Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5GAM	8011	2023-02-23	2015-12-15	3.7	4.03	—	3.9	0.008	1.49	11.0	0.10	19.79	0.01	1.976	11.76	6.60	10.0	88.2	1.8	-2.90	0.72	0.57	1.24	3.9	0.004	0.88	0.0	0.05	18.91	0.01	2.099	17.67	0.49	6.9	92.9	0.2	-1.12	1.70	0.80	0.79	1.10	19123	2002	13	166	19	0	0	logfile
✔	5GAP	8014	2023-02-27	2015-12-15	3.6	3.65	—	3.6	0.008	1.51	26.0	0.09	17.39	0.01	2.143	7.18	4.23	8.8	89.7	1.5	-1.15	0.48	0.48	1.61	3.6	0.003	0.75	0.0	0.04	17.58	0.00	2.074	14.43	0.49	5.0	94.9	0.1	0.53	2.22	0.66	0.78	1.17	31576	3503	12	143	82	0	0	logfile
✔	3JCL	6526	2023-02-25	2015-12-21	4.0	4.03	—	4.0	0.018	1.83	9.0	0.09	9.75	0.01	2.379	2.74	0.00	5.2	94.3	0.6	-0.72	0.71	0.74	—	4.0	0.003	0.74	0.0	0.04	14.59	0.00	2.114	12.67	0.44	7.2	92.7	0.1	-0.57	1.77	0.70	0.70	—	24822	3201	3	0	0	0	0	logfile
✔	5GAQ	8015	2023-02-23	2016-01-05	3.1	3.36	—	3.2	0.006	1.01	0.0	0.08	11.97	0.00	2.289	1.94	0.80	7.3	92.7	0.0	-3.69	0.56	0.50	3.88	3.2	0.006	0.66	0.0	0.05	16.40	0.00	2.147	14.03	0.84	3.8	96.2	0.0	-1.76	1.64	0.78	0.84	3.64	20574	2592	9	0	0	0	0	logfile
✔	5Hi9	6580	2023-02-23	2016-01-11	4.4	4.53	—	4.4	0.009	1.46	20.0	0.09	13.13	0.01	2.033	23.50	0.93	7.7	91.4	0.8	-4.25	0.73	0.73	—	4.4	0.003	0.83	0.0	0.04	13.58	0.00	2.108	18.66	0.00	8.1	91.9	0.0	-1.85	2.49	0.76	0.78	—	19636	2408	4	0	0	0	0	logfile
✔	5FUU	3308	2023-02-23	2016-01-29	4.19	4.30	—	4.2	0.013	1.78	3.0	0.11	10.98	0.02	1.862	17.37	1.20	6.2	92.2	1.7	-2.38	0.69	0.72	—	4.2	0.003	0.80	0.0	0.05	12.32	0.00	2.131	13.32	0.10	6.5	93.0	0.5	-1.32	0.96	0.77	0.83	—	20735	2281	70	0	213	0	0	logfile
✔	5i08	8069	2023-02-24	2016-02-03	4.04	4.14	3.96	4.1	0.014	1.74	3.0	0.09	8.79	0.01	2.174	3.14	0.00	7.0	92.1	0.8	0.56	0.70	0.71	—	4.1	0.004	0.82	0.0	0.04	12.40	0.01	2.154	10.44	0.08	10.5	88.9	0.6	-1.62	1.62	0.74	0.80	—	22683	2874	3	0	0	0	0	logfile
✔	5FWK	3337	2023-02-25	2016-02-17	3.9	3.97	—	3.9	0.016	1.31	0.0	0.07	9.60	0.01	1.173	2.17	0.00	4.0	95.5	0.5	-0.44	0.77	0.77	1.55	3.9	0.003	0.62	0.0	0.04	14.82	0.00	1.821	11.16	0.28	5.7	94.3	0.0	-0.14	1.24	0.77	0.77	1.68	26221	1612	6	0	4	0	13109	logfile
✔	5iRX	8117	2023-02-21	2016-03-14	2.95	3.39	2.91	3.3	0.014	1.44	0.0	0.07	15.36	0.01	1.744	9.65	0.00	10.7	89.2	0.1	-6.45	0.67	0.77	3.80	3.4	0.004	0.73	0.0	0.04	16.65	0.00	2.241	8.73	1.73	8.2	91.8	0.0	-0.58	0.68	0.62	0.82	1.93	13162	1726	12	0	20	0	0	logfile
✔	5iRZ	8118	2023-02-20	2016-03-15	3.28	3.63	3.24	3.5	0.010	1.31	0.0	0.23	16.19	0.00	2.008	9.02	0.00	7.5	92.5	0.0	-5.78	0.68	0.77	4.48	3.5	0.003	0.61	0.0	0.04	15.99	0.00	2.158	8.90	0.28	7.1	92.9	0.0	0.91	0.68	0.65	0.84	2.94	12504	1576	8	0	24	0	0	logfile
✘	5iS0	8119	2023-02-20	2016-03-15	3.43	3.36	3.37	3.2	0.015	1.24	0.0	0.06	10.52	0.01	1.283	5.42	0.00	10.1	89.7	0.3	-5.27	0.63	0.73	2.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11808	1576	8	0	4	0	0	logfile
✔	5G04	3385	2023-02-24	2016-03-16	3.9	3.86	—	3.8	0.019	1.88	181.0	0.13	19.17	0.01	1.629	17.64	13.63	6.3	91.5	2.2	-2.36	0.78	0.65	0.91	3.8	0.007	0.89	0.0	0.04	18.04	0.00	2.027	17.51	0.51	5.6	93.8	0.6	0.15	1.73	0.83	0.76	0.66	65481	8322	22	0	3	0	0	logfile
✔	5G05	3388	2023-02-24	2016-03-16	3.4	3.84	—	3.5	0.016	1.81	55.0	0.10	18.98	0.01	0.612	56.68	17.76	4.5	93.6	1.8	-0.14	0.85	0.76	1.42	3.5	0.003	0.86	0.0	0.04	17.35	0.00	2.093	16.19	0.38	4.8	94.7	0.5	0.66	3.20	0.89	0.84	1.24	63181	8027	21	0	3	0	0	logfile
✔	5G06	3366	2023-02-25	2016-03-17	4.2	4.89	—	4.7	0.036	3.53	246.0	0.21	17.03	0.03	1.189	3.05	3.01	5.9	92.3	1.9	-2.39	0.66	0.46	—	4.7	0.004	0.78	0.0	0.04	14.51	0.00	2.057	20.59	0.00	4.9	95.0	0.1	-0.46	1.78	0.88	0.79	—	26794	3420	11	0	0	0	0	logfile
✔	3JCZ	6630	2023-02-24	2016-03-27	3.26	3.11	—	3.3	0.008	0.69	0.0	0.05	7.32	0.01	2.244	8.75	0.00	7.0	93.0	0.0	-4.42	0.77	0.85	4.34	3.3	0.003	0.61	0.0	0.04	13.77	0.00	2.108	9.79	0.28	4.4	95.6	0.0	-0.27	2.05	0.78	0.87	2.10	23286	2976	6	0	0	0	0	logfile
✔	3JD3	6632	2023-02-24	2016-03-28	3.6	3.38	—	3.5	0.011	1.02	0.0	0.06	11.40	0.01	2.125	18.17	0.00	10.7	89.3	0.0	-5.32	0.81	0.80	2.72	3.2	0.003	0.65	0.0	0.04	15.34	0.00	2.140	12.61	0.28	4.0	96.0	0.0	-0.42	1.00	0.81	0.83	2.27	24006	2976	12	0	18	0	0	logfile
✔	3JD4	6633	2023-02-24	2016-03-28	3.4	3.40	—	3.4	0.009	0.96	0.0	0.05	10.21	0.00	2.157	15.60	0.00	6.8	93.0	0.2	-4.82	0.80	0.86	3.90	3.4	0.004	0.63	0.0	0.04	15.60	0.00	2.026	11.75	0.32	3.9	96.1	0.0	0.50	0.72	0.80	0.87	2.40	24054	2982	12	0	18	0	0	logfile
✔	3JD1	6634	2023-02-24	2016-03-28	3.3	2.71	—	3.0	0.015	1.01	0.0	0.06	8.10	0.01	1.935	12.60	0.00	8.2	91.6	0.2	-5.08	0.79	0.80	3.01	2.5	0.004	0.68	0.0	0.04	15.21	0.00	2.159	9.66	0.28	2.8	97.2	0.0	0.47	1.81	0.80	0.85	2.00	23814	2976	12	0	12	0	0	logfile
✔	3JD2	6635	2023-02-24	2016-03-28	3.3	2.95	—	2.9	0.011	1.04	0.0	0.06	8.84	0.01	2.219	10.21	0.72	5.6	93.6	0.8	-5.54	0.80	0.83	3.54	2.8	0.004	0.60	0.0	0.04	14.29	0.00	2.187	9.17	0.44	4.1	95.9	0.0	0.18	1.19	0.81	0.87	2.36	23814	2976	12	0	12	0	0	logfile
✔	3JD0	6631	2023-02-24	2016-03-28	3.47	3.93	—	3.8	0.012	0.82	0.0	0.05	10.31	0.00	1.989	15.40	0.00	13.3	85.9	0.8	-5.89	0.85	0.82	3.48	3.8	0.004	0.70	0.0	0.04	14.28	0.00	2.128	14.60	0.16	4.9	94.9	0.1	0.69	2.53	0.85	0.86	2.35	23478	2976	12	0	6	0	0	logfile

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