Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7P6A	13223	2023-02-17	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.003	0.65	0.0	0.05	14.15	0.00	2.293	4.99	0.00	4.7	95.3	0.0	-2.61	0.38	0.55	0.89	7.74	4166	540	10	0	0	76	0	logfile
✔	8E9Y	27968	2023-02-18	2022-08-27	2.79	2.12	2.79	1.9	0.005	0.81	0.0	0.05	13.31	0.00	2.217	12.56	0.12	5.2	94.8	0.0	-1.06	0.76	0.75	3.19	1.9	0.003	0.59	0.0	0.04	15.56	0.00	2.203	9.60	1.73	4.1	95.8	0.1	-0.25	0.36	0.76	0.76	2.63	8479	1123	6	0	1	0	0	logfile
✔	7WiC	32528	2023-02-19	2022-01-03	2.8	2.21	—	1.9	0.005	0.62	0.0	0.05	12.93	0.00	2.176	7.87	0.00	2.7	97.3	0.0	0.61	0.76	0.76	3.53	1.9	0.003	0.58	0.0	0.04	15.57	0.00	2.173	7.26	1.11	3.1	96.9	0.0	1.17	0.37	0.78	0.80	3.11	9048	1158	6	0	0	0	0	logfile
✔	7S8o	24899	2023-02-18	2021-09-18	2.58	2.12	2.59	1.9	0.007	0.72	0.0	0.05	13.18	0.00	2.102	3.18	0.00	5.8	94.2	0.0	0.31	0.81	0.80	4.50	1.9	0.002	0.53	0.0	0.04	15.63	0.00	2.207	3.18	0.92	4.4	95.6	0.0	1.05	0.40	0.83	0.83	3.24	8331	1101	6	0	1	0	0	logfile
✔	7SC8	25029	2023-02-22	2021-09-27	2.1	2.19	2.13	1.9	0.008	1.12	10.0	0.07	15.00	0.01	2.102	5.20	0.38	1.0	99.0	0.0	2.13	0.82	0.79	4.35	1.9	0.004	0.57	0.0	0.04	16.48	0.00	2.130	8.45	0.93	1.1	98.9	0.0	2.82	0.36	0.86	0.87	4.19	56784	6836	116	0	54	2672	0	logfile
✔	7RZV	24779	2023-02-16	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.37	0.0	0.03	15.99	0.00	2.228	4.86	0.67	0.0	100.0	0.0	5.66	0.87	0.83	0.83	1.88	2562	339	6	0	0	0	0	logfile
✔	7UWJ	26833	2023-02-17	2022-05-03	3.2	2.38	3.23	2.0	0.004	0.78	1.0	0.05	12.97	0.01	2.189	11.24	0.00	4.1	95.9	0.0	-2.14	0.66	0.61	2.04	2.0	0.003	0.63	0.0	0.04	14.92	0.00	2.228	10.10	0.33	4.7	95.3	0.0	-1.88	0.44	0.67	0.64	1.81	5314	664	6	0	6	0	0	logfile
✔	7VUG	32127	2023-02-19	2021-11-02	3.2	2.20	—	2.0	0.004	0.61	0.0	0.04	13.57	0.00	2.099	11.88	0.00	6.3	93.7	0.0	-0.75	0.73	0.72	2.48	2.0	0.004	0.64	0.0	0.04	15.83	0.00	1.991	12.95	0.20	5.5	94.5	0.0	-0.68	0.34	0.73	0.74	2.08	8924	1127	6	0	1	0	0	logfile
✔	7KUE	23036	2023-02-17	2020-11-24	3.5	2.53	3.43	2.0	0.010	1.62	3.0	0.11	15.46	0.01	2.205	5.62	0.78	8.4	91.6	0.0	-4.55	0.71	0.69	2.12	2.1	0.003	0.76	0.0	0.05	17.07	0.01	2.229	12.94	0.97	8.0	92.0	0.0	-2.24	1.31	0.72	0.71	1.71	4726	577	4	0	2	0	0	logfile
✔	7EQ1	31254	2023-02-18	2021-04-28	3.3	2.26	—	2.0	0.003	0.58	0.0	0.04	13.83	0.00	2.113	10.24	0.00	6.5	93.5	0.0	-0.59	0.75	0.74	3.06	2.0	0.003	0.60	0.0	0.04	15.98	0.00	2.091	10.91	0.41	6.0	94.0	0.0	-0.11	0.31	0.75	0.77	2.68	8999	1150	5	0	0	0	0	logfile
✔	7EiB	31145	2023-02-18	2021-03-30	3.0	2.24	—	2.0	0.005	0.86	0.0	0.05	12.65	0.01	2.306	3.38	0.27	2.0	98.0	0.0	-0.34	0.74	0.75	3.17	2.0	0.004	0.65	0.0	0.04	16.05	0.00	2.132	10.34	2.02	2.4	97.6	0.0	1.21	1.20	0.74	0.77	1.90	7204	928	5	0	0	0	0	logfile
✔	7TiK	25912	2023-02-16	2022-01-13	2.4	2.38	—	2.0	0.007	0.49	0.0	0.04	16.31	0.00	2.218	7.94	0.00	4.6	95.4	0.0	1.31	0.77	0.80	1.31	2.0	0.003	0.50	0.0	0.04	16.49	0.00	2.245	8.91	1.01	0.6	99.4	0.0	5.53	0.94	0.78	0.80	1.16	2565	339	6	0	0	0	0	logfile
✔	7VXi	32180	2023-02-25	2021-11-12	3.4	2.35	—	2.0	0.002	0.49	0.0	0.04	7.29	0.00	2.125	3.01	0.00	4.3	95.5	0.1	-1.83	0.65	0.60	1.83	2.1	0.003	0.64	0.0	0.04	13.57	0.00	2.129	9.76	0.33	3.3	96.5	0.2	0.10	1.42	0.71	0.69	2.31	24570	3144	3	0	0	0	0	logfile
✔	7WY0	32883	2023-02-18	2022-02-15	2.83	2.21	—	2.0	0.007	0.87	0.0	0.06	11.98	0.00	1.690	7.73	0.00	6.2	93.8	0.0	-1.00	0.74	0.73	3.63	2.0	0.004	0.68	0.0	0.04	15.36	0.00	2.124	12.48	1.97	5.3	94.7	0.0	0.15	0.47	0.75	0.75	2.68	8723	1112	5	0	0	0	0	logfile
✔	7UQX	26701	2023-02-19	2022-04-20	3.3	2.35	3.18	2.0	0.002	0.50	0.0	0.04	10.15	0.00	1.752	9.27	0.19	3.3	96.7	0.0	0.26	0.74	0.71	2.97	1.9	0.003	0.61	0.0	0.04	14.05	0.00	2.149	12.36	0.29	4.0	96.0	0.0	0.03	0.95	0.74	0.75	2.83	9491	1154	5	2	5	0	0	logfile
✔	8DPH	27635	2023-02-18	2022-07-15	3.2	2.17	3.15	2.0	0.005	0.59	0.0	0.05	9.34	0.00	2.162	2.82	0.73	1.4	98.6	0.0	1.66	0.76	0.73	2.48	2.1	0.003	0.62	0.0	0.04	14.05	0.00	2.202	5.07	0.24	2.8	97.2	0.0	1.06	1.06	0.78	0.77	2.24	8182	1093	6	0	3	0	0	logfile
✔	8AG3	15414	2023-02-16	2022-07-19	3.47	2.17	3.26	2.0	0.002	0.60	0.0	0.04	17.16	0.01	2.143	8.90	0.00	6.6	93.4	0.0	-1.45	0.61	0.73	3.03	2.0	0.003	0.64	0.0	0.05	17.42	0.00	2.092	9.28	1.95	7.5	92.5	0.0	-1.11	0.33	0.63	0.77	2.96	2632	322	2	0	0	0	0	logfile
✔	7JVR	22511	2023-02-18	2020-08-22	2.8	2.21	—	2.0	0.012	0.93	0.0	0.05	8.66	0.01	2.235	4.70	0.00	2.8	97.2	0.0	-0.85	0.74	0.74	2.70	2.1	0.003	0.73	0.0	0.04	14.58	0.00	2.052	14.20	2.88	2.5	97.5	0.0	0.57	0.66	0.75	0.77	2.68	8872	1126	6	0	1	0	0	logfile
✔	7RZR	24775	2023-02-16	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.002	0.36	0.0	0.03	15.29	0.00	2.294	4.44	0.71	0.0	100.0	0.0	6.53	0.31	0.81	0.83	3.42	2448	324	6	0	0	0	0	logfile
✔	7WZ7	32905	2023-02-18	2022-02-17	2.83	2.26	—	2.0	0.010	0.95	0.0	0.06	11.50	0.01	2.230	6.56	0.00	5.4	94.6	0.0	-0.69	0.71	0.71	2.86	2.0	0.004	0.68	0.0	0.04	14.95	0.00	2.140	12.43	2.31	4.3	95.7	0.0	0.40	1.18	0.72	0.73	1.49	8676	1108	5	0	0	0	0	logfile

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