Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7BL5	12218	2023-08-24	2021-01-18	3.3	3.74	—	3.5	0.002	0.45	0.0	0.03	14.15	0.00	2.029	11.79	0.11	5.7	94.3	0.0	-1.05	0.75	0.79	1.02	3.5	0.005	0.69	1.0	0.04	16.08	0.00	1.883	20.41	1.05	9.3	90.7	0.0	-1.99	0.64	0.76	0.84	1.01	98927	4348	46	3033	3	27	0	logfile
✘	8DK2	27481	2023-08-17	2022-07-01	4.1	4.81	4.17	4.1	0.002	0.47	0.0	0.04	13.54	0.00	1.988	7.72	2.88	3.7	96.3	0.0	2.05	0.84	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23727	2840	12	52	4	0	0	logfile
✔	7X9C	33071	2023-08-10	2022-03-15	3.0	3.24	—	3.2	0.002	0.52	0.0	0.04	10.16	0.00	2.208	8.69	0.00	3.2	96.8	0.0	-2.49	0.58	0.71	1.58	3.2	0.004	0.72	0.0	0.04	14.54	0.00	2.141	12.76	2.39	3.1	96.9	0.0	-0.27	0.64	0.60	0.78	1.79	7219	945	5	0	0	0	0	logfile
✔	7WVV	32859	2023-08-10	2022-02-11	2.9	3.01	—	3.1	0.002	0.45	0.0	0.04	12.21	0.00	2.286	7.42	0.00	2.2	97.8	0.0	0.74	0.59	0.74	2.55	3.0	0.003	0.55	0.0	0.04	15.35	0.00	2.136	9.20	1.89	2.9	97.1	0.0	0.43	0.45	0.62	0.79	2.80	7020	911	5	0	0	0	0	logfile
✔	8D5C	27208	2023-08-19	2022-06-04	3.9	4.25	3.98	4.2	0.002	0.48	0.0	0.04	13.15	0.00	1.991	32.36	0.00	7.0	93.0	0.0	-1.61	0.65	0.64	1.09	4.2	0.003	0.55	0.0	0.04	14.87	0.00	1.991	38.84	0.04	10.7	89.3	0.0	-1.68	1.24	0.67	0.67	1.04	26109	2730	15	0	0	0	4739	logfile
✔	8CSV	26972	2023-08-09	2022-05-13	2.7	2.53	2.72	2.6	0.002	0.47	0.0	0.04	11.85	0.00	2.246	2.73	1.03	2.7	97.1	0.2	0.82	0.53	0.85	5.33	2.6	0.003	0.53	0.0	0.04	15.82	0.00	2.175	5.19	1.03	2.9	96.9	0.2	2.04	0.72	0.57	0.88	4.86	3712	483	3	0	0	48	0	logfile
✔	6XAS	22114	2023-08-26	2020-06-04	3.8	3.01	3.14	2.9	0.002	0.49	0.0	0.04	10.96	0.00	1.961	4.92	1.49	2.2	97.8	0.0	-2.00	0.62	0.55	1.72	3.0	0.004	0.64	0.0	0.04	14.52	0.00	1.788	8.34	0.31	4.2	95.8	0.0	0.03	0.74	0.61	0.53	1.54	46887	5804	16	73	3	0	0	logfile
✔	7N5B	24185	2023-08-11	2021-06-05	3.8	4.41	3.97	4.3	0.002	0.48	0.0	0.04	14.24	0.00	1.903	6.38	0.20	2.3	97.7	0.0	2.06	0.70	0.77	1.53	4.3	0.003	0.57	0.0	0.04	16.25	0.00	1.978	7.86	0.10	3.0	97.0	0.0	2.68	0.45	0.66	0.78	1.67	9122	1160	4	0	6	0	0	logfile
✘	7ZMD	14795	2023-08-19	2022-04-19	2.93	3.18	2.97	3.2	0.002	0.52	0.0	0.08	13.13	0.01	2.146	3.80	0.00	2.5	97.5	0.0	0.93	0.68	0.78	3.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18400	1191	2	0	0	0	9106	logfile
✔	7TYM	26185	2023-08-12	2022-02-13	3.4	3.43	—	3.5	0.002	0.54	0.0	0.04	15.94	0.00	2.175	8.12	0.00	7.1	92.8	0.1	-1.35	0.73	0.81	2.62	3.4	0.003	0.57	0.0	0.04	16.28	0.00	2.159	8.66	0.15	8.0	92.0	0.0	-1.76	1.12	0.73	0.82	3.21	12112	1542	2	0	0	0	0	logfile
✔	7EPD	31238	2023-08-15	2021-04-26	3.9	2.74	—	3.5	0.002	0.45	0.0	0.04	12.27	0.00	2.232	7.06	0.00	4.0	96.0	0.0	-2.46	0.69	0.63	0.57	3.5	0.004	0.64	0.0	0.04	14.15	0.00	2.224	13.87	0.45	5.3	94.7	0.0	0.04	1.20	0.75	0.74	1.44	10710	1569	2	0	0	0	0	logfile
✔	6W77	21569	2023-08-26	2020-03-18	3.6	3.44	—	3.3	0.002	0.53	0.0	0.03	14.96	0.00	2.084	9.33	0.12	6.1	93.7	0.2	-3.22	0.73	0.67	0.91	3.3	0.007	0.92	0.0	0.05	16.99	0.01	1.829	19.25	0.50	12.0	87.8	0.2	-2.57	2.05	0.77	0.72	0.90	47940	1949	18	1519	0	0	0	logfile
✔	7YGD	33816	2023-08-10	2022-07-11	3.41	4.13	3.42	3.3	0.002	0.49	0.0	0.03	15.33	0.00	2.100	14.25	0.00	0.0	0.0	0.0	—	0.90	0.81	—	3.3	0.007	0.75	0.0	0.04	17.38	0.01	1.823	32.82	0.00	0.0	0.0	0.0	—	1.50	0.91	0.89	—	8313	0	3	389	6	0	0	logfile
✔	7YEG	33772	2023-08-10	2022-07-05	3.73	3.29	3.71	3.5	0.002	0.48	0.0	0.04	13.17	0.00	2.191	5.16	0.37	3.1	96.8	0.0	-4.62	0.61	0.57	0.60	3.5	0.003	0.69	0.0	0.04	15.76	0.00	2.056	11.23	0.26	5.0	95.0	0.0	-1.54	3.07	0.58	0.55	1.13	49974	6306	24	0	51	0	0	logfile
✔	7V0X	26952	2023-08-09	2022-05-11	3.0	2.83	2.92	2.9	0.002	0.63	0.0	0.04	19.06	0.01	2.211	6.52	5.05	4.0	96.0	0.0	0.72	0.61	0.88	3.78	2.9	0.002	0.53	0.0	0.04	19.08	0.00	2.176	7.23	4.38	4.9	95.1	0.0	1.77	0.47	0.60	0.88	3.17	2818	375	1	0	0	0	0	logfile
✔	6GC8	4383	2023-08-21	2018-04-17	3.8	4.18	—	3.9	0.002	0.57	0.0	0.03	12.93	0.00	2.129	3.87	0.16	6.3	93.5	0.2	-4.04	0.71	0.60	0.92	3.9	0.005	0.77	0.0	0.04	16.33	0.01	1.836	30.15	1.36	12.1	87.7	0.2	-2.45	2.92	0.83	0.79	0.75	88884	3090	42	3016	6	42	0	logfile
✔	8DQL	27656	2023-08-09	2022-07-19	3.0	2.95	2.90	2.9	0.002	0.47	0.0	0.04	14.89	0.00	2.309	5.10	0.00	3.6	96.4	0.0	2.01	0.74	0.81	1.75	2.9	0.003	0.60	0.0	0.04	16.66	0.00	2.244	6.10	2.06	4.4	95.6	0.0	1.72	3.33	0.76	0.84	1.87	6402	771	3	0	0	0	0	logfile
✔	6Li3	0902	2023-08-10	2019-12-10	3.32	3.48	—	3.8	0.002	0.56	0.0	0.04	13.86	0.00	2.124	7.66	0.00	2.4	97.6	0.0	-2.69	0.55	0.68	0.78	3.6	0.003	0.65	0.0	0.04	16.65	0.00	2.150	9.72	0.33	3.8	96.2	0.0	-0.12	1.35	0.59	0.77	1.61	8289	1045	5	0	0	0	0	logfile
✔	7TYo	26190	2023-08-11	2022-02-14	2.7	2.09	2.60	2.4	0.002	0.47	0.0	0.04	12.83	0.00	2.176	5.50	1.37	2.0	98.0	0.0	-3.13	0.54	0.74	3.81	2.7	0.004	0.66	0.0	0.04	16.35	0.00	2.094	8.42	2.11	2.6	97.4	0.0	0.54	1.06	0.55	0.76	3.39	9052	1141	6	0	4	0	0	logfile
✔	8E4o	27894	2023-08-09	2022-08-18	3.43	3.87	3.39	3.6	0.002	0.44	0.0	0.03	11.67	0.01	2.257	5.45	0.45	1.8	98.2	0.0	2.99	0.68	0.73	2.38	3.7	0.003	0.66	0.0	0.03	13.35	0.00	2.024	6.81	0.19	3.0	97.0	0.0	2.90	0.72	0.72	0.80	1.84	53496	3588	8	0	4	0	26024	logfile

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