Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6HD7	0202	2022-04-09	2018-08-17	3.4	3.54	—	3.3	0.002	0.43	0.0	0.03	14.93	0.00	0.345	24.95	0.08	11.1	87.1	1.9	-3.26	0.66	0.65	0.74	3.3	0.007	0.79	0.0	0.04	17.84	0.01	1.953	18.74	0.71	7.3	92.3	0.4	-1.37	1.56	0.76	0.87	1.70	141153	7514	52	3767	234	0	0	logfile
✔	3J9W	6306	2022-04-08	2015-03-16	3.9	3.93	—	3.8	0.010	1.50	0.0	0.03	15.63	0.02	1.433	8.85	0.26	6.0	92.0	2.0	-1.66	0.74	0.72	0.72	3.8	0.005	0.78	0.0	0.04	17.69	0.01	2.004	20.54	1.64	8.4	91.0	0.6	-0.70	1.35	0.80	0.85	1.39	135425	5661	54	4675	0	0	0	logfile
✔	7QV2	14158	2022-04-09	2022-01-19	3.5	3.59	—	3.2	0.002	0.48	0.0	0.03	15.58	0.00	1.833	5.98	0.25	4.7	95.2	0.1	-1.90	0.77	0.82	1.24	3.2	0.005	0.71	0.0	0.04	16.91	0.01	1.986	17.12	1.00	7.9	92.0	0.1	-1.33	3.66	0.78	0.86	1.22	142856	5268	53	4726	24	0	0	logfile
✔	7oLC	12976	2022-04-17	2021-05-19	2.9	3.43	—	3.2	0.003	0.45	0.0	0.03	14.06	0.01	1.848	4.35	0.04	4.4	95.6	0.0	-1.10	0.78	0.86	3.30	3.2	0.006	0.65	0.0	0.04	15.41	0.01	1.691	6.73	2.43	5.5	94.5	0.0	-0.70	0.32	0.81	0.88	2.82	207344	11862	127	5231	579	945	0	logfile
✔	7R81	24307	2022-04-16	2021-06-25	2.7	3.15	2.85	3.1	0.003	0.52	0.0	0.03	14.47	0.00	1.908	7.78	0.02	4.4	95.5	0.1	-0.20	0.78	0.84	3.14	3.1	0.007	0.68	0.0	0.04	15.69	0.01	1.757	8.63	1.99	4.9	95.0	0.1	0.20	1.10	0.74	0.83	2.76	202730	11133	91	5339	266	0	0	logfile
✘	7PiM	13442	2022-04-05	2021-08-20	4.6	5.02	5.18	4.6	0.002	0.41	0.0	0.03	8.31	0.00	1.900	45.46	0.67	2.0	98.0	0.0	2.23	0.81	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11844	1412	12	0	8	0	524	logfile
✔	7S1G	24800	2022-04-26	2021-09-02	2.48	3.04	—	2.9	0.004	0.38	0.0	0.03	14.28	0.01	1.320	3.75	0.80	2.4	97.6	0.1	1.41	0.75	0.86	3.21	2.9	0.003	0.57	0.0	0.03	15.33	0.01	1.808	5.74	2.12	3.5	96.5	0.1	0.64	0.89	0.76	0.88	3.18	240537	5661	66	4638	199	42	96399	logfile
✔	7PGS	13394	2022-04-06	2021-08-15	3.4	3.61	3.34	3.4	0.002	0.40	0.0	0.03	10.77	0.00	1.972	3.57	0.66	1.2	98.8	0.0	-0.33	0.80	0.79	2.03	3.4	0.004	0.57	0.0	0.04	13.25	0.00	1.886	6.31	0.16	4.0	95.9	0.0	1.36	0.74	0.82	0.81	1.49	67202	4210	2	0	1	0	33807	logfile
✔	7LS2	23501	2022-04-24	2021-02-17	3.1	3.64	3.30	3.5	0.006	0.56	0.0	0.03	13.86	0.02	1.971	7.70	1.16	2.6	97.3	0.0	0.82	0.74	0.84	1.94	3.4	0.007	0.85	0.0	0.04	16.84	0.01	1.801	20.93	1.37	5.0	95.0	0.0	-0.55	1.28	0.76	0.87	1.75	227130	12862	96	5782	8	4	0	logfile
✔	7S1H	24801	2022-04-26	2021-09-02	2.35	3.01	—	2.9	0.004	0.40	0.0	0.03	14.30	0.01	1.638	3.98	0.99	2.3	97.6	0.1	1.27	0.73	0.86	3.34	2.9	0.005	0.58	0.0	0.04	15.19	0.01	1.753	5.85	2.49	3.6	96.3	0.1	0.56	0.40	0.74	0.87	3.47	237870	5656	63	4556	209	37	95478	logfile
✔	7FHL	31586	2022-04-05	2021-07-29	3.1	3.71	—	3.6	0.002	0.55	0.0	0.03	12.50	0.00	2.150	6.83	0.00	1.2	98.8	0.0	1.13	0.70	0.81	1.99	3.6	0.003	0.58	0.0	0.04	14.73	0.00	2.130	8.74	0.34	2.1	97.9	0.0	2.16	0.46	0.70	0.83	1.72	11058	1326	6	0	28	0	0	logfile
✔	7oHW	12911	2022-04-11	2021-05-11	3.5	4.33	3.60	3.3	0.002	0.44	0.0	0.03	15.80	0.00	1.811	5.00	0.66	3.9	96.0	0.1	1.91	0.81	0.75	1.34	3.3	0.008	0.65	0.0	0.04	16.78	0.00	1.870	13.12	0.34	6.4	93.6	0.0	-0.09	0.88	0.82	0.81	1.53	171568	6824	41	1853	1	0	76920	logfile
✔	7oBR	12801	2022-04-11	2021-04-23	2.8	2.88	—	2.9	0.002	0.49	1.0	0.03	15.19	0.00	1.835	8.02	2.55	4.6	95.3	0.0	0.58	0.61	0.80	2.85	2.8	0.006	0.71	0.0	0.04	17.24	0.01	1.825	9.62	3.50	5.8	94.1	0.1	-0.01	1.18	0.63	0.83	3.05	146701	7484	60	4019	102	0	0	logfile
✔	6XKY	22229	2022-04-08	2020-06-27	3.2	3.13	3.17	3.2	0.006	0.55	0.0	0.03	10.04	0.00	1.588	4.66	0.48	1.5	98.5	0.0	2.67	0.52	0.87	2.05	3.2	0.004	0.49	0.0	0.03	14.28	0.00	2.145	4.55	0.33	1.9	98.1	0.0	3.67	0.50	0.53	0.89	1.91	38760	5420	20	0	0	0	0	logfile
✔	7oHV	12910	2022-04-16	2021-05-11	3.9	4.64	4.01	3.5	0.002	0.44	0.0	0.03	15.77	0.00	1.754	5.23	1.39	3.1	96.8	0.0	1.66	0.77	0.67	0.89	3.6	0.005	0.57	0.0	0.04	16.89	0.00	1.836	14.05	0.28	6.3	93.7	0.0	0.01	2.03	0.82	0.79	0.94	205079	7892	47	2361	1	0	91259	logfile
✔	7oHS	12907	2022-04-12	2021-05-11	4.38	5.02	4.50	3.0	0.002	0.43	0.0	0.03	16.21	0.00	1.856	5.71	0.76	4.0	96.0	0.0	1.20	0.77	0.69	—	3.1	0.006	0.62	0.0	0.04	16.74	0.00	1.744	16.94	0.00	7.5	92.5	0.0	-0.74	1.43	0.80	0.78	—	175937	6971	42	1909	2	0	78846	logfile
✔	7Sii	25142	2022-04-06	2021-10-14	3.45	3.63	—	3.6	0.007	0.91	0.0	0.03	13.16	0.00	2.220	5.25	2.21	2.9	97.1	0.0	2.94	0.64	0.79	2.61	3.6	0.005	0.56	0.0	0.04	15.27	0.00	2.069	7.24	0.28	3.7	96.3	0.0	2.49	0.52	0.65	0.82	1.84	20484	1286	8	0	4	0	10184	logfile
✔	7P1J	13162	2022-04-04	2021-07-01	3.04	4.02	2.96	4.0	0.002	0.48	0.0	0.03	8.89	0.00	2.305	5.96	2.29	3.5	96.5	0.0	2.14	0.65	0.71	0.64	4.0	0.013	1.57	0.0	0.05	14.60	0.00	2.181	23.02	0.57	6.0	94.0	0.0	0.85	1.42	0.66	0.73	0.37	6502	868	2	0	0	0	0	logfile
✔	7oBQ	12799	2022-04-05	2021-04-23	3.9	4.22	—	3.9	0.003	0.48	0.0	0.03	12.88	0.00	2.106	9.19	2.63	2.7	97.3	0.0	1.55	0.76	0.79	0.82	3.9	0.011	1.11	0.0	0.04	15.51	0.00	1.846	21.25	0.37	4.1	95.9	0.0	0.39	1.25	0.77	0.81	0.90	16668	1642	11	165	39	0	0	logfile
✔	7oHR	12906	2022-04-26	2021-05-11	4.72	4.88	4.81	2.8	0.005	0.46	2.0	0.03	16.12	0.00	1.542	6.12	0.99	3.0	96.9	0.0	1.36	0.76	0.65	—	2.9	0.004	0.57	0.0	0.04	16.40	0.00	1.522	15.21	0.00	6.8	93.2	0.0	-0.26	1.38	0.81	0.75	—	235846	9318	52	2596	1	0	105613	logfile

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