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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7LQW | 23490 | 2022-04-07 | 2021-02-15 | 4.47 | 7.28 | 4.96 | 4.6 | 0.002 | 0.77 | 1.0 | 0.05 | 13.42 | 0.00 | 0.911 | 5.63 | 0.12 | 4.6 | 95.4 | 0.1 | -1.27 | 0.78 | 0.64 | — | 4.7 | 0.003 | 0.65 | 0.0 | 0.04 | 13.02 | 0.00 | 2.100 | 18.95 | 0.08 | 6.7 | 93.2 | 0.1 | -1.19 | 0.89 | 0.88 | 0.83 | — | 25332 | 3374 | 8 | 0 | 26 | 0 | 0 | logfile |
✔ | 7CUN | 30473 | 2022-04-04 | 2020-08-23 | 3.5 | 3.56 | — | 3.4 | 0.002 | 0.64 | 2.0 | 0.05 | 10.98 | 0.00 | 1.905 | 6.87 | 0.00 | 6.7 | 92.6 | 0.7 | -2.80 | 0.79 | 0.73 | 1.40 | 3.4 | 0.009 | 0.89 | 0.0 | 0.04 | 13.98 | 0.01 | 1.600 | 11.95 | 0.19 | 8.4 | 91.4 | 0.2 | -0.27 | 1.24 | 0.79 | 0.74 | 1.65 | 57642 | 7839 | 14 | 0 | 307 | 0 | 0 | logfile |
✔ | 7KMZ | 22932 | 2022-04-08 | 2020-11-03 | 3.62 | 4.29 | 3.73 | 3.7 | 0.002 | 0.44 | 0.0 | 0.04 | 13.94 | 0.00 | 2.006 | 3.85 | 0.00 | 3.4 | 96.6 | 0.0 | -0.09 | 0.84 | 0.79 | 1.68 | 3.8 | 0.004 | 0.67 | 0.0 | 0.04 | 15.31 | 0.00 | 2.174 | 9.78 | 0.11 | 4.2 | 95.8 | 0.0 | -0.66 | 0.45 | 0.86 | 0.83 | 1.32 | 34453 | 4260 | 14 | 0 | 61 | 0 | 0 | logfile |
✔ | 6K9F | 9948 | 2022-04-06 | 2019-06-15 | 3.7 | 7.50 | 4.15 | 7.2 | 0.002 | 0.45 | 0.0 | 0.03 | 11.87 | 0.00 | 2.356 | 5.29 | 0.00 | 0.0 | 100.0 | 0.0 | -0.68 | 0.66 | 0.76 | 0.04 | 7.0 | 0.004 | 1.14 | 0.0 | 0.05 | 18.10 | 0.00 | 2.005 | 26.86 | 0.63 | 1.3 | 98.7 | 0.0 | -0.41 | 3.86 | 0.67 | 0.84 | 0.10 | 8484 | 1044 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ND3 | 12274 | 2022-04-07 | 2021-01-30 | 3.7 | 3.99 | — | 3.8 | 0.002 | 0.51 | 0.0 | 0.04 | 11.23 | 0.00 | 2.159 | 3.51 | 0.64 | 3.7 | 96.2 | 0.1 | -0.43 | 0.82 | 0.83 | 1.98 | 3.8 | 0.006 | 0.69 | 0.0 | 0.04 | 13.64 | 0.00 | 2.067 | 10.36 | 0.38 | 4.6 | 95.3 | 0.1 | 0.11 | 0.71 | 0.83 | 0.85 | 1.84 | 25050 | 3194 | 19 | 0 | 49 | 0 | 0 | logfile |
✔ | 7DRW | 30828 | 2022-04-06 | 2020-12-29 | 4.2 | 4.34 | — | 4.3 | 0.002 | 0.53 | 0.0 | 0.04 | 7.88 | 0.00 | 2.196 | 8.13 | 0.00 | 3.0 | 96.9 | 0.1 | -2.45 | 0.62 | 0.49 | — | 4.3 | 0.004 | 0.76 | 0.0 | 0.04 | 13.14 | 0.01 | 2.032 | 17.10 | 0.03 | 2.7 | 97.2 | 0.1 | 0.39 | 1.84 | 0.73 | 0.68 | — | 71650 | 9108 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YWS | 10973 | 2022-04-23 | 2020-04-30 | 2.74 | 2.83 | 2.70 | 2.8 | 0.002 | 0.39 | 0.0 | 0.03 | 12.66 | 0.00 | 1.884 | 1.42 | 0.20 | 1.7 | 98.3 | 0.0 | -2.78 | 0.76 | 0.86 | 4.39 | 2.8 | 0.005 | 0.57 | 0.0 | 0.04 | 14.50 | 0.00 | 1.760 | 3.34 | 1.09 | 2.3 | 97.7 | 0.0 | 0.59 | 1.19 | 0.75 | 0.86 | 4.09 | 223349 | 8200 | 51 | 2820 | 179 | 0 | 97470 | logfile |
✔ | 7NDC | 12283 | 2022-04-07 | 2021-01-30 | 4.1 | 4.42 | — | 4.2 | 0.002 | 0.52 | 0.0 | 0.04 | 11.62 | 0.00 | 2.118 | 3.57 | 0.37 | 3.9 | 96.1 | 0.0 | -0.43 | 0.83 | 0.75 | — | 4.2 | 0.003 | 0.59 | 0.0 | 0.04 | 12.14 | 0.00 | 2.100 | 9.47 | 0.03 | 3.6 | 96.4 | 0.0 | 0.30 | 1.80 | 0.85 | 0.79 | — | 30645 | 3852 | 27 | 0 | 54 | 0 | 0 | logfile |
✔ | 7C79 | 30296 | 2022-04-07 | 2020-05-24 | 2.5 | 3.14 | — | 3.0 | 0.002 | 0.59 | 0.0 | 0.04 | 14.01 | 0.00 | 1.974 | 8.76 | 0.09 | 5.7 | 94.2 | 0.1 | -2.99 | 0.74 | 0.68 | 0.77 | 2.9 | 0.010 | 1.02 | 1.0 | 0.04 | 16.54 | 0.01 | 1.652 | 15.09 | 2.35 | 7.5 | 92.4 | 0.0 | -0.59 | 0.90 | 0.80 | 0.79 | 1.59 | 27324 | 2519 | 14 | 331 | 2 | 0 | 0 | logfile |
✔ | 7JiC | 22344 | 2022-04-04 | 2020-07-23 | 3.8 | 4.28 | 3.86 | 4.1 | 0.002 | 0.45 | 0.0 | 0.04 | 9.26 | 0.00 | 2.241 | 5.57 | 0.00 | 4.4 | 95.6 | 0.0 | -1.97 | 0.68 | 0.80 | 2.30 | 4.1 | 0.008 | 1.09 | 0.0 | 0.04 | 14.28 | 0.00 | 2.219 | 11.23 | 0.17 | 4.0 | 96.0 | 0.0 | 0.43 | 2.00 | 0.68 | 0.81 | 2.60 | 5980 | 842 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JiL | 22345 | 2022-04-07 | 2020-07-23 | 2.8 | 3.31 | — | 3.2 | 0.002 | 0.48 | 0.0 | 0.03 | 14.70 | 0.00 | 1.987 | 6.75 | 2.15 | 9.9 | 90.0 | 0.1 | -3.96 | 0.82 | 0.84 | 2.44 | 3.2 | 0.007 | 0.70 | 0.0 | 0.04 | 15.87 | 0.01 | 1.790 | 6.46 | 5.13 | 12.3 | 87.6 | 0.1 | -2.42 | 0.39 | 0.75 | 0.79 | 2.78 | 133098 | 5314 | 64 | 4327 | 325 | 36 | 0 | logfile |
✔ | 7C8K | 30306 | 2022-04-04 | 2020-06-02 | 3.2 | 3.18 | — | 3.1 | 0.002 | 0.49 | 0.0 | 0.04 | 13.54 | 0.00 | 2.001 | 4.88 | 0.00 | 3.2 | 96.8 | 0.0 | -1.52 | 0.82 | 0.78 | 2.09 | 3.2 | 0.003 | 0.53 | 0.0 | 0.04 | 15.51 | 0.00 | 2.220 | 7.11 | 0.20 | 3.9 | 96.1 | 0.0 | 1.51 | 0.53 | 0.85 | 0.83 | 3.09 | 4853 | 596 | 3 | 0 | 6 | 0 | 0 | logfile |
✔ | 6WTH | 21896 | 2022-04-05 | 2020-05-02 | 3.06 | 3.56 | 3.08 | 3.4 | 0.002 | 0.54 | 0.0 | 0.04 | 6.83 | 0.00 | 2.217 | 4.94 | 0.84 | 2.2 | 97.8 | 0.0 | -3.50 | 0.72 | 0.75 | 3.88 | 3.4 | 0.003 | 0.54 | 0.0 | 0.04 | 12.61 | 0.00 | 2.188 | 7.18 | 0.28 | 3.8 | 96.2 | 0.0 | -0.75 | 0.60 | 0.78 | 0.87 | 3.74 | 11740 | 1183 | 12 | 0 | 422 | 0 | 0 | logfile |
✔ | 7ND9 | 12280 | 2022-04-07 | 2021-01-30 | 2.8 | 3.07 | — | 3.0 | 0.002 | 0.53 | 0.0 | 0.04 | 11.50 | 0.00 | 2.198 | 4.33 | 0.62 | 4.9 | 94.9 | 0.2 | -0.76 | 0.75 | 0.83 | 2.70 | 3.0 | 0.004 | 0.62 | 0.0 | 0.04 | 14.51 | 0.01 | 2.194 | 7.20 | 1.85 | 3.2 | 96.8 | 0.1 | 0.37 | 1.02 | 0.72 | 0.85 | 2.48 | 27336 | 3482 | 19 | 0 | 50 | 0 | 0 | logfile |
✔ | 7D59 | 30578 | 2022-04-09 | 2020-09-25 | 3.1 | 3.84 | — | 3.5 | 0.002 | 0.61 | 0.0 | 0.54 | 14.30 | 0.00 | 2.196 | 7.54 | 0.00 | 4.5 | 95.4 | 0.1 | -3.52 | 0.85 | 0.79 | 0.90 | 3.5 | 0.006 | 1.10 | 0.0 | 0.17 | 16.20 | 0.00 | 2.123 | 11.47 | 0.34 | 5.7 | 94.3 | 0.0 | -0.96 | 0.85 | 0.87 | 0.85 | 1.62 | 39898 | 5010 | 23 | 0 | 8 | 0 | 0 | logfile |
✔ | 6YWV | 10977 | 2022-04-17 | 2020-04-30 | 3.03 | 2.99 | 3.03 | 3.0 | 0.002 | 0.41 | 0.0 | 0.03 | 13.34 | 0.00 | 1.859 | 1.64 | 0.74 | 1.6 | 98.4 | 0.0 | -2.64 | 0.76 | 0.81 | 3.46 | 3.0 | 0.010 | 0.76 | 1.0 | 0.05 | 14.85 | 0.01 | 1.686 | 4.32 | 0.18 | 2.8 | 97.2 | 0.0 | 0.22 | 0.61 | 0.76 | 0.81 | 3.36 | 207559 | 7802 | 48 | 2529 | 171 | 0 | 91077 | logfile |
✔ | 6YW5 | 10958 | 2022-04-11 | 2020-04-29 | 2.85 | 2.95 | 2.83 | 2.9 | 0.002 | 0.37 | 0.0 | 0.03 | 10.00 | 0.00 | 1.841 | 2.52 | 0.14 | 1.6 | 98.4 | 0.0 | -2.99 | 0.73 | 0.86 | 5.10 | 2.9 | 0.002 | 0.51 | 0.0 | 0.03 | 13.94 | 0.00 | 1.860 | 4.33 | 0.66 | 2.4 | 97.6 | 0.0 | 1.20 | 0.63 | 0.73 | 0.88 | 4.10 | 167548 | 7528 | 47 | 1435 | 120 | 0 | 76656 | logfile |
✔ | 7L2Z | 23146 | 2022-04-05 | 2020-12-17 | 3.4 | 3.78 | — | 3.7 | 0.002 | 0.50 | 1.0 | 0.05 | 12.49 | 0.00 | 1.866 | 2.68 | 0.63 | 3.6 | 96.4 | 0.0 | -2.91 | 0.74 | 0.75 | 1.52 | 3.7 | 0.004 | 0.62 | 0.0 | 0.05 | 14.08 | 0.00 | 1.862 | 6.98 | 0.33 | 6.9 | 93.1 | 0.0 | -1.38 | 0.78 | 0.77 | 0.82 | 2.26 | 59631 | 3866 | 6 | 0 | 0 | 0 | 29676 | logfile |
✔ | 6VWN | 21422 | 2022-04-09 | 2020-02-20 | 3.4 | 3.71 | — | 3.2 | 0.002 | 0.58 | 0.0 | 0.03 | 14.91 | 0.00 | 1.951 | 7.11 | 3.85 | 4.3 | 95.7 | 0.0 | -3.14 | 0.83 | 0.82 | 1.13 | 3.2 | 0.003 | 0.60 | 0.0 | 0.03 | 16.17 | 0.00 | 1.889 | 15.62 | 0.51 | 6.1 | 93.9 | 0.0 | -1.23 | 1.21 | 0.84 | 0.86 | 1.05 | 140036 | 5341 | 57 | 4580 | 55 | 0 | 0 | logfile |
✔ | 6W6K | 21558 | 2022-04-09 | 2020-03-17 | 3.6 | 3.84 | — | 3.7 | 0.002 | 0.47 | 0.0 | 0.03 | 14.66 | 0.00 | 2.113 | 10.37 | 0.00 | 6.9 | 93.1 | 0.0 | -4.28 | 0.70 | 0.59 | 0.52 | 3.7 | 0.007 | 0.92 | 1.0 | 0.04 | 17.11 | 0.01 | 1.510 | 21.72 | 0.44 | 12.4 | 87.6 | 0.1 | -3.12 | 0.82 | 0.74 | 0.67 | 0.42 | 46934 | 1873 | 19 | 1534 | 1 | 0 | 0 | logfile |