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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8C03 | 16354 | 2023-11-13 | 2022-12-15 | 3.89 | 4.09 | 3.71 | 4.1 | 0.007 | 0.86 | 0.0 | 0.04 | 12.87 | 0.00 | 1.232 | 8.74 | 3.06 | 2.8 | 97.2 | 0.0 | 2.75 | 0.56 | 0.76 | 1.69 | 4.1 | 0.004 | 0.69 | 0.0 | 0.04 | 16.14 | 0.00 | 2.172 | 14.22 | 0.56 | 2.1 | 97.9 | 0.0 | 2.25 | 1.50 | 0.56 | 0.78 | 1.78 | 3330 | 429 | 1 | 0 | 1 | 0 | 0 | logfile |
✘ | 7P14 | 13155 | 2023-11-13 | 2021-07-01 | 3.66 | 3.82 | 3.50 | 3.8 | 0.004 | 0.64 | 0.0 | 0.04 | 16.56 | 0.00 | 2.295 | 7.45 | 0.00 | 2.7 | 97.3 | 0.0 | 1.11 | 0.60 | 0.78 | 2.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3796 | 454 | 3 | 0 | 3 | 0 | 0 | logfile |
✔ | 7WED | 32447 | 2023-11-13 | 2021-12-23 | 3.5 | 3.62 | — | 3.7 | 0.003 | 0.70 | 0.0 | 0.05 | 13.75 | 0.01 | 2.285 | 7.13 | 0.00 | 8.2 | 91.8 | 0.0 | -1.64 | 0.57 | 0.77 | 2.25 | 3.6 | 0.004 | 0.69 | 0.0 | 0.04 | 16.64 | 0.00 | 2.248 | 7.29 | 0.54 | 9.2 | 90.8 | 0.0 | -1.26 | 1.14 | 0.57 | 0.79 | 1.83 | 3358 | 431 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7DGR | 30674 | 2023-11-13 | 2020-11-12 | 4.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 107305 | 13811 | 102 | 0 | 37 | 0 | 0 | logfile |
✔ | 7WUS | 32840 | 2023-11-13 | 2022-02-09 | 3.4 | 3.78 | — | 3.8 | 0.003 | 0.75 | 0.0 | 0.05 | 17.11 | 0.00 | 2.275 | 11.90 | 1.00 | 8.6 | 91.4 | 0.0 | -2.40 | 0.69 | 0.74 | 1.76 | 3.7 | 0.003 | 0.80 | 0.0 | 0.05 | 17.38 | 0.00 | 2.113 | 12.74 | 0.50 | 8.3 | 91.6 | 0.1 | -1.93 | 1.46 | 0.70 | 0.77 | 1.35 | 5450 | 682 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LY6 | 4118 | 2023-11-13 | 2016-09-24 | 4.5 | 4.72 | — | 4.3 | 0.006 | 1.24 | 0.0 | 0.03 | 24.28 | 0.02 | 1.526 | 94.62 | 36.32 | 20.9 | 74.2 | 4.9 | -5.32 | 0.34 | 0.59 | — | 4.4 | 0.003 | 0.77 | 0.0 | 0.04 | 13.91 | 0.00 | 2.223 | 14.60 | 0.00 | 8.3 | 91.5 | 0.2 | -2.31 | 3.59 | 0.40 | 0.76 | — | 3725 | 471 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PDH | 13338 | 2023-11-13 | 2021-08-05 | 4.0 | 3.51 | — | 3.2 | 0.003 | 0.70 | 0.0 | 0.04 | 14.16 | 0.00 | 2.169 | 14.32 | 0.00 | 5.8 | 94.2 | 0.0 | -1.07 | 0.79 | 0.69 | — | 3.2 | 0.003 | 0.70 | 0.0 | 0.04 | 16.46 | 0.00 | 2.175 | 14.77 | 0.62 | 6.3 | 93.7 | 0.0 | -0.65 | 0.53 | 0.79 | 0.70 | — | 4516 | 577 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7E39 | 30977 | 2023-11-13 | 2021-02-08 | 3.7 | 3.11 | — | 2.9 | 0.005 | 0.77 | 0.0 | 0.05 | 14.37 | 0.01 | 2.130 | 15.98 | 0.00 | 10.1 | 89.9 | 0.0 | -3.52 | 0.50 | 0.74 | 2.30 | 2.9 | 0.003 | 0.63 | 0.0 | 0.05 | 15.71 | 0.00 | 2.190 | 10.48 | 0.00 | 5.2 | 94.8 | 0.0 | -2.15 | 0.43 | 0.49 | 0.73 | 2.16 | 3074 | 414 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7X8Z | 33061 | 2023-11-13 | 2022-03-15 | 4.1 | 4.99 | 4.12 | 4.4 | 0.003 | 0.58 | 0.0 | 0.04 | 13.91 | 0.00 | 2.078 | 11.39 | 0.00 | 12.6 | 87.1 | 0.2 | -2.94 | 0.80 | 0.68 | — | 4.4 | 0.005 | 0.66 | 0.0 | 0.04 | 13.88 | 0.01 | 1.922 | 18.01 | 0.00 | 14.3 | 85.5 | 0.2 | -3.15 | 0.87 | 0.82 | 0.79 | — | 6480 | 426 | 4 | 0 | 1 | 0 | 3147 | logfile |
✔ | 6J5T | 0680 | 2023-11-13 | 2019-01-12 | 3.4 | 3.94 | — | 3.0 | 0.011 | 1.21 | 0.0 | 0.07 | 12.81 | 0.02 | 2.233 | 7.03 | 0.59 | 11.3 | 88.4 | 0.3 | -4.25 | 0.83 | 0.67 | 0.05 | 3.0 | 0.006 | 1.05 | 0.0 | 0.05 | 15.84 | 0.01 | 2.050 | 24.51 | 0.76 | 11.3 | 88.5 | 0.2 | -1.87 | 1.35 | 0.91 | 0.85 | 1.27 | 53488 | 6640 | 25 | 0 | 15 | 0 | 0 | logfile |
✔ | 7YiM | 33861 | 2023-11-13 | 2022-07-17 | 2.6 | 2.93 | 2.77 | 2.9 | 0.013 | 1.14 | 0.0 | 0.07 | 15.89 | 0.01 | 2.272 | 6.72 | 0.78 | 4.9 | 95.1 | 0.0 | -4.17 | 0.67 | 0.68 | 1.25 | 2.9 | 0.003 | 0.64 | 0.0 | 0.04 | 17.74 | 0.00 | 2.221 | 10.52 | 2.52 | 3.4 | 96.6 | 0.0 | 0.68 | 1.25 | 0.64 | 0.66 | 1.25 | 4657 | 592 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6J30 | 9773 | 2023-11-13 | 2019-01-03 | 4.5 | 4.74 | — | 4.6 | 0.002 | 0.44 | 0.0 | 0.04 | 7.35 | 0.00 | 2.093 | 8.60 | 0.07 | 6.4 | 93.4 | 0.3 | -3.38 | 0.86 | 0.72 | — | 4.5 | 0.004 | 0.76 | 0.0 | 0.04 | 12.18 | 0.00 | 1.918 | 21.54 | 0.01 | 5.4 | 94.4 | 0.2 | -0.88 | 1.91 | 0.89 | 0.77 | — | 106227 | 13504 | 47 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QL1 | 14060 | 2023-11-13 | 2021-12-19 | 3.34 | 3.41 | 3.13 | 3.4 | 0.011 | 2.01 | 0.0 | 0.10 | 11.06 | 0.01 | 2.654 | 0.29 | 0.00 | 7.5 | 92.5 | 0.0 | -3.09 | 0.42 | 0.83 | 4.57 | 3.4 | 0.007 | 0.85 | 0.0 | 0.05 | 15.42 | 0.00 | 2.104 | 12.32 | 0.00 | 4.2 | 95.8 | 0.0 | -2.34 | 1.74 | 0.39 | 0.81 | 4.21 | 1671 | 219 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DHA | 27434 | 2023-11-13 | 2022-06-25 | 3.8 | 4.85 | 4.37 | 4.8 | 0.004 | 0.76 | 0.0 | 0.05 | 17.00 | 0.01 | 2.155 | 15.08 | 0.49 | 4.8 | 95.2 | 0.0 | 0.08 | 0.69 | 0.73 | 0.68 | 4.8 | 0.004 | 0.78 | 0.0 | 0.05 | 17.77 | 0.00 | 2.108 | 13.09 | 0.49 | 5.8 | 94.2 | 0.0 | -0.54 | 0.56 | 0.69 | 0.73 | 0.85 | 3510 | 439 | 5 | 0 | 2 | 0 | 0 | logfile |
✔ | 5XY3 | 6784 | 2023-11-13 | 2017-07-06 | 3.2 | 3.24 | — | 3.2 | 0.006 | 1.04 | 7.0 | 0.09 | 17.01 | 0.00 | 1.123 | 6.22 | 3.45 | 6.0 | 92.7 | 1.3 | -3.33 | 0.61 | 0.76 | 2.54 | 3.2 | 0.005 | 0.69 | 0.0 | 0.04 | 16.58 | 0.01 | 1.986 | 8.13 | 0.55 | 5.8 | 93.8 | 0.4 | -1.20 | 0.61 | 0.78 | 0.85 | 2.28 | 107145 | 5917 | 43 | 2815 | 0 | 0 | 0 | logfile |
✔ | 7WoC | 32648 | 2023-11-13 | 2022-01-21 | 3.35 | 3.49 | — | 3.4 | 0.002 | 0.48 | 0.0 | 0.04 | 9.56 | 0.00 | 2.288 | 6.75 | 4.60 | 6.3 | 93.7 | 0.0 | -4.80 | 0.72 | 0.76 | 2.37 | 3.4 | 0.005 | 0.75 | 0.0 | 0.05 | 15.06 | 0.00 | 2.179 | 11.78 | 0.38 | 11.8 | 88.2 | 0.0 | -3.10 | 1.28 | 0.75 | 0.84 | 2.64 | 4746 | 610 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7M18 | 23615 | 2023-11-13 | 2021-03-12 | 3.38 | 4.09 | — | 4.1 | 0.007 | 1.33 | 0.0 | 0.05 | 19.80 | 0.01 | 1.728 | 23.77 | 0.28 | 10.4 | 89.3 | 0.3 | -2.48 | 0.74 | 0.73 | 0.41 | 4.1 | 0.003 | 0.79 | 0.0 | 0.04 | 19.96 | 0.01 | 2.078 | 17.84 | 0.33 | 8.5 | 91.3 | 0.1 | -1.88 | 0.55 | 0.75 | 0.74 | 0.41 | 54064 | 6904 | 32 | 8 | 16 | 0 | 0 | logfile |
✔ | 7RTV | 24690 | 2023-11-13 | 2021-08-15 | 3.96 | 4.06 | — | 4.1 | 0.004 | 0.76 | 0.0 | 0.05 | 14.21 | 0.00 | 2.207 | 14.04 | 0.32 | 2.8 | 97.2 | 0.0 | 3.61 | 0.41 | 0.63 | 0.10 | 4.1 | 0.004 | 0.91 | 0.0 | 0.04 | 16.58 | 0.00 | 2.168 | 18.02 | 0.32 | 3.3 | 96.7 | 0.0 | 2.73 | 1.76 | 0.41 | 0.64 | 0.28 | 2881 | 366 | 3 | 0 | 6 | 0 | 0 | logfile |
✔ | 8Q9i | 18282 | 2023-11-13 | 2023-08-20 | 2.56 | 2.01 | 2.38 | 2.2 | 0.011 | 1.80 | 0.0 | 0.08 | 11.44 | 0.01 | 2.520 | 0.00 | 0.00 | 3.8 | 96.2 | 0.0 | -1.34 | 0.29 | 0.75 | 7.51 | 2.3 | 0.003 | 0.57 | 0.0 | 0.05 | 17.83 | 0.00 | 2.169 | 1.76 | 0.00 | 0.5 | 99.5 | 0.0 | -1.49 | 4.60 | 0.38 | 0.87 | 7.68 | 3411 | 219 | 3 | 0 | 0 | 0 | 1740 | logfile |
✔ | 7SL9 | 25195 | 2023-11-13 | 2021-10-23 | 3.5 | 3.79 | — | 3.7 | 0.005 | 0.95 | 0.0 | 0.06 | 13.95 | 0.01 | 2.259 | 4.68 | 0.40 | 5.9 | 94.1 | 0.0 | -6.01 | 0.64 | 0.82 | 2.99 | 3.7 | 0.004 | 0.80 | 0.0 | 0.04 | 15.68 | 0.00 | 2.101 | 14.88 | 1.01 | 6.1 | 93.9 | 0.0 | -1.25 | 1.23 | 0.64 | 0.82 | 1.41 | 4712 | 619 | 3 | 0 | 1 | 0 | 0 | logfile |