Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MSX	23971	2022-11-29	2021-05-12	3.15	3.24	3.04	3.2	0.008	0.62	0.0	0.05	10.30	0.00	2.385	0.95	0.00	1.9	98.1	0.0	0.06	0.77	0.85	3.76	3.2	0.003	0.49	0.0	0.04	15.13	0.00	2.210	5.43	0.49	2.1	97.9	0.0	1.21	1.12	0.79	0.87	3.16	3706	473	1	0	3	0	0	logfile
✔	6NT5	0502	2022-11-29	2019-01-28	4.1	4.28	—	4.1	0.006	0.93	0.0	0.05	10.32	0.01	2.300	3.81	0.41	4.7	95.3	0.0	-2.40	0.73	0.82	—	4.1	0.002	0.57	0.0	0.04	12.52	0.00	2.325	7.08	0.00	2.0	98.0	0.0	1.95	1.16	0.73	0.81	—	4586	584	2	0	0	0	0	logfile
✔	5VRF	8728	2022-11-29	2017-05-10	4.1	4.21	—	4.1	0.011	1.28	0.0	0.06	10.38	0.01	1.994	8.85	0.00	2.5	97.5	0.0	-4.10	0.82	0.83	—	4.1	0.003	0.72	0.0	0.04	13.49	0.00	1.994	11.46	0.00	1.8	98.2	0.0	2.10	3.54	0.83	0.83	—	4378	564	4	0	8	0	0	logfile
✔	7RU8	24699	2022-11-29	2021-08-16	3.8	4.10	3.80	3.9	0.022	1.86	0.0	0.11	10.41	0.01	2.356	1.12	0.00	6.1	93.9	0.0	-0.23	0.77	0.72	2.53	3.9	0.003	0.76	0.0	0.05	14.52	0.00	2.121	13.71	0.00	8.6	91.4	0.0	-1.53	1.49	0.78	0.75	1.01	3198	405	5	0	3	0	0	logfile
✘	7SoC	25266	2022-11-29	2021-10-29	3.3	3.48	3.25	3.5	0.010	1.21	0.0	0.07	10.55	0.00	2.526	0.89	0.00	1.9	98.1	0.0	0.30	0.70	0.86	4.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3448	433	5	0	7	0	0	logfile
✔	7N5G	24189	2022-11-29	2021-06-05	2.4	2.16	2.42	1.5	0.022	1.51	0.0	0.09	10.57	0.01	2.386	0.34	0.00	0.8	99.2	0.0	1.84	0.40	0.79	3.64	1.5	0.003	0.56	0.0	0.04	16.74	0.00	2.228	4.78	2.28	1.4	98.6	0.0	2.95	1.21	0.39	0.80	2.58	2926	371	1	0	1	0	0	logfile
✔	7DCQ	30639	2022-11-29	2020-10-26	2.9	3.09	—	3.1	0.006	0.95	1.0	0.06	10.61	0.01	2.378	4.74	0.85	4.1	95.9	0.0	-3.49	0.70	0.81	4.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5197	653	1	0	0	0	0	logfile
✔	7USB	26731	2022-11-29	2022-04-23	3.1	3.28	3.18	3.3	0.012	1.70	0.0	0.11	10.61	0.01	2.590	1.61	1.39	5.5	94.5	0.0	-0.28	0.59	0.76	5.40	3.3	0.003	0.63	0.0	0.05	13.28	0.00	2.383	4.82	0.00	4.5	95.5	0.0	-1.64	0.58	0.61	0.83	5.47	1661	213	3	0	5	0	0	logfile
✔	7QKG	14041	2022-11-29	2021-12-17	3.36	3.19	3.09	3.4	0.010	2.03	0.0	0.10	10.76	0.01	2.528	0.00	0.00	6.4	93.6	0.0	-1.98	0.38	0.80	4.23	3.5	0.003	0.60	0.0	0.05	13.51	0.00	2.262	5.27	0.00	2.6	97.4	0.0	-1.55	1.17	0.36	0.83	4.87	2469	162	3	0	0	0	1278	logfile
✔	7QK2	14029	2022-11-29	2021-12-17	2.61	2.61	2.37	2.7	0.011	1.86	10.0	0.11	10.81	0.01	2.499	0.76	0.00	4.1	95.9	0.0	-1.51	0.37	0.86	6.04	2.7	0.003	0.65	0.0	0.05	17.08	0.00	2.113	4.99	2.96	2.7	97.3	0.0	-1.83	1.72	0.37	0.87	5.30	3246	426	6	0	0	0	0	logfile
✔	7N8i	24237	2022-11-29	2021-06-14	3.0	3.22	3.02	3.2	0.011	1.22	0.0	0.07	10.84	0.01	2.309	0.85	0.26	1.6	98.4	0.0	1.04	0.75	0.87	5.46	3.2	0.008	0.71	0.0	0.05	14.99	0.00	2.096	5.10	1.29	2.8	97.2	0.0	1.02	1.00	0.75	0.91	5.65	3600	445	3	0	5	0	0	logfile
✔	6R4R	4727	2022-11-29	2019-03-23	3.4	3.01	1.77	3.8	0.008	1.43	0.0	0.08	10.87	0.01	2.308	6.73	0.00	12.0	88.0	0.0	-5.16	0.32	0.64	5.08	3.7	0.005	0.82	0.0	0.05	16.51	0.00	2.111	15.74	2.27	9.1	90.9	0.0	-4.78	3.89	0.31	0.67	3.65	4312	539	7	0	0	0	0	logfile
✔	7QL2	14061	2022-11-29	2021-12-19	2.95	2.96	2.65	3.1	0.010	2.11	2.0	0.11	10.98	0.01	2.674	0.00	0.00	7.6	92.4	0.0	-2.82	0.30	0.74	4.50	3.4	0.003	0.61	0.0	0.05	12.64	0.00	2.504	1.31	2.22	9.0	91.0	0.0	-2.99	1.14	0.23	0.73	4.06	2286	150	3	0	0	0	1179	logfile
✔	7QL1	14060	2022-11-29	2021-12-19	3.34	3.41	3.13	3.4	0.011	2.01	0.0	0.10	11.06	0.01	2.654	1.47	0.00	7.5	92.5	0.0	-3.09	0.42	0.83	4.57	3.4	0.004	0.73	0.0	0.05	15.67	0.00	2.155	10.56	0.00	3.3	96.7	0.0	-2.40	1.74	0.37	0.79	4.22	1671	219	3	0	0	0	0	logfile
✔	6F1Z	4172	2022-11-29	2017-11-23	3.4	4.16	—	3.4	0.004	0.97	0.0	0.06	11.17	0.01	2.264	12.14	0.81	8.6	91.4	0.0	-4.21	0.64	0.68	-1.41	3.4	0.004	1.01	0.0	0.05	16.44	0.01	2.105	24.74	0.81	7.8	92.2	0.0	-1.37	1.33	0.66	0.75	-0.09	2138	265	4	0	0	0	0	logfile
✔	7P2P	13171	2022-11-29	2021-07-06	4.9	4.40	5.09	4.3	0.005	1.08	0.0	0.07	11.21	0.01	2.325	4.37	0.19	8.1	91.9	0.0	-3.94	0.76	0.66	—	4.2	0.003	0.83	0.0	0.05	12.94	0.01	2.198	17.60	0.19	7.4	92.6	0.0	-1.97	1.19	0.78	0.72	—	4783	587	5	0	5	0	0	logfile
✔	6N3B	9350	2022-11-29	2018-11-14	3.8	3.75	—	4.0	0.010	1.21	0.0	0.05	11.40	0.01	2.253	20.70	0.00	13.7	86.3	0.0	-5.17	0.41	0.71	2.90	4.0	0.005	0.87	0.0	0.04	16.51	0.01	2.102	26.34	1.51	13.2	86.8	0.0	-5.29	1.48	0.42	0.71	1.88	2735	385	10	0	0	0	0	logfile
✔	7P6D	13226	2022-11-29	2021-07-15	3.3	3.43	3.17	3.5	0.003	0.66	0.0	0.05	11.41	0.00	2.575	2.25	0.00	2.7	97.3	0.0	-2.54	0.55	0.77	3.72	3.5	0.009	0.80	0.0	0.06	13.82	0.00	2.022	7.32	0.81	13.6	86.0	0.4	-3.19	2.42	0.47	0.83	4.68	4340	575	5	0	0	0	0	logfile
✔	7TAS	25783	2022-11-29	2021-12-21	3.2	3.49	3.25	3.4	0.013	1.49	0.0	0.09	11.42	0.01	2.452	3.63	1.69	3.9	96.1	0.0	-1.01	0.68	0.83	4.31	3.4	0.003	0.66	0.0	0.04	13.84	0.00	2.239	5.45	0.34	3.9	96.1	0.0	-0.14	0.52	0.65	0.85	4.09	3147	417	4	0	3	0	0	logfile
✔	7JV2	22491	2022-11-29	2020-08-20	3.5	3.49	3.41	3.7	0.015	1.39	0.0	0.08	11.43	0.01	2.587	0.00	1.32	3.6	96.4	0.0	0.82	0.69	0.74	3.48	3.7	0.005	0.81	0.0	0.04	14.94	0.00	2.223	15.46	0.44	6.9	93.1	0.0	-1.20	1.29	0.70	0.77	3.82	2151	282	3	0	0	0	0	logfile

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