Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8C03	16354	2023-11-13	2022-12-15	3.89	4.09	3.71	4.1	0.007	0.86	0.0	0.04	12.87	0.00	1.232	8.74	3.06	2.8	97.2	0.0	2.75	0.56	0.76	1.69	4.1	0.004	0.69	0.0	0.04	16.14	0.00	2.172	14.22	0.56	2.1	97.9	0.0	2.25	1.50	0.56	0.78	1.78	3330	429	1	0	1	0	0	logfile
✘	7P14	13155	2023-11-13	2021-07-01	3.66	3.82	3.50	3.8	0.004	0.64	0.0	0.04	16.56	0.00	2.295	7.45	0.00	2.7	97.3	0.0	1.11	0.60	0.78	2.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3796	454	3	0	3	0	0	logfile
✔	7WED	32447	2023-11-13	2021-12-23	3.5	3.62	—	3.7	0.003	0.70	0.0	0.05	13.75	0.01	2.285	7.13	0.00	8.2	91.8	0.0	-1.64	0.57	0.77	2.25	3.6	0.004	0.69	0.0	0.04	16.64	0.00	2.248	7.29	0.54	9.2	90.8	0.0	-1.26	1.14	0.57	0.79	1.83	3358	431	3	0	0	0	0	logfile
✘	7DGR	30674	2023-11-13	2020-11-12	4.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	107305	13811	102	0	37	0	0	logfile
✔	7WUS	32840	2023-11-13	2022-02-09	3.4	3.78	—	3.8	0.003	0.75	0.0	0.05	17.11	0.00	2.275	11.90	1.00	8.6	91.4	0.0	-2.40	0.69	0.74	1.76	3.7	0.003	0.80	0.0	0.05	17.38	0.00	2.113	12.74	0.50	8.3	91.6	0.1	-1.93	1.46	0.70	0.77	1.35	5450	682	2	0	0	0	0	logfile
✔	5LY6	4118	2023-11-13	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.62	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.003	0.77	0.0	0.04	13.91	0.00	2.223	14.60	0.00	8.3	91.5	0.2	-2.31	3.59	0.40	0.76	—	3725	471	1	0	0	0	0	logfile
✔	7PDH	13338	2023-11-13	2021-08-05	4.0	3.51	—	3.2	0.003	0.70	0.0	0.04	14.16	0.00	2.169	14.32	0.00	5.8	94.2	0.0	-1.07	0.79	0.69	—	3.2	0.003	0.70	0.0	0.04	16.46	0.00	2.175	14.77	0.62	6.3	93.7	0.0	-0.65	0.53	0.79	0.70	—	4516	577	2	0	0	0	0	logfile
✔	7E39	30977	2023-11-13	2021-02-08	3.7	3.11	—	2.9	0.005	0.77	0.0	0.05	14.37	0.01	2.130	15.98	0.00	10.1	89.9	0.0	-3.52	0.50	0.74	2.30	2.9	0.003	0.63	0.0	0.05	15.71	0.00	2.190	10.48	0.00	5.2	94.8	0.0	-2.15	0.43	0.49	0.73	2.16	3074	414	4	0	1	0	0	logfile
✔	7X8Z	33061	2023-11-13	2022-03-15	4.1	4.99	4.12	4.4	0.003	0.58	0.0	0.04	13.91	0.00	2.078	11.39	0.00	12.6	87.1	0.2	-2.94	0.80	0.68	—	4.4	0.005	0.66	0.0	0.04	13.88	0.01	1.922	18.01	0.00	14.3	85.5	0.2	-3.15	0.87	0.82	0.79	—	6480	426	4	0	1	0	3147	logfile
✔	6J5T	0680	2023-11-13	2019-01-12	3.4	3.94	—	3.0	0.011	1.21	0.0	0.07	12.81	0.02	2.233	7.03	0.59	11.3	88.4	0.3	-4.25	0.83	0.67	0.05	3.0	0.006	1.05	0.0	0.05	15.84	0.01	2.050	24.51	0.76	11.3	88.5	0.2	-1.87	1.35	0.91	0.85	1.27	53488	6640	25	0	15	0	0	logfile
✔	7YiM	33861	2023-11-13	2022-07-17	2.6	2.93	2.77	2.9	0.013	1.14	0.0	0.07	15.89	0.01	2.272	6.72	0.78	4.9	95.1	0.0	-4.17	0.67	0.68	1.25	2.9	0.003	0.64	0.0	0.04	17.74	0.00	2.221	10.52	2.52	3.4	96.6	0.0	0.68	1.25	0.64	0.66	1.25	4657	592	1	0	0	0	0	logfile
✔	6J30	9773	2023-11-13	2019-01-03	4.5	4.74	—	4.6	0.002	0.44	0.0	0.04	7.35	0.00	2.093	8.60	0.07	6.4	93.4	0.3	-3.38	0.86	0.72	—	4.5	0.004	0.76	0.0	0.04	12.18	0.00	1.918	21.54	0.01	5.4	94.4	0.2	-0.88	1.91	0.89	0.77	—	106227	13504	47	0	0	0	0	logfile
✔	7QL1	14060	2023-11-13	2021-12-19	3.34	3.41	3.13	3.4	0.011	2.01	0.0	0.10	11.06	0.01	2.654	0.29	0.00	7.5	92.5	0.0	-3.09	0.42	0.83	4.57	3.4	0.007	0.85	0.0	0.05	15.42	0.00	2.104	12.32	0.00	4.2	95.8	0.0	-2.34	1.74	0.39	0.81	4.21	1671	219	3	0	0	0	0	logfile
✔	8DHA	27434	2023-11-13	2022-06-25	3.8	4.85	4.37	4.8	0.004	0.76	0.0	0.05	17.00	0.01	2.155	15.08	0.49	4.8	95.2	0.0	0.08	0.69	0.73	0.68	4.8	0.004	0.78	0.0	0.05	17.77	0.00	2.108	13.09	0.49	5.8	94.2	0.0	-0.54	0.56	0.69	0.73	0.85	3510	439	5	0	2	0	0	logfile
✔	5XY3	6784	2023-11-13	2017-07-06	3.2	3.24	—	3.2	0.006	1.04	7.0	0.09	17.01	0.00	1.123	6.22	3.45	6.0	92.7	1.3	-3.33	0.61	0.76	2.54	3.2	0.005	0.69	0.0	0.04	16.58	0.01	1.986	8.13	0.55	5.8	93.8	0.4	-1.20	0.61	0.78	0.85	2.28	107145	5917	43	2815	0	0	0	logfile
✔	7WoC	32648	2023-11-13	2022-01-21	3.35	3.49	—	3.4	0.002	0.48	0.0	0.04	9.56	0.00	2.288	6.75	4.60	6.3	93.7	0.0	-4.80	0.72	0.76	2.37	3.4	0.005	0.75	0.0	0.05	15.06	0.00	2.179	11.78	0.38	11.8	88.2	0.0	-3.10	1.28	0.75	0.84	2.64	4746	610	4	0	1	0	0	logfile
✔	7M18	23615	2023-11-13	2021-03-12	3.38	4.09	—	4.1	0.007	1.33	0.0	0.05	19.80	0.01	1.728	23.77	0.28	10.4	89.3	0.3	-2.48	0.74	0.73	0.41	4.1	0.003	0.79	0.0	0.04	19.96	0.01	2.078	17.84	0.33	8.5	91.3	0.1	-1.88	0.55	0.75	0.74	0.41	54064	6904	32	8	16	0	0	logfile
✔	7RTV	24690	2023-11-13	2021-08-15	3.96	4.06	—	4.1	0.004	0.76	0.0	0.05	14.21	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.004	0.91	0.0	0.04	16.58	0.00	2.168	18.02	0.32	3.3	96.7	0.0	2.73	1.76	0.41	0.64	0.28	2881	366	3	0	6	0	0	logfile
✔	8Q9i	18282	2023-11-13	2023-08-20	2.56	2.01	2.38	2.2	0.011	1.80	0.0	0.08	11.44	0.01	2.520	0.00	0.00	3.8	96.2	0.0	-1.34	0.29	0.75	7.51	2.3	0.003	0.57	0.0	0.05	17.83	0.00	2.169	1.76	0.00	0.5	99.5	0.0	-1.49	4.60	0.38	0.87	7.68	3411	219	3	0	0	0	1740	logfile
✔	7SL9	25195	2023-11-13	2021-10-23	3.5	3.79	—	3.7	0.005	0.95	0.0	0.06	13.95	0.01	2.259	4.68	0.40	5.9	94.1	0.0	-6.01	0.64	0.82	2.99	3.7	0.004	0.80	0.0	0.04	15.68	0.00	2.101	14.88	1.01	6.1	93.9	0.0	-1.25	1.23	0.64	0.82	1.41	4712	619	3	0	1	0	0	logfile

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