Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7W88	32353	2023-02-18	2021-12-07	3.5	3.65	—	3.6	0.003	0.71	0.0	0.04	16.87	0.00	2.225	15.22	8.23	15.2	84.8	0.0	-5.15	0.70	0.69	1.82	3.6	0.003	0.75	0.0	0.04	17.22	0.00	2.213	16.06	0.64	15.3	84.7	0.0	-3.13	0.94	0.70	0.69	1.73	7138	896	1	0	0	0	0	logfile
✔	7ZC4	14619	2023-02-21	2022-03-25	3.24	2.31	3.25	3.4	0.003	0.66	0.0	0.04	15.19	0.00	2.152	12.98	0.00	3.6	96.4	0.0	2.81	0.64	0.60	1.74	3.4	0.003	0.62	0.0	0.04	16.37	0.00	2.180	12.08	0.13	2.5	97.5	0.0	2.62	1.16	0.68	0.64	1.74	7272	926	1	0	0	0	0	logfile
✘	7K10	22619	2023-02-19	2020-09-06	3.3	3.44	—	3.4	0.006	0.98	0.0	0.05	15.43	0.01	2.300	4.19	0.37	10.6	89.3	0.1	-5.28	0.72	0.77	2.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10037	1259	1	0	0	0	0	logfile
✔	7KPW	22990	2023-02-17	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.9	0.003	0.73	0.0	0.04	5.85	0.00	2.148	2.79	0.00	11.5	87.9	0.6	-0.50	2.04	0.82	0.82	—	4313	865	1	0	0	0	0	logfile
✔	6V6C	21068	2023-02-17	2019-12-04	4.5	4.50	—	4.4	0.003	0.55	0.0	0.04	13.78	0.00	2.226	7.10	0.00	5.1	94.9	0.0	-4.56	0.42	0.82	—	4.4	0.003	0.67	0.0	0.04	14.26	0.00	2.222	6.48	0.23	4.7	95.3	0.0	-0.11	2.03	0.42	0.81	—	4007	497	1	0	0	0	0	logfile
✔	7SYF	25524	2023-02-20	2021-11-24	4.2	3.03	3.92	2.2	0.013	1.86	8.0	0.10	14.32	0.01	2.460	1.62	1.31	3.9	96.1	0.0	-1.56	0.67	0.61	—	2.2	0.003	0.78	0.0	0.04	13.94	0.00	1.993	16.84	0.08	3.1	96.9	0.0	0.80	1.17	0.68	0.63	—	11108	1391	1	0	0	0	0	logfile
✔	7AWA	11928	2023-02-17	2020-11-06	3.5	3.83	—	3.6	0.003	0.64	0.0	0.04	14.22	0.00	2.126	6.77	0.00	5.8	94.2	0.0	-2.52	0.57	0.81	2.14	3.7	0.002	0.52	0.0	0.04	15.06	0.00	2.163	6.96	0.00	3.7	96.3	0.0	-0.59	1.17	0.54	0.80	1.51	5310	328	1	0	0	0	2703	logfile
✔	8A06	15051	2023-02-16	2022-05-26	4.0	3.63	3.78	3.8	0.003	0.56	0.0	0.05	13.75	0.00	2.201	6.79	0.73	2.8	97.2	0.0	-0.86	0.27	0.78	—	3.7	0.004	0.65	0.0	0.05	17.25	0.00	2.290	6.79	0.00	4.8	95.2	0.0	-1.23	0.40	0.27	0.80	—	1185	147	1	0	0	0	0	logfile
✔	6XoW	22282	2023-02-18	2020-07-07	4.6	8.17	4.40	7.0	0.006	1.00	0.0	0.05	13.39	0.01	1.991	24.14	0.23	4.2	95.8	0.0	-0.98	0.87	0.72	—	7.0	0.004	0.75	0.0	0.04	13.43	0.01	2.136	25.99	0.23	4.7	95.3	0.0	0.02	0.83	0.92	0.82	—	7711	966	1	0	0	0	0	logfile
✔	7R9o	24330	2023-02-18	2021-06-29	4.0	4.66	—	4.0	0.002	0.38	0.0	0.04	4.49	0.00	2.252	2.85	0.25	10.5	88.7	0.8	-4.93	0.83	0.71	—	4.0	0.003	0.60	0.0	0.04	11.04	0.00	1.937	11.65	0.00	4.2	95.8	0.0	-0.51	3.45	0.88	0.83	—	7726	505	1	0	0	0	3938	logfile
✔	7XSM	33427	2023-02-20	2022-05-14	4.01	4.70	4.03	4.0	0.002	0.47	0.0	0.03	15.76	0.00	1.969	7.06	0.00	0.0	0.0	0.0	—	0.90	0.75	—	4.0	0.007	0.76	0.0	0.04	19.93	0.01	1.773	49.65	0.00	0.0	0.0	0.0	—	1.70	0.92	0.82	—	12464	0	1	388	0	0	4165	logfile
✔	7W84	32351	2023-02-21	2021-12-07	3.4	2.66	—	3.4	0.004	0.74	1.0	0.05	16.68	0.00	1.982	18.13	7.85	12.9	87.0	0.1	-3.60	0.79	0.78	1.21	3.5	0.004	0.88	0.0	0.05	17.57	0.00	2.037	21.31	1.17	12.3	87.7	0.0	-2.02	0.86	0.80	0.79	1.37	7879	995	1	0	0	0	0	logfile
✔	7o6B	12737	2023-02-21	2021-04-09	3.88	4.21	4.15	3.8	0.003	0.67	0.0	0.04	11.54	0.01	2.128	6.00	0.38	4.3	95.7	0.0	-0.87	0.75	0.67	0.37	3.8	0.002	0.56	0.0	0.04	14.10	0.00	2.026	9.46	0.13	3.6	96.4	0.0	0.66	1.15	0.76	0.69	0.37	14200	879	1	0	0	0	7040	logfile
✔	5LY6	4118	2023-02-17	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.62	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.004	0.81	0.0	0.04	14.05	0.00	2.184	19.06	0.00	10.7	88.9	0.4	-2.62	2.58	0.40	0.76	—	3725	471	1	0	0	0	0	logfile
✔	6LR0	31583	2023-02-19	2020-01-15	3.5	3.87	—	3.8	0.011	1.38	0.0	0.07	13.07	0.01	2.291	5.77	0.88	11.0	88.9	0.1	-6.35	0.66	0.78	1.71	3.8	0.003	0.76	0.0	0.04	15.43	0.00	2.162	9.47	0.39	6.5	93.5	0.0	-3.41	0.84	0.64	0.75	0.73	9576	1230	1	0	0	0	0	logfile
✔	7XSN	33428	2023-02-18	2022-05-14	3.01	4.02	3.04	3.2	0.013	1.06	0.0	0.05	16.67	0.01	2.252	5.79	0.00	0.0	0.0	0.0	—	0.91	0.84	—	3.2	0.006	0.61	0.0	0.03	16.36	0.00	2.111	20.82	0.00	0.0	0.0	0.0	—	0.30	0.92	0.87	—	8279	0	1	387	0	0	0	logfile
✔	7K1V	22630	2023-02-17	2020-09-08	4.6	4.95	—	4.8	0.008	1.12	0.0	0.06	15.77	0.01	2.159	13.77	0.40	11.0	89.0	0.0	-4.04	0.71	0.71	—	4.8	0.003	0.72	0.0	0.04	13.84	0.00	2.160	21.48	0.00	7.3	92.7	0.0	-1.21	2.35	0.70	0.75	—	4971	626	1	0	0	0	0	logfile
✔	7N98	24252	2023-02-17	2021-06-17	3.5	3.78	3.89	4.0	0.004	0.72	0.0	0.05	13.69	0.01	2.217	11.62	0.27	8.5	91.5	0.0	-1.56	0.51	0.82	3.02	4.0	0.003	0.68	0.0	0.04	16.81	0.01	2.245	8.30	1.07	7.6	92.4	0.0	0.09	0.51	0.50	0.81	1.11	3625	473	1	0	0	0	0	logfile
✔	7M68	23690	2023-02-24	2021-03-25	4.04	4.54	4.34	4.5	0.005	0.75	0.0	0.04	13.49	0.00	2.358	1.05	0.60	5.8	94.2	0.0	-0.08	0.51	0.70	—	4.5	0.003	0.57	0.0	0.04	13.42	0.00	2.019	10.49	0.00	7.4	92.6	0.0	-0.76	1.42	0.52	0.73	—	21806	1390	1	0	0	0	10919	logfile
✔	7ZFW	14704	2023-02-20	2022-04-01	3.8	4.62	3.46	3.0	0.006	0.83	0.0	0.05	17.92	0.03	2.266	2.77	0.00	0.0	0.0	0.0	—	0.32	0.81	—	3.0	0.009	0.90	0.0	0.04	20.26	0.01	1.952	38.01	0.00	0.0	0.0	0.0	—	2.55	0.33	0.85	—	13188	0	1	615	0	0	0	logfile

• ← previous
• Page 4 of 353
• next →