Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WB0	32391	2023-08-11	2021-12-15	3.2	3.52	—	3.3	0.003	0.58	0.0	0.03	18.37	0.00	2.136	7.20	0.00	3.3	96.6	0.1	0.54	0.70	0.73	1.78	3.3	0.003	0.58	0.0	0.03	19.27	0.00	2.184	8.33	0.00	4.3	95.6	0.1	0.39	1.06	0.71	0.77	1.00	10096	797	4	175	0	0	0	logfile
✔	7N0K	24107	2023-08-09	2021-05-25	3.5	4.16	—	4.1	0.003	0.56	0.0	0.03	18.36	0.00	2.238	8.16	7.46	1.0	99.0	0.0	-2.20	0.63	0.77	1.65	4.1	0.003	0.61	0.0	0.03	19.19	0.00	2.266	8.55	0.93	2.3	97.7	0.0	3.43	0.71	0.60	0.75	0.87	5154	626	2	0	0	0	0	logfile
✔	8CoM	16777	2023-08-11	2023-02-28	3.3	3.62	3.41	3.7	0.004	0.57	0.0	0.03	28.74	0.00	2.228	8.93	0.34	1.7	98.3	0.0	2.02	0.70	0.82	1.34	3.7	0.003	0.54	0.0	0.03	28.68	0.00	2.188	8.88	0.69	1.0	99.0	0.0	2.63	0.92	0.68	0.80	1.13	10705	708	10	254	0	0	0	logfile
✔	7M4Z	23671	2023-08-22	2021-03-22	2.92	1.87	—	1.6	0.005	0.54	0.0	0.03	15.14	0.02	1.833	4.61	0.00	3.0	96.9	0.2	1.09	0.77	0.72	2.81	2.5	0.004	0.69	0.0	0.04	16.16	0.01	1.686	6.98	1.94	3.4	96.4	0.2	0.27	0.92	0.80	0.76	2.74	138172	5625	70	4373	190	229	0	logfile
✔	7P1J	13162	2023-08-09	2021-07-01	3.04	4.02	2.96	4.0	0.002	0.48	0.0	0.03	8.89	0.00	2.305	5.96	2.29	3.5	96.5	0.0	2.14	0.65	0.71	0.64	4.0	0.003	0.87	0.0	0.04	14.68	0.00	2.227	16.91	0.72	6.3	93.7	0.0	0.73	1.43	0.66	0.74	0.77	6502	868	2	0	0	0	0	logfile
✔	7BL6	12219	2023-08-22	2021-01-18	4.0	7.11	—	4.0	0.002	0.42	0.0	0.03	13.17	0.00	2.117	10.95	0.07	4.7	95.3	0.1	-0.28	0.92	0.83	—	4.0	0.004	0.64	0.0	0.03	16.68	0.00	1.966	34.80	0.34	7.9	91.9	0.1	-1.41	3.11	0.95	0.82	—	92769	3600	42	3016	5	27	0	logfile
✔	8G8G	29850	2023-08-13	2023-02-17	3.2	4.22	3.27	3.4	0.005	0.59	0.0	0.03	27.75	0.00	1.622	6.71	0.64	1.8	98.2	0.0	-0.50	0.70	0.50	0.77	3.0	0.004	0.65	0.0	0.03	28.86	0.00	2.193	11.69	0.13	2.9	97.1	0.0	1.87	1.57	0.91	0.87	1.73	14558	931	11	348	0	0	0	logfile
✔	8E55	27903	2023-08-12	2022-08-19	3.85	4.07	3.34	4.0	0.007	0.67	0.0	0.03	12.36	0.00	2.252	3.39	0.50	2.5	97.5	0.0	1.17	0.66	0.60	-0.11	4.0	0.003	0.55	0.0	0.03	16.13	0.00	2.262	10.49	0.00	1.8	98.2	0.0	4.40	1.43	0.69	0.70	-0.11	12176	780	4	0	0	0	6104	logfile
✔	7DBP	30161	2023-08-13	2020-10-21	4.5	5.32	—	4.3	0.003	0.45	0.0	0.03	27.36	0.00	2.226	8.54	0.57	4.4	94.9	0.7	-0.94	0.87	0.76	—	4.3	0.005	0.66	0.0	0.03	30.47	0.00	2.147	27.18	0.00	3.7	96.3	0.0	0.77	2.53	0.90	0.74	—	13801	837	11	350	0	0	0	logfile
✔	6X33	22016	2023-08-12	2020-05-21	4.2	4.35	—	4.3	0.001	0.37	0.0	0.03	9.39	0.00	2.304	3.24	0.00	1.9	98.1	0.0	-4.22	0.55	0.69	—	4.3	0.003	0.64	0.0	0.04	11.75	0.00	2.056	8.49	0.06	3.0	97.0	0.0	0.21	0.65	0.57	0.72	—	112372	14796	16	0	1436	0	0	logfile
✔	8E4o	27894	2023-08-09	2022-08-18	3.43	3.87	3.39	3.6	0.002	0.44	0.0	0.03	11.67	0.01	2.257	5.45	0.45	1.8	98.2	0.0	2.99	0.68	0.73	2.38	3.7	0.003	0.66	0.0	0.03	13.35	0.00	2.024	6.81	0.19	3.0	97.0	0.0	2.90	0.72	0.72	0.80	1.84	53496	3588	8	0	4	0	26024	logfile
✔	5LY6	4118	2023-08-09	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.62	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.003	0.77	0.0	0.04	13.91	0.00	2.223	14.60	0.00	8.3	91.5	0.2	-2.31	3.59	0.40	0.76	—	3725	471	1	0	0	0	0	logfile
✔	6WFQ	21652	2023-08-09	2020-04-03	3.9	4.88	3.77	3.9	0.002	0.49	0.0	0.03	16.66	0.00	2.265	8.11	0.80	4.3	95.7	0.0	-2.49	0.84	0.78	0.76	3.8	0.003	0.92	0.0	0.04	19.12	0.00	2.154	16.10	0.00	6.3	93.7	0.0	-0.17	0.73	0.85	0.80	0.54	4164	447	4	30	0	0	0	logfile
✔	6T2V	10370	2023-08-17	2019-10-09	3.8	4.58	—	3.8	0.002	0.45	0.0	0.03	13.03	0.01	2.213	4.84	3.02	2.0	98.0	0.0	-3.62	0.88	0.73	0.79	3.8	0.004	0.72	0.0	0.04	15.71	0.00	2.160	15.45	0.17	4.1	95.9	0.0	0.33	2.38	0.90	0.80	0.62	23826	2847	4	54	0	0	0	logfile
✔	7MVZ	24059	2023-08-19	2021-05-15	2.81	3.64	2.78	3.1	0.002	0.48	0.0	0.03	7.60	0.00	2.206	2.84	0.00	1.6	98.4	0.0	-1.11	0.80	0.67	0.58	3.2	0.004	0.66	0.0	0.04	14.27	0.00	1.969	15.82	2.27	4.4	95.6	0.0	0.87	1.86	0.84	0.76	1.43	26733	1707	3	0	0	0	13421	logfile
✔	7XSM	33427	2023-08-12	2022-05-14	4.01	4.70	4.03	4.0	0.002	0.47	0.0	0.03	15.76	0.00	1.969	7.06	0.00	0.0	0.0	0.0	—	0.90	0.75	—	4.0	0.007	0.76	0.0	0.04	19.93	0.01	1.773	49.65	0.00	0.0	0.0	0.0	—	1.70	0.92	0.82	—	12464	0	1	388	0	0	4165	logfile
✔	7YG9	33812	2023-08-10	2022-07-11	2.68	3.47	2.76	2.8	0.005	0.51	0.0	0.03	15.21	0.00	1.804	13.88	0.00	0.0	0.0	0.0	—	0.86	0.81	—	2.8	0.006	0.61	0.0	0.04	15.60	0.00	1.866	18.12	0.00	0.0	0.0	0.0	—	0.39	0.92	0.92	—	8630	0	3	404	8	0	0	logfile
✔	7ZS5	14926	2023-08-17	2022-05-06	3.2	3.53	3.32	3.3	0.002	0.55	0.0	0.03	16.11	0.00	1.329	12.45	0.02	2.5	97.1	0.4	-1.60	0.84	0.78	1.80	3.3	0.008	0.84	0.0	0.05	17.43	0.01	1.851	20.60	1.03	9.6	90.0	0.4	-1.91	0.41	0.86	0.82	1.68	127849	6416	50	3603	24	0	0	logfile
✔	7PGQ	13392	2023-08-21	2021-08-15	3.5	3.89	3.50	3.6	0.003	0.45	0.0	0.03	10.46	0.00	1.905	3.80	0.91	1.2	98.8	0.0	-0.24	0.81	0.79	1.38	3.6	0.002	0.54	0.0	0.03	12.83	0.00	2.038	5.60	0.17	3.3	96.6	0.1	1.23	0.73	0.81	0.79	1.31	31508	1970	3	0	2	0	15807	logfile
✔	7E9C	31029	2023-08-17	2021-03-04	3.5	4.28	3.62	4.0	0.003	0.58	0.0	0.03	26.96	0.00	2.221	12.74	0.14	3.3	96.7	0.0	0.16	0.78	0.69	0.28	4.0	0.005	0.69	0.0	0.04	28.49	0.01	2.118	20.22	1.24	5.0	95.0	0.0	-0.18	1.64	0.83	0.79	0.82	12338	898	11	260	0	0	0	logfile

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