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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8UPT | 42455 | 2024-03-10 | 2023-10-23 | 2.8 | 3.38 | 2.84 | 2.9 | 0.016 | 2.20 | 0.0 | 0.16 | 30.45 | 0.01 | 1.072 | 99.56 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.23 | 0.59 | — | 2.9 | 0.005 | 0.73 | 0.0 | 0.04 | 27.91 | 0.01 | 2.113 | 22.27 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.95 | 0.28 | 0.87 | — | 1518 | 0 | 1 | 71 | 0 | 0 | 0 | logfile |
✔ | 7QWS | 14193 | 2024-03-18 | 2022-01-25 | 3.4 | 3.09 | — | 7.2 | 0.002 | 0.46 | 0.0 | 0.03 | 22.90 | 0.00 | 2.011 | 9.44 | 1.65 | 3.7 | 96.3 | 0.0 | 0.47 | 0.23 | 0.02 | -0.02 | 3.0 | 0.004 | 0.88 | 0.0 | 0.04 | 24.72 | 0.01 | 0.987 | 26.15 | 2.43 | 8.3 | 91.7 | 0.1 | -2.38 | 2.16 | 0.52 | 0.59 | 0.52 | 137913 | 7047 | 55 | 3769 | 126 | 0 | 0 | logfile |
✔ | 7KU5 | 23034 | 2024-03-10 | 2020-11-24 | 3.76 | 3.63 | — | 3.9 | 0.006 | 1.29 | 0.0 | 0.07 | 14.85 | 0.01 | 2.420 | 3.63 | 0.00 | 12.8 | 87.2 | 0.0 | -5.41 | 0.23 | 0.65 | -0.48 | 3.9 | 0.002 | 0.76 | 0.0 | 0.05 | 15.78 | 0.01 | 2.246 | 8.71 | 5.00 | 12.8 | 87.2 | 0.0 | -1.24 | 1.17 | 0.25 | 0.69 | 2.46 | 750 | 88 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 8TiF | 41286 | 2024-03-10 | 2023-07-19 | 3.89 | 3.95 | 3.71 | 4.1 | 0.005 | 0.55 | 0.0 | 0.04 | 17.04 | 0.00 | 2.317 | 8.78 | 1.02 | 1.6 | 98.4 | 0.0 | 0.15 | 0.23 | 0.85 | 1.30 | 4.1 | 0.002 | 0.42 | 0.0 | 0.04 | 16.97 | 0.00 | 2.337 | 4.94 | 2.04 | 1.6 | 98.4 | 0.0 | 0.98 | 0.36 | 0.22 | 0.85 | 3.19 | 889 | 131 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5FN1 | 3236 | 2024-03-12 | 2015-11-10 | 3.9 | 4.00 | — | 4.7 | 0.009 | 1.18 | 0.0 | 0.07 | 12.98 | 0.00 | 0.877 | 53.81 | 0.00 | 8.8 | 88.4 | 2.8 | -3.37 | 0.24 | 0.29 | 0.57 | 4.0 | 0.005 | 0.96 | 2.0 | 0.04 | 17.65 | 0.01 | 1.782 | 22.59 | 2.79 | 10.8 | 88.1 | 1.1 | -0.99 | 2.12 | 0.40 | 0.74 | 1.09 | 61308 | 3906 | 36 | 90 | 0 | 0 | 30078 | logfile |
✔ | 5Li4 | 4052 | 2024-03-18 | 2016-07-14 | 4.2 | 5.13 | — | 4.0 | 0.053 | 3.07 | 114.0 | 0.34 | 14.44 | 0.02 | 0.111 | 93.07 | 2.94 | 14.0 | 79.1 | 6.9 | -4.32 | 0.24 | 0.30 | — | 4.1 | 0.005 | 1.06 | 2.0 | 0.05 | 13.91 | 0.01 | 2.083 | 35.87 | 0.00 | 16.6 | 82.5 | 0.9 | -3.94 | 4.20 | 0.34 | 0.59 | — | 20070 | 2562 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LiV | 23386 | 2024-03-25 | 2021-01-28 | 3.6 | 3.63 | — | 3.6 | 0.009 | 0.95 | 1.0 | 0.05 | 13.49 | 0.01 | 1.080 | 26.90 | 2.97 | 4.9 | 94.5 | 0.6 | -3.03 | 0.24 | 0.49 | 0.16 | 3.7 | 0.004 | 0.82 | 1.0 | 0.04 | 17.08 | 0.00 | 1.707 | 15.62 | 3.09 | 4.6 | 95.4 | 0.1 | -0.69 | 1.63 | 0.39 | 0.80 | 1.13 | 47058 | 5903 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8Q9G | 18280 | 2024-03-11 | 2023-08-20 | 2.65 | 1.99 | 2.52 | 2.2 | 0.011 | 1.95 | 0.0 | 0.09 | 10.25 | 0.01 | 2.554 | 0.00 | 0.00 | 1.6 | 98.4 | 0.0 | -1.98 | 0.25 | 0.66 | 6.26 | 2.2 | 0.003 | 0.57 | 0.0 | 0.05 | 16.34 | 0.00 | 2.084 | 3.08 | 1.82 | 1.4 | 98.6 | 0.0 | -2.01 | 1.21 | 0.34 | 0.84 | 6.52 | 6822 | 438 | 6 | 0 | 0 | 0 | 3480 | logfile |
✔ | 8oLQ | 16961 | 2024-03-10 | 2023-03-30 | 4.0 | 3.17 | 3.52 | 3.7 | 0.003 | 0.49 | 0.0 | 0.05 | 7.64 | 0.00 | 2.207 | 3.69 | 0.00 | 0.0 | 100.0 | 0.0 | -0.52 | 0.25 | 0.70 | — | 3.4 | 0.002 | 0.47 | 0.0 | 0.05 | 13.94 | 0.00 | 2.277 | 7.79 | 2.40 | 4.7 | 95.3 | 0.0 | -1.51 | 1.42 | 0.24 | 0.70 | — | 2445 | 160 | 5 | 0 | 0 | 0 | 1185 | logfile |
✔ | 8oLG | 16957 | 2024-03-10 | 2023-03-30 | 4.2 | 3.16 | 3.54 | 4.2 | 0.002 | 0.41 | 0.0 | 0.05 | 9.55 | 0.00 | 2.261 | 9.57 | 0.00 | 13.5 | 86.5 | 0.0 | -4.82 | 0.25 | 0.63 | — | 4.2 | 0.004 | 0.80 | 0.0 | 0.05 | 15.39 | 0.00 | 2.337 | 19.49 | 0.00 | 19.5 | 80.5 | 0.0 | -4.20 | 1.59 | 0.29 | 0.65 | — | 1490 | 195 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8G5V | 29756 | 2024-03-16 | 2023-02-14 | 3.0 | 2.99 | 4.36 | 3.8 | 0.004 | 0.61 | 0.0 | 0.04 | 12.94 | 0.01 | 2.223 | 7.63 | 0.00 | 2.9 | 97.1 | 0.0 | 2.14 | 0.25 | 0.24 | 0.28 | 3.1 | 0.003 | 0.71 | 0.0 | 0.04 | 16.64 | 0.00 | 2.135 | 10.60 | 1.18 | 2.2 | 97.8 | 0.0 | 1.75 | 2.94 | 0.46 | 0.75 | 1.98 | 13739 | 1718 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8Q9E | 18278 | 2024-03-11 | 2023-08-20 | 2.97 | 2.51 | 2.93 | 2.7 | 0.011 | 1.89 | 2.0 | 0.11 | 11.77 | 0.01 | 2.528 | 0.59 | 1.32 | 1.9 | 98.1 | 0.0 | -1.47 | 0.25 | 0.73 | 5.90 | 2.7 | 0.002 | 0.57 | 0.0 | 0.05 | 16.68 | 0.01 | 2.249 | 3.25 | 0.53 | 1.2 | 98.8 | 0.0 | -1.41 | 1.29 | 0.35 | 0.83 | 4.43 | 6768 | 432 | 6 | 0 | 0 | 0 | 3456 | logfile |
✘ | 6RBE | 4794 | 2024-03-16 | 2019-04-10 | 3.8 | 4.03 | 3.73 | 40.0 | 0.007 | 1.27 | 0.0 | 0.06 | 23.46 | 0.01 | 2.076 | 9.10 | 1.35 | 11.9 | 86.8 | 1.2 | -4.17 | 0.25 | 0.02 | 0.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72721 | 4512 | 33 | 1750 | 0 | 0 | 0 | logfile |
✔ | 8FVG | 29486 | 2024-03-25 | 2023-01-18 | 3.1 | 2.34 | 3.16 | 3.2 | 0.004 | 0.66 | 0.0 | 0.05 | 14.20 | 0.00 | 2.106 | 8.55 | 0.00 | 5.7 | 94.3 | 0.0 | -0.63 | 0.26 | 0.75 | 2.01 | 3.1 | 0.019 | 0.86 | 0.0 | 0.05 | 16.32 | 0.01 | 2.109 | 8.32 | 3.97 | 7.5 | 92.5 | 0.0 | -0.66 | 1.36 | 0.26 | 0.78 | 2.16 | 48009 | 6409 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 8A1S | 15086 | 2024-03-14 | 2022-06-02 | 4.0 | 3.83 | 3.95 | 37.0 | 0.008 | 0.74 | 0.0 | 0.05 | 14.73 | 0.00 | 1.988 | 10.18 | 0.97 | 3.9 | 96.0 | 0.2 | -0.24 | 0.26 | 0.00 | — | 3.8 | 0.005 | 0.94 | 1.0 | 0.05 | 13.34 | 0.01 | 2.007 | 21.22 | 1.97 | 6.6 | 93.2 | 0.2 | -1.51 | 1.68 | 0.34 | 0.23 | — | 67152 | 8528 | 32 | 0 | 32 | 0 | 0 | logfile |
✔ | 6X0U | 21984 | 2024-03-10 | 2020-05-17 | 3.6 | 3.62 | — | 3.6 | 0.004 | 0.62 | 0.0 | 0.04 | 14.50 | 0.00 | 2.277 | 5.74 | 0.00 | 3.7 | 96.1 | 0.3 | -5.79 | 0.26 | 0.78 | 1.89 | 3.6 | 0.002 | 0.66 | 0.0 | 0.03 | 17.85 | 0.00 | 2.198 | 6.54 | 2.34 | 3.2 | 96.8 | 0.0 | 1.40 | 0.77 | 0.27 | 0.78 | 2.51 | 3091 | 398 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7RMC | 24560 | 2024-03-28 | 2021-07-27 | 3.5 | 3.50 | — | 3.6 | 0.013 | 2.05 | 44.0 | 0.15 | 17.28 | 0.02 | 2.304 | 1.80 | 1.65 | 4.6 | 95.1 | 0.4 | -1.78 | 0.26 | 0.38 | 2.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 106824 | 6732 | 24 | 0 | 24 | 0 | 53244 | logfile |
✔ | 7QL4 | 14063 | 2024-03-11 | 2021-12-19 | 3.2 | 3.36 | 2.99 | 3.5 | 0.011 | 1.86 | 0.0 | 0.10 | 12.28 | 0.01 | 2.511 | 0.28 | 0.00 | 8.3 | 91.7 | 0.0 | -1.77 | 0.26 | 0.51 | 0.51 | 3.4 | 0.005 | 1.22 | 0.0 | 0.05 | 15.22 | 0.01 | 2.037 | 8.35 | 2.78 | 2.5 | 97.5 | 0.0 | -2.02 | 3.12 | 0.31 | 0.75 | 3.50 | 7074 | 456 | 6 | 0 | 0 | 0 | 3606 | logfile |
✔ | 8Q8Y | 18265 | 2024-03-11 | 2023-08-19 | 2.88 | 2.50 | 2.59 | 2.7 | 0.011 | 1.89 | 4.0 | 0.11 | 12.93 | 0.01 | 2.516 | 0.00 | 0.00 | 2.3 | 97.7 | 0.0 | -1.68 | 0.26 | 0.75 | 5.62 | 2.7 | 0.002 | 0.53 | 0.0 | 0.05 | 17.29 | 0.00 | 2.053 | 2.18 | 1.55 | 1.9 | 98.1 | 0.0 | -1.41 | 1.19 | 0.35 | 0.88 | 5.17 | 6896 | 441 | 6 | 0 | 0 | 0 | 3521 | logfile |
✔ | 6VHL | 21207 | 2024-03-10 | 2020-01-10 | 3.3 | 3.60 | — | 3.5 | 0.007 | 1.03 | 0.0 | 0.07 | 15.85 | 0.01 | 1.791 | 14.51 | 4.48 | 14.7 | 85.3 | 0.0 | -6.30 | 0.26 | 0.70 | 3.54 | 3.6 | 0.003 | 0.71 | 0.0 | 0.04 | 16.46 | 0.00 | 2.331 | 5.80 | 2.99 | 6.7 | 93.3 | 0.0 | -3.62 | 2.72 | 0.27 | 0.70 | 3.42 | 1190 | 158 | 4 | 0 | 0 | 0 | 0 | logfile |