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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6NEQ | 9358 | 2023-11-15 | 2018-12-18 | 3.32 | 3.85 | — | 3.5 | 0.001 | 0.37 | 0.0 | 0.03 | 12.81 | 0.00 | 1.949 | 3.29 | 0.35 | 10.3 | 88.1 | 1.6 | -2.42 | 0.69 | 0.51 | 0.07 | 3.5 | 0.004 | 0.69 | 0.0 | 0.04 | 16.41 | 0.00 | 2.052 | 13.48 | 0.54 | 6.0 | 93.9 | 0.1 | -0.50 | 2.02 | 0.85 | 0.85 | 1.54 | 65776 | 5509 | 32 | 952 | 147 | 0 | 0 | logfile |
✘ | 6QoZ | 4610 | 2023-11-17 | 2019-02-13 | 3.4 | 3.65 | 3.13 | 3.5 | 0.011 | 1.46 | 4.0 | 0.09 | 15.40 | 0.01 | 1.243 | 4.20 | 5.13 | 6.0 | 93.1 | 0.9 | -3.28 | 0.40 | 0.62 | 0.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17987 | 2307 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QS6 | 4624 | 2023-11-20 | 2019-02-20 | 3.9 | 4.03 | 2.44 | 4.0 | 0.011 | 1.09 | 0.0 | 0.06 | 10.53 | 0.01 | 2.187 | 6.85 | 0.07 | 8.2 | 91.8 | 0.0 | -4.07 | 0.57 | 0.46 | 0.09 | 3.9 | 0.003 | 0.80 | 0.0 | 0.05 | 16.46 | 0.00 | 1.964 | 18.64 | 0.47 | 5.7 | 94.3 | 0.0 | -0.45 | 1.40 | 0.74 | 0.77 | 0.63 | 28557 | 3568 | 13 | 0 | 35 | 0 | 0 | logfile |
✔ | 7EGC | 31112 | 2023-11-14 | 2021-03-24 | 3.9 | 3.72 | — | 4.9 | 0.008 | 1.13 | 76.0 | 0.08 | 15.43 | 0.01 | 1.402 | 24.31 | 3.39 | 7.3 | 91.9 | 0.8 | -3.59 | 0.43 | 0.10 | 0.10 | 3.1 | 0.008 | 0.96 | 3.0 | 0.05 | 16.79 | 0.01 | 1.880 | 20.83 | 0.49 | 7.3 | 92.4 | 0.3 | -0.99 | 1.29 | 0.53 | 0.34 | 0.60 | 113129 | 13879 | 63 | 142 | 18 | 0 | 0 | logfile |
✔ | 7RTV | 24690 | 2023-11-13 | 2021-08-15 | 3.96 | 4.06 | — | 4.1 | 0.004 | 0.76 | 0.0 | 0.05 | 14.21 | 0.00 | 2.207 | 14.04 | 0.32 | 2.8 | 97.2 | 0.0 | 3.61 | 0.41 | 0.63 | 0.10 | 4.1 | 0.004 | 0.91 | 0.0 | 0.04 | 16.58 | 0.00 | 2.168 | 18.02 | 0.32 | 3.3 | 96.7 | 0.0 | 2.73 | 1.76 | 0.41 | 0.64 | 0.28 | 2881 | 366 | 3 | 0 | 6 | 0 | 0 | logfile |
✔ | 5ZYA | 6915 | 2023-11-16 | 2018-05-23 | 3.95 | 4.18 | — | 4.1 | 0.009 | 1.35 | 0.0 | 0.16 | 12.77 | 0.01 | 1.673 | 8.53 | 0.32 | 9.6 | 90.4 | 0.0 | -4.57 | 0.67 | 0.52 | 0.10 | 4.0 | 0.004 | 0.91 | 0.0 | 0.06 | 16.17 | 0.00 | 2.043 | 16.94 | 0.49 | 6.5 | 93.5 | 0.0 | -1.95 | 1.81 | 0.77 | 0.72 | 1.08 | 16957 | 2143 | 7 | 0 | 5 | 0 | 0 | logfile |
✔ | 7WTD | 32779 | 2023-11-19 | 2022-02-04 | 3.9 | 5.03 | — | 4.3 | 0.023 | 1.20 | 1.0 | 0.05 | 15.55 | 0.01 | 0.990 | 21.59 | 1.15 | 7.3 | 92.6 | 0.1 | -0.88 | 0.81 | 0.61 | 0.10 | 4.4 | 0.004 | 0.94 | 1.0 | 0.05 | 16.56 | 0.01 | 2.083 | 25.45 | 0.42 | 8.2 | 91.8 | 0.1 | -1.39 | 4.65 | 0.85 | 0.72 | 0.20 | 27137 | 3491 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 7TAX | 25789 | 2023-11-19 | 2021-12-21 | 2.8 | 3.31 | — | 3.3 | 0.003 | 0.67 | 0.0 | 0.04 | 15.14 | 0.01 | 2.236 | 6.32 | 0.00 | 4.6 | 95.4 | 0.0 | -0.99 | 0.64 | 0.56 | 0.11 | 3.2 | 0.003 | 0.68 | 0.0 | 0.04 | 17.73 | 0.00 | 2.119 | 12.65 | 1.88 | 5.0 | 95.0 | 0.0 | -0.04 | 1.23 | 0.77 | 0.84 | 2.34 | 27855 | 3349 | 14 | 99 | 0 | 0 | 0 | logfile |
✔ | 6CXC | 7774 | 2023-11-16 | 2018-04-02 | 3.9 | 4.14 | — | 4.0 | 0.006 | 1.03 | 0.0 | 0.06 | 10.78 | 0.01 | 2.198 | 9.05 | 0.29 | 6.2 | 93.8 | 0.0 | -4.06 | 0.71 | 0.71 | 0.12 | 4.0 | 0.006 | 0.93 | 0.0 | 0.05 | 16.08 | 0.01 | 2.004 | 29.78 | 0.75 | 9.0 | 91.0 | 0.0 | -2.59 | 2.15 | 0.72 | 0.74 | 0.04 | 15196 | 1945 | 18 | 0 | 6 | 0 | 0 | logfile |
✔ | 7EGB | 31111 | 2023-11-14 | 2021-03-24 | 3.3 | 3.51 | — | 34.0 | 0.008 | 1.11 | 62.0 | 0.07 | 15.43 | 0.01 | 1.322 | 21.13 | 3.22 | 7.3 | 91.9 | 0.8 | -3.64 | 0.32 | 0.02 | 0.13 | 3.0 | 0.006 | 0.97 | 0.0 | 0.05 | 16.75 | 0.01 | 1.840 | 21.35 | 0.38 | 8.6 | 91.2 | 0.2 | -1.17 | 1.17 | 0.43 | 0.22 | 0.25 | 113098 | 13887 | 63 | 138 | 18 | 0 | 0 | logfile |
✘ | 7CQ7 | 30438 | 2023-11-16 | 2020-08-08 | 3.55 | 3.95 | — | 4.0 | 0.008 | 1.07 | 0.0 | 0.06 | 10.33 | 0.01 | 1.915 | 5.84 | 0.07 | 9.3 | 90.7 | 0.0 | -4.47 | 0.39 | 0.42 | 0.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13810 | 1766 | 8 | 0 | 9 | 0 | 0 | logfile |
✔ | 8ANE | 15540 | 2023-11-22 | 2022-08-05 | 3.2 | 2.95 | 3.14 | 3.2 | 0.003 | 0.64 | 0.0 | 0.04 | 15.69 | 0.01 | 2.198 | 3.35 | 0.93 | 4.6 | 95.4 | 0.0 | -1.93 | 0.55 | 0.43 | 0.13 | 3.1 | 0.004 | 0.71 | 0.0 | 0.04 | 17.72 | 0.01 | 1.775 | 11.73 | 0.49 | 5.9 | 94.1 | 0.0 | -1.40 | 2.66 | 0.66 | 0.64 | 1.04 | 36740 | 2212 | 8 | 66 | 0 | 0 | 18195 | logfile |
✔ | 7APK | 11857 | 2023-11-18 | 2020-10-17 | 3.3 | 3.26 | — | 3.5 | 0.004 | 0.81 | 0.0 | 0.05 | 8.50 | 0.01 | 2.256 | 4.07 | 0.10 | 4.7 | 95.2 | 0.1 | -2.73 | 0.41 | 0.22 | 0.13 | 2.9 | 0.007 | 0.80 | 0.0 | 0.04 | 13.05 | 0.00 | 2.079 | 13.91 | 0.12 | 6.6 | 93.3 | 0.1 | 0.97 | 1.14 | 0.50 | 0.44 | 0.92 | 72697 | 9893 | 30 | 0 | 74 | 0 | 0 | logfile |
✔ | 8D6X | 27225 | 2023-11-17 | 2022-06-06 | 3.2 | 10.22 | — | — | 0.003 | 0.62 | 0.0 | 0.04 | 12.14 | 0.00 | 2.195 | 17.76 | 0.06 | 2.6 | 97.4 | 0.0 | 1.17 | 0.70 | 0.42 | 0.14 | — | 0.003 | 0.68 | 0.0 | 0.04 | 14.52 | 0.00 | 2.006 | 31.08 | 0.17 | 4.9 | 95.1 | 0.0 | 0.20 | 4.65 | 0.78 | 0.54 | 0.09 | 68362 | 8957 | 41 | 0 | 0 | 0 | 0 | logfile |
✔ | 8FN6 | 29306 | 2023-11-18 | 2022-12-27 | 3.7 | 3.97 | 3.74 | 4.0 | 0.003 | 0.65 | 0.0 | 0.04 | 17.05 | 0.00 | 2.196 | 11.03 | 0.60 | 6.0 | 93.9 | 0.0 | -0.22 | 0.75 | 0.75 | 0.14 | 3.9 | 0.003 | 0.62 | 0.0 | 0.04 | 17.29 | 0.00 | 2.141 | 10.24 | 0.21 | 5.8 | 94.2 | 0.0 | 0.07 | 0.39 | 0.76 | 0.76 | 0.29 | 22421 | 2729 | 8 | 46 | 1 | 0 | 0 | logfile |
✔ | 7ZPJ | 14855 | 2023-11-18 | 2022-04-27 | 3.81 | 3.24 | 3.86 | 6.5 | 0.004 | 0.86 | 0.0 | 0.05 | 13.19 | 0.01 | 2.159 | 2.94 | 0.67 | 3.3 | 96.7 | 0.0 | 0.22 | 0.54 | 0.33 | 0.15 | 2.2 | 0.003 | 0.68 | 0.0 | 0.04 | 15.41 | 0.01 | 1.919 | 13.12 | 0.67 | 4.4 | 95.6 | 0.0 | -0.01 | 1.51 | 0.64 | 0.57 | 0.25 | 23479 | 1355 | 3 | 55 | 0 | 0 | 11508 | logfile |
✔ | 7RTU | 24689 | 2023-11-13 | 2021-08-15 | 3.89 | 4.06 | — | 4.1 | 0.003 | 0.61 | 0.0 | 0.04 | 14.31 | 0.00 | 2.175 | 7.11 | 0.16 | 3.1 | 96.9 | 0.0 | 4.32 | 0.55 | 0.69 | 0.15 | 4.1 | 0.003 | 0.56 | 0.0 | 0.04 | 16.58 | 0.00 | 2.211 | 7.03 | 0.31 | 2.4 | 97.6 | 0.0 | 4.14 | 0.30 | 0.62 | 0.73 | 0.38 | 5962 | 754 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 5X59 | 6704 | 2023-11-19 | 2017-02-15 | 3.7 | 3.77 | — | 3.7 | 0.011 | 1.66 | 0.0 | 0.08 | 14.57 | 0.01 | 1.477 | 23.24 | 4.97 | 13.2 | 85.4 | 1.3 | -3.87 | 0.48 | 0.41 | 0.15 | 3.7 | 0.005 | 1.02 | 0.0 | 0.05 | 15.80 | 0.01 | 1.921 | 22.27 | 0.65 | 13.4 | 86.4 | 0.2 | -2.42 | 1.59 | 0.60 | 0.65 | 1.20 | 26838 | 3423 | 6 | 0 | 30 | 0 | 0 | logfile |
✔ | 6H5i | 0140 | 2023-11-13 | 2018-07-24 | 3.9 | 3.87 | — | 23.0 | 0.006 | 0.81 | 0.0 | 0.05 | 10.47 | 0.01 | 2.196 | 2.64 | 0.17 | 4.3 | 95.7 | 0.0 | -1.74 | 0.29 | 0.06 | 0.15 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 15.36 | 0.00 | 2.097 | 14.22 | 0.32 | 4.1 | 95.9 | 0.0 | 1.46 | 1.26 | 0.37 | 0.24 | 0.27 | 43900 | 5392 | 26 | 0 | 0 | 0 | 0 | logfile |
✔ | 4V91 | 2599 | 2023-11-17 | 2014-03-21 | 3.7 | 3.84 | — | 3.8 | 0.133 | 4.77 | 525.0 | 0.43 | 20.66 | 0.07 | 0.695 | 17.94 | 12.79 | 14.1 | 78.2 | 7.8 | -5.39 | 0.33 | 0.36 | 0.15 | 3.8 | 0.033 | 1.32 | 0.0 | 0.04 | 17.36 | 0.02 | 2.043 | 15.54 | 0.99 | 8.6 | 90.8 | 0.7 | -2.81 | 2.06 | 0.63 | 0.82 | 1.35 | 125665 | 6450 | 45 | 3482 | 0 | 0 | 0 | logfile |