Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JGF	22325	2023-02-17	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.63	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.8	0.002	0.47	0.0	0.04	13.18	0.00	2.190	46.17	0.41	4.8	95.2	0.0	1.10	0.62	0.41	0.45	—	4477	532	1	0	0	0	30	logfile
✔	7V0X	26952	2023-02-17	2022-05-11	3.0	2.83	2.92	2.9	0.002	0.63	0.0	0.04	19.06	0.01	2.211	6.52	5.05	4.0	96.0	0.0	0.72	0.61	0.88	3.78	2.9	0.002	0.53	0.0	0.04	19.08	0.00	2.176	7.23	4.38	4.9	95.1	0.0	1.77	0.47	0.60	0.88	3.17	2818	375	1	0	0	0	0	logfile
✔	8DMK	27542	2023-02-18	2022-07-08	3.7	4.20	3.87	4.0	0.002	0.56	0.0	0.04	14.54	0.00	1.425	12.24	0.00	6.4	93.6	0.0	-1.18	0.76	0.66	1.02	4.0	0.003	0.64	0.0	0.04	15.98	0.00	2.145	17.98	0.37	7.0	93.0	0.0	-1.54	1.09	0.79	0.74	1.09	7348	917	6	0	6	0	0	logfile
✘	7Fii	31598	2023-02-19	2021-07-31	4.3	4.37	—	4.1	0.002	0.36	0.0	0.04	8.97	0.00	2.073	1.59	0.00	0.9	99.1	0.0	3.08	0.64	0.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8765	1522	6	0	0	0	0	logfile
✔	8CYA	27072	2023-02-22	2022-05-23	2.7	3.50	2.73	3.0	0.002	0.44	0.0	0.04	11.93	0.00	1.935	6.76	0.06	4.8	95.0	0.2	0.52	0.83	0.75	1.85	3.1	0.004	0.49	0.0	0.04	13.00	0.00	1.982	10.17	0.53	5.3	94.6	0.2	0.03	0.39	0.85	0.79	2.17	57833	3681	29	0	88	0	27935	logfile
✔	7PMY	13544	2023-02-19	2021-09-04	3.8	4.01	3.76	3.9	0.002	0.46	0.0	0.04	9.15	0.00	2.008	5.14	1.40	2.0	97.9	0.2	0.55	0.66	0.79	2.91	3.9	0.003	0.54	0.0	0.04	12.23	0.00	2.000	7.81	0.53	3.7	96.3	0.0	0.73	0.78	0.65	0.80	2.00	10499	659	2	0	0	0	5276	logfile
✔	8B1U	15805	2023-02-24	2022-09-12	3.8	3.92	3.70	3.8	0.002	0.51	0.0	0.04	12.03	0.00	2.172	5.77	1.51	1.1	98.9	0.0	-0.66	0.77	0.78	1.88	3.8	0.003	0.62	0.0	0.04	16.44	0.00	2.166	9.54	0.16	2.2	97.8	0.0	0.87	1.38	0.79	0.82	2.03	24127	2886	6	51	2	0	0	logfile
✔	7PN1	13545	2023-02-19	2021-09-04	3.9	4.15	3.83	4.0	0.002	0.57	0.0	0.04	12.95	0.00	2.053	6.26	0.00	2.8	97.2	0.0	1.31	0.61	0.80	1.17	4.0	0.002	0.54	0.0	0.04	14.49	0.00	1.939	7.42	0.18	2.6	97.4	0.0	1.52	0.97	0.60	0.80	0.75	10384	657	1	0	0	0	5237	logfile
✔	7LBE	23252	2023-02-21	2021-01-07	2.9	3.31	—	3.2	0.002	0.44	0.0	0.04	12.74	0.00	2.200	3.47	0.00	2.8	97.2	0.0	1.20	0.69	0.82	3.12	3.2	0.005	0.65	0.0	0.05	15.87	0.00	2.132	8.18	1.84	3.9	96.1	0.0	0.50	0.44	0.70	0.85	2.79	13511	1653	13	0	27	0	0	logfile
✔	7PY1	13707	2023-02-26	2021-10-08	3.8	2.55	—	2.2	0.002	0.56	0.0	0.04	16.22	0.00	2.154	8.07	0.04	4.8	95.2	0.1	-0.59	0.75	0.75	1.14	2.2	0.004	0.73	0.0	0.04	18.19	0.00	1.921	11.78	0.57	6.5	93.4	0.1	-0.72	0.56	0.76	0.75	1.16	27442	3307	10	75	3	0	0	logfile
✔	6FLP	4274	2023-02-25	2018-01-26	4.1	4.58	4.28	4.2	0.002	0.57	0.0	0.04	12.69	0.00	2.062	8.85	0.04	6.3	93.7	0.1	-3.10	0.85	0.83	—	4.2	0.003	0.63	0.0	0.04	14.74	0.00	2.132	11.65	0.00	6.6	93.3	0.1	-1.03	1.36	0.86	0.84	—	26512	3184	9	80	3	0	0	logfile
✔	7XMS	33303	2023-02-18	2022-04-26	2.9	3.10	2.83	3.2	0.002	0.46	0.0	0.04	10.09	0.00	2.251	6.90	0.00	2.9	97.1	0.0	-4.06	0.55	0.65	1.49	3.1	0.004	0.76	0.0	0.04	14.98	0.00	2.040	14.79	1.73	3.7	96.3	0.0	-0.47	0.80	0.61	0.76	2.09	8370	1113	6	0	0	0	0	logfile
✔	7FHo	31588	2023-02-23	2021-07-29	2.8	2.98	—	3.1	0.002	0.57	0.0	0.04	12.96	0.00	2.179	6.20	0.17	3.1	96.9	0.0	1.34	0.64	0.80	3.27	3.0	0.003	0.56	0.0	0.04	15.70	0.00	2.142	6.86	0.61	2.8	97.2	0.0	2.82	1.11	0.65	0.84	2.97	10648	1294	4	0	6	0	0	logfile
✘	6WB0	21583	2023-02-18	2020-03-26	4.2	4.26	—	4.2	0.002	0.51	0.0	0.04	11.69	0.00	2.131	11.89	0.81	4.1	95.9	0.0	-4.46	0.79	0.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8518	948	4	77	0	0	0	logfile
✔	7UQX	26701	2023-02-19	2022-04-20	3.3	2.35	3.18	2.0	0.002	0.50	0.0	0.04	10.15	0.00	1.752	9.27	0.19	3.3	96.7	0.0	0.26	0.74	0.71	2.97	1.9	0.003	0.61	0.0	0.04	14.05	0.00	2.149	12.36	0.29	4.0	96.0	0.0	0.03	0.95	0.74	0.75	2.83	9491	1154	5	2	5	0	0	logfile
✔	7TQV	26073	2023-02-22	2022-01-27	3.43	3.72	—	3.7	0.002	0.38	0.0	0.04	7.79	0.00	2.162	5.00	0.82	3.8	96.2	0.0	-0.34	0.68	0.69	2.18	3.6	0.003	0.56	0.0	0.04	12.72	0.00	2.213	8.13	0.33	3.7	96.3	0.0	-0.50	1.51	0.73	0.76	2.12	17792	2083	8	66	0	0	0	logfile
✔	7oNL	12997	2023-02-21	2021-05-25	3.9	3.35	3.58	3.6	0.002	0.38	0.0	0.04	9.17	0.00	2.180	5.51	0.41	1.5	98.5	0.0	2.97	0.64	0.80	2.02	3.6	0.003	0.63	0.0	0.04	13.87	0.00	2.200	9.71	0.74	1.4	98.6	0.0	2.16	0.57	0.64	0.81	1.09	13923	1827	7	0	0	0	0	logfile
✔	7JGD	22323	2023-02-23	2020-07-19	3.38	3.68	—	3.6	0.002	0.43	0.0	0.05	12.94	0.00	2.123	11.45	0.00	3.9	96.1	0.0	1.18	0.61	0.66	2.22	3.6	0.003	0.53	0.0	0.05	14.82	0.00	2.054	14.21	0.08	7.3	92.7	0.0	0.43	0.52	0.63	0.71	1.77	20292	1435	1	0	0	0	8505	logfile
✔	6Z3Y	11066	2023-02-17	2020-05-22	3.51	3.78	3.53	3.6	0.002	0.52	0.0	0.04	11.75	0.00	2.269	9.32	1.68	5.6	94.4	0.0	0.09	0.59	0.70	0.69	3.6	0.003	0.83	0.0	0.05	14.87	0.00	2.036	17.43	0.31	8.8	91.2	0.0	-0.62	0.72	0.59	0.71	0.99	6131	771	2	0	0	0	0	logfile
✔	7CR3	30446	2023-02-21	2020-08-12	3.6	3.76	—	3.7	0.002	0.55	0.0	0.04	14.56	0.00	2.232	12.46	0.00	3.3	96.7	0.0	-3.24	0.61	0.75	1.93	3.7	0.003	0.88	0.0	0.04	16.74	0.00	2.172	16.93	0.42	3.4	96.6	0.0	0.98	2.01	0.60	0.72	1.15	15924	1968	8	0	0	0	0	logfile

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