Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6QPi	4614	2023-08-09	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.003	0.53	0.0	0.04	5.28	0.00	2.448	1.19	0.00	2.6	97.4	0.0	1.11	0.59	0.41	0.64	—	2288	462	2	0	0	0	0	logfile
✔	7MVY	24058	2023-08-19	2021-05-15	2.39	3.24	1.97	3.1	0.002	0.39	0.0	0.03	6.61	0.00	2.209	3.28	0.00	0.7	99.3	0.0	-0.54	0.72	0.64	0.92	3.0	0.004	0.62	0.0	0.04	14.21	0.00	1.966	12.50	1.86	4.0	96.0	0.0	1.26	1.65	0.76	0.75	2.15	26555	1694	2	0	0	0	13337	logfile
✔	7TJZ	25947	2023-08-16	2022-01-17	4.4	7.00	4.54	4.2	0.019	2.21	0.0	0.00	6.67	0.01	2.384	0.19	0.00	4.2	94.2	1.6	-0.41	0.58	0.63	—	4.2	0.017	1.19	0.0	0.00	6.51	0.01	2.047	16.64	0.00	13.2	86.4	0.3	-1.19	0.80	0.82	0.83	—	20228	5056	27	0	0	0	0	logfile
✔	7TK8	25960	2023-08-16	2022-01-17	4.7	7.79	12.86	4.4	0.019	2.21	0.0	0.00	6.68	0.01	2.390	0.08	0.00	4.1	94.4	1.5	-0.46	0.60	0.61	—	4.4	0.007	1.06	0.0	0.00	6.46	0.01	1.965	24.73	0.00	11.5	88.2	0.3	-0.96	1.58	0.81	0.81	—	20227	5056	27	0	0	0	0	logfile
✔	7TKP	25977	2023-08-16	2022-01-17	4.6	7.57	4.97	4.4	0.019	2.20	0.0	0.00	6.68	0.01	2.352	0.12	0.00	4.2	94.5	1.3	-0.50	0.60	0.63	—	4.4	0.004	0.83	0.0	0.00	5.67	0.00	2.069	13.64	0.00	9.3	90.5	0.2	-0.09	0.76	0.78	0.81	—	20228	5056	27	0	0	0	0	logfile
✔	6YW7	10960	2023-08-09	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	6.70	0.01	2.034	2.17	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.003	1.01	0.0	0.02	5.70	0.00	2.420	14.13	0.00	13.2	86.6	0.2	-3.90	6.17	0.81	0.75	—	5426	1788	9	0	2	0	0	logfile
✔	4UQ8	2676	2023-08-20	2014-06-21	4.95	5.05	4.64	4.9	0.012	2.07	23.0	1.38	6.71	0.01	1.032	64.12	25.00	0.0	0.0	0.0	—	0.57	0.75	—	4.9	0.013	2.54	0.0	0.41	5.47	0.00	2.110	23.19	0.00	0.0	0.0	0.0	—	2.11	0.61	0.83	—	28647	33	54	0	5686	0	0	logfile
✔	7TKQ	25978	2023-08-16	2022-01-17	4.5	7.57	4.53	4.3	0.019	2.21	0.0	0.00	6.72	0.01	2.371	0.08	0.00	4.0	94.5	1.5	-0.48	0.59	0.61	—	4.3	0.009	1.21	0.0	0.00	7.52	0.01	1.933	34.86	0.00	13.6	85.9	0.5	-2.21	0.83	0.82	0.83	—	20228	5056	27	0	0	0	0	logfile
✔	7TKo	25976	2023-08-16	2022-01-17	4.8	7.71	5.39	4.4	0.019	2.23	0.0	0.00	6.74	0.01	2.314	0.12	0.00	4.8	93.9	1.4	-0.54	0.62	0.65	—	4.4	0.004	0.84	0.0	0.00	5.80	0.00	2.139	12.52	0.00	10.1	89.6	0.2	-0.46	0.84	0.84	0.82	—	20229	5056	27	0	0	0	0	logfile
✔	7TJY	25946	2023-08-16	2022-01-17	3.8	4.84	3.78	3.6	0.020	2.29	0.0	0.00	6.75	0.01	2.333	0.12	0.00	4.3	94.3	1.5	-0.54	0.59	0.68	—	3.6	0.004	0.79	0.0	0.00	4.84	0.00	2.161	3.93	0.00	9.8	90.0	0.3	0.68	1.48	0.82	0.86	—	20228	5056	27	0	0	0	0	logfile
✔	7TKM	25974	2023-08-16	2022-01-17	4.5	7.58	4.88	4.3	0.019	2.22	0.0	0.00	6.78	0.01	2.385	0.12	0.00	4.3	94.2	1.5	-0.44	0.59	0.59	—	4.3	0.004	0.82	0.0	0.00	5.62	0.00	2.105	12.83	0.00	9.6	90.0	0.3	-0.78	1.55	0.82	0.81	—	20227	5056	27	0	0	0	0	logfile
✔	7RAK	24363	2023-08-11	2021-07-01	3.9	4.13	—	4.1	0.003	0.61	0.0	0.04	6.78	0.00	2.283	4.06	0.00	14.0	85.0	1.0	-3.87	0.62	0.61	0.78	4.1	0.002	0.61	0.0	0.04	12.16	0.00	2.263	7.67	0.25	5.0	94.8	0.1	-1.25	1.31	0.71	0.75	0.55	61296	8112	32	0	16	0	0	logfile
✔	8G0D	29654	2023-08-16	2023-01-31	2.9	3.84	3.02	2.9	0.005	0.87	0.0	0.18	6.79	0.00	1.844	0.67	0.00	2.6	97.3	0.0	0.74	0.68	0.65	—	2.9	0.004	0.76	0.0	0.08	6.41	0.00	1.793	2.47	0.00	7.3	92.7	0.0	0.44	1.63	0.80	0.81	—	19874	4860	30	0	16	0	0	logfile
✔	6MZJ	9303	2023-08-12	2018-11-05	4.8	5.06	—	4.4	0.015	1.59	0.0	0.09	6.80	0.00	2.352	1.32	2.65	3.2	96.6	0.1	-0.18	0.70	0.72	—	4.5	0.006	1.16	0.0	0.05	7.35	0.01	2.136	10.22	0.00	12.0	87.9	0.1	-2.28	2.22	0.77	0.67	—	12653	2088	52	0	149	0	0	logfile
✔	8G0C	29653	2023-08-16	2023-01-31	2.8	3.69	2.84	2.8	0.005	0.85	0.0	0.17	6.80	0.00	1.814	0.39	0.00	2.6	97.3	0.0	0.98	0.69	0.67	—	2.8	0.006	0.79	0.0	0.07	5.95	0.00	1.778	2.08	0.00	9.1	90.9	0.0	0.66	1.21	0.79	0.80	—	19874	4860	30	0	16	0	0	logfile
✔	6WTH	21896	2023-08-12	2020-05-02	3.06	3.56	3.08	3.4	0.002	0.56	0.0	0.05	6.81	0.00	2.217	4.94	0.84	2.2	97.8	0.0	-3.50	0.72	0.75	3.88	3.4	0.003	0.55	0.0	0.04	12.70	0.00	2.208	6.90	0.37	4.0	96.0	0.0	-0.70	0.59	0.77	0.87	3.85	11740	1183	12	0	422	0	0	logfile
✔	3JCF	6551	2023-08-13	2015-12-11	3.8	4.02	—	3.9	0.004	1.03	0.0	0.04	6.81	0.00	2.057	8.41	0.00	4.6	95.4	0.0	-1.63	0.74	0.81	2.11	3.9	0.003	0.67	0.0	0.04	12.60	0.00	1.983	12.49	0.06	3.4	96.6	0.0	1.84	0.69	0.75	0.85	1.65	14228	1745	10	0	13	0	0	logfile
✔	7TKH	25969	2023-08-16	2022-01-17	4.4	7.29	4.45	4.2	0.019	2.19	0.0	0.00	6.81	0.01	2.385	0.08	0.00	3.9	94.7	1.4	-0.35	0.59	0.62	—	4.2	0.018	1.32	0.0	0.00	7.42	0.01	1.974	32.32	0.00	15.1	84.5	0.3	-2.28	1.70	0.83	0.84	—	20228	5056	27	0	0	0	0	logfile
✘	6PM5	20388	2023-08-13	2019-07-01	3.1	3.38	—	3.4	0.002	0.49	0.0	0.06	6.82	0.00	2.275	4.99	0.00	2.4	97.6	0.0	-4.42	0.52	0.78	3.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13975	1735	15	0	15	0	0	logfile
✔	7JG7	22313	2023-08-15	2020-07-18	3.5	2.41	3.57	3.4	0.008	1.54	0.0	0.00	6.82	0.01	2.433	0.00	0.00	2.9	96.9	0.1	-0.73	0.63	0.55	—	2.3	0.006	1.16	0.0	0.00	7.34	0.01	2.119	4.50	0.00	14.7	85.1	0.1	-2.00	1.65	0.74	0.72	—	19316	4818	20	0	11	0	0	logfile

• ← previous
• Page 4 of 542
• next →