2Z	23146	2022-04-05	2020-12-17	3.4	3.78	—	3.7	0.002	0.50	1.0	0.05	12.49	0.00	1.866	2.68	0.63	3.6	96.4	0.0	-2.91	0.74	0.75	1.52	3.7	0.004	0.62	0.0	0.05	14.08	0.00	1.862	6.98	0.33	6.9	93.1	0.0	-1.38	0.78	0.77	0.82	2.26	59631	3866	6	0	0	0	29676	logfile
✔	6VWN	21422	2022-04-09	2020-02-20	3.4	3.71	—	3.2	0.002	0.58	0.0	0.03	14.91	0.00	1.951	7.11	3.85	4.3	95.7	0.0	-3.14	0.83	0.82	1.13	3.2	0.003	0.60	0.0	0.03	16.17	0.00	1.889	15.62	0.51	6.1	93.9	0.0	-1.23	1.21	0.84	0.86	1.05	140036	5341	57	4580	55	0	0	logfile
✔	6W6K	21558	2022-04-09	2020-03-17	3.6	3.84	—	3.7	0.002	0.47	0.0	0.03	14.66	0.00	2.113	10.37	0.00	6.9	93.1	0.0	-4.28	0.70	0.59	0.52	3.7	0.007	0.92	1.0	0.04	17.11	0.01	1.510	21.72	0.44	12.4	87.6	0.1	-3.12	0.82	0.74	0.67	0.42	46934	1873	19	1534	1	0	0	logfile

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