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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6PoM | 20416 | 2023-02-17 | 2019-07-04 | 4.9 | 5.01 | — | 5.0 | 0.003 | 0.64 | 0.0 | 0.03 | 17.29 | 0.00 | 2.075 | 3.10 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.61 | 0.64 | — | 5.0 | 0.010 | 1.28 | 0.0 | 0.06 | 21.46 | 0.01 | 1.930 | 61.80 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.76 | 0.75 | 0.80 | — | 4937 | 0 | 2 | 230 | 0 | 0 | 0 | logfile |
✔ | 7Z4C | 14493 | 2023-02-22 | 2022-03-03 | 3.87 | 5.00 | 3.91 | 4.1 | 0.003 | 0.45 | 0.0 | 0.03 | 15.32 | 0.00 | 2.232 | 8.05 | 2.06 | 2.5 | 97.5 | 0.0 | 1.06 | 0.91 | 0.83 | 1.82 | 4.1 | 0.003 | 0.58 | 0.0 | 0.04 | 16.67 | 0.00 | 2.163 | 12.60 | 0.08 | 2.9 | 97.1 | 0.0 | 1.05 | 0.96 | 0.91 | 0.84 | 1.31 | 14180 | 1357 | 4 | 148 | 0 | 0 | 0 | logfile |
✔ | 7PGQ | 13392 | 2023-02-27 | 2021-08-15 | 3.5 | 3.89 | 3.50 | 3.6 | 0.003 | 0.45 | 0.0 | 0.03 | 10.46 | 0.00 | 1.905 | 3.80 | 0.91 | 1.2 | 98.8 | 0.0 | -0.24 | 0.81 | 0.79 | 1.38 | 3.6 | 0.002 | 0.54 | 0.0 | 0.03 | 12.83 | 0.00 | 2.038 | 5.60 | 0.17 | 3.3 | 96.6 | 0.1 | 1.23 | 0.73 | 0.81 | 0.79 | 1.31 | 31508 | 1970 | 3 | 0 | 2 | 0 | 15807 | logfile |
✔ | 5LY6 | 4118 | 2023-02-17 | 2016-09-24 | 4.5 | 4.72 | — | 4.3 | 0.006 | 1.24 | 0.0 | 0.03 | 24.28 | 0.02 | 1.526 | 94.62 | 36.32 | 20.9 | 74.2 | 4.9 | -5.32 | 0.34 | 0.59 | — | 4.4 | 0.004 | 0.81 | 0.0 | 0.04 | 14.05 | 0.00 | 2.184 | 19.06 | 0.00 | 10.7 | 88.9 | 0.4 | -2.62 | 2.58 | 0.40 | 0.76 | — | 3725 | 471 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WCC | 21606 | 2023-02-20 | 2020-03-30 | 3.24 | 3.27 | — | 3.3 | 0.003 | 0.51 | 0.0 | 0.03 | 15.73 | 0.00 | 2.025 | 4.39 | 2.26 | 0.8 | 99.2 | 0.0 | 1.46 | 0.53 | 0.76 | 1.58 | 3.3 | 0.004 | 0.54 | 0.0 | 0.03 | 15.79 | 0.00 | 2.165 | 7.14 | 0.32 | 2.8 | 97.2 | 0.0 | 3.98 | 1.30 | 0.51 | 0.78 | 1.96 | 11629 | 734 | 6 | 0 | 5 | 12 | 5908 | logfile |
✔ | 7Q2Z | 13786 | 2023-02-18 | 2021-10-26 | 3.2 | 2.91 | 3.15 | 3.2 | 0.002 | 0.48 | 0.0 | 0.03 | 18.78 | 0.00 | 2.227 | 4.26 | 0.00 | 6.5 | 93.4 | 0.1 | -1.44 | 0.67 | 0.80 | 2.05 | 3.2 | 0.003 | 0.54 | 0.0 | 0.03 | 19.97 | 0.00 | 2.121 | 3.33 | 0.00 | 2.8 | 97.1 | 0.1 | 2.11 | 1.23 | 0.70 | 0.86 | 1.84 | 8258 | 902 | 4 | 46 | 0 | 0 | 0 | logfile |
✔ | 7oQZ | 13035 | 2023-02-18 | 2021-06-04 | 3.27 | 3.59 | 3.75 | 3.8 | 0.009 | 0.98 | 0.0 | 0.03 | 13.71 | 0.00 | 2.257 | 3.35 | 0.51 | 1.3 | 98.7 | 0.0 | 4.83 | 0.61 | 0.78 | 2.67 | 3.8 | 0.004 | 0.75 | 0.0 | 0.04 | 17.35 | 0.00 | 2.109 | 11.10 | 1.15 | 3.1 | 96.9 | 0.0 | 3.11 | 0.81 | 0.63 | 0.81 | 2.23 | 7996 | 948 | 8 | 0 | 16 | 0 | 0 | logfile |
✔ | 6PEK | 20327 | 2023-02-20 | 2019-06-20 | 4.2 | 4.25 | — | 4.2 | 0.005 | 0.73 | 0.0 | 0.03 | 13.79 | 0.00 | 1.913 | 4.42 | 0.00 | 0.8 | 99.2 | 0.0 | -2.47 | 0.70 | 0.74 | — | 4.2 | 0.003 | 0.74 | 0.0 | 0.04 | 14.87 | 0.00 | 1.129 | 14.37 | 0.00 | 3.0 | 97.0 | 0.0 | -0.34 | 0.99 | 0.71 | 0.77 | — | 11106 | 1405 | 11 | 0 | 13 | 0 | 0 | logfile |
✔ | 7MVU | 24056 | 2023-02-25 | 2021-05-15 | 3.77 | 4.87 | 3.73 | 4.0 | 0.002 | 0.36 | 0.0 | 0.03 | 6.38 | 0.00 | 2.187 | 3.55 | 0.00 | 1.1 | 98.9 | 0.0 | -0.33 | 0.85 | 0.73 | 0.19 | 4.0 | 0.003 | 0.58 | 0.0 | 0.03 | 11.75 | 0.00 | 1.882 | 11.93 | 0.22 | 3.2 | 96.8 | 0.0 | 2.54 | 2.06 | 0.88 | 0.82 | 0.36 | 25645 | 1604 | 2 | 0 | 0 | 0 | 12841 | logfile |
✔ | 8D9L | 27265 | 2023-02-17 | 2022-06-10 | 4.04 | 5.24 | 4.18 | 4.5 | 0.002 | 0.44 | 0.0 | 0.03 | 9.71 | 0.00 | 2.250 | 7.25 | 0.43 | 1.8 | 98.2 | 0.0 | 1.09 | 0.89 | 0.80 | — | 4.4 | 0.003 | 0.56 | 0.0 | 0.04 | 12.09 | 0.00 | 2.145 | 18.40 | 0.00 | 4.4 | 95.6 | 0.0 | 0.00 | 0.69 | 0.90 | 0.84 | — | 5757 | 553 | 4 | 65 | 1 | 0 | 0 | logfile |
✔ | 8CZi | 27098 | 2023-02-16 | 2022-05-24 | 2.22 | 2.26 | 2.61 | 2.0 | 0.004 | 0.33 | 0.0 | 0.03 | 14.48 | 0.00 | 2.382 | 6.62 | 0.00 | 0.0 | 100.0 | 0.0 | 2.90 | 0.78 | 0.80 | 1.97 | 2.0 | 0.004 | 0.39 | 0.0 | 0.03 | 15.18 | 0.00 | 2.140 | 5.65 | 0.34 | 0.0 | 100.0 | 0.0 | 5.55 | 0.85 | 0.83 | 0.84 | 1.84 | 2550 | 339 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QEY | 13944 | 2023-02-19 | 2021-12-03 | 2.0 | 2.46 | — | 2.2 | 0.009 | 0.57 | 0.0 | 0.03 | 10.74 | 0.00 | 2.199 | 3.57 | 2.35 | 1.7 | 98.3 | 0.0 | 1.74 | 0.77 | 0.90 | 5.27 | 2.1 | 0.004 | 0.68 | 0.0 | 0.04 | 13.34 | 0.00 | 2.160 | 4.49 | 1.12 | 2.3 | 97.7 | 0.0 | 3.13 | 0.56 | 0.78 | 0.93 | 4.39 | 9467 | 1092 | 18 | 0 | 30 | 281 | 0 | logfile |
✔ | 8CVi | 27008 | 2023-02-25 | 2022-05-18 | 3.4 | 3.54 | 3.20 | 3.4 | 0.003 | 0.49 | 0.0 | 0.03 | 13.53 | 0.00 | 2.073 | 8.79 | 0.05 | 4.0 | 95.9 | 0.1 | 1.49 | 0.55 | 0.83 | 1.22 | 3.4 | 0.003 | 0.58 | 1.0 | 0.04 | 16.27 | 0.00 | 2.023 | 10.85 | 0.42 | 4.0 | 96.0 | 0.0 | 3.71 | 2.21 | 0.58 | 0.84 | 0.83 | 66030 | 8856 | 33 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XMG | 22258 | 2023-02-18 | 2020-06-30 | 4.8 | 8.26 | — | 3.9 | 0.002 | 0.53 | 0.0 | 0.03 | 16.06 | 0.00 | 2.187 | 10.77 | 0.00 | 6.7 | 93.3 | 0.0 | -2.01 | 0.90 | 0.74 | — | 3.5 | 0.004 | 0.78 | 0.0 | 0.04 | 18.81 | 0.01 | 2.001 | 46.91 | 0.20 | 11.0 | 89.0 | 0.0 | -2.08 | 0.78 | 0.90 | 0.78 | — | 8361 | 638 | 4 | 154 | 1 | 0 | 0 | logfile |
✔ | 6T9L | 10415 | 2023-02-22 | 2019-10-28 | 3.6 | 3.74 | 3.53 | 3.6 | 0.002 | 0.47 | 0.0 | 0.03 | 22.54 | 0.00 | 2.136 | 7.11 | 0.07 | 1.1 | 98.9 | 0.0 | -1.63 | 0.74 | 0.68 | 0.82 | 3.6 | 0.005 | 0.68 | 0.0 | 0.04 | 25.18 | 0.00 | 1.945 | 9.77 | 0.37 | 3.5 | 96.5 | 0.0 | 0.77 | 0.84 | 0.84 | 0.84 | 1.37 | 18157 | 1532 | 18 | 290 | 8 | 0 | 0 | logfile |
✔ | 7RZS | 24776 | 2023-02-16 | 2021-08-27 | 2.52 | 2.32 | — | 2.1 | 0.005 | 0.46 | 0.0 | 0.03 | 14.73 | 0.00 | 2.273 | 3.04 | 0.00 | 1.0 | 99.0 | 0.0 | 1.98 | 0.77 | 0.79 | 1.82 | 2.0 | 0.003 | 0.42 | 0.0 | 0.04 | 16.16 | 0.00 | 2.327 | 4.66 | 0.35 | 0.0 | 100.0 | 0.0 | 5.95 | 1.19 | 0.79 | 0.82 | 1.19 | 2445 | 324 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oN1 | 12993 | 2023-02-20 | 2021-05-25 | 3.35 | 3.18 | — | 3.4 | 0.002 | 0.47 | 0.0 | 0.03 | 26.28 | 0.00 | 2.120 | 6.38 | 0.00 | 1.5 | 98.5 | 0.0 | -0.25 | 0.82 | 0.83 | 1.11 | 3.4 | 0.004 | 0.56 | 0.0 | 0.03 | 27.34 | 0.00 | 2.084 | 6.23 | 0.31 | 3.4 | 96.6 | 0.0 | 2.50 | 1.33 | 0.84 | 0.90 | 1.58 | 11150 | 777 | 12 | 246 | 0 | 0 | 0 | logfile |
✔ | 7ZiR | 14738 | 2023-02-16 | 2022-04-08 | 2.5 | 2.51 | 2.04 | 2.7 | 0.002 | 0.34 | 0.0 | 0.03 | 9.02 | 0.00 | 2.317 | 1.65 | 0.00 | 2.0 | 98.0 | 0.0 | -3.82 | 0.48 | 0.90 | 7.46 | 2.7 | 0.003 | 0.46 | 0.0 | 0.04 | 12.12 | 0.00 | 2.316 | 0.28 | 0.00 | 2.9 | 97.1 | 0.0 | -3.83 | 1.03 | 0.50 | 0.93 | 7.96 | 2120 | 255 | 10 | 0 | 0 | 50 | 0 | logfile |
✘ | 7PiM | 13442 | 2023-02-20 | 2021-08-20 | 4.6 | 5.02 | 5.18 | 4.6 | 0.002 | 0.41 | 0.0 | 0.03 | 8.31 | 0.00 | 1.900 | 45.64 | 0.67 | 2.0 | 98.0 | 0.0 | 2.23 | 0.81 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11844 | 1412 | 12 | 0 | 8 | 0 | 524 | logfile |
✔ | 7TAN | 25777 | 2023-02-20 | 2021-12-21 | 3.0 | 2.95 | — | 3.1 | 0.003 | 0.47 | 0.0 | 0.03 | 27.32 | 0.00 | 2.287 | 3.25 | 0.00 | 2.8 | 97.2 | 0.0 | 2.18 | 0.82 | 0.85 | 2.22 | 3.1 | 0.004 | 0.51 | 0.0 | 0.03 | 27.86 | 0.00 | 2.221 | 2.61 | 0.78 | 2.0 | 98.0 | 0.0 | 2.33 | 0.33 | 0.83 | 0.87 | 2.17 | 12119 | 768 | 12 | 294 | 0 | 0 | 0 | logfile |