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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7oG6 | 12879 | 2023-02-16 | 2021-05-06 | 3.3 | 3.47 | — | 2.9 | 0.008 | 0.82 | 0.0 | 0.04 | 17.33 | 0.01 | 2.325 | 7.36 | 6.10 | 9.6 | 90.4 | 0.0 | -4.47 | 0.28 | 0.82 | 2.77 | 2.9 | 0.003 | 0.60 | 0.0 | 0.04 | 16.45 | 0.00 | 2.215 | 10.56 | 0.00 | 6.6 | 93.4 | 0.0 | -0.32 | 0.52 | 0.27 | 0.84 | 3.03 | 1602 | 199 | 2 | 5 | 0 | 0 | 0 | logfile |
✔ | 6L4S | 0833 | 2023-02-16 | 2019-10-21 | 3.37 | 3.47 | — | 4.0 | 0.014 | 1.36 | 0.0 | 0.09 | 10.28 | 0.01 | 2.408 | 7.28 | 0.00 | 5.7 | 94.3 | 0.0 | -3.73 | 0.28 | 0.67 | 4.12 | 4.1 | 0.008 | 0.87 | 0.0 | 0.06 | 15.84 | 0.00 | 2.228 | 13.92 | 1.32 | 14.8 | 85.2 | 0.0 | -3.58 | 3.14 | 0.35 | 0.74 | 2.44 | 2268 | 330 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UiU | 26553 | 2023-02-16 | 2022-03-29 | 2.8 | 3.11 | 2.72 | 3.1 | 0.004 | 0.62 | 0.0 | 0.04 | 13.60 | 0.00 | 2.356 | 3.35 | 0.00 | 4.8 | 95.2 | 0.0 | -2.09 | 0.28 | 0.82 | 1.99 | 3.1 | 0.004 | 0.96 | 0.0 | 0.04 | 17.04 | 0.00 | 2.228 | 11.74 | 1.67 | 4.8 | 95.2 | 0.0 | -2.17 | 1.37 | 0.28 | 0.89 | 2.33 | 607 | 85 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8FD5 | 29002 | 2023-02-17 | 2022-12-02 | 4.57 | 4.19 | — | 10.0 | 0.016 | 2.15 | 4.0 | 0.13 | 13.14 | 0.02 | 2.541 | 0.16 | 0.29 | 3.8 | 96.2 | 0.0 | -1.38 | 0.28 | 0.02 | — | 3.5 | 0.004 | 0.81 | 0.0 | 0.04 | 13.27 | 0.01 | 2.112 | 15.37 | 0.00 | 6.2 | 93.8 | 0.0 | -1.75 | 1.59 | 0.40 | 0.17 | — | 3214 | 419 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ABK | 11698 | 2023-02-16 | 2020-09-07 | 3.6 | 4.10 | 3.49 | 3.9 | 0.004 | 0.66 | 0.0 | 0.04 | 16.30 | 0.00 | 2.315 | 5.67 | 1.23 | 1.5 | 98.5 | 0.0 | 0.91 | 0.28 | 0.87 | 1.10 | 3.9 | 0.004 | 0.67 | 0.0 | 0.03 | 19.79 | 0.00 | 2.278 | 6.30 | 2.47 | 2.1 | 97.9 | 0.0 | 4.42 | 1.32 | 0.28 | 0.86 | 1.35 | 1574 | 196 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6K32 | 9907 | 2023-02-23 | 2019-05-16 | 3.2 | 3.73 | — | 3.8 | 0.009 | 1.22 | 1.0 | 0.07 | 11.49 | 0.01 | 1.345 | 10.20 | 1.25 | 6.3 | 93.3 | 0.3 | -4.88 | 0.28 | 0.72 | 1.49 | 3.7 | 0.005 | 0.80 | 0.0 | 0.05 | 16.31 | 0.00 | 1.315 | 12.68 | 0.61 | 5.9 | 94.1 | 0.1 | -1.36 | 1.63 | 0.31 | 0.82 | 2.34 | 61364 | 7723 | 10 | 8 | 6 | 0 | 0 | logfile |
✔ | 8D9N | 27267 | 2023-02-18 | 2022-06-10 | 4.4 | 4.74 | 3.88 | 34.0 | 0.003 | 0.60 | 0.0 | 0.04 | 13.21 | 0.00 | 2.107 | 2.77 | 0.38 | 5.8 | 94.2 | 0.0 | -0.81 | 0.28 | -0.07 | — | 20.0 | 0.002 | 0.66 | 0.0 | 0.04 | 13.34 | 0.00 | 2.212 | 4.39 | 0.00 | 4.6 | 95.4 | 0.0 | 0.37 | 0.56 | 0.40 | -0.02 | — | 7186 | 902 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6H5i | 0140 | 2023-02-21 | 2018-07-24 | 3.9 | 3.87 | — | 23.0 | 0.006 | 0.81 | 0.0 | 0.05 | 10.47 | 0.01 | 2.196 | 2.64 | 0.17 | 4.3 | 95.7 | 0.0 | -1.74 | 0.29 | 0.06 | 0.15 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 15.36 | 0.00 | 2.097 | 14.22 | 0.32 | 4.1 | 95.9 | 0.0 | 1.46 | 1.26 | 0.37 | 0.24 | 0.27 | 43900 | 5392 | 26 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XMX | 33307 | 2023-02-26 | 2022-04-27 | 3.62 | 3.63 | 3.44 | 22.0 | 0.011 | 1.29 | 7.0 | 0.09 | 12.50 | 0.01 | 1.407 | 4.82 | 1.34 | 6.6 | 93.3 | 0.1 | -0.95 | 0.29 | 0.01 | 0.23 | 20.0 | 0.003 | 0.68 | 0.0 | 0.04 | 14.28 | 0.00 | 2.027 | 11.86 | 0.35 | 5.9 | 94.0 | 0.1 | -1.06 | 1.13 | 0.36 | 0.17 | 0.19 | 28727 | 3700 | 12 | 0 | 24 | 0 | 0 | logfile |
✔ | 7U11 | 26274 | 2023-02-17 | 2022-02-19 | 3.2 | 2.77 | — | 3.4 | 0.004 | 0.67 | 0.0 | 0.06 | 16.16 | 0.00 | 2.186 | 14.68 | 2.36 | 6.0 | 94.0 | 0.0 | -2.79 | 0.29 | 0.64 | 3.31 | 3.4 | 0.005 | 0.78 | 0.0 | 0.06 | 17.42 | 0.00 | 2.051 | 11.19 | 0.26 | 10.0 | 90.0 | 0.0 | -3.34 | 0.76 | 0.30 | 0.68 | 3.39 | 3456 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 8GWB | 34308 | 2023-02-24 | 2022-09-16 | 2.75 | 2.95 | 2.85 | 25.0 | 0.009 | 1.07 | 1.0 | 0.05 | 16.02 | 0.01 | 1.556 | 16.84 | 2.25 | 7.5 | 92.3 | 0.2 | -2.40 | 0.29 | 0.01 | 0.23 | 25.0 | 0.003 | 0.74 | 0.0 | 0.04 | 16.77 | 0.00 | 2.117 | 17.29 | 2.69 | 7.5 | 92.4 | 0.1 | -1.54 | 1.60 | 0.34 | 0.15 | 0.46 | 21879 | 2655 | 16 | 54 | 10 | 7 | 0 | logfile |
✔ | 7M3L | 23656 | 2023-02-17 | 2021-03-18 | 3.2 | 4.99 | — | 3.3 | 0.009 | 0.97 | 0.0 | 0.06 | 15.05 | 0.01 | 1.551 | 6.78 | 0.30 | 9.1 | 90.6 | 0.3 | -3.19 | 0.29 | 0.38 | 0.40 | 3.1 | 0.004 | 0.72 | 0.0 | 0.04 | 15.15 | 0.00 | 2.043 | 15.39 | 0.30 | 7.0 | 92.8 | 0.1 | -0.73 | 3.83 | 0.46 | 0.76 | 1.89 | 6113 | 775 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7U16 | 26279 | 2023-02-17 | 2022-02-19 | 2.7 | 3.30 | — | 3.5 | 0.003 | 0.55 | 0.0 | 0.05 | 14.72 | 0.00 | 2.310 | 8.58 | 0.00 | 6.8 | 93.2 | 0.0 | -2.67 | 0.29 | 0.68 | 2.62 | 3.5 | 0.003 | 0.52 | 0.0 | 0.05 | 16.66 | 0.00 | 2.142 | 7.27 | 1.57 | 4.8 | 95.2 | 0.0 | -2.57 | 1.73 | 0.36 | 0.80 | 5.18 | 3456 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 7U12 | 26275 | 2023-02-17 | 2022-02-19 | 3.5 | 3.59 | — | 4.4 | 0.011 | 1.02 | 0.0 | 0.07 | 16.79 | 0.01 | 2.160 | 20.06 | 5.51 | 8.0 | 92.0 | 0.0 | -3.00 | 0.29 | 0.45 | 2.77 | 4.3 | 0.005 | 0.91 | 0.0 | 0.06 | 15.76 | 0.00 | 2.056 | 17.29 | 0.26 | 11.8 | 88.2 | 0.0 | -3.89 | 2.91 | 0.34 | 0.57 | 2.15 | 3456 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 7WHP | 32507 | 2023-02-22 | 2021-12-31 | 3.7 | 3.28 | — | 3.3 | 0.004 | 0.62 | 0.0 | 0.04 | 14.19 | 0.01 | 2.209 | 8.40 | 0.00 | 2.9 | 97.0 | 0.0 | -0.85 | 0.30 | 0.77 | 2.67 | 3.3 | 0.004 | 0.60 | 0.0 | 0.05 | 16.37 | 0.00 | 2.068 | 9.96 | 0.37 | 4.2 | 95.7 | 0.0 | -0.75 | 1.54 | 0.30 | 0.78 | 2.57 | 17038 | 2114 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 7QL2 | 14061 | 2023-02-16 | 2021-12-19 | 2.95 | 2.96 | 2.65 | 3.1 | 0.010 | 2.11 | 2.0 | 0.11 | 10.98 | 0.01 | 2.674 | 0.00 | 0.00 | 7.6 | 92.4 | 0.0 | -2.82 | 0.30 | 0.74 | 4.50 | 3.5 | 0.003 | 0.58 | 0.0 | 0.05 | 12.52 | 0.00 | 2.497 | 2.63 | 1.48 | 8.3 | 91.7 | 0.0 | -3.27 | 1.13 | 0.22 | 0.72 | 4.36 | 2286 | 150 | 3 | 0 | 0 | 0 | 1179 | logfile |
✔ | 7U13 | 26276 | 2023-02-17 | 2022-02-19 | 2.9 | 3.67 | — | 4.2 | 0.017 | 2.41 | 0.0 | 0.07 | 17.78 | 0.01 | 2.120 | 29.95 | 6.30 | 11.3 | 88.0 | 0.8 | -3.06 | 0.30 | 0.47 | 1.37 | 4.2 | 0.005 | 0.96 | 0.0 | 0.06 | 18.45 | 0.00 | 2.194 | 14.61 | 3.67 | 12.3 | 87.7 | 0.0 | -4.21 | 6.72 | 0.33 | 0.56 | 1.63 | 3456 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 7P3R | 13185 | 2023-02-18 | 2021-07-08 | 3.65 | 3.16 | 3.57 | 3.5 | 0.006 | 0.81 | 1.0 | 0.05 | 13.66 | 0.01 | 2.306 | 1.88 | 0.28 | 2.7 | 97.3 | 0.0 | -3.67 | 0.30 | 0.70 | 1.05 | 3.5 | 0.004 | 0.59 | 0.0 | 0.04 | 14.62 | 0.00 | 2.160 | 5.04 | 0.28 | 2.3 | 97.7 | 0.0 | 3.53 | 0.58 | 0.29 | 0.64 | 1.05 | 7738 | 1338 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VZF | 32227 | 2023-02-16 | 2021-11-16 | 2.95 | 2.71 | — | 3.0 | 0.009 | 1.06 | 0.0 | 0.06 | 16.23 | 0.01 | 1.971 | 38.45 | 0.00 | 26.5 | 73.5 | 0.0 | -5.56 | 0.30 | 0.43 | -0.13 | 2.8 | 0.005 | 0.93 | 0.0 | 0.05 | 18.70 | 0.00 | 2.192 | 14.23 | 5.32 | 20.2 | 79.8 | 0.0 | -4.30 | 1.92 | 0.37 | 0.63 | -0.01 | 2628 | 363 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7U14 | 26277 | 2023-02-17 | 2022-02-19 | 4.5 | 4.22 | — | 4.6 | 0.006 | 0.90 | 0.0 | 0.06 | 18.13 | 0.00 | 2.369 | 21.08 | 6.30 | 10.5 | 89.5 | 0.0 | -3.07 | 0.30 | 0.52 | — | 4.4 | 0.005 | 0.89 | 0.0 | 0.06 | 15.63 | 0.00 | 2.096 | 17.01 | 0.00 | 12.5 | 87.5 | 0.0 | -4.13 | 1.60 | 0.34 | 0.62 | — | 3456 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |