Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6UDJ	20739	2021-09-04	2019-09-19	2.5	2.60	2.46	2.6	0.010	1.02	0.0	0.06	13.38	0.01	2.252	3.07	0.41	4.1	95.8	0.1	-1.93	0.71	0.85	4.78	2.6	0.005	0.71	0.0	0.05	15.47	0.00	1.987	6.56	2.44	3.7	96.3	0.0	-0.17	0.43	0.71	0.86	4.58	26592	3090	30	0	177	45	0	logfile
✔	7Ki1	22883	2021-09-03	2020-10-22	2.5	2.57	2.46	2.6	0.008	0.94	0.0	0.06	15.56	0.00	2.257	8.06	0.28	3.5	96.5	0.0	-1.64	0.64	0.81	3.96	2.6	0.005	0.61	0.0	0.04	16.82	0.00	2.138	5.77	1.48	2.1	97.9	0.0	1.00	0.53	0.65	0.84	3.76	10265	1285	11	0	1	73	0	logfile
✔	6YSi	10898	2021-09-05	2020-04-22	2.5	2.64	2.46	2.6	0.014	0.90	0.0	0.06	15.44	0.01	1.839	5.87	5.75	4.5	95.4	0.1	-2.34	0.83	0.88	3.75	2.6	0.006	0.75	0.0	0.04	15.62	0.01	1.623	7.13	3.30	4.5	95.5	0.1	-1.41	1.08	0.83	0.89	3.67	83855	3112	35	2800	166	0	0	logfile
✔	6YNX	10859	2021-09-06	2020-04-14	2.5	2.72	2.48	2.6	0.035	1.26	0.0	0.29	13.54	0.01	1.374	3.40	0.30	2.3	97.7	0.0	-2.86	0.73	0.89	5.87	2.6	0.003	0.75	0.0	0.04	15.82	0.00	1.297	7.24	0.67	3.0	97.0	0.0	1.25	1.06	0.74	0.90	4.81	134171	7929	64	0	50	0	64331	logfile
✔	6L3U	0826	2021-09-04	2019-10-15	2.53	2.59	2.48	2.6	0.012	0.95	0.0	0.05	17.70	0.01	2.206	0.45	3.01	1.9	98.1	0.0	-2.86	0.64	0.84	4.02	2.6	0.003	0.58	0.0	0.03	16.90	0.00	1.958	1.55	1.31	0.4	99.6	0.0	2.52	0.94	0.64	0.85	2.97	19698	1206	18	0	12	174	9588	logfile
✔	7AAP	11692	2021-09-02	2020-09-04	2.5	2.71	2.48	2.8	0.006	0.53	0.0	0.04	12.44	0.00	2.097	3.69	0.20	1.5	98.5	0.0	0.59	0.79	0.87	4.74	2.7	0.006	0.64	0.0	0.05	14.65	0.00	2.130	6.13	1.01	2.4	97.6	0.0	0.31	0.84	0.81	0.90	4.43	9446	1120	9	21	7	0	0	logfile
✔	7M05	23609	2021-09-03	2021-03-10	2.39	2.66	2.49	2.6	0.013	1.02	0.0	0.06	14.78	0.01	2.064	3.55	0.50	6.9	92.3	0.8	-3.01	0.75	0.81	4.52	2.6	0.003	0.60	0.0	0.05	16.34	0.00	2.057	2.50	0.97	3.0	96.9	0.1	0.43	1.29	0.79	0.84	3.93	57152	3636	12	0	4	0	28188	logfile
✔	7MBY	23750	2021-09-02	2021-04-01	2.44	3.24	2.49	3.1	0.015	1.26	1.0	0.16	12.85	0.01	2.280	4.92	0.00	1.7	98.3	0.0	-1.45	0.58	0.68	2.19	3.1	0.004	0.80	0.0	0.04	15.50	0.00	2.137	18.35	1.67	4.0	96.0	0.0	0.53	1.24	0.60	0.72	1.37	6881	891	6	0	2	0	0	logfile
✔	7JLW	22382	2021-09-06	2020-07-30	2.5	2.52	2.49	2.5	0.009	1.07	0.0	0.07	15.06	0.00	2.377	3.99	1.14	1.1	98.9	0.0	0.51	0.62	0.82	4.64	2.5	0.003	0.51	0.0	0.04	15.79	0.00	2.042	6.09	1.42	0.7	99.3	0.0	3.05	1.01	0.66	0.85	4.04	40284	2316	36	0	132	204	18720	logfile
✔	6X1A	21994	2021-09-03	2020-05-18	2.5	1.99	2.50	2.6	0.006	1.07	0.0	0.15	15.90	0.00	2.140	14.01	3.79	3.9	96.1	0.0	-3.15	0.51	0.71	2.96	2.5	0.017	1.31	1.0	0.04	17.45	0.01	2.071	9.36	3.60	2.9	97.1	0.0	-0.19	1.02	0.53	0.73	2.70	10140	1262	5	0	1	23	0	logfile
✔	6LMT	0919	2021-09-03	2019-12-26	2.66	2.77	2.50	2.7	0.047	3.27	0.0	0.53	17.46	0.01	2.409	4.14	0.00	2.4	97.6	0.0	-4.48	0.52	0.74	5.03	2.7	0.003	0.86	0.0	0.05	16.50	0.00	2.331	21.28	1.17	2.0	98.0	0.0	2.39	0.62	0.72	0.88	3.32	17552	2032	16	0	32	0	0	logfile
✔	7NVU	12613	2021-09-06	2021-03-16	2.5	2.73	2.50	2.7	0.003	0.46	0.0	0.04	15.43	0.00	1.889	3.84	0.00	2.6	97.4	0.0	1.41	0.78	0.83	3.63	2.7	0.004	0.61	0.0	0.04	18.05	0.00	1.977	9.56	1.09	2.7	97.3	0.0	0.71	0.60	0.77	0.85	3.20	44240	5295	30	90	11	0	0	logfile
✔	7M5E	23674	2021-09-05	2021-03-23	2.5	2.97	2.51	2.9	0.017	1.43	3.0	0.10	11.29	0.01	2.433	1.11	0.20	1.8	98.1	0.1	0.59	0.78	0.82	5.49	2.9	0.004	0.75	3.0	0.04	14.49	0.00	2.149	5.76	1.29	1.8	98.2	0.0	0.48	0.53	0.70	0.82	4.52	28566	3477	36	0	135	0	0	logfile
✔	6E0P	8949	2021-09-03	2018-07-06	2.6	2.80	2.51	2.7	0.007	0.85	0.0	0.05	25.48	0.01	2.253	2.30	0.00	4.8	95.2	0.0	-2.18	0.79	0.86	4.43	2.7	0.003	0.63	0.0	0.03	27.04	0.00	2.078	7.74	1.36	4.0	96.0	0.0	1.47	1.14	0.80	0.88	3.29	15567	1220	12	290	0	0	0	logfile
✔	6SZV	10355	2021-09-03	2019-10-02	2.5	2.59	2.51	2.6	0.007	0.61	0.0	0.04	13.05	0.01	1.763	3.79	3.65	4.6	95.3	0.1	-2.79	0.68	0.85	4.62	2.6	0.002	0.51	0.0	0.04	16.31	0.00	2.001	6.68	2.39	1.5	98.5	0.0	0.98	0.99	0.72	0.88	4.22	14847	1694	15	41	7	217	0	logfile
✔	6VPS	21316	2021-09-02	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.89	6.11	2.7	0.002	0.48	0.0	0.03	19.69	0.00	2.391	3.50	1.63	6.9	93.1	0.0	-3.67	1.20	0.47	0.87	6.71	2736	279	9	0	0	0	0	logfile
✔	6TJX	10514	2021-09-02	2019-11-27	3.0	3.21	2.52	3.4	0.011	1.10	0.0	0.07	9.93	0.01	2.312	4.11	0.00	4.8	95.2	0.0	-3.93	0.43	0.79	4.74	3.3	0.005	0.81	0.0	0.06	14.84	0.00	2.382	8.01	4.79	6.3	93.7	0.0	-3.41	2.50	0.41	0.81	3.75	4878	642	6	0	0	0	0	logfile
✔	7L6Q	23207	2021-09-03	2020-12-23	2.5	2.32	2.53	2.2	0.015	1.35	0.0	0.30	16.39	0.00	2.227	5.23	3.96	8.1	91.9	0.0	-1.94	0.82	0.83	4.88	2.2	0.004	0.67	0.0	0.05	16.73	0.00	2.127	5.38	3.60	6.3	93.7	0.0	0.64	1.19	0.82	0.83	4.65	13330	1555	10	0	10	0	0	logfile
✔	7JWY	22515	2021-09-04	2020-08-26	2.5	2.64	2.53	2.6	0.011	1.17	0.0	0.07	13.71	0.01	2.248	2.44	0.11	6.1	93.9	0.0	-2.72	0.75	0.83	3.94	2.6	0.007	0.86	1.0	0.05	15.10	0.00	2.155	4.10	0.65	3.4	96.6	0.0	-0.19	0.42	0.76	0.88	3.28	25860	3178	26	0	64	119	0	logfile
✘	7CoY	30420	2021-09-03	2020-08-05	2.5	2.41	2.54	2.5	0.017	1.67	5.0	0.10	14.18	0.01	1.106	11.43	0.90	5.6	94.3	0.1	-3.23	0.57	0.80	3.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	57966	6096	66	0	279	84	0	logfile

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