Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RFP	24444	2022-04-04	2021-07-14	4.4	4.57	—	4.3	0.014	2.06	8.0	0.12	7.12	0.01	1.581	3.60	8.00	9.5	87.5	3.0	-1.46	0.68	0.61	—	4.3	0.004	0.91	0.0	0.04	6.89	0.00	2.185	8.70	0.00	15.2	84.3	0.5	-4.03	1.49	0.80	0.75	—	5532	1114	6	0	0	0	0	logfile
✔	6KS8	0760	2022-04-05	2019-08-23	4.69	4.76	—	4.6	0.001	0.39	0.0	0.04	7.12	0.00	2.228	5.85	0.01	4.4	95.5	0.0	-3.61	0.77	0.67	—	4.6	0.003	0.69	0.0	0.04	11.61	0.00	2.100	15.56	0.01	3.0	97.0	0.0	-0.13	1.85	0.80	0.71	—	61943	8120	16	0	0	0	0	logfile
✔	6J2X	9772	2022-04-04	2019-01-03	3.8	3.99	—	3.9	0.002	0.40	0.0	0.04	7.12	0.00	2.220	6.62	0.00	5.8	94.1	0.1	-3.52	0.80	0.70	0.49	3.9	0.005	0.82	1.0	0.05	15.39	0.01	2.081	20.71	0.70	5.3	94.6	0.1	-0.82	1.89	0.84	0.78	0.91	106176	13501	47	0	0	0	0	logfile
✔	6KRD	0756	2022-04-05	2019-08-21	4.38	4.25	—	4.4	0.001	0.39	0.0	0.04	7.15	0.00	2.226	5.80	0.00	4.5	95.5	0.1	-3.58	0.57	0.52	—	4.3	0.008	0.86	1.0	0.05	11.99	0.00	1.822	15.45	0.01	3.3	96.6	0.1	-0.02	1.78	0.63	0.59	—	61005	8006	16	0	0	0	0	logfile
✔	7VXA	32173	2022-04-09	2021-11-12	3.9	4.16	—	4.1	0.002	0.41	0.0	0.04	7.17	0.00	2.017	12.91	0.00	4.3	95.7	0.0	-1.90	0.60	0.60	0.95	4.0	0.005	0.74	0.0	0.04	13.79	0.00	1.906	33.99	0.15	4.8	95.2	0.1	-0.61	1.69	0.65	0.72	1.08	46176	3795	4	0	0	0	16288	logfile
✔	6J2Q	9771	2022-04-04	2019-01-02	3.8	3.95	—	3.9	0.002	0.40	0.0	0.04	7.17	0.00	2.202	6.56	0.00	5.5	94.4	0.1	-3.50	0.77	0.68	0.88	3.9	0.004	0.80	0.0	0.04	15.39	0.00	2.012	16.20	0.52	3.9	95.9	0.1	-0.67	2.27	0.82	0.76	1.04	106311	13518	47	0	0	0	0	logfile
✔	7WK3	32557	2022-04-07	2022-01-08	3.4	2.86	—	3.4	0.004	0.56	0.0	0.04	7.18	0.00	1.998	3.79	0.00	3.6	96.3	0.0	-2.17	0.65	0.57	1.77	3.3	0.004	0.71	0.0	0.04	14.43	0.00	2.154	10.51	0.36	2.9	97.1	0.0	-0.15	1.12	0.79	0.79	1.85	24805	3162	3	0	0	0	0	logfile
✔	7JG8	22314	2022-04-06	2020-07-18	3.3	2.35	3.38	3.3	0.009	1.50	0.0	0.20	7.20	0.01	2.424	0.51	0.00	3.2	96.6	0.2	-1.30	0.62	0.55	—	3.4	0.002	0.82	0.0	0.08	5.33	0.00	2.297	1.62	0.00	7.7	92.2	0.1	-1.26	1.28	0.72	0.70	—	19573	4827	26	0	7	0	0	logfile
✔	7VX9	32172	2022-04-09	2021-11-12	4.0	4.30	—	4.2	0.002	0.37	0.0	0.04	7.20	0.00	2.022	12.45	0.00	4.1	95.8	0.1	-2.09	0.63	0.59	—	4.1	0.003	0.64	0.0	0.04	14.40	0.00	1.913	37.84	0.48	3.9	96.0	0.2	-0.67	1.39	0.67	0.72	—	46098	3789	4	0	0	0	16250	logfile
✔	7WKA	32564	2022-04-08	2022-01-08	3.64	3.27	—	3.6	0.002	0.47	0.0	0.04	7.20	0.00	2.171	7.35	0.11	4.0	95.9	0.1	-1.95	0.59	0.46	0.82	3.8	0.004	0.79	0.0	0.05	13.97	0.01	2.068	15.37	0.68	3.4	96.5	0.1	-0.45	1.57	0.76	0.72	1.23	31575	4041	7	0	0	0	0	logfile
✔	7VXB	32174	2022-04-07	2021-11-12	3.9	4.21	—	4.1	0.002	0.41	0.0	0.04	7.20	0.00	2.045	12.24	0.00	4.1	95.8	0.0	-1.93	0.60	0.62	0.94	4.1	0.009	0.97	1.0	0.04	14.21	0.01	2.006	15.01	0.18	3.7	96.2	0.1	-0.16	1.15	0.66	0.75	1.06	29888	3795	4	0	0	0	0	logfile
✔	6DWB	8924	2022-04-06	2018-06-26	3.3	3.43	—	3.4	0.007	0.66	0.0	0.04	7.21	0.01	2.161	2.34	0.00	5.1	94.9	0.0	-6.22	0.61	0.75	2.51	3.4	0.004	0.53	0.0	0.04	13.66	0.00	2.134	4.08	0.05	3.8	96.2	0.0	4.41	1.14	0.76	0.91	3.08	18360	2340	30	0	0	0	0	logfile
✘	5GW4	9540	2022-04-05	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.49	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✔	7VXi	32180	2022-04-07	2021-11-12	3.4	2.35	—	2.0	0.002	0.49	0.0	0.04	7.29	0.00	2.125	3.01	0.00	4.3	95.5	0.1	-1.83	0.65	0.60	1.83	2.1	0.004	0.70	0.0	0.05	13.63	0.01	2.105	10.97	0.29	4.0	95.8	0.2	-0.16	1.43	0.72	0.70	2.44	24570	3144	3	0	0	0	0	logfile
✔	7WK2	32556	2022-04-07	2022-01-08	3.1	2.75	—	3.3	0.004	0.57	0.0	0.04	7.30	0.00	1.974	3.94	0.00	3.8	96.2	0.0	-2.33	0.66	0.57	1.89	3.3	0.003	0.71	0.0	0.05	14.60	0.00	1.947	10.19	0.32	2.7	97.3	0.0	-0.05	1.16	0.80	0.79	2.05	24879	3171	3	0	0	0	0	logfile
✔	3JCZ	6630	2022-04-06	2016-03-27	3.26	3.11	—	3.3	0.008	0.69	0.0	0.05	7.32	0.01	2.244	8.63	0.00	7.0	93.0	0.0	-4.42	0.77	0.85	4.34	3.3	0.004	0.66	0.0	0.04	13.91	0.00	2.084	10.87	0.28	5.3	94.7	0.0	-0.61	2.04	0.78	0.87	2.39	23286	2976	6	0	0	0	0	logfile
✔	6J30	9773	2022-04-04	2019-01-03	4.5	4.74	—	4.6	0.002	0.44	0.0	0.04	7.35	0.00	2.093	8.56	0.07	6.4	93.4	0.3	-3.38	0.86	0.72	—	4.5	0.003	0.73	0.0	0.04	12.16	0.00	2.060	19.34	0.00	5.3	94.5	0.2	-0.65	1.90	0.89	0.77	—	106227	13504	47	0	0	0	0	logfile
✔	7WD9	32435	2022-04-06	2021-12-21	3.7	4.02	—	3.8	0.003	0.45	0.0	0.04	7.35	0.00	1.967	2.73	0.00	4.2	95.6	0.1	-1.79	0.57	0.42	0.74	3.8	0.005	0.80	1.0	0.04	13.65	0.00	1.834	13.06	0.15	6.0	93.9	0.1	-1.01	1.31	0.75	0.69	1.08	69720	4533	9	0	0	0	34404	logfile
✔	6DSo	8910	2022-04-04	2018-06-14	3.0	3.30	2.98	3.4	0.009	0.94	0.0	0.06	7.35	0.00	2.431	1.53	0.00	3.2	96.8	0.0	-4.46	0.49	0.81	6.10	3.3	0.006	0.73	0.0	0.05	15.53	0.00	2.156	11.82	0.69	9.5	90.5	0.0	-4.38	1.55	0.50	0.83	5.18	6588	828	12	0	0	0	0	logfile
✔	7VXE	32177	2022-04-09	2021-11-12	3.2	2.31	—	2.0	0.003	0.45	0.0	0.04	7.36	0.00	2.082	1.83	0.00	4.4	95.5	0.1	-1.79	0.61	0.54	2.41	2.1	0.003	0.58	0.0	0.04	12.72	0.00	1.935	4.93	0.22	3.3	96.6	0.2	-0.03	1.46	0.70	0.72	2.67	49296	3186	3	0	0	0	24366	logfile

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