Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oG6	12879	2023-02-16	2021-05-06	3.3	3.47	—	2.9	0.008	0.82	0.0	0.04	17.33	0.01	2.325	7.36	6.10	9.6	90.4	0.0	-4.47	0.28	0.82	2.77	2.9	0.003	0.60	0.0	0.04	16.45	0.00	2.215	10.56	0.00	6.6	93.4	0.0	-0.32	0.52	0.27	0.84	3.03	1602	199	2	5	0	0	0	logfile
✔	6L4S	0833	2023-02-16	2019-10-21	3.37	3.47	—	4.0	0.014	1.36	0.0	0.09	10.28	0.01	2.408	7.28	0.00	5.7	94.3	0.0	-3.73	0.28	0.67	4.12	4.1	0.008	0.87	0.0	0.06	15.84	0.00	2.228	13.92	1.32	14.8	85.2	0.0	-3.58	3.14	0.35	0.74	2.44	2268	330	6	0	0	0	0	logfile
✔	7UiU	26553	2023-02-16	2022-03-29	2.8	3.11	2.72	3.1	0.004	0.62	0.0	0.04	13.60	0.00	2.356	3.35	0.00	4.8	95.2	0.0	-2.09	0.28	0.82	1.99	3.1	0.004	0.96	0.0	0.04	17.04	0.00	2.228	11.74	1.67	4.8	95.2	0.0	-2.17	1.37	0.28	0.89	2.33	607	85	1	0	0	0	0	logfile
✔	8FD5	29002	2023-02-17	2022-12-02	4.57	4.19	—	10.0	0.016	2.15	4.0	0.13	13.14	0.02	2.541	0.16	0.29	3.8	96.2	0.0	-1.38	0.28	0.02	—	3.5	0.004	0.81	0.0	0.04	13.27	0.01	2.112	15.37	0.00	6.2	93.8	0.0	-1.75	1.59	0.40	0.17	—	3214	419	1	0	0	0	0	logfile
✔	7ABK	11698	2023-02-16	2020-09-07	3.6	4.10	3.49	3.9	0.004	0.66	0.0	0.04	16.30	0.00	2.315	5.67	1.23	1.5	98.5	0.0	0.91	0.28	0.87	1.10	3.9	0.004	0.67	0.0	0.03	19.79	0.00	2.278	6.30	2.47	2.1	97.9	0.0	4.42	1.32	0.28	0.86	1.35	1574	196	1	0	0	0	0	logfile
✔	6K32	9907	2023-02-23	2019-05-16	3.2	3.73	—	3.8	0.009	1.22	1.0	0.07	11.49	0.01	1.345	10.20	1.25	6.3	93.3	0.3	-4.88	0.28	0.72	1.49	3.7	0.005	0.80	0.0	0.05	16.31	0.00	1.315	12.68	0.61	5.9	94.1	0.1	-1.36	1.63	0.31	0.82	2.34	61364	7723	10	8	6	0	0	logfile
✔	8D9N	27267	2023-02-18	2022-06-10	4.4	4.74	3.88	34.0	0.003	0.60	0.0	0.04	13.21	0.00	2.107	2.77	0.38	5.8	94.2	0.0	-0.81	0.28	-0.07	—	20.0	0.002	0.66	0.0	0.04	13.34	0.00	2.212	4.39	0.00	4.6	95.4	0.0	0.37	0.56	0.40	-0.02	—	7186	902	2	0	0	0	0	logfile
✔	6H5i	0140	2023-02-21	2018-07-24	3.9	3.87	—	23.0	0.006	0.81	0.0	0.05	10.47	0.01	2.196	2.64	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.7	0.003	0.67	0.0	0.04	15.36	0.00	2.097	14.22	0.32	4.1	95.9	0.0	1.46	1.26	0.37	0.24	0.27	43900	5392	26	0	0	0	0	logfile
✔	7XMX	33307	2023-02-26	2022-04-27	3.62	3.63	3.44	22.0	0.011	1.29	7.0	0.09	12.50	0.01	1.407	4.82	1.34	6.6	93.3	0.1	-0.95	0.29	0.01	0.23	20.0	0.003	0.68	0.0	0.04	14.28	0.00	2.027	11.86	0.35	5.9	94.0	0.1	-1.06	1.13	0.36	0.17	0.19	28727	3700	12	0	24	0	0	logfile
✔	7U11	26274	2023-02-17	2022-02-19	3.2	2.77	—	3.4	0.004	0.67	0.0	0.06	16.16	0.00	2.186	14.68	2.36	6.0	94.0	0.0	-2.79	0.29	0.64	3.31	3.4	0.005	0.78	0.0	0.06	17.42	0.00	2.051	11.19	0.26	10.0	90.0	0.0	-3.34	0.76	0.30	0.68	3.39	3456	405	6	0	12	0	0	logfile
✔	8GWB	34308	2023-02-24	2022-09-16	2.75	2.95	2.85	25.0	0.009	1.07	1.0	0.05	16.02	0.01	1.556	16.84	2.25	7.5	92.3	0.2	-2.40	0.29	0.01	0.23	25.0	0.003	0.74	0.0	0.04	16.77	0.00	2.117	17.29	2.69	7.5	92.4	0.1	-1.54	1.60	0.34	0.15	0.46	21879	2655	16	54	10	7	0	logfile
✔	7M3L	23656	2023-02-17	2021-03-18	3.2	4.99	—	3.3	0.009	0.97	0.0	0.06	15.05	0.01	1.551	6.78	0.30	9.1	90.6	0.3	-3.19	0.29	0.38	0.40	3.1	0.004	0.72	0.0	0.04	15.15	0.00	2.043	15.39	0.30	7.0	92.8	0.1	-0.73	3.83	0.46	0.76	1.89	6113	775	3	0	0	0	0	logfile
✔	7U16	26279	2023-02-17	2022-02-19	2.7	3.30	—	3.5	0.003	0.55	0.0	0.05	14.72	0.00	2.310	8.58	0.00	6.8	93.2	0.0	-2.67	0.29	0.68	2.62	3.5	0.003	0.52	0.0	0.05	16.66	0.00	2.142	7.27	1.57	4.8	95.2	0.0	-2.57	1.73	0.36	0.80	5.18	3456	405	6	0	12	0	0	logfile
✔	7U12	26275	2023-02-17	2022-02-19	3.5	3.59	—	4.4	0.011	1.02	0.0	0.07	16.79	0.01	2.160	20.06	5.51	8.0	92.0	0.0	-3.00	0.29	0.45	2.77	4.3	0.005	0.91	0.0	0.06	15.76	0.00	2.056	17.29	0.26	11.8	88.2	0.0	-3.89	2.91	0.34	0.57	2.15	3456	405	6	0	12	0	0	logfile
✔	7WHP	32507	2023-02-22	2021-12-31	3.7	3.28	—	3.3	0.004	0.62	0.0	0.04	14.19	0.01	2.209	8.40	0.00	2.9	97.0	0.0	-0.85	0.30	0.77	2.67	3.3	0.004	0.60	0.0	0.05	16.37	0.00	2.068	9.96	0.37	4.2	95.7	0.0	-0.75	1.54	0.30	0.78	2.57	17038	2114	4	0	6	0	0	logfile
✔	7QL2	14061	2023-02-16	2021-12-19	2.95	2.96	2.65	3.1	0.010	2.11	2.0	0.11	10.98	0.01	2.674	0.00	0.00	7.6	92.4	0.0	-2.82	0.30	0.74	4.50	3.5	0.003	0.58	0.0	0.05	12.52	0.00	2.497	2.63	1.48	8.3	91.7	0.0	-3.27	1.13	0.22	0.72	4.36	2286	150	3	0	0	0	1179	logfile
✔	7U13	26276	2023-02-17	2022-02-19	2.9	3.67	—	4.2	0.017	2.41	0.0	0.07	17.78	0.01	2.120	29.95	6.30	11.3	88.0	0.8	-3.06	0.30	0.47	1.37	4.2	0.005	0.96	0.0	0.06	18.45	0.00	2.194	14.61	3.67	12.3	87.7	0.0	-4.21	6.72	0.33	0.56	1.63	3456	405	6	0	12	0	0	logfile
✔	7P3R	13185	2023-02-18	2021-07-08	3.65	3.16	3.57	3.5	0.006	0.81	1.0	0.05	13.66	0.01	2.306	1.88	0.28	2.7	97.3	0.0	-3.67	0.30	0.70	1.05	3.5	0.004	0.59	0.0	0.04	14.62	0.00	2.160	5.04	0.28	2.3	97.7	0.0	3.53	0.58	0.29	0.64	1.05	7738	1338	4	0	0	0	0	logfile
✔	7VZF	32227	2023-02-16	2021-11-16	2.95	2.71	—	3.0	0.009	1.06	0.0	0.06	16.23	0.01	1.971	38.45	0.00	26.5	73.5	0.0	-5.56	0.30	0.43	-0.13	2.8	0.005	0.93	0.0	0.05	18.70	0.00	2.192	14.23	5.32	20.2	79.8	0.0	-4.30	1.92	0.37	0.63	-0.01	2628	363	3	0	0	0	0	logfile
✔	7U14	26277	2023-02-17	2022-02-19	4.5	4.22	—	4.6	0.006	0.90	0.0	0.06	18.13	0.00	2.369	21.08	6.30	10.5	89.5	0.0	-3.07	0.30	0.52	—	4.4	0.005	0.89	0.0	0.06	15.63	0.00	2.096	17.01	0.00	12.5	87.5	0.0	-4.13	1.60	0.34	0.62	—	3456	405	6	0	12	0	0	logfile

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