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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7Z0o | 14428 | 2023-08-12 | 2022-02-23 | 2.8 | 1.99 | 2.70 | 1.8 | 0.004 | 0.66 | 0.0 | 0.04 | 19.63 | 0.00 | 2.189 | 6.20 | 1.42 | 1.7 | 98.3 | 0.0 | 1.08 | 0.68 | 0.73 | 3.27 | 1.7 | 0.004 | 0.60 | 0.0 | 0.04 | 21.27 | 0.00 | 2.148 | 9.25 | 3.29 | 2.0 | 98.0 | 0.0 | 1.65 | 0.48 | 0.77 | 0.79 | 3.26 | 11864 | 1256 | 10 | 78 | 0 | 0 | 0 | logfile |
✘ | 6X1A | 21994 | 2023-08-12 | 2020-05-18 | 2.5 | 1.99 | 2.50 | 2.6 | 0.006 | 0.93 | 0.0 | 0.07 | 15.41 | 0.00 | 2.140 | 14.37 | 3.79 | 3.9 | 96.1 | 0.0 | -3.15 | 0.51 | 0.71 | 2.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10140 | 1262 | 5 | 0 | 1 | 23 | 0 | logfile |
✔ | 8BC3 | 15961 | 2023-08-14 | 2022-10-14 | 2.1 | 2.00 | 2.14 | 2.2 | 0.014 | 2.07 | 0.0 | 0.11 | 17.99 | 0.02 | 2.310 | 1.34 | 11.95 | 3.3 | 96.7 | 0.0 | -4.28 | 0.71 | 0.83 | 5.67 | 2.1 | 0.002 | 0.54 | 0.0 | 0.04 | 15.44 | 0.00 | 2.168 | 4.01 | 0.63 | 0.6 | 99.4 | 0.0 | 1.85 | 0.51 | 0.76 | 0.87 | 5.99 | 16880 | 2170 | 30 | 0 | 10 | 500 | 0 | logfile |
✔ | 8ABL | 15325 | 2023-08-21 | 2022-07-04 | 2.1 | 2.00 | 2.04 | 2.0 | 0.010 | 1.69 | 34.0 | 0.11 | 17.90 | 0.01 | 2.060 | 2.82 | 4.41 | 2.2 | 97.8 | 0.0 | -0.94 | 0.73 | 0.90 | 6.29 | 2.0 | 0.003 | 0.62 | 0.0 | 0.04 | 17.53 | 0.00 | 2.197 | 4.21 | 1.15 | 1.4 | 98.6 | 0.0 | 1.94 | 1.31 | 0.74 | 0.90 | 5.69 | 31660 | 3878 | 33 | 0 | 32 | 0 | 0 | logfile |
✔ | 7SiM | 25144 | 2023-08-12 | 2021-10-14 | 2.7 | 2.00 | — | 1.6 | 0.005 | 0.71 | 0.0 | 0.05 | 13.50 | 0.00 | 2.302 | 7.90 | 0.07 | 1.7 | 98.3 | 0.0 | 0.36 | 0.74 | 0.72 | 3.19 | 1.6 | 0.003 | 0.55 | 0.0 | 0.04 | 15.84 | 0.00 | 2.196 | 9.00 | 0.81 | 1.6 | 98.4 | 0.0 | 0.50 | 0.93 | 0.75 | 0.76 | 3.23 | 12826 | 1564 | 8 | 0 | 28 | 0 | 0 | logfile |
✔ | 7YPG | 33999 | 2023-08-09 | 2022-08-03 | 2.5 | 2.00 | 2.09 | 3.0 | 0.008 | 0.80 | 0.0 | 0.06 | 14.50 | 0.00 | 2.331 | 9.02 | 0.00 | 12.3 | 87.7 | 0.0 | -5.97 | 0.40 | 0.82 | 3.85 | 3.0 | 0.003 | 0.62 | 0.0 | 0.05 | 18.36 | 0.00 | 2.260 | 10.68 | 3.21 | 5.6 | 94.4 | 0.0 | -5.21 | 0.66 | 0.41 | 0.82 | 3.09 | 2676 | 354 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SSS | 25413 | 2023-08-14 | 2021-11-11 | 2.4 | 2.00 | 2.36 | 2.4 | 0.006 | 0.66 | 0.0 | 0.04 | 14.29 | 0.02 | 2.323 | 3.55 | 0.00 | 2.4 | 97.6 | 0.0 | 0.01 | 0.59 | 0.78 | 4.08 | 2.3 | 0.003 | 0.61 | 0.0 | 0.04 | 17.86 | 0.00 | 2.126 | 10.16 | 2.41 | 3.9 | 96.1 | 0.0 | 2.31 | 0.59 | 0.60 | 0.78 | 3.63 | 12190 | 1416 | 24 | 0 | 38 | 170 | 0 | logfile |
✔ | 7TZF | 26208 | 2023-08-11 | 2022-02-15 | 2.4 | 2.00 | 2.20 | 2.3 | 0.004 | 0.53 | 0.0 | 0.04 | 14.56 | 0.00 | 2.252 | 4.74 | 1.43 | 1.0 | 99.0 | 0.0 | -2.36 | 0.54 | 0.77 | 4.70 | 2.0 | 0.002 | 0.55 | 0.0 | 0.04 | 16.89 | 0.00 | 2.212 | 5.33 | 1.72 | 1.7 | 98.3 | 0.0 | 0.92 | 0.83 | 0.56 | 0.82 | 4.60 | 10342 | 1272 | 13 | 0 | 19 | 25 | 0 | logfile |
✔ | 8D33 | 27154 | 2023-08-14 | 2022-05-31 | 2.46 | 2.01 | 2.48 | 1.7 | 0.003 | 0.55 | 0.0 | 0.04 | 13.00 | 0.00 | 2.091 | 4.01 | 0.39 | 3.5 | 96.5 | 0.1 | 0.90 | 0.73 | 0.78 | 3.10 | 1.6 | 0.004 | 0.66 | 0.0 | 0.04 | 18.13 | 0.00 | 2.158 | 7.95 | 3.49 | 3.9 | 96.0 | 0.1 | 0.37 | 1.33 | 0.73 | 0.79 | 3.25 | 15272 | 1784 | 6 | 46 | 2 | 0 | 0 | logfile |
✔ | 7RXG | 24730 | 2023-08-12 | 2021-08-23 | 2.28 | 2.01 | — | 2.3 | 0.008 | 1.27 | 0.0 | 0.05 | 17.95 | 0.00 | 2.211 | 14.00 | 0.18 | 2.5 | 97.4 | 0.2 | -0.83 | 0.61 | 0.82 | 4.82 | 2.3 | 0.005 | 0.64 | 0.0 | 0.04 | 17.08 | 0.01 | 2.010 | 16.49 | 0.89 | 3.3 | 96.7 | 0.0 | 1.26 | 0.91 | 0.66 | 0.87 | 5.46 | 11380 | 1300 | 6 | 0 | 26 | 48 | 96 | logfile |
✔ | 8GXU | 34362 | 2023-08-20 | 2022-09-21 | 2.5 | 2.02 | 2.54 | 2.3 | 0.007 | 0.57 | 0.0 | 0.05 | 14.47 | 0.01 | 1.855 | 4.64 | 0.00 | 3.2 | 96.8 | 0.0 | 0.82 | 0.64 | 0.79 | 4.52 | 2.2 | 0.003 | 0.57 | 0.0 | 0.04 | 17.35 | 0.00 | 2.124 | 6.63 | 1.27 | 2.3 | 97.7 | 0.0 | 1.06 | 1.36 | 0.70 | 0.83 | 4.00 | 29503 | 3788 | 15 | 0 | 3 | 0 | 0 | logfile |
✔ | 7XJG | 33226 | 2023-08-13 | 2022-04-17 | 2.51 | 2.02 | 2.63 | 1.6 | 0.005 | 0.71 | 0.0 | 0.05 | 22.26 | 0.01 | 1.962 | 7.64 | 3.44 | 4.1 | 95.9 | 0.0 | -0.23 | 0.76 | 0.76 | 2.80 | 1.6 | 0.004 | 0.57 | 0.0 | 0.04 | 21.98 | 0.00 | 2.113 | 7.40 | 4.28 | 3.9 | 96.1 | 0.0 | 0.70 | 0.25 | 0.79 | 0.79 | 2.46 | 13167 | 1066 | 12 | 216 | 2 | 0 | 0 | logfile |
✔ | 7P0Z | 13153 | 2023-08-12 | 2021-07-01 | 2.43 | 2.02 | 2.41 | 2.2 | 0.016 | 0.94 | 0.0 | 0.06 | 14.02 | 0.01 | 2.141 | 7.29 | 0.00 | 4.3 | 95.7 | 0.0 | 1.90 | 0.83 | 0.86 | 2.91 | 2.3 | 0.002 | 0.49 | 0.0 | 0.03 | 18.12 | 0.00 | 2.239 | 4.38 | 1.64 | 0.7 | 99.3 | 0.0 | 5.47 | 0.55 | 0.84 | 0.87 | 2.18 | 12873 | 1652 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TJQ | 25929 | 2023-08-21 | 2022-01-16 | 3.13 | 2.03 | — | 2.0 | 0.004 | 0.77 | 0.0 | 0.05 | 13.25 | 0.01 | 2.288 | 1.08 | 1.03 | 4.5 | 95.5 | 0.0 | -0.55 | 0.75 | 0.75 | 3.94 | 2.0 | 0.007 | 0.72 | 0.0 | 0.05 | 15.36 | 0.00 | 2.157 | 9.61 | 0.40 | 3.3 | 96.7 | 0.0 | -0.33 | 0.94 | 0.75 | 0.79 | 3.15 | 20538 | 2679 | 21 | 0 | 12 | 0 | 0 | logfile |
✔ | 8FoZ | 29357 | 2023-08-17 | 2023-01-03 | 2.0 | 2.03 | 2.09 | 2.0 | 0.009 | 0.91 | 0.0 | 0.06 | 15.66 | 0.01 | 2.238 | 2.94 | 1.31 | 0.5 | 99.5 | 0.0 | 0.22 | 0.80 | 0.91 | 7.15 | 2.0 | 0.003 | 0.56 | 0.0 | 0.04 | 15.87 | 0.00 | 2.255 | 2.90 | 1.35 | 0.8 | 99.2 | 0.0 | 0.61 | 0.87 | 0.79 | 0.91 | 7.08 | 23648 | 3072 | 16 | 0 | 16 | 0 | 0 | logfile |
✔ | 7QKL | 14046 | 2023-08-09 | 2021-12-17 | 2.07 | 2.04 | 1.98 | 2.0 | 0.011 | 2.37 | 0.0 | 0.25 | 12.79 | 0.01 | 2.537 | 0.14 | 0.00 | 3.6 | 96.4 | 0.0 | -1.75 | 0.40 | 0.83 | 7.75 | 2.0 | 0.003 | 0.62 | 0.0 | 0.05 | 17.01 | 0.00 | 2.552 | 3.25 | 0.25 | 2.7 | 97.3 | 0.0 | -1.29 | 2.03 | 0.44 | 0.91 | 7.62 | 3468 | 456 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8AG4 | 15415 | 2023-08-12 | 2022-07-19 | 2.46 | 2.04 | 2.48 | 1.7 | 0.003 | 0.49 | 0.0 | 0.04 | 13.59 | 0.00 | 2.170 | 5.34 | 0.00 | 3.9 | 96.1 | 0.0 | 0.77 | 0.82 | 0.83 | 4.04 | 1.7 | 0.003 | 0.50 | 0.0 | 0.04 | 15.81 | 0.00 | 2.166 | 5.88 | 0.87 | 3.4 | 96.6 | 0.0 | 0.91 | 0.31 | 0.81 | 0.83 | 3.66 | 11155 | 1384 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZGo | 14709 | 2023-08-10 | 2022-04-04 | 2.55 | 2.04 | 2.53 | 2.6 | 0.008 | 1.24 | 0.0 | 0.06 | 16.84 | 0.00 | 2.170 | 9.40 | 0.00 | 3.4 | 96.6 | 0.0 | 1.35 | 0.50 | 0.76 | 3.14 | 2.6 | 0.002 | 0.50 | 0.0 | 0.04 | 16.48 | 0.00 | 2.254 | 8.96 | 0.52 | 3.1 | 96.9 | 0.0 | 2.18 | 1.09 | 0.53 | 0.79 | 3.51 | 7754 | 940 | 6 | 0 | 21 | 24 | 0 | logfile |
✔ | 5A1A | 2984 | 2023-08-22 | 2015-04-29 | 2.2 | 2.04 | 2.58 | 2.5 | 0.009 | 1.21 | 0.0 | 0.04 | 13.15 | 0.01 | 0.020 | 14.13 | 1.03 | 3.9 | 95.5 | 0.6 | -1.86 | 0.53 | 0.76 | 4.20 | 2.5 | 0.003 | 0.66 | 0.0 | 0.04 | 17.63 | 0.00 | 1.961 | 10.92 | 2.75 | 2.3 | 97.6 | 0.1 | -0.56 | 1.09 | 0.53 | 0.79 | 3.86 | 33696 | 4088 | 12 | 0 | 20 | 776 | 0 | logfile |
✔ | 7VDA | 31912 | 2023-08-17 | 2021-09-06 | 2.26 | 2.04 | 2.42 | 2.1 | 0.003 | 0.53 | 0.0 | 0.04 | 17.67 | 0.00 | 2.142 | 7.99 | 2.20 | 2.6 | 97.4 | 0.0 | 1.67 | 0.66 | 0.82 | 4.06 | 2.0 | 0.002 | 0.54 | 0.0 | 0.04 | 18.07 | 0.00 | 2.051 | 8.99 | 2.60 | 2.1 | 97.9 | 0.0 | 1.12 | 0.41 | 0.66 | 0.84 | 4.19 | 23292 | 2976 | 6 | 0 | 0 | 0 | 0 | logfile |