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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6N4B | 0745 | 2023-02-18 | 2018-11-18 | 3.0 | 3.44 | — | 39.0 | 0.011 | 1.40 | 4.0 | 0.09 | 9.55 | 0.01 | 1.855 | 20.11 | 0.84 | 2.7 | 97.3 | 0.0 | -2.27 | 0.08 | 0.01 | 0.16 | 3.4 | 0.004 | 0.81 | 0.0 | 0.04 | 12.42 | 0.00 | 2.081 | 12.08 | 0.96 | 5.4 | 94.6 | 0.0 | -0.45 | 1.11 | 0.13 | 0.14 | 0.19 | 8453 | 1121 | 6 | 0 | 3 | 0 | 0 | logfile |
✔ | 7W0C | 32238 | 2023-02-21 | 2021-11-18 | 3.93 | 4.02 | — | 3.8 | 0.002 | 0.55 | 0.0 | 0.04 | 13.50 | 0.00 | 2.105 | 14.31 | 0.07 | 4.2 | 95.8 | 0.1 | -0.14 | 0.86 | 0.73 | 0.17 | 3.8 | 0.003 | 0.63 | 0.0 | 0.04 | 15.18 | 0.00 | 2.147 | 16.00 | 0.15 | 4.3 | 95.6 | 0.1 | -0.03 | 0.46 | 0.86 | 0.74 | 0.26 | 13663 | 1492 | 5 | 72 | 2 | 0 | 0 | logfile |
✔ | 7MVU | 24056 | 2023-02-25 | 2021-05-15 | 3.77 | 4.87 | 3.73 | 4.0 | 0.002 | 0.36 | 0.0 | 0.03 | 6.38 | 0.00 | 2.187 | 3.55 | 0.00 | 1.1 | 98.9 | 0.0 | -0.33 | 0.85 | 0.73 | 0.19 | 4.0 | 0.003 | 0.58 | 0.0 | 0.03 | 11.75 | 0.00 | 1.882 | 11.93 | 0.22 | 3.2 | 96.8 | 0.0 | 2.54 | 2.06 | 0.88 | 0.82 | 0.36 | 25645 | 1604 | 2 | 0 | 0 | 0 | 12841 | logfile |
✔ | 7MF3 | 23810 | 2023-02-24 | 2021-04-08 | 3.4 | 4.14 | — | 3.2 | 0.003 | 0.68 | 0.0 | 0.04 | 15.41 | 0.00 | 1.985 | 17.34 | 0.04 | 6.5 | 93.5 | 0.0 | -0.34 | 0.90 | 0.73 | 0.19 | 3.1 | 0.003 | 0.72 | 0.0 | 0.04 | 17.39 | 0.00 | 1.957 | 17.25 | 0.24 | 7.0 | 93.0 | 0.0 | -0.87 | 1.45 | 0.91 | 0.74 | 0.04 | 22938 | 2822 | 12 | 0 | 8 | 0 | 0 | logfile |
✔ | 7FJo | 31625 | 2023-02-26 | 2021-08-04 | 3.34 | 3.72 | — | 3.5 | 0.012 | 1.56 | 4.0 | 0.09 | 12.63 | 0.02 | 1.277 | 9.35 | 3.26 | 7.2 | 92.4 | 0.4 | -1.06 | 0.55 | 0.36 | 0.19 | 3.5 | 0.005 | 0.75 | 1.0 | 0.05 | 14.55 | 0.00 | 2.122 | 10.66 | 0.26 | 5.0 | 94.9 | 0.1 | -0.24 | 1.91 | 0.78 | 0.82 | 1.93 | 28547 | 3640 | 12 | 0 | 25 | 0 | 0 | logfile |
✔ | 5Y4o | 6805 | 2023-02-20 | 2017-08-04 | 3.8 | 3.55 | — | 3.6 | 0.022 | 2.44 | 28.0 | 0.12 | 19.88 | 0.02 | 0.471 | 78.50 | 20.31 | 7.8 | 87.8 | 4.5 | -2.08 | 0.55 | 0.62 | 0.20 | 3.6 | 0.003 | 0.77 | 0.0 | 0.04 | 17.56 | 0.00 | 2.042 | 14.00 | 0.45 | 7.0 | 92.5 | 0.5 | -0.18 | 1.75 | 0.59 | 0.72 | 1.52 | 12341 | 1561 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PMJ | 20395 | 2023-02-22 | 2019-07-02 | 3.91 | 5.34 | — | 4.4 | 0.011 | 1.21 | 0.0 | 0.06 | 15.82 | 0.01 | 2.011 | 11.04 | 0.31 | 10.4 | 89.3 | 0.3 | -4.41 | 0.67 | 0.43 | 0.20 | 4.4 | 0.003 | 0.71 | 0.0 | 0.04 | 17.51 | 0.00 | 1.817 | 21.36 | 0.34 | 8.4 | 91.4 | 0.1 | -2.26 | 1.66 | 0.89 | 0.77 | 0.03 | 57984 | 3453 | 10 | 110 | 4 | 0 | 28609 | logfile |
✔ | 6PMi | 20394 | 2023-02-22 | 2019-07-02 | 3.86 | 4.66 | — | 4.1 | 0.012 | 1.26 | 0.0 | 0.06 | 15.81 | 0.01 | 1.949 | 12.35 | 0.24 | 10.7 | 88.9 | 0.4 | -4.48 | 0.69 | 0.51 | 0.20 | 4.1 | 0.004 | 0.70 | 0.0 | 0.04 | 17.32 | 0.00 | 1.819 | 21.88 | 0.54 | 10.0 | 89.9 | 0.1 | -2.32 | 1.00 | 0.86 | 0.77 | 0.35 | 57985 | 3453 | 10 | 110 | 4 | 0 | 28610 | logfile |
✔ | 7CMi | 30407 | 2023-02-18 | 2020-07-27 | 2.9 | 3.36 | — | 3.3 | 0.006 | 1.00 | 0.0 | 0.05 | 15.26 | 0.01 | 1.904 | 7.49 | 1.44 | 7.2 | 91.4 | 1.4 | -5.99 | 0.62 | 0.67 | 0.20 | 3.3 | 0.003 | 0.75 | 0.0 | 0.04 | 16.56 | 0.00 | 2.139 | 8.70 | 3.15 | 6.6 | 93.3 | 0.1 | -0.26 | 1.08 | 0.66 | 0.83 | 1.44 | 7353 | 928 | 7 | 0 | 10 | 6 | 0 | logfile |
✔ | 6FLQ | 4275 | 2023-02-27 | 2018-01-26 | 3.6 | 3.93 | 3.76 | 40.0 | 0.016 | 1.33 | 0.0 | 0.07 | 14.73 | 0.01 | 1.897 | 5.97 | 1.40 | 10.8 | 89.1 | 0.1 | -4.32 | 0.16 | 0.02 | 0.21 | 3.8 | 0.009 | 1.33 | 0.0 | 0.06 | 17.55 | 0.01 | 1.844 | 30.47 | 0.70 | 13.4 | 86.4 | 0.2 | -2.72 | 2.16 | 0.28 | 0.24 | 0.30 | 30201 | 3868 | 10 | 91 | 3 | 0 | 0 | logfile |
✔ | 6MWQ | 9277 | 2023-02-24 | 2018-10-30 | 3.0 | 3.33 | 2.89 | 3.1 | 0.001 | 0.36 | 0.0 | 0.04 | 4.66 | 0.00 | 2.321 | 4.19 | 0.13 | 11.0 | 87.5 | 1.5 | -4.81 | 0.54 | 0.39 | 0.22 | 3.1 | 0.003 | 0.72 | 0.0 | 0.04 | 13.43 | 0.00 | 2.152 | 8.38 | 1.78 | 4.1 | 95.7 | 0.2 | -1.12 | 1.34 | 0.78 | 0.87 | 1.94 | 22072 | 2873 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QPG | 14120 | 2023-02-22 | 2022-01-04 | 3.9 | 4.08 | — | 2.8 | 0.002 | 0.54 | 0.0 | 0.04 | 10.05 | 0.00 | 2.093 | 6.85 | 0.00 | 2.7 | 97.3 | 0.0 | 0.34 | 0.78 | 0.58 | 0.22 | 2.3 | 0.003 | 0.67 | 0.0 | 0.04 | 13.10 | 0.00 | 2.137 | 11.17 | 0.11 | 3.0 | 97.0 | 0.0 | 1.12 | 0.84 | 0.88 | 0.76 | 0.33 | 57164 | 7156 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XWQ | 10635 | 2023-02-19 | 2020-01-24 | 3.41 | 4.27 | — | 4.0 | 0.003 | 0.61 | 0.0 | 0.04 | 13.42 | 0.00 | 2.171 | 10.53 | 0.00 | 3.5 | 96.2 | 0.2 | -2.80 | 0.73 | 0.80 | 0.22 | 4.0 | 0.003 | 0.80 | 0.0 | 0.04 | 15.44 | 0.00 | 2.167 | 14.29 | 0.30 | 3.8 | 96.2 | 0.0 | 1.16 | 1.16 | 0.72 | 0.84 | 0.30 | 9572 | 1281 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MiD | 23847 | 2023-02-19 | 2021-04-16 | 3.56 | 4.10 | — | 3.9 | 0.010 | 1.02 | 0.0 | 0.06 | 20.24 | 0.01 | 0.918 | 14.61 | 5.73 | 8.6 | 91.3 | 0.1 | -1.30 | 0.76 | 0.66 | 0.22 | 4.0 | 0.003 | 0.72 | 0.0 | 0.04 | 20.05 | 0.00 | 2.148 | 11.09 | 0.11 | 5.9 | 94.1 | 0.0 | 0.00 | 1.89 | 0.81 | 0.81 | 0.91 | 9789 | 1080 | 11 | 57 | 6 | 0 | 0 | logfile |
✔ | 7CHH | 30374 | 2023-02-26 | 2020-07-05 | 3.49 | 2.44 | — | 20.0 | 0.007 | 1.09 | 0.0 | 0.06 | 15.08 | 0.01 | 2.182 | 4.90 | 3.56 | 5.2 | 94.7 | 0.1 | -2.03 | 0.17 | 0.02 | 0.23 | 2.3 | 0.012 | 1.20 | 0.0 | 0.06 | 16.17 | 0.01 | 1.881 | 22.73 | 0.74 | 8.9 | 91.0 | 0.1 | -2.21 | 1.48 | 0.21 | 0.15 | 0.59 | 29029 | 3704 | 17 | 0 | 41 | 0 | 0 | logfile |
✔ | 7XMX | 33307 | 2023-02-26 | 2022-04-27 | 3.62 | 3.63 | 3.44 | 22.0 | 0.011 | 1.29 | 7.0 | 0.09 | 12.50 | 0.01 | 1.407 | 4.82 | 1.34 | 6.6 | 93.3 | 0.1 | -0.95 | 0.29 | 0.01 | 0.23 | 20.0 | 0.003 | 0.68 | 0.0 | 0.04 | 14.28 | 0.00 | 2.027 | 11.86 | 0.35 | 5.9 | 94.0 | 0.1 | -1.06 | 1.13 | 0.36 | 0.17 | 0.19 | 28727 | 3700 | 12 | 0 | 24 | 0 | 0 | logfile |
✔ | 6NDY | 0443 | 2023-02-20 | 2018-12-14 | 3.6 | 3.70 | — | 3.6 | 0.005 | 0.89 | 0.0 | 0.05 | 14.71 | 0.01 | 2.037 | 4.67 | 0.00 | 5.9 | 94.1 | 0.0 | -3.78 | 0.66 | 0.54 | 0.23 | 3.6 | 0.003 | 0.72 | 0.0 | 0.04 | 16.31 | 0.00 | 0.894 | 11.65 | 0.52 | 5.9 | 94.1 | 0.0 | -0.22 | 1.30 | 0.79 | 0.80 | 0.84 | 12531 | 1596 | 11 | 0 | 20 | 0 | 0 | logfile |
✔ | 8GWB | 34308 | 2023-02-24 | 2022-09-16 | 2.75 | 2.95 | 2.85 | 25.0 | 0.009 | 1.07 | 1.0 | 0.05 | 16.02 | 0.01 | 1.556 | 16.84 | 2.25 | 7.5 | 92.3 | 0.2 | -2.40 | 0.29 | 0.01 | 0.23 | 25.0 | 0.003 | 0.74 | 0.0 | 0.04 | 16.77 | 0.00 | 2.117 | 17.29 | 2.69 | 7.5 | 92.4 | 0.1 | -1.54 | 1.60 | 0.34 | 0.15 | 0.46 | 21879 | 2655 | 16 | 54 | 10 | 7 | 0 | logfile |
✔ | 7RZY | 24783 | 2023-02-22 | 2021-08-28 | 3.5 | 2.57 | 3.55 | 4.0 | 0.014 | 1.83 | 0.0 | 0.08 | 14.40 | 0.00 | 2.491 | 1.92 | 0.80 | 10.2 | 88.4 | 1.4 | -2.89 | 0.55 | 0.40 | 0.25 | 3.5 | 0.004 | 0.85 | 0.0 | 0.04 | 17.34 | 0.01 | 2.066 | 15.14 | 0.58 | 8.2 | 91.3 | 0.6 | -1.30 | 1.41 | 0.72 | 0.67 | 1.20 | 17458 | 2177 | 13 | 0 | 7 | 0 | 0 | logfile |
✔ | 7RLJ | 24532 | 2023-02-27 | 2021-07-23 | 3.8 | 4.28 | — | 3.7 | 0.004 | 0.92 | 0.0 | 0.05 | 14.45 | 0.01 | 2.067 | 15.59 | 0.01 | 6.2 | 93.2 | 0.6 | -2.67 | 0.86 | 0.79 | 0.25 | 3.7 | 0.005 | 0.77 | 0.0 | 0.05 | 15.87 | 0.00 | 1.879 | 19.46 | 0.61 | 8.1 | 91.8 | 0.1 | -1.32 | 1.25 | 0.88 | 0.84 | 0.87 | 69156 | 8736 | 24 | 0 | 36 | 0 | 0 | logfile |