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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6PLX | 20379 | 2023-02-21 | 2019-07-01 | 2.9 | 3.61 | — | 3.5 | 0.010 | 1.11 | 0.0 | 0.06 | 10.08 | 0.01 | 2.316 | 6.04 | 0.00 | 3.2 | 96.8 | 0.0 | -5.10 | 0.56 | 0.83 | 4.25 | 3.5 | 0.003 | 0.67 | 0.0 | 0.04 | 15.17 | 0.00 | 2.169 | 9.09 | 2.26 | 3.2 | 96.8 | 0.0 | -1.27 | 0.68 | 0.53 | 0.81 | 3.48 | 14240 | 1730 | 15 | 0 | 20 | 0 | 0 | logfile |
✔ | 7K3A | 22654 | 2023-02-23 | 2020-09-10 | 4.2 | 4.49 | — | 4.2 | 0.004 | 0.73 | 0.0 | 0.05 | 12.62 | 0.00 | 2.053 | 12.86 | 0.17 | 5.1 | 94.9 | 0.0 | -0.62 | 0.85 | 0.73 | — | 4.2 | 0.003 | 0.68 | 0.0 | 0.05 | 12.67 | 0.00 | 2.099 | 16.25 | 0.00 | 4.8 | 95.2 | 0.0 | -0.52 | 2.08 | 0.91 | 0.83 | — | 21426 | 2691 | 27 | 0 | 54 | 0 | 0 | logfile |
✔ | 7EoS | 31229 | 2023-02-25 | 2021-04-22 | 3.9 | 4.43 | — | 3.9 | 0.001 | 0.40 | 0.0 | 0.04 | 9.12 | 0.00 | 2.254 | 6.49 | 1.89 | 4.1 | 95.8 | 0.1 | 0.47 | 0.88 | 0.78 | 1.32 | 4.0 | 0.004 | 0.70 | 0.0 | 0.04 | 12.64 | 0.00 | 2.106 | 15.01 | 0.30 | 6.6 | 93.3 | 0.1 | -0.26 | 2.26 | 0.90 | 0.83 | 1.47 | 24600 | 3106 | 8 | 0 | 18 | 0 | 0 | logfile |
✔ | 6SSX | 10307 | 2023-02-17 | 2019-09-09 | 2.98 | 3.11 | — | 3.1 | 0.008 | 0.94 | 0.0 | 0.07 | 14.94 | 0.00 | 2.424 | 6.14 | 4.26 | 12.6 | 87.4 | 0.0 | -4.73 | 0.65 | 0.82 | 4.81 | 3.0 | 0.008 | 0.80 | 0.0 | 0.06 | 16.95 | 0.00 | 2.222 | 13.38 | 4.47 | 13.2 | 86.8 | 0.0 | -5.14 | 0.77 | 0.65 | 0.86 | 4.75 | 4900 | 730 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7EoR | 31228 | 2023-02-24 | 2021-04-22 | 4.0 | 4.40 | — | 4.1 | 0.002 | 0.42 | 0.0 | 0.04 | 9.09 | 0.00 | 2.227 | 7.42 | 1.64 | 3.2 | 96.8 | 0.0 | 0.66 | 0.86 | 0.76 | — | 4.1 | 0.004 | 0.76 | 0.0 | 0.05 | 13.42 | 0.00 | 2.112 | 16.82 | 0.19 | 6.3 | 93.7 | 0.0 | -0.91 | 2.23 | 0.88 | 0.82 | — | 24204 | 3030 | 8 | 0 | 16 | 0 | 0 | logfile |
✔ | 7TMP | 25998 | 2023-02-28 | 2022-01-19 | 3.3 | 3.47 | — | 3.4 | 0.004 | 0.54 | 0.0 | 0.04 | 12.38 | 0.00 | 1.989 | 8.91 | 0.38 | 3.5 | 96.5 | 0.1 | 1.23 | 0.78 | 0.84 | 3.41 | 3.4 | 0.003 | 0.54 | 0.0 | 0.04 | 14.07 | 0.00 | 1.940 | 8.56 | 0.29 | 2.9 | 97.1 | 0.0 | 1.21 | 0.28 | 0.79 | 0.86 | 2.88 | 32105 | 4805 | 16 | 0 | 2 | 0 | 0 | logfile |
✔ | 6VP9 | 21307 | 2023-02-18 | 2020-02-02 | 3.46 | 3.63 | — | 3.6 | 0.007 | 0.83 | 0.0 | 0.04 | 15.37 | 0.01 | 2.032 | 21.68 | 0.00 | 9.4 | 90.6 | 0.0 | -3.63 | 0.77 | 0.86 | 1.78 | 3.6 | 0.003 | 0.62 | 0.0 | 0.04 | 16.83 | 0.00 | 2.234 | 8.46 | 0.11 | 6.0 | 94.0 | 0.0 | -0.28 | 0.45 | 0.76 | 0.86 | 1.22 | 8610 | 1077 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 6KS8 | 0760 | 2023-02-23 | 2019-08-23 | 4.69 | 4.76 | — | 4.6 | 0.001 | 0.39 | 0.0 | 0.04 | 7.12 | 0.00 | 2.228 | 5.86 | 0.01 | 4.4 | 95.5 | 0.0 | -3.61 | 0.77 | 0.67 | — | 4.6 | 0.003 | 0.73 | 0.0 | 0.05 | 11.70 | 0.00 | 2.011 | 17.70 | 0.01 | 3.4 | 96.6 | 0.0 | -0.29 | 1.89 | 0.81 | 0.73 | — | 61943 | 8120 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RMG | 4936 | 2023-02-23 | 2019-05-06 | 3.4 | 3.70 | — | 3.6 | 0.011 | 1.44 | 0.0 | 0.08 | 11.91 | 0.01 | 2.042 | 4.20 | 0.10 | 8.7 | 91.3 | 0.0 | -3.98 | 0.72 | 0.80 | 3.37 | 3.6 | 0.003 | 0.62 | 0.0 | 0.04 | 14.68 | 0.00 | 1.880 | 11.74 | 0.20 | 7.1 | 92.9 | 0.0 | 0.45 | 1.17 | 0.77 | 0.86 | 2.89 | 19137 | 1176 | 5 | 0 | 19 | 0 | 9327 | logfile |
✔ | 6SST | 10305 | 2023-02-17 | 2019-09-09 | 3.4 | 3.46 | — | 3.4 | 0.009 | 0.94 | 0.0 | 0.07 | 16.79 | 0.00 | 2.430 | 5.73 | 2.13 | 10.1 | 89.9 | 0.0 | -4.47 | 0.56 | 0.80 | 6.33 | 3.4 | 0.008 | 0.76 | 0.0 | 0.06 | 14.95 | 0.00 | 2.266 | 10.97 | 0.43 | 17.2 | 82.8 | 0.0 | -4.97 | 0.49 | 0.59 | 0.84 | 4.82 | 4900 | 730 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7D46 | 30571 | 2023-02-25 | 2020-09-22 | 4.0 | 4.10 | — | 4.1 | 0.008 | 0.93 | 0.0 | 0.05 | 15.19 | 0.00 | 2.116 | 18.69 | 0.42 | 17.5 | 82.4 | 0.1 | -5.10 | 0.77 | 0.82 | — | 4.1 | 0.004 | 0.75 | 0.0 | 0.05 | 16.77 | 0.00 | 2.095 | 15.17 | 0.77 | 9.7 | 90.3 | 0.0 | -1.88 | 1.58 | 0.76 | 0.81 | — | 26636 | 3481 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N3A | 9349 | 2023-02-17 | 2018-11-14 | 3.3 | 3.44 | — | 3.6 | 0.008 | 1.14 | 0.0 | 0.05 | 14.53 | 0.01 | 2.469 | 17.25 | 0.00 | 8.9 | 91.1 | 0.0 | -5.23 | 0.49 | 0.76 | 3.75 | 3.7 | 0.005 | 0.90 | 0.0 | 0.04 | 18.94 | 0.00 | 2.214 | 16.77 | 0.68 | 10.4 | 89.6 | 0.0 | -5.19 | 1.68 | 0.52 | 0.79 | 2.83 | 4310 | 600 | 20 | 0 | 0 | 0 | 0 | logfile |
✔ | 7D45 | 30570 | 2023-02-26 | 2020-09-22 | 3.8 | 3.90 | — | 3.9 | 0.009 | 0.92 | 0.0 | 0.05 | 15.23 | 0.00 | 2.082 | 19.88 | 0.35 | 16.6 | 83.1 | 0.2 | -4.81 | 0.79 | 0.80 | 1.51 | 3.8 | 0.004 | 0.69 | 0.0 | 0.05 | 16.54 | 0.00 | 2.083 | 14.85 | 0.39 | 8.2 | 91.7 | 0.1 | -1.74 | 1.57 | 0.78 | 0.78 | 1.20 | 27529 | 3659 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TMo | 25997 | 2023-02-28 | 2022-01-19 | 3.3 | 3.50 | — | 3.4 | 0.003 | 0.51 | 0.0 | 0.04 | 12.33 | 0.00 | 1.942 | 8.59 | 0.18 | 2.9 | 97.1 | 0.0 | 1.41 | 0.77 | 0.82 | 3.41 | 3.4 | 0.003 | 0.52 | 0.0 | 0.04 | 13.91 | 0.00 | 1.921 | 8.61 | 0.63 | 3.0 | 97.0 | 0.0 | 1.32 | 1.08 | 0.79 | 0.85 | 3.12 | 31559 | 4816 | 17 | 0 | 4 | 0 | 0 | logfile |
✔ | 7EoU | 31231 | 2023-02-25 | 2021-04-22 | 4.3 | 4.50 | — | 4.2 | 0.002 | 0.43 | 0.0 | 0.04 | 8.92 | 0.00 | 2.243 | 9.12 | 1.92 | 3.9 | 96.0 | 0.1 | 0.78 | 0.86 | 0.73 | — | 4.2 | 0.002 | 0.60 | 0.0 | 0.04 | 11.17 | 0.00 | 2.074 | 13.71 | 0.00 | 5.3 | 94.6 | 0.1 | -0.18 | 1.64 | 0.89 | 0.79 | — | 24593 | 3084 | 8 | 0 | 19 | 0 | 0 | logfile |
✔ | 6DJM | 7936 | 2023-02-20 | 2018-05-25 | 3.1 | 3.26 | — | 3.2 | 0.010 | 1.01 | 0.0 | 0.06 | 10.99 | 0.01 | 2.069 | 3.69 | 0.00 | 4.2 | 95.8 | 0.0 | -4.16 | 0.67 | 0.84 | 3.65 | 3.2 | 0.004 | 0.59 | 0.0 | 0.04 | 15.31 | 0.00 | 1.924 | 8.10 | 0.16 | 5.0 | 95.0 | 0.0 | -0.58 | 1.26 | 0.68 | 0.86 | 3.03 | 11768 | 1488 | 12 | 0 | 8 | 4 | 0 | logfile |
✔ | 6TBU | 10452 | 2023-02-21 | 2019-11-04 | 3.16 | 3.52 | — | 3.4 | 0.012 | 1.50 | 0.0 | 0.18 | 15.74 | 0.00 | 1.526 | 5.99 | 0.00 | 5.0 | 94.9 | 0.1 | -1.99 | 0.72 | 0.80 | 3.61 | 3.4 | 0.004 | 0.73 | 0.0 | 0.15 | 16.62 | 0.00 | 2.048 | 12.18 | 0.68 | 5.1 | 94.9 | 0.0 | 1.36 | 0.83 | 0.70 | 0.84 | 3.16 | 13733 | 842 | 3 | 0 | 12 | 0 | 6645 | logfile |
✔ | 7R15 | 14231 | 2023-02-24 | 2022-02-02 | 4.1 | 4.52 | 4.27 | 4.3 | 0.004 | 0.53 | 0.0 | 0.04 | 13.81 | 0.00 | 2.099 | 11.10 | 0.00 | 6.2 | 93.8 | 0.0 | -0.90 | 0.86 | 0.84 | — | 4.3 | 0.003 | 0.56 | 0.0 | 0.04 | 14.10 | 0.00 | 2.141 | 11.06 | 0.08 | 4.9 | 95.1 | 0.0 | -0.81 | 0.35 | 0.85 | 0.83 | — | 24100 | 3000 | 9 | 0 | 43 | 0 | 0 | logfile |
✔ | 7B8P | 12088 | 2023-02-24 | 2020-12-13 | 3.54 | 3.61 | — | 3.6 | 0.006 | 0.97 | 0.0 | 0.05 | 14.54 | 0.01 | 2.425 | 4.36 | 0.75 | 4.5 | 95.5 | 0.0 | -2.81 | 0.76 | 0.84 | 1.65 | 3.6 | 0.003 | 0.62 | 0.0 | 0.04 | 15.95 | 0.00 | 2.104 | 9.65 | 0.20 | 3.1 | 96.9 | 0.0 | 1.23 | 0.57 | 0.74 | 0.83 | 1.82 | 23202 | 3045 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ADU | 15370 | 2023-02-17 | 2022-07-11 | 3.24 | 2.85 | 2.78 | 3.3 | 0.007 | 0.82 | 0.0 | 0.07 | 15.52 | 0.00 | 2.296 | 20.22 | 0.00 | 11.3 | 88.7 | 0.0 | -4.91 | 0.52 | 0.82 | 3.23 | 3.3 | 0.006 | 0.77 | 0.0 | 0.05 | 17.58 | 0.00 | 2.306 | 16.01 | 2.61 | 12.8 | 87.2 | 0.0 | -4.37 | 2.39 | 0.48 | 0.82 | 3.07 | 3460 | 495 | 5 | 0 | 0 | 0 | 0 | logfile |