Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6ZLG	11265	2021-09-05	2020-06-30	3.0	3.18	—	3.1	0.003	0.44	0.0	0.03	16.50	0.00	2.180	7.60	4.15	0.1	99.9	0.0	1.26	0.80	0.87	2.98	3.1	0.002	0.37	0.0	0.03	17.92	0.00	2.140	5.93	2.64	1.5	98.5	0.0	5.31	1.61	0.82	0.89	2.59	33008	4072	24	0	0	0	0	logfile
✔	7oBR	12801	2021-09-09	2021-04-23	2.8	2.88	—	2.9	0.002	0.49	1.0	0.03	15.19	0.00	1.835	8.00	2.55	4.6	95.3	0.0	0.58	0.61	0.80	2.85	2.8	0.006	0.77	0.0	0.04	17.41	0.01	1.846	9.70	3.49	6.1	93.8	0.1	-0.21	1.22	0.65	0.87	3.23	146701	7484	60	4019	102	0	0	logfile
✔	7o5H	12736	2021-09-05	2021-04-08	3.1	2.93	3.04	2.8	0.002	0.33	0.0	0.03	12.30	0.00	1.262	5.88	0.98	2.1	97.9	0.0	1.09	0.86	0.83	1.84	2.8	0.007	0.72	0.0	0.04	14.86	0.01	1.179	14.09	0.56	4.2	95.8	0.0	0.21	1.49	0.87	0.85	1.47	34436	1730	22	964	167	0	0	logfile
✔	7NSi	12568	2021-09-04	2021-03-07	4.6	4.72	4.58	4.6	0.002	0.49	0.0	0.03	13.29	0.00	1.198	8.38	1.53	2.9	97.0	0.1	0.93	0.70	0.73	—	4.6	0.003	0.69	0.0	0.04	16.05	0.01	1.150	20.40	0.02	5.4	94.6	0.0	-0.40	3.29	0.73	0.81	—	174700	14538	117	2647	390	3	0	logfile
✔	7oQZ	13035	2021-09-02	2021-06-04	3.27	3.59	3.75	3.8	0.009	0.98	0.0	0.03	13.71	0.00	2.257	3.35	0.51	1.3	98.7	0.0	4.83	0.61	0.78	2.67	3.8	0.003	0.68	0.0	0.04	17.01	0.00	2.195	9.24	0.38	3.4	96.6	0.0	3.46	0.87	0.64	0.81	2.37	7996	948	8	0	16	0	0	logfile
✔	7NFX	12303	2021-09-09	2021-02-08	3.2	3.29	—	3.3	0.002	0.52	0.0	0.03	15.77	0.00	2.097	8.78	3.98	4.9	95.0	0.1	0.36	0.55	0.78	2.57	3.2	0.004	0.64	0.0	0.04	17.05	0.00	2.030	10.09	0.41	5.9	94.0	0.1	0.04	0.60	0.57	0.83	2.37	148232	7672	62	4018	30	0	0	logfile
✔	7oDR	12845	2021-09-02	2021-04-30	2.9	3.11	—	3.0	0.002	0.41	0.0	0.03	11.10	0.02	1.963	4.94	0.44	1.1	98.9	0.0	0.96	0.74	0.80	3.31	3.0	0.009	0.86	1.0	0.04	15.32	0.01	1.739	10.95	2.12	2.2	97.8	0.0	0.83	1.26	0.76	0.84	2.67	107464	9244	68	1489	135	0	0	logfile
✔	7oDT	12847	2021-09-03	2021-04-30	3.1	3.31	—	3.1	0.002	0.41	0.0	0.03	10.97	0.01	1.988	5.24	0.53	1.2	98.8	0.0	1.05	0.77	0.79	2.84	3.1	0.008	0.80	2.0	0.04	15.01	0.01	1.540	12.71	0.19	3.6	96.4	0.0	0.23	0.75	0.78	0.82	2.48	110473	9585	71	1526	110	0	0	logfile
✔	7oN1	12993	2021-09-03	2021-05-25	3.35	3.18	—	3.4	0.002	0.47	0.0	0.03	26.28	0.00	2.120	6.38	0.00	1.5	98.5	0.0	-0.25	0.82	0.83	1.11	3.4	0.004	0.56	0.0	0.03	27.32	0.00	2.107	6.48	0.31	3.0	97.0	0.0	2.59	1.34	0.85	0.89	1.51	11150	777	12	246	0	0	0	logfile
✔	6XKY	22229	2021-09-06	2020-06-27	3.2	3.13	3.17	3.2	0.006	0.55	0.0	0.03	10.04	0.00	1.588	4.66	0.48	1.5	98.5	0.0	2.67	0.52	0.86	2.05	3.2	0.004	0.48	0.0	0.03	14.15	0.00	2.043	4.50	0.26	1.9	98.1	0.0	3.59	0.50	0.52	0.88	1.80	38760	5420	20	0	0	0	0	logfile
✔	7NSJ	12569	2021-09-04	2021-03-07	3.9	4.09	3.81	3.9	0.003	0.48	0.0	0.03	13.48	0.00	1.314	8.16	1.36	2.9	97.1	0.0	0.91	0.77	0.82	1.42	3.9	0.007	0.78	3.0	0.04	16.60	0.01	1.330	15.83	0.68	4.0	96.0	0.0	0.35	1.78	0.79	0.85	1.25	174837	14369	117	2719	387	3	0	logfile
✔	5Z3T	6881	2021-09-03	2018-01-08	4.06	4.16	—	4.1	0.003	0.55	0.0	0.03	22.39	0.00	2.112	13.07	0.00	8.2	91.8	0.0	-2.90	0.77	0.68	—	4.1	0.004	0.65	0.0	0.04	24.97	0.01	2.152	13.97	0.00	5.6	94.4	0.0	0.51	1.94	0.84	0.80	—	16766	1341	12	292	3	0	0	logfile
✔	7oDS	12846	2021-09-02	2021-04-30	3.1	3.32	—	3.1	0.002	0.40	0.0	0.03	11.15	0.02	2.009	5.00	0.51	1.2	98.8	0.0	0.91	0.78	0.76	2.42	3.1	0.005	0.77	0.0	0.04	14.89	0.01	1.469	12.32	0.12	3.1	96.9	0.0	0.58	1.70	0.79	0.79	2.14	108339	9371	67	1487	132	0	0	logfile
✔	7AC7	11713	2021-09-12	2020-09-10	3.08	3.25	3.06	3.1	0.003	0.58	5.0	0.03	14.38	0.02	1.183	10.03	0.66	3.1	96.7	0.2	-0.42	0.80	0.83	2.85	3.1	0.007	0.71	0.0	0.04	15.77	0.01	1.094	8.75	0.76	4.2	95.7	0.1	-0.17	0.62	0.84	0.90	2.67	154883	5975	71	5017	443	0	0	logfile
✔	7BL4	12217	2021-09-06	2021-01-18	2.4	3.20	—	3.0	0.002	0.45	0.0	0.03	13.36	0.00	2.015	8.92	0.03	5.1	94.9	0.1	-0.52	0.80	0.85	2.49	3.0	0.004	0.61	0.0	0.03	14.89	0.00	1.882	11.52	3.43	6.6	93.3	0.1	-1.06	1.12	0.80	0.87	2.23	93560	3702	47	3016	9	35	0	logfile
✔	6PoM	20416	2021-09-02	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	17.29	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	5.0	0.010	1.28	0.0	0.06	21.62	0.01	1.931	58.70	0.00	0.0	0.0	0.0	—	1.78	0.74	0.80	—	4937	0	2	230	0	0	0	logfile
✔	7BL3	12216	2021-09-06	2021-01-18	3.5	3.69	—	3.5	0.002	0.48	0.0	0.03	14.11	0.00	2.089	12.40	0.03	6.4	93.6	0.0	-1.33	0.75	0.79	1.02	3.5	0.005	0.68	0.0	0.04	15.76	0.01	1.982	18.52	0.82	9.2	90.8	0.0	-1.89	1.44	0.76	0.83	1.09	92831	3612	39	3021	2	27	0	logfile
✔	7BL5	12218	2021-09-07	2021-01-18	3.3	3.74	—	3.5	0.002	0.45	0.0	0.03	14.15	0.00	2.029	11.75	0.11	5.7	94.3	0.0	-1.05	0.75	0.79	1.02	3.5	0.006	0.75	1.0	0.04	16.39	0.01	1.815	21.95	1.30	9.7	90.3	0.0	-2.06	1.46	0.77	0.84	1.14	98927	4348	46	3033	3	27	0	logfile
✔	6V39	21030	2021-09-07	2019-11-25	3.04	3.20	—	3.1	0.002	0.49	0.0	0.03	14.67	0.02	1.895	6.17	0.00	2.5	97.4	0.1	-1.02	0.86	0.85	2.53	3.1	0.007	0.76	0.0	0.04	16.57	0.01	1.758	9.15	0.70	5.0	94.9	0.1	-0.23	1.62	0.88	0.88	2.85	141897	5458	70	4615	116	273	0	logfile
✔	3J9W	6306	2021-09-05	2015-03-16	3.9	3.93	—	3.8	0.010	1.50	0.0	0.03	15.63	0.02	1.433	8.82	0.26	6.0	92.0	2.0	-1.66	0.74	0.72	0.72	3.8	0.005	0.73	1.0	0.04	17.70	0.00	2.068	17.45	1.13	7.2	92.2	0.6	-0.59	1.79	0.80	0.84	1.11	135425	5661	54	4675	0	0	0	logfile

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