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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5AJ3 | 2913 | 2023-02-25 | 2015-02-20 | 3.6 | 3.73 | — | 3.7 | 0.018 | 1.28 | 0.0 | 0.05 | 18.85 | 0.07 | 1.844 | 24.00 | 10.71 | 3.9 | 96.0 | 0.1 | -3.65 | 0.86 | 0.86 | 2.03 | 3.6 | 0.004 | 1.41 | 0.0 | 0.04 | 19.14 | 0.02 | 1.819 | 16.05 | 0.59 | 4.7 | 95.3 | 0.0 | 0.16 | 1.64 | 0.84 | 0.82 | 1.63 | 66363 | 4665 | 44 | 1102 | 1006 | 118 | 0 | logfile |
✘ | 5BK4 | 9400 | 2023-02-23 | 2017-09-12 | 3.9 | 4.14 | — | 4.1 | 0.008 | 1.23 | 0.0 | 0.06 | 14.44 | 0.01 | 2.234 | 5.12 | 1.24 | 12.2 | 87.6 | 0.2 | -4.81 | 0.81 | 0.79 | 2.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62482 | 7636 | 22 | 120 | 8 | 0 | 0 | logfile |
✔ | 5BKF | 9403 | 2023-02-20 | 2021-03-19 | 3.6 | 3.87 | — | 4.0 | 0.004 | 0.53 | 0.0 | 0.04 | 13.49 | 0.00 | 2.015 | 7.14 | 0.35 | 6.2 | 93.8 | 0.0 | -3.64 | 0.66 | 0.81 | 2.57 | 3.9 | 0.003 | 0.69 | 0.0 | 0.04 | 16.08 | 0.00 | 2.207 | 11.83 | 0.48 | 3.2 | 96.8 | 0.0 | -0.23 | 1.32 | 0.67 | 0.83 | 2.35 | 13470 | 1694 | 10 | 0 | 9 | 0 | 0 | logfile |
✔ | 5BKG | 9404 | 2023-02-20 | 2021-03-19 | 3.8 | 3.93 | — | 4.0 | 0.004 | 0.57 | 0.0 | 0.04 | 12.49 | 0.00 | 2.044 | 8.32 | 0.21 | 6.2 | 93.8 | 0.0 | -3.60 | 0.68 | 0.82 | 2.85 | 4.0 | 0.003 | 0.70 | 0.0 | 0.04 | 15.92 | 0.00 | 2.209 | 12.01 | 0.55 | 3.6 | 96.4 | 0.0 | -0.48 | 0.65 | 0.70 | 0.85 | 2.01 | 13509 | 1689 | 10 | 0 | 9 | 0 | 0 | logfile |
✔ | 5BKi | 9405 | 2023-02-22 | 2021-03-19 | 3.1 | 3.21 | — | 3.2 | 0.010 | 1.04 | 0.0 | 0.06 | 15.27 | 0.01 | 2.252 | 4.46 | 0.44 | 5.4 | 94.6 | 0.0 | -5.10 | 0.70 | 0.85 | 3.65 | 3.2 | 0.002 | 0.53 | 0.0 | 0.05 | 16.01 | 0.00 | 2.138 | 5.90 | 0.05 | 3.6 | 96.4 | 0.0 | 0.05 | 1.61 | 0.65 | 0.85 | 2.70 | 16933 | 2156 | 20 | 0 | 21 | 4 | 0 | logfile |
✔ | 5BKJ | 9406 | 2023-02-22 | 2021-03-19 | 3.5 | 3.68 | — | 3.7 | 0.006 | 0.81 | 0.0 | 0.06 | 14.99 | 0.00 | 2.251 | 4.94 | 1.09 | 4.1 | 95.9 | 0.0 | -3.93 | 0.69 | 0.84 | 2.13 | 3.7 | 0.002 | 0.52 | 0.0 | 0.05 | 16.34 | 0.00 | 2.242 | 7.50 | 0.33 | 2.0 | 98.0 | 0.0 | 0.25 | 1.63 | 0.69 | 0.83 | 1.97 | 16939 | 2156 | 16 | 0 | 7 | 4 | 0 | logfile |
✔ | 5BKK | 9407 | 2023-02-22 | 2021-03-19 | 3.5 | 3.17 | — | 3.5 | 0.004 | 0.72 | 0.0 | 0.05 | 14.72 | 0.00 | 2.242 | 5.33 | 0.11 | 3.5 | 96.5 | 0.0 | -4.88 | 0.68 | 0.82 | 2.52 | 3.5 | 0.003 | 0.56 | 0.0 | 0.05 | 16.37 | 0.00 | 2.142 | 8.29 | 0.33 | 2.9 | 97.1 | 0.0 | -0.82 | 1.21 | 0.65 | 0.82 | 2.02 | 16831 | 2156 | 11 | 0 | 6 | 0 | 0 | logfile |
✔ | 5FLU | 3222 | 2023-02-21 | 2015-10-28 | 3.8 | 3.50 | — | 3.4 | 0.009 | 0.93 | 0.0 | 0.05 | 12.31 | 0.01 | 2.213 | 3.04 | 0.00 | 8.7 | 90.1 | 1.2 | -2.36 | 0.72 | 0.64 | 0.95 | 3.2 | 0.003 | 0.70 | 0.0 | 0.04 | 15.70 | 0.00 | 2.142 | 12.31 | 0.37 | 4.7 | 95.3 | 0.0 | -0.10 | 1.37 | 0.77 | 0.78 | 1.99 | 15132 | 2119 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 5FN1 | 3236 | 2023-02-23 | 2015-11-10 | 3.9 | 4.00 | — | 4.7 | 0.009 | 1.18 | 0.0 | 0.07 | 11.47 | 0.00 | 0.877 | 53.81 | 0.00 | 8.8 | 88.4 | 2.8 | -3.37 | 0.24 | 0.29 | 0.57 | 3.9 | 0.005 | 0.87 | 0.0 | 0.04 | 16.79 | 0.01 | 1.856 | 24.08 | 1.08 | 13.3 | 85.7 | 1.0 | -1.33 | 2.15 | 0.41 | 0.75 | 0.99 | 61308 | 3906 | 36 | 90 | 0 | 0 | 30078 | logfile |
✔ | 5FN2 | 3237 | 2023-02-19 | 2015-11-10 | 4.2 | 4.23 | — | 4.2 | 0.009 | 1.73 | 23.0 | 0.10 | 17.98 | 0.01 | 1.890 | 19.04 | 11.69 | 11.9 | 84.1 | 3.9 | -1.77 | 0.48 | 0.55 | — | 4.2 | 0.004 | 0.94 | 0.0 | 0.05 | 14.08 | 0.01 | 2.058 | 23.36 | 0.00 | 9.2 | 90.0 | 0.8 | -1.00 | 1.13 | 0.59 | 0.72 | — | 10276 | 1309 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5FN3 | 3238 | 2023-02-19 | 2015-11-10 | 4.1 | 4.53 | — | 4.1 | 0.011 | 1.81 | 26.0 | 0.10 | 18.64 | 0.01 | 1.021 | 20.42 | 11.34 | 10.7 | 85.3 | 4.0 | -1.54 | 0.66 | 0.60 | — | 4.1 | 0.004 | 0.86 | 0.0 | 0.04 | 13.92 | 0.01 | 2.083 | 20.37 | 0.00 | 9.0 | 90.1 | 0.8 | -0.82 | 2.23 | 0.71 | 0.79 | — | 10291 | 1318 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 5FN4 | 3239 | 2023-02-19 | 2015-11-10 | 4.0 | 4.24 | — | 4.2 | 0.010 | 1.71 | 17.0 | 0.10 | 18.07 | 0.01 | 2.131 | 10.17 | 10.51 | 12.0 | 84.8 | 3.2 | -1.44 | 0.61 | 0.55 | — | 4.1 | 0.004 | 0.89 | 0.0 | 0.05 | 17.23 | 0.01 | 2.157 | 20.43 | 0.57 | 7.4 | 91.9 | 0.6 | -0.37 | 1.73 | 0.69 | 0.79 | — | 9776 | 1250 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 5FN5 | 3240 | 2023-02-19 | 2015-11-10 | 4.3 | 4.62 | — | 4.3 | 0.012 | 1.85 | 28.0 | 0.11 | 18.82 | 0.01 | 2.074 | 13.59 | 14.00 | 11.4 | 84.3 | 4.3 | -1.91 | 0.65 | 0.62 | — | 4.3 | 0.004 | 0.88 | 0.0 | 0.04 | 13.59 | 0.01 | 2.139 | 24.44 | 0.00 | 9.1 | 90.1 | 0.8 | -1.13 | 1.03 | 0.70 | 0.79 | — | 9645 | 1227 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5FNA | 3241 | 2023-02-17 | 2015-11-11 | 4.8 | 4.43 | — | 4.2 | 0.013 | 1.51 | 0.0 | 0.08 | 12.32 | 0.01 | 2.219 | 36.54 | 0.00 | 6.0 | 94.0 | 0.0 | -1.83 | 0.48 | 0.71 | — | 4.2 | 0.003 | 0.98 | 0.0 | 0.05 | 13.75 | 0.00 | 2.308 | 15.29 | 0.00 | 9.6 | 90.4 | 0.0 | 0.65 | 2.49 | 0.49 | 0.77 | — | 5328 | 680 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 5FUU | 3308 | 2023-02-23 | 2016-01-29 | 4.19 | 4.30 | — | 4.2 | 0.013 | 1.78 | 3.0 | 0.11 | 10.98 | 0.02 | 1.862 | 17.37 | 1.20 | 6.2 | 92.2 | 1.7 | -2.38 | 0.69 | 0.72 | — | 4.2 | 0.003 | 0.80 | 0.0 | 0.05 | 12.32 | 0.00 | 2.131 | 13.32 | 0.10 | 6.5 | 93.0 | 0.5 | -1.32 | 0.96 | 0.77 | 0.83 | — | 20735 | 2281 | 70 | 0 | 213 | 0 | 0 | logfile |
✔ | 5FWK | 3337 | 2023-02-25 | 2016-02-17 | 3.9 | 3.97 | — | 3.9 | 0.016 | 1.31 | 0.0 | 0.07 | 9.60 | 0.01 | 1.173 | 2.17 | 0.00 | 4.0 | 95.5 | 0.5 | -0.44 | 0.77 | 0.77 | 1.55 | 3.9 | 0.003 | 0.62 | 0.0 | 0.04 | 14.82 | 0.00 | 1.821 | 11.16 | 0.28 | 5.7 | 94.3 | 0.0 | -0.14 | 1.24 | 0.77 | 0.77 | 1.68 | 26221 | 1612 | 6 | 0 | 4 | 0 | 13109 | logfile |
✔ | 5G04 | 3385 | 2023-02-24 | 2016-03-16 | 3.9 | 3.86 | — | 3.8 | 0.019 | 1.88 | 181.0 | 0.13 | 19.17 | 0.01 | 1.629 | 17.64 | 13.63 | 6.3 | 91.5 | 2.2 | -2.36 | 0.78 | 0.65 | 0.91 | 3.8 | 0.007 | 0.89 | 0.0 | 0.04 | 18.04 | 0.00 | 2.027 | 17.51 | 0.51 | 5.6 | 93.8 | 0.6 | 0.15 | 1.73 | 0.83 | 0.76 | 0.66 | 65481 | 8322 | 22 | 0 | 3 | 0 | 0 | logfile |
✔ | 5G05 | 3388 | 2023-02-24 | 2016-03-16 | 3.4 | 3.84 | — | 3.5 | 0.016 | 1.81 | 55.0 | 0.10 | 18.98 | 0.01 | 0.612 | 56.68 | 17.76 | 4.5 | 93.6 | 1.8 | -0.14 | 0.85 | 0.76 | 1.42 | 3.5 | 0.003 | 0.86 | 0.0 | 0.04 | 17.35 | 0.00 | 2.093 | 16.19 | 0.38 | 4.8 | 94.7 | 0.5 | 0.66 | 3.20 | 0.89 | 0.84 | 1.24 | 63181 | 8027 | 21 | 0 | 3 | 0 | 0 | logfile |
✔ | 5G06 | 3366 | 2023-02-25 | 2016-03-17 | 4.2 | 4.89 | — | 4.7 | 0.036 | 3.53 | 246.0 | 0.21 | 17.03 | 0.03 | 1.189 | 3.05 | 3.01 | 5.9 | 92.3 | 1.9 | -2.39 | 0.66 | 0.46 | — | 4.7 | 0.004 | 0.78 | 0.0 | 0.04 | 14.51 | 0.00 | 2.057 | 20.59 | 0.00 | 4.9 | 95.0 | 0.1 | -0.46 | 1.78 | 0.88 | 0.79 | — | 26794 | 3420 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 5G2X | 3331 | 2023-02-22 | 2016-04-16 | 3.8 | 3.49 | — | 3.4 | 0.001 | 0.31 | 0.0 | 0.02 | 11.56 | 0.00 | 2.219 | 4.36 | 0.45 | 19.7 | 74.4 | 5.9 | -5.72 | 0.51 | 0.30 | -0.09 | 3.3 | 0.004 | 0.76 | 0.0 | 0.03 | 18.97 | 0.00 | 2.000 | 29.45 | 0.91 | 18.5 | 80.5 | 1.1 | -5.04 | 2.32 | 0.80 | 0.65 | 0.86 | 19072 | 487 | 3 | 704 | 0 | 0 | 0 | logfile |