Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8F8Q	28933	2023-11-18	2022-11-22	2.79	2.16	2.84	1.8	0.004	0.69	0.0	0.05	14.38	0.01	2.072	3.55	3.93	3.1	96.9	0.0	-0.96	0.80	0.83	3.55	1.8	0.008	0.75	0.0	0.05	17.09	0.01	1.807	8.18	3.00	4.4	95.6	0.0	0.11	0.38	0.80	0.84	3.34	22006	2778	14	0	12	0	0	logfile
✔	7M3G	23654	2023-11-15	2021-03-18	2.5	2.29	—	1.8	0.014	0.96	0.0	0.06	17.07	0.01	2.281	2.21	0.93	3.0	97.0	0.0	-2.02	0.84	0.85	3.70	1.8	0.003	0.59	0.0	0.04	17.55	0.00	2.171	4.46	2.43	3.7	96.3	0.0	-0.23	0.33	0.85	0.87	3.51	13298	1627	11	0	41	0	0	logfile
✔	8CGU	16651	2023-11-21	2023-02-06	1.89	1.60	1.82	1.8	0.009	1.59	1.0	0.11	13.35	0.02	1.895	0.38	0.38	2.4	97.6	0.0	-0.61	0.60	0.81	6.95	1.8	0.003	0.65	0.0	0.04	13.59	0.01	1.845	5.16	0.58	1.8	98.2	0.0	1.19	2.29	0.70	0.87	6.09	35196	1266	31	1078	87	1871	0	logfile
✔	7VD9	31911	2023-11-16	2021-09-06	2.29	1.75	2.28	1.8	0.002	0.54	0.0	0.04	17.25	0.00	2.194	7.80	2.33	3.8	96.2	0.0	0.41	0.58	0.72	3.68	1.8	0.003	0.57	0.0	0.04	17.52	0.01	2.206	7.90	2.62	3.9	96.1	0.0	0.00	0.30	0.58	0.73	3.61	16426	1991	8	0	8	0	0	logfile
✔	7Z1Z	14453	2023-11-21	2022-02-25	3.5	2.62	3.61	1.8	0.002	0.51	0.0	0.04	15.15	0.00	2.224	7.50	0.00	2.4	97.6	0.0	0.26	0.64	0.65	1.09	1.7	0.003	0.78	0.0	0.05	18.27	0.00	1.546	14.15	0.34	3.8	96.2	0.0	0.01	0.75	0.68	0.68	1.65	35605	4031	36	140	12	0	0	logfile
✔	7UUR	26801	2023-11-16	2022-04-28	1.67	1.76	1.67	1.8	0.061	2.45	3.0	0.98	14.57	0.01	1.674	7.19	0.44	2.5	97.2	0.2	-0.89	0.76	0.87	7.87	1.8	0.007	2.49	0.0	0.07	14.70	0.01	1.611	10.87	0.29	2.1	97.9	0.0	0.19	0.27	0.77	0.88	7.79	13683	1668	12	0	18	603	0	logfile
✔	7C7S	30301	2023-11-15	2020-05-26	2.9	2.38	—	1.8	0.006	0.78	0.0	0.14	13.57	0.01	2.153	7.86	0.00	3.7	96.3	0.0	-2.62	0.83	0.80	2.82	1.8	0.003	0.72	0.0	0.04	15.76	0.00	2.169	9.50	3.22	4.0	96.0	0.0	-0.15	0.59	0.84	0.83	2.54	10915	1355	4	0	9	0	0	logfile
✔	8DWG	27753	2023-11-14	2022-08-01	2.71	2.08	2.72	1.8	0.006	0.64	0.0	0.05	12.61	0.00	2.106	6.68	0.00	4.5	95.5	0.0	-1.14	0.78	0.81	4.92	1.8	0.005	0.63	0.0	0.04	15.14	0.00	2.082	6.68	1.52	5.0	95.0	0.0	0.71	0.32	0.80	0.84	3.67	8350	1101	7	0	1	0	0	logfile
✘	7UFM	26477	2023-11-22	2022-03-22	3.9	2.97	4.04	1.8	0.009	1.77	14.0	0.08	22.53	0.01	1.075	9.26	24.41	11.0	89.0	0.0	-4.66	0.68	0.65	0.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36392	4354	30	72	14	0	0	logfile
✔	8CPT	16785	2023-11-21	2023-03-03	1.79	1.72	1.81	1.8	0.004	0.72	0.0	0.05	15.65	0.01	2.157	1.26	0.49	1.0	99.0	0.0	2.30	0.80	0.85	8.36	1.8	0.003	0.58	0.0	0.04	16.07	0.00	2.206	1.20	0.65	1.8	98.2	0.0	4.32	0.33	0.81	0.87	8.14	36024	4152	72	0	38	1906	0	logfile
✔	7XW9	33494	2023-11-14	2022-05-26	2.7	2.10	2.82	1.8	0.012	0.69	0.0	0.05	12.26	0.01	2.167	6.26	0.00	3.5	96.5	0.0	0.37	0.78	0.77	3.77	1.8	0.004	0.62	0.0	0.05	15.35	0.00	2.160	7.37	2.14	3.6	96.4	0.0	0.95	0.36	0.80	0.80	3.56	8988	1143	6	0	1	0	0	logfile
✔	8HKK	34853	2023-11-20	2022-11-27	2.84	2.16	2.96	1.8	0.012	1.19	8.0	0.05	16.14	0.01	1.710	12.44	0.92	2.1	97.8	0.1	-0.41	0.79	0.82	3.56	1.8	0.004	0.66	0.0	0.04	16.92	0.00	2.077	9.28	2.99	2.9	96.9	0.1	1.15	0.57	0.79	0.82	3.80	28687	3596	8	0	23	0	0	logfile
✔	7WiG	32529	2023-11-14	2022-01-03	2.7	2.14	—	1.8	0.006	0.75	0.0	0.05	13.13	0.01	2.192	6.75	0.00	2.0	98.0	0.0	1.11	0.78	0.77	3.19	1.8	0.002	0.90	0.0	0.04	15.48	0.00	2.195	5.51	1.13	2.0	98.0	0.0	1.42	0.33	0.79	0.80	2.94	8931	1139	6	0	1	0	0	logfile
✘	7X28	32961	2023-11-22	2022-02-25	2.49	2.72	—	1.8	0.013	1.52	5.0	0.11	13.24	0.00	1.606	7.72	7.98	2.7	97.0	0.2	2.21	0.57	0.40	0.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31583	4119	7	0	0	0	0	logfile
✔	7S8P	24900	2023-11-14	2021-09-18	2.6	2.11	2.62	1.8	0.005	0.75	0.0	0.05	12.81	0.00	2.183	3.18	0.00	5.8	94.2	0.0	-2.01	0.73	0.75	4.73	1.8	0.004	0.67	0.0	0.04	15.58	0.00	2.121	3.18	2.61	5.4	94.6	0.0	0.13	0.36	0.84	0.84	3.71	8093	1089	5	0	1	0	0	logfile
✔	8P5X	17456	2023-11-14	2023-05-24	2.29	2.20	2.36	1.9	0.013	1.76	0.0	0.09	14.15	0.00	2.250	0.66	0.21	3.1	96.9	0.0	-1.93	0.89	0.90	4.98	2.0	0.003	0.54	0.0	0.04	16.33	0.00	2.003	2.59	0.51	2.1	97.9	0.0	0.77	0.42	0.87	0.88	4.28	55346	7110	18	0	12	0	0	logfile
✔	7UM6	26598	2023-11-14	2022-04-06	2.79	2.13	2.81	1.9	0.012	0.64	0.0	0.04	11.24	0.00	2.359	2.38	0.12	3.8	96.2	0.0	-0.54	0.82	0.81	4.30	1.9	0.004	0.67	0.0	0.04	14.29	0.00	2.244	4.14	1.69	3.4	96.6	0.0	0.55	0.38	0.83	0.83	3.47	8175	1094	6	0	1	0	0	logfile
✔	8P5U	17453	2023-11-13	2023-05-24	2.17	2.20	2.21	1.9	0.032	1.60	0.0	0.08	15.06	0.01	1.601	3.66	0.31	3.0	97.0	0.0	-1.97	0.91	0.92	5.23	1.9	0.004	0.58	0.0	0.04	17.05	0.00	1.953	4.75	0.78	2.4	97.6	0.0	0.91	0.40	0.89	0.89	4.37	52878	6714	12	0	24	0	0	logfile
✔	7SRQ	25401	2023-11-13	2021-11-08	2.7	2.17	—	1.9	0.008	0.80	0.0	0.05	13.54	0.01	2.296	8.67	1.50	2.8	97.2	0.0	0.29	0.70	0.72	4.55	2.7	0.004	0.76	0.0	0.04	15.44	0.00	2.264	8.93	3.50	3.2	96.8	0.0	0.20	0.48	0.72	0.77	3.78	1960	254	1	0	2	0	0	logfile
✔	7VZ4	32220	2023-11-15	2021-11-15	1.89	1.72	—	1.9	0.010	1.17	0.0	0.08	29.00	0.00	2.167	2.63	0.97	1.6	98.4	0.0	0.11	0.75	0.82	7.08	1.9	0.005	0.70	0.0	0.04	28.42	0.01	2.320	4.08	0.49	0.5	99.5	0.0	2.76	0.80	0.78	0.86	7.64	11843	746	10	290	0	0	0	logfile

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