Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6oLL	20116	2023-02-23	2019-04-16	4.1	4.59	—	4.4	0.004	1.05	0.0	0.06	6.94	0.01	2.400	0.40	0.00	2.0	97.8	0.2	-0.51	0.67	0.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10426	2114	6	0	0	0	0	logfile
✔	7TKG	25968	2023-02-23	2022-01-17	4.5	7.60	4.79	4.2	0.019	2.20	0.0	0.00	6.95	0.01	2.361	0.08	0.00	4.3	94.2	1.5	-0.60	0.58	0.61	—	4.2	0.005	0.94	0.0	0.00	6.32	0.00	2.099	17.76	0.00	13.6	86.2	0.3	-1.81	1.60	0.80	0.81	—	20228	5056	27	0	0	0	0	logfile
✔	7MJP	23881	2023-02-21	2021-04-20	4.2	4.40	—	4.3	0.007	1.11	0.0	0.07	7.09	0.01	1.477	2.76	0.00	9.1	90.9	0.0	-1.16	0.51	0.65	—	4.4	0.002	0.59	0.0	0.04	5.47	0.00	2.285	0.87	0.00	6.8	93.2	0.0	-0.36	0.44	0.56	0.69	—	14163	2818	10	0	8	0	0	logfile
✔	6PLQ	20372	2023-02-21	2019-07-01	3.4	4.30	—	4.3	0.001	0.46	0.0	0.04	7.10	0.00	2.285	5.97	0.00	2.0	98.0	0.0	-4.40	0.57	0.36	0.62	3.9	0.004	1.00	0.0	0.05	14.57	0.00	2.135	15.79	0.58	4.9	95.1	0.0	-1.08	1.74	0.72	0.74	0.99	14240	1730	15	0	20	0	0	logfile
✔	6PLP	20371	2023-02-21	2019-07-01	3.3	3.51	—	3.8	0.001	0.46	0.0	0.04	7.10	0.00	2.285	5.97	0.00	2.0	98.0	0.0	-4.40	0.44	0.72	3.32	3.6	0.003	0.64	0.0	0.04	13.63	0.00	2.098	10.70	0.19	3.6	96.4	0.0	-0.94	1.22	0.44	0.75	2.95	14240	1730	15	0	20	0	0	logfile
✔	6KS7	0759	2023-02-23	2019-08-23	4.62	4.57	—	4.5	0.001	0.39	0.0	0.04	7.11	0.00	2.241	5.72	0.00	4.3	95.7	0.0	-3.50	0.70	0.62	—	4.5	0.003	0.70	0.0	0.04	12.04	0.00	2.131	14.80	0.03	3.3	96.6	0.1	-0.06	1.85	0.74	0.67	—	62022	8131	16	0	0	0	0	logfile
✔	6KRE	0757	2023-02-23	2019-08-21	4.45	4.34	—	4.4	0.001	0.39	0.0	0.04	7.11	0.00	2.244	6.04	0.03	4.1	95.8	0.1	-3.50	0.61	0.56	—	4.4	0.003	0.68	0.0	0.04	11.97	0.00	2.090	13.70	0.03	3.5	96.4	0.1	0.20	1.80	0.67	0.64	—	60321	7922	16	0	0	0	0	logfile
✔	7RFP	24444	2023-02-17	2021-07-14	4.4	4.57	—	4.3	0.014	2.06	8.0	0.12	7.12	0.01	1.581	3.60	8.00	9.5	87.5	3.0	-1.46	0.68	0.61	—	4.3	0.004	0.92	0.0	0.04	7.02	0.00	2.177	9.44	0.00	14.9	84.6	0.5	-3.98	1.49	0.80	0.75	—	5532	1114	6	0	0	0	0	logfile
✔	6KS8	0760	2023-02-23	2019-08-23	4.69	4.76	—	4.6	0.001	0.39	0.0	0.04	7.12	0.00	2.228	5.86	0.01	4.4	95.5	0.0	-3.61	0.77	0.67	—	4.6	0.003	0.73	0.0	0.05	11.70	0.00	2.011	17.70	0.01	3.4	96.6	0.0	-0.29	1.89	0.81	0.73	—	61943	8120	16	0	0	0	0	logfile
✔	6KRD	0756	2023-02-23	2019-08-21	4.38	4.25	—	4.4	0.001	0.39	0.0	0.04	7.15	0.00	2.226	5.80	0.00	4.5	95.5	0.1	-3.58	0.57	0.52	—	4.3	0.003	0.67	0.0	0.04	11.93	0.00	2.014	12.31	0.01	3.2	96.7	0.1	0.08	1.78	0.62	0.58	—	61005	8006	16	0	0	0	0	logfile
✔	7WK3	32557	2023-02-25	2022-01-08	3.4	2.86	—	3.4	0.004	0.56	0.0	0.04	7.18	0.00	1.998	3.79	0.00	3.6	96.3	0.0	-2.17	0.65	0.57	1.77	3.3	0.006	0.78	0.0	0.05	14.33	0.00	2.032	12.14	0.87	3.9	96.1	0.0	-0.34	1.12	0.79	0.79	2.02	24805	3162	3	0	0	0	0	logfile
✔	7VXB	32174	2023-02-27	2021-11-12	3.9	4.21	—	4.1	0.002	0.41	0.0	0.04	7.20	0.00	2.045	12.30	0.00	4.1	95.8	0.0	-1.93	0.60	0.62	0.94	4.1	0.007	0.88	0.0	0.05	14.42	0.01	1.887	22.10	0.75	4.9	95.0	0.1	-0.50	1.20	0.67	0.76	0.98	29888	3795	4	0	0	0	0	logfile
✔	7JG8	22314	2023-02-23	2020-07-18	3.3	2.35	3.37	3.3	0.009	1.50	0.0	0.20	7.20	0.01	2.424	0.51	0.00	3.2	96.6	0.2	-1.30	0.62	0.55	—	3.4	0.003	0.87	0.0	0.08	5.72	0.00	2.277	0.43	0.00	9.5	90.4	0.1	-0.84	1.26	0.72	0.70	—	19573	4827	26	0	7	0	0	logfile
✔	6DWB	8924	2023-02-22	2018-06-26	3.3	3.43	—	3.4	0.007	0.66	0.0	0.04	7.21	0.01	2.161	2.34	0.00	5.1	94.9	0.0	-6.22	0.61	0.75	2.51	3.4	0.003	0.49	0.0	0.03	13.59	0.00	2.142	4.35	0.10	3.6	96.4	0.0	4.58	1.15	0.75	0.90	2.83	18360	2340	30	0	0	0	0	logfile
✘	5GW4	9540	2023-02-24	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.49	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✔	7VXi	32180	2023-02-25	2021-11-12	3.4	2.35	—	2.0	0.002	0.49	0.0	0.04	7.29	0.00	2.125	3.01	0.00	4.3	95.5	0.1	-1.83	0.65	0.60	1.83	2.1	0.003	0.64	0.0	0.04	13.57	0.00	2.129	9.76	0.33	3.3	96.5	0.2	0.10	1.42	0.71	0.69	2.31	24570	3144	3	0	0	0	0	logfile
✔	3JCZ	6630	2023-02-24	2016-03-27	3.26	3.11	—	3.3	0.008	0.69	0.0	0.05	7.32	0.01	2.244	8.75	0.00	7.0	93.0	0.0	-4.42	0.77	0.85	4.34	3.3	0.003	0.61	0.0	0.04	13.77	0.00	2.108	9.79	0.28	4.4	95.6	0.0	-0.27	2.05	0.78	0.87	2.10	23286	2976	6	0	0	0	0	logfile
✔	7TRY	26103	2023-02-18	2022-01-31	3.7	4.15	—	4.0	0.004	0.80	0.0	0.05	7.34	0.01	2.261	3.38	0.00	1.7	98.3	0.0	1.03	0.67	0.74	1.05	4.0	0.004	0.79	0.0	0.05	14.01	0.00	2.080	16.82	0.74	3.3	96.7	0.0	1.27	2.53	0.69	0.79	0.74	8340	1211	6	0	0	0	0	logfile
✔	6DSo	8910	2023-02-17	2018-06-14	3.0	3.30	2.98	3.4	0.009	0.94	0.0	0.06	7.35	0.00	2.431	1.53	0.00	3.2	96.8	0.0	-4.46	0.49	0.81	6.10	3.3	0.004	0.69	0.0	0.04	15.62	0.00	2.146	10.22	0.35	8.8	91.2	0.0	-4.29	1.56	0.50	0.82	4.96	6588	828	12	0	0	0	0	logfile
✔	7WD9	32435	2023-02-27	2021-12-21	3.7	4.02	—	3.8	0.003	0.45	0.0	0.04	7.35	0.00	1.967	2.77	0.00	4.2	95.6	0.1	-1.79	0.57	0.42	0.74	3.8	0.003	0.67	0.0	0.04	13.71	0.00	1.827	13.36	0.18	5.5	94.4	0.1	-1.17	1.35	0.75	0.69	1.03	69720	4533	9	0	0	0	34404	logfile

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