Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3JAE	6345	2023-08-12	2015-06-08	3.9	2.88	—	3.5	0.006	1.26	0.0	0.05	9.27	0.01	2.202	13.69	0.00	0.9	99.1	0.0	-1.69	0.70	0.74	1.87	3.2	0.003	0.87	0.0	0.04	13.61	0.00	2.157	15.62	0.16	2.8	97.2	0.0	0.08	1.49	0.72	0.82	1.59	12825	1690	10	0	10	0	0	logfile
✔	3JAD	6344	2023-08-12	2015-06-08	3.9	2.16	—	3.8	0.008	1.33	0.0	0.06	8.45	0.00	2.250	16.87	0.43	2.7	97.3	0.0	-2.13	0.68	0.72	0.33	3.0	0.003	0.76	0.0	0.04	12.95	0.00	2.195	16.00	0.17	4.0	96.0	0.0	0.22	1.23	0.70	0.77	0.37	12705	1685	15	0	15	0	0	logfile
✘	3JAF	6346	2023-08-13	2015-06-08	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13865	1710	15	0	15	0	0	logfile
✔	3JAL	6350	2023-08-25	2015-06-16	3.5	3.70	—	3.6	0.009	1.46	5.0	0.08	15.76	0.01	1.948	1.62	1.21	2.9	97.0	0.1	0.16	0.68	0.86	2.81	3.6	0.004	0.64	0.0	0.04	16.98	0.00	1.891	7.21	0.15	2.4	97.6	0.0	0.73	0.79	0.66	0.87	2.62	43012	5428	26	0	18	0	0	logfile
✔	3JAK	6349	2023-08-25	2015-06-16	3.3	3.49	—	3.6	0.009	1.40	0.0	0.08	15.62	0.01	2.010	2.26	1.12	2.2	97.7	0.1	0.27	0.64	0.85	2.90	3.5	0.003	0.58	0.0	0.04	16.58	0.00	1.953	6.16	0.37	1.9	98.1	0.0	1.18	0.73	0.61	0.87	2.60	43066	5428	26	0	18	0	0	logfile
✔	3JAM	3047	2023-08-19	2015-06-17	3.46	3.54	3.52	3.5	0.007	1.32	63.0	0.10	21.31	0.01	1.398	7.14	13.45	10.2	86.0	3.8	-1.98	0.64	0.83	1.53	3.5	0.003	0.71	0.0	0.04	19.38	0.01	1.893	13.10	0.65	9.1	89.8	1.1	-1.00	0.73	0.67	0.86	1.61	77850	5056	42	1780	83	0	0	logfile
✔	3JAP	3048	2023-08-24	2015-06-18	4.9	5.03	5.08	5.0	0.007	1.39	79.0	0.11	22.42	0.01	1.307	9.48	13.17	10.9	85.8	3.4	-1.68	0.68	0.69	—	4.9	0.004	0.77	0.0	0.04	18.91	0.01	1.237	23.76	0.03	10.5	88.7	0.8	-1.59	2.18	0.71	0.80	—	98333	7272	53	1869	255	0	0	logfile
✔	3JAR	6351	2023-08-25	2015-06-19	3.4	3.64	—	3.6	0.008	1.38	6.0	0.08	16.19	0.01	1.923	1.68	1.82	2.6	97.2	0.2	0.27	0.69	0.87	3.14	3.6	0.003	0.60	0.0	0.04	16.70	0.00	1.918	6.70	0.22	2.2	97.8	0.0	1.17	1.52	0.66	0.87	2.71	43024	5428	26	6	12	0	0	logfile
✔	3JAS	6353	2023-08-25	2015-06-19	3.5	3.68	—	3.7	0.008	1.46	6.0	0.08	16.41	0.01	1.846	3.37	2.07	3.1	96.8	0.1	0.41	0.64	0.85	2.90	3.6	0.003	0.64	0.0	0.04	17.08	0.00	1.917	8.59	0.25	2.6	97.4	0.0	1.53	0.78	0.60	0.84	2.23	40506	5124	24	6	12	0	0	logfile
✔	3JAT	6352	2023-08-25	2015-06-20	3.5	3.68	—	3.7	0.009	1.54	12.0	0.09	16.21	0.01	1.855	1.71	0.55	3.1	96.8	0.1	0.14	0.64	0.82	2.93	3.7	0.003	0.61	0.0	0.04	17.20	0.00	1.911	7.91	0.21	2.2	97.8	0.0	1.05	0.78	0.62	0.84	2.24	40500	5124	24	0	24	0	0	logfile
✔	3JAU	6366	2023-08-12	2015-06-24	4.8	4.76	—	6.0	0.027	2.66	660.0	0.16	14.74	0.02	1.686	10.72	1.90	4.6	94.1	1.3	-2.16	0.21	0.38	—	5.4	0.003	0.70	0.0	0.04	13.62	0.00	2.034	12.63	0.00	4.6	95.0	0.4	-1.07	1.45	0.24	0.57	—	114900	14700	180	0	0	0	0	logfile
✔	5A63	3061	2023-08-11	2015-06-24	3.4	3.50	3.42	3.5	0.010	1.69	8.0	0.11	19.07	0.01	2.079	39.51	13.74	6.4	91.5	2.1	-0.17	0.36	0.40	2.09	3.5	0.003	0.76	0.0	0.04	17.76	0.00	2.217	12.14	1.05	5.5	94.1	0.3	0.06	3.24	0.62	0.82	1.80	10003	1223	13	0	22	0	0	logfile
✔	5A6E	3062	2023-08-12	2015-06-25	4.5	6.76	—	5.1	0.010	3.73	0.0	0.05	15.55	0.01	2.112	8.77	3.19	11.1	88.8	0.2	-5.00	0.36	0.56	—	4.8	0.004	0.60	0.0	0.03	10.41	0.00	2.080	11.78	0.00	5.3	94.7	0.0	-0.72	1.45	0.40	0.73	—	11093	634	4	0	182	0	5102	logfile
✔	5A6F	3063	2023-08-11	2015-06-25	4.2	5.75	—	5.0	0.012	1.50	0.0	0.05	12.32	0.01	2.112	10.08	3.74	12.2	87.6	0.2	-4.94	0.56	0.74	—	4.9	0.002	0.56	0.0	0.04	10.89	0.00	2.048	8.96	0.00	4.7	95.3	0.0	-0.78	0.97	0.57	0.75	—	8881	540	2	0	43	0	4330	logfile
✘	5A7U	3079	2023-08-09	2015-07-10	4.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	455	27	1	0	1	0	231	logfile
✔	5A8L	3099	2023-08-12	2015-07-16	3.8	3.60	—	3.5	0.004	0.67	0.0	0.02	12.36	0.00	1.435	8.96	0.95	10.3	86.8	2.9	-2.06	0.18	0.43	0.47	3.5	0.005	0.82	0.0	0.04	17.26	0.01	2.034	19.30	1.33	10.7	88.1	1.1	-2.35	1.54	0.23	0.63	0.72	12264	624	9	347	0	0	0	logfile
✔	3JB6	6408	2023-08-13	2015-08-02	3.3	3.35	—	3.4	0.010	0.90	4.0	0.06	9.55	0.01	2.123	8.29	0.20	2.4	97.4	0.1	-3.72	0.63	0.90	5.02	3.4	0.002	0.58	0.0	0.04	15.12	0.00	2.150	6.05	0.13	1.9	98.1	0.0	0.06	1.20	0.62	0.88	3.70	13904	1731	6	0	2	0	0	logfile
✔	3JB7	6404	2023-08-13	2015-08-03	4.0	4.13	—	4.1	0.007	0.76	3.0	0.05	10.78	0.00	0.793	10.58	1.13	3.9	95.9	0.2	-2.17	0.76	0.85	—	4.1	0.003	0.69	0.0	0.04	15.29	0.00	2.179	11.30	0.53	2.7	97.2	0.1	0.16	0.89	0.78	0.85	—	14176	1733	8	11	3	0	0	logfile
✘	3JB9	6413	2023-08-21	2015-08-09	3.6	3.70	—	3.6	0.010	1.29	13.0	0.07	16.84	0.01	1.253	18.05	8.06	9.1	87.9	3.0	-3.97	0.52	0.51	1.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	86551	9194	50	328	1328	0	0	logfile
✔	5ADY	3133	2023-08-24	2015-08-25	4.5	4.75	—	4.5	0.011	1.28	0.0	0.06	18.75	0.01	1.391	57.89	0.21	11.7	81.7	6.7	-3.35	0.72	0.63	—	4.5	0.004	0.72	0.0	0.04	17.25	0.01	1.860	27.36	0.00	12.1	86.9	1.0	-2.95	1.11	0.87	0.84	—	97364	4197	35	3020	2	0	0	logfile

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