Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6NEQ	9358	2023-11-15	2018-12-18	3.32	3.85	—	3.5	0.001	0.37	0.0	0.03	12.81	0.00	1.949	3.29	0.35	10.3	88.1	1.6	-2.42	0.69	0.51	0.07	3.5	0.004	0.69	0.0	0.04	16.41	0.00	2.052	13.48	0.54	6.0	93.9	0.1	-0.50	2.02	0.85	0.85	1.54	65776	5509	32	952	147	0	0	logfile
✘	6QoZ	4610	2023-11-17	2019-02-13	3.4	3.65	3.13	3.5	0.011	1.46	4.0	0.09	15.40	0.01	1.243	4.20	5.13	6.0	93.1	0.9	-3.28	0.40	0.62	0.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17987	2307	9	0	0	0	0	logfile
✔	6QS6	4624	2023-11-20	2019-02-20	3.9	4.03	2.44	4.0	0.011	1.09	0.0	0.06	10.53	0.01	2.187	6.85	0.07	8.2	91.8	0.0	-4.07	0.57	0.46	0.09	3.9	0.003	0.80	0.0	0.05	16.46	0.00	1.964	18.64	0.47	5.7	94.3	0.0	-0.45	1.40	0.74	0.77	0.63	28557	3568	13	0	35	0	0	logfile
✔	7EGC	31112	2023-11-14	2021-03-24	3.9	3.72	—	4.9	0.008	1.13	76.0	0.08	15.43	0.01	1.402	24.31	3.39	7.3	91.9	0.8	-3.59	0.43	0.10	0.10	3.1	0.008	0.96	3.0	0.05	16.79	0.01	1.880	20.83	0.49	7.3	92.4	0.3	-0.99	1.29	0.53	0.34	0.60	113129	13879	63	142	18	0	0	logfile
✔	7RTV	24690	2023-11-13	2021-08-15	3.96	4.06	—	4.1	0.004	0.76	0.0	0.05	14.21	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.004	0.91	0.0	0.04	16.58	0.00	2.168	18.02	0.32	3.3	96.7	0.0	2.73	1.76	0.41	0.64	0.28	2881	366	3	0	6	0	0	logfile
✔	5ZYA	6915	2023-11-16	2018-05-23	3.95	4.18	—	4.1	0.009	1.35	0.0	0.16	12.77	0.01	1.673	8.53	0.32	9.6	90.4	0.0	-4.57	0.67	0.52	0.10	4.0	0.004	0.91	0.0	0.06	16.17	0.00	2.043	16.94	0.49	6.5	93.5	0.0	-1.95	1.81	0.77	0.72	1.08	16957	2143	7	0	5	0	0	logfile
✔	7WTD	32779	2023-11-19	2022-02-04	3.9	5.03	—	4.3	0.023	1.20	1.0	0.05	15.55	0.01	0.990	21.59	1.15	7.3	92.6	0.1	-0.88	0.81	0.61	0.10	4.4	0.004	0.94	1.0	0.05	16.56	0.01	2.083	25.45	0.42	8.2	91.8	0.1	-1.39	4.65	0.85	0.72	0.20	27137	3491	6	0	4	0	0	logfile
✔	7TAX	25789	2023-11-19	2021-12-21	2.8	3.31	—	3.3	0.003	0.67	0.0	0.04	15.14	0.01	2.236	6.32	0.00	4.6	95.4	0.0	-0.99	0.64	0.56	0.11	3.2	0.003	0.68	0.0	0.04	17.73	0.00	2.119	12.65	1.88	5.0	95.0	0.0	-0.04	1.23	0.77	0.84	2.34	27855	3349	14	99	0	0	0	logfile
✔	6CXC	7774	2023-11-16	2018-04-02	3.9	4.14	—	4.0	0.006	1.03	0.0	0.06	10.78	0.01	2.198	9.05	0.29	6.2	93.8	0.0	-4.06	0.71	0.71	0.12	4.0	0.006	0.93	0.0	0.05	16.08	0.01	2.004	29.78	0.75	9.0	91.0	0.0	-2.59	2.15	0.72	0.74	0.04	15196	1945	18	0	6	0	0	logfile
✔	7EGB	31111	2023-11-14	2021-03-24	3.3	3.51	—	34.0	0.008	1.11	62.0	0.07	15.43	0.01	1.322	21.13	3.22	7.3	91.9	0.8	-3.64	0.32	0.02	0.13	3.0	0.006	0.97	0.0	0.05	16.75	0.01	1.840	21.35	0.38	8.6	91.2	0.2	-1.17	1.17	0.43	0.22	0.25	113098	13887	63	138	18	0	0	logfile
✘	7CQ7	30438	2023-11-16	2020-08-08	3.55	3.95	—	4.0	0.008	1.07	0.0	0.06	10.33	0.01	1.915	5.84	0.07	9.3	90.7	0.0	-4.47	0.39	0.42	0.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13810	1766	8	0	9	0	0	logfile
✔	8ANE	15540	2023-11-22	2022-08-05	3.2	2.95	3.14	3.2	0.003	0.64	0.0	0.04	15.69	0.01	2.198	3.35	0.93	4.6	95.4	0.0	-1.93	0.55	0.43	0.13	3.1	0.004	0.71	0.0	0.04	17.72	0.01	1.775	11.73	0.49	5.9	94.1	0.0	-1.40	2.66	0.66	0.64	1.04	36740	2212	8	66	0	0	18195	logfile
✔	7APK	11857	2023-11-18	2020-10-17	3.3	3.26	—	3.5	0.004	0.81	0.0	0.05	8.50	0.01	2.256	4.07	0.10	4.7	95.2	0.1	-2.73	0.41	0.22	0.13	2.9	0.007	0.80	0.0	0.04	13.05	0.00	2.079	13.91	0.12	6.6	93.3	0.1	0.97	1.14	0.50	0.44	0.92	72697	9893	30	0	74	0	0	logfile
✔	8D6X	27225	2023-11-17	2022-06-06	3.2	10.22	—	—	0.003	0.62	0.0	0.04	12.14	0.00	2.195	17.76	0.06	2.6	97.4	0.0	1.17	0.70	0.42	0.14	—	0.003	0.68	0.0	0.04	14.52	0.00	2.006	31.08	0.17	4.9	95.1	0.0	0.20	4.65	0.78	0.54	0.09	68362	8957	41	0	0	0	0	logfile
✔	8FN6	29306	2023-11-18	2022-12-27	3.7	3.97	3.74	4.0	0.003	0.65	0.0	0.04	17.05	0.00	2.196	11.03	0.60	6.0	93.9	0.0	-0.22	0.75	0.75	0.14	3.9	0.003	0.62	0.0	0.04	17.29	0.00	2.141	10.24	0.21	5.8	94.2	0.0	0.07	0.39	0.76	0.76	0.29	22421	2729	8	46	1	0	0	logfile
✔	7ZPJ	14855	2023-11-18	2022-04-27	3.81	3.24	3.86	6.5	0.004	0.86	0.0	0.05	13.19	0.01	2.159	2.94	0.67	3.3	96.7	0.0	0.22	0.54	0.33	0.15	2.2	0.003	0.68	0.0	0.04	15.41	0.01	1.919	13.12	0.67	4.4	95.6	0.0	-0.01	1.51	0.64	0.57	0.25	23479	1355	3	55	0	0	11508	logfile
✔	7RTU	24689	2023-11-13	2021-08-15	3.89	4.06	—	4.1	0.003	0.61	0.0	0.04	14.31	0.00	2.175	7.11	0.16	3.1	96.9	0.0	4.32	0.55	0.69	0.15	4.1	0.003	0.56	0.0	0.04	16.58	0.00	2.211	7.03	0.31	2.4	97.6	0.0	4.14	0.30	0.62	0.73	0.38	5962	754	6	0	12	0	0	logfile
✔	5X59	6704	2023-11-19	2017-02-15	3.7	3.77	—	3.7	0.011	1.66	0.0	0.08	14.57	0.01	1.477	23.24	4.97	13.2	85.4	1.3	-3.87	0.48	0.41	0.15	3.7	0.005	1.02	0.0	0.05	15.80	0.01	1.921	22.27	0.65	13.4	86.4	0.2	-2.42	1.59	0.60	0.65	1.20	26838	3423	6	0	30	0	0	logfile
✔	6H5i	0140	2023-11-13	2018-07-24	3.9	3.87	—	23.0	0.006	0.81	0.0	0.05	10.47	0.01	2.196	2.64	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.7	0.003	0.67	0.0	0.04	15.36	0.00	2.097	14.22	0.32	4.1	95.9	0.0	1.46	1.26	0.37	0.24	0.27	43900	5392	26	0	0	0	0	logfile
✔	4V91	2599	2023-11-17	2014-03-21	3.7	3.84	—	3.8	0.133	4.77	525.0	0.43	20.66	0.07	0.695	17.94	12.79	14.1	78.2	7.8	-5.39	0.33	0.36	0.15	3.8	0.033	1.32	0.0	0.04	17.36	0.02	2.043	15.54	0.99	8.6	90.8	0.7	-2.81	2.06	0.63	0.82	1.35	125665	6450	45	3482	0	0	0	logfile

• ← previous
• Page 4 of 528
• next →