Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7V47	31702	2023-02-16	2021-08-12	2.8	2.80	—	3.0	0.007	0.78	0.0	0.06	12.91	0.00	2.567	6.32	0.00	18.6	81.4	0.0	-5.86	0.44	0.80	6.31	2.9	0.005	0.72	0.0	0.06	17.25	0.00	2.432	8.29	3.25	20.3	79.7	0.0	-4.30	0.33	0.44	0.80	6.27	2484	366	6	0	0	0	0	logfile
✔	7V4A	31705	2023-02-16	2021-08-12	3.2	3.19	—	3.3	0.002	0.52	0.0	0.05	14.28	0.00	2.423	8.54	0.00	7.9	92.1	0.0	-5.80	0.42	0.82	3.23	3.2	0.003	0.60	0.0	0.05	16.38	0.00	2.347	6.77	0.61	11.8	88.2	0.0	-3.97	1.70	0.42	0.81	3.13	1653	240	3	0	0	0	0	logfile
✔	6VHL	21207	2023-02-16	2020-01-10	3.3	3.60	—	3.5	0.007	1.03	0.0	0.07	15.85	0.01	1.791	14.51	4.48	14.7	85.3	0.0	-6.30	0.26	0.70	3.54	3.8	0.003	0.76	0.0	0.04	16.24	0.00	2.321	8.71	0.00	8.7	91.3	0.0	-3.58	2.81	0.26	0.69	3.41	1190	158	4	0	0	0	0	logfile
✔	5M6S	3451	2023-02-16	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.6	0.003	0.63	0.0	0.03	18.81	0.00	1.995	10.68	0.00	6.2	93.8	0.0	2.64	2.46	0.03	0.08	—	1593	98	1	0	0	0	793	logfile
✔	6X0V	21985	2023-02-16	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.49	0.0	0.04	12.98	0.00	2.224	17.83	0.00	5.0	95.0	0.0	2.29	1.20	0.40	0.76	—	1384	211	4	0	0	0	62	logfile
✔	7URM	26714	2023-02-16	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	23.67	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.16	0.0	0.05	22.87	0.01	1.983	29.94	0.00	0.0	0.0	0.0	—	1.70	0.15	0.54	—	1905	0	1	90	0	0	0	logfile
✔	7UHB	26511	2023-02-16	2022-03-26	3.0	3.17	2.97	3.2	0.011	1.35	3.0	0.12	9.86	0.00	2.562	5.08	1.42	3.0	96.6	0.4	-0.52	0.52	0.54	-0.09	3.1	0.003	0.62	0.0	0.04	16.29	0.00	2.196	8.70	1.42	3.8	96.2	0.0	0.66	2.42	0.69	0.83	3.49	2141	270	3	0	3	0	0	logfile
✔	6RJU	4906	2023-02-16	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	9.8	0.003	0.63	0.0	0.03	15.97	0.00	2.424	6.03	0.00	6.2	93.8	0.0	-0.13	1.31	0.27	0.05	0.48	1992	131	1	0	0	0	997	logfile
✔	7UiU	26553	2023-02-16	2022-03-29	2.8	3.11	2.72	3.1	0.004	0.62	0.0	0.04	13.60	0.00	2.356	3.35	0.00	4.8	95.2	0.0	-2.09	0.28	0.82	1.99	3.1	0.004	0.96	0.0	0.04	17.04	0.00	2.228	11.74	1.67	4.8	95.2	0.0	-2.17	1.37	0.28	0.89	2.33	607	85	1	0	0	0	0	logfile
✔	6YJ5	10816	2023-02-16	2020-04-02	3.5	2.92	3.56	3.3	0.007	0.87	0.0	0.05	13.19	0.01	2.183	4.22	0.00	12.5	87.5	0.0	-5.13	0.42	0.62	3.01	3.3	0.007	0.81	0.0	0.05	15.31	0.01	2.257	11.88	0.61	12.2	87.8	0.0	-2.14	0.81	0.52	0.74	3.59	2061	306	1	0	0	0	0	logfile
✔	6VHA	21201	2023-02-16	2020-01-09	4.3	4.35	—	7.8	0.007	1.02	0.0	0.05	15.14	0.01	2.319	26.84	2.13	12.4	87.6	0.0	-4.78	0.55	0.54	—	4.1	0.003	0.74	0.0	0.05	13.40	0.00	2.336	12.82	0.00	9.8	90.2	0.0	-4.37	3.38	0.57	0.60	—	2439	321	3	0	0	0	0	logfile
✔	7RZU	24778	2023-02-16	2021-08-27	2.3	2.32	—	2.0	0.006	0.50	0.0	0.04	13.61	0.01	2.212	7.50	0.00	2.9	97.1	0.0	1.69	0.77	0.78	1.84	2.0	0.002	0.48	0.0	0.03	15.88	0.00	2.308	6.69	1.40	0.0	100.0	0.0	5.49	0.47	0.80	0.81	1.54	2439	324	6	0	0	0	0	logfile
✔	6GX5	0077	2023-02-16	2018-06-26	3.2	2.51	2.94	3.2	0.017	1.20	0.0	0.11	16.09	0.01	2.596	5.96	4.94	4.3	95.7	0.0	-3.50	0.85	0.88	5.60	3.2	0.004	0.76	0.0	0.05	17.31	0.00	2.207	9.16	1.65	5.8	94.2	0.0	-2.81	0.66	0.82	0.85	4.84	2133	282	3	0	0	0	0	logfile
✔	7JZU	22574	2023-02-16	2020-09-02	3.1	3.26	3.10	3.3	0.015	1.33	0.0	0.08	9.63	0.01	2.509	0.78	0.00	3.3	96.7	0.0	0.23	0.69	0.76	4.15	3.3	0.002	0.55	0.0	0.04	14.20	0.00	2.251	5.70	0.00	1.6	98.4	0.0	0.79	1.62	0.71	0.79	3.98	1987	248	3	0	3	0	0	logfile
✘	7UL4	26591	2023-02-16	2022-04-03	2.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2524	351	3	0	1	4	0	logfile
✔	7US9	26729	2023-02-16	2022-04-23	3.8	3.84	3.64	3.9	0.014	1.55	0.0	0.11	7.45	0.01	2.489	3.45	0.00	2.3	97.7	0.0	1.07	0.59	0.74	4.43	3.8	0.003	0.64	0.0	0.07	11.91	0.01	2.310	6.41	0.00	3.1	96.9	0.0	0.49	1.44	0.60	0.77	2.98	1127	145	3	0	4	0	0	logfile
✔	7USB	26731	2023-02-16	2022-04-23	3.1	3.28	3.18	3.3	0.012	1.70	0.0	0.11	10.61	0.01	2.590	1.61	1.39	5.5	94.5	0.0	-0.28	0.59	0.76	5.40	3.3	0.007	0.80	0.0	0.05	13.30	0.00	2.421	5.78	0.00	6.5	93.5	0.0	-1.76	1.34	0.61	0.84	5.47	1661	213	3	0	5	0	0	logfile
✔	7L7H	23212	2023-02-16	2020-12-28	4.0	2.39	—	4.0	0.008	1.47	0.0	0.08	15.10	0.01	2.199	13.87	3.53	36.3	63.7	0.0	-6.00	0.47	0.60	—	4.0	0.004	0.94	0.0	0.06	16.29	0.00	2.073	19.50	1.96	27.7	72.3	0.0	-4.33	0.93	0.51	0.65	—	2430	352	8	0	0	0	0	logfile
✔	7DWV	30887	2023-02-16	2021-01-18	3.07	2.95	—	3.6	0.007	0.80	0.0	0.06	14.69	0.00	2.258	16.67	0.00	26.8	73.2	0.0	-7.45	0.41	0.75	4.09	4.1	0.004	0.72	0.0	0.05	17.18	0.00	2.182	17.15	1.19	22.4	77.6	0.0	-6.08	1.50	0.41	0.75	2.54	2064	258	6	0	0	0	0	logfile
✔	7U0Z	26268	2023-02-16	2022-02-19	4.2	3.55	—	4.3	0.004	0.75	0.0	0.05	11.44	0.00	2.146	12.81	0.00	1.9	98.1	0.0	-2.57	0.41	0.71	—	4.3	0.003	0.68	0.0	0.05	12.66	0.00	2.230	10.24	0.00	4.6	95.4	0.0	-3.26	0.68	0.37	0.71	—	2487	330	3	0	0	0	0	logfile

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