Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6N4B	0745	2023-02-18	2018-11-18	3.0	3.44	—	39.0	0.011	1.40	4.0	0.09	9.55	0.01	1.855	20.11	0.84	2.7	97.3	0.0	-2.27	0.08	0.01	0.16	3.4	0.004	0.81	0.0	0.04	12.42	0.00	2.081	12.08	0.96	5.4	94.6	0.0	-0.45	1.11	0.13	0.14	0.19	8453	1121	6	0	3	0	0	logfile
✔	7W0C	32238	2023-02-21	2021-11-18	3.93	4.02	—	3.8	0.002	0.55	0.0	0.04	13.50	0.00	2.105	14.31	0.07	4.2	95.8	0.1	-0.14	0.86	0.73	0.17	3.8	0.003	0.63	0.0	0.04	15.18	0.00	2.147	16.00	0.15	4.3	95.6	0.1	-0.03	0.46	0.86	0.74	0.26	13663	1492	5	72	2	0	0	logfile
✔	7MVU	24056	2023-02-25	2021-05-15	3.77	4.87	3.73	4.0	0.002	0.36	0.0	0.03	6.38	0.00	2.187	3.55	0.00	1.1	98.9	0.0	-0.33	0.85	0.73	0.19	4.0	0.003	0.58	0.0	0.03	11.75	0.00	1.882	11.93	0.22	3.2	96.8	0.0	2.54	2.06	0.88	0.82	0.36	25645	1604	2	0	0	0	12841	logfile
✔	7MF3	23810	2023-02-24	2021-04-08	3.4	4.14	—	3.2	0.003	0.68	0.0	0.04	15.41	0.00	1.985	17.34	0.04	6.5	93.5	0.0	-0.34	0.90	0.73	0.19	3.1	0.003	0.72	0.0	0.04	17.39	0.00	1.957	17.25	0.24	7.0	93.0	0.0	-0.87	1.45	0.91	0.74	0.04	22938	2822	12	0	8	0	0	logfile
✔	7FJo	31625	2023-02-26	2021-08-04	3.34	3.72	—	3.5	0.012	1.56	4.0	0.09	12.63	0.02	1.277	9.35	3.26	7.2	92.4	0.4	-1.06	0.55	0.36	0.19	3.5	0.005	0.75	1.0	0.05	14.55	0.00	2.122	10.66	0.26	5.0	94.9	0.1	-0.24	1.91	0.78	0.82	1.93	28547	3640	12	0	25	0	0	logfile
✔	5Y4o	6805	2023-02-20	2017-08-04	3.8	3.55	—	3.6	0.022	2.44	28.0	0.12	19.88	0.02	0.471	78.50	20.31	7.8	87.8	4.5	-2.08	0.55	0.62	0.20	3.6	0.003	0.77	0.0	0.04	17.56	0.00	2.042	14.00	0.45	7.0	92.5	0.5	-0.18	1.75	0.59	0.72	1.52	12341	1561	7	0	0	0	0	logfile
✔	6PMJ	20395	2023-02-22	2019-07-02	3.91	5.34	—	4.4	0.011	1.21	0.0	0.06	15.82	0.01	2.011	11.04	0.31	10.4	89.3	0.3	-4.41	0.67	0.43	0.20	4.4	0.003	0.71	0.0	0.04	17.51	0.00	1.817	21.36	0.34	8.4	91.4	0.1	-2.26	1.66	0.89	0.77	0.03	57984	3453	10	110	4	0	28609	logfile
✔	6PMi	20394	2023-02-22	2019-07-02	3.86	4.66	—	4.1	0.012	1.26	0.0	0.06	15.81	0.01	1.949	12.35	0.24	10.7	88.9	0.4	-4.48	0.69	0.51	0.20	4.1	0.004	0.70	0.0	0.04	17.32	0.00	1.819	21.88	0.54	10.0	89.9	0.1	-2.32	1.00	0.86	0.77	0.35	57985	3453	10	110	4	0	28610	logfile
✔	7CMi	30407	2023-02-18	2020-07-27	2.9	3.36	—	3.3	0.006	1.00	0.0	0.05	15.26	0.01	1.904	7.49	1.44	7.2	91.4	1.4	-5.99	0.62	0.67	0.20	3.3	0.003	0.75	0.0	0.04	16.56	0.00	2.139	8.70	3.15	6.6	93.3	0.1	-0.26	1.08	0.66	0.83	1.44	7353	928	7	0	10	6	0	logfile
✔	6FLQ	4275	2023-02-27	2018-01-26	3.6	3.93	3.76	40.0	0.016	1.33	0.0	0.07	14.73	0.01	1.897	5.97	1.40	10.8	89.1	0.1	-4.32	0.16	0.02	0.21	3.8	0.009	1.33	0.0	0.06	17.55	0.01	1.844	30.47	0.70	13.4	86.4	0.2	-2.72	2.16	0.28	0.24	0.30	30201	3868	10	91	3	0	0	logfile
✔	6MWQ	9277	2023-02-24	2018-10-30	3.0	3.33	2.89	3.1	0.001	0.36	0.0	0.04	4.66	0.00	2.321	4.19	0.13	11.0	87.5	1.5	-4.81	0.54	0.39	0.22	3.1	0.003	0.72	0.0	0.04	13.43	0.00	2.152	8.38	1.78	4.1	95.7	0.2	-1.12	1.34	0.78	0.87	1.94	22072	2873	8	0	0	0	0	logfile
✔	7QPG	14120	2023-02-22	2022-01-04	3.9	4.08	—	2.8	0.002	0.54	0.0	0.04	10.05	0.00	2.093	6.85	0.00	2.7	97.3	0.0	0.34	0.78	0.58	0.22	2.3	0.003	0.67	0.0	0.04	13.10	0.00	2.137	11.17	0.11	3.0	97.0	0.0	1.12	0.84	0.88	0.76	0.33	57164	7156	6	0	0	0	0	logfile
✔	6XWQ	10635	2023-02-19	2020-01-24	3.41	4.27	—	4.0	0.003	0.61	0.0	0.04	13.42	0.00	2.171	10.53	0.00	3.5	96.2	0.2	-2.80	0.73	0.80	0.22	4.0	0.003	0.80	0.0	0.04	15.44	0.00	2.167	14.29	0.30	3.8	96.2	0.0	1.16	1.16	0.72	0.84	0.30	9572	1281	6	0	0	0	0	logfile
✔	7MiD	23847	2023-02-19	2021-04-16	3.56	4.10	—	3.9	0.010	1.02	0.0	0.06	20.24	0.01	0.918	14.61	5.73	8.6	91.3	0.1	-1.30	0.76	0.66	0.22	4.0	0.003	0.72	0.0	0.04	20.05	0.00	2.148	11.09	0.11	5.9	94.1	0.0	0.00	1.89	0.81	0.81	0.91	9789	1080	11	57	6	0	0	logfile
✔	7CHH	30374	2023-02-26	2020-07-05	3.49	2.44	—	20.0	0.007	1.09	0.0	0.06	15.08	0.01	2.182	4.90	3.56	5.2	94.7	0.1	-2.03	0.17	0.02	0.23	2.3	0.012	1.20	0.0	0.06	16.17	0.01	1.881	22.73	0.74	8.9	91.0	0.1	-2.21	1.48	0.21	0.15	0.59	29029	3704	17	0	41	0	0	logfile
✔	7XMX	33307	2023-02-26	2022-04-27	3.62	3.63	3.44	22.0	0.011	1.29	7.0	0.09	12.50	0.01	1.407	4.82	1.34	6.6	93.3	0.1	-0.95	0.29	0.01	0.23	20.0	0.003	0.68	0.0	0.04	14.28	0.00	2.027	11.86	0.35	5.9	94.0	0.1	-1.06	1.13	0.36	0.17	0.19	28727	3700	12	0	24	0	0	logfile
✔	6NDY	0443	2023-02-20	2018-12-14	3.6	3.70	—	3.6	0.005	0.89	0.0	0.05	14.71	0.01	2.037	4.67	0.00	5.9	94.1	0.0	-3.78	0.66	0.54	0.23	3.6	0.003	0.72	0.0	0.04	16.31	0.00	0.894	11.65	0.52	5.9	94.1	0.0	-0.22	1.30	0.79	0.80	0.84	12531	1596	11	0	20	0	0	logfile
✔	8GWB	34308	2023-02-24	2022-09-16	2.75	2.95	2.85	25.0	0.009	1.07	1.0	0.05	16.02	0.01	1.556	16.84	2.25	7.5	92.3	0.2	-2.40	0.29	0.01	0.23	25.0	0.003	0.74	0.0	0.04	16.77	0.00	2.117	17.29	2.69	7.5	92.4	0.1	-1.54	1.60	0.34	0.15	0.46	21879	2655	16	54	10	7	0	logfile
✔	7RZY	24783	2023-02-22	2021-08-28	3.5	2.57	3.55	4.0	0.014	1.83	0.0	0.08	14.40	0.00	2.491	1.92	0.80	10.2	88.4	1.4	-2.89	0.55	0.40	0.25	3.5	0.004	0.85	0.0	0.04	17.34	0.01	2.066	15.14	0.58	8.2	91.3	0.6	-1.30	1.41	0.72	0.67	1.20	17458	2177	13	0	7	0	0	logfile
✔	7RLJ	24532	2023-02-27	2021-07-23	3.8	4.28	—	3.7	0.004	0.92	0.0	0.05	14.45	0.01	2.067	15.59	0.01	6.2	93.2	0.6	-2.67	0.86	0.79	0.25	3.7	0.005	0.77	0.0	0.05	15.87	0.00	1.879	19.46	0.61	8.1	91.8	0.1	-1.32	1.25	0.88	0.84	0.87	69156	8736	24	0	36	0	0	logfile

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