The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8EX6 | 28652 | 2023-07-03 | 2022-10-24 | 3.54 | 3.80 | 3.48 | 3.8 | 0.005 | 0.62 | 0.0 | 0.04 | 12.64 | 0.00 | 2.088 | 5.04 | 0.00 | 2.2 | 97.8 | 0.0 | 2.72 | 0.62 | 0.83 | 3.04 | 3.8 | 0.003 | 0.58 | 0.0 | 0.04 | 14.20 | 0.00 | 2.121 | 5.19 | 0.30 | 2.0 | 98.0 | 0.0 | 2.77 | 0.73 | 0.61 | 0.82 | 2.30 | 3222 | 416 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 8F7J | 28905 | 2023-07-03 | 2022-11-18 | 4.32 | 4.45 | 4.63 | 8.9 | 0.005 | 0.92 | 0.0 | 0.05 | 15.44 | 0.01 | 2.282 | 15.12 | 0.26 | 5.7 | 94.3 | 0.0 | -3.18 | 0.38 | 0.32 | — | 4.3 | 0.004 | 0.80 | 0.0 | 0.04 | 13.92 | 0.01 | 2.122 | 24.96 | 0.00 | 9.4 | 90.6 | 0.0 | -3.21 | 2.94 | 0.44 | 0.45 | — | 3321 | 407 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8i4B | 35168 | 2023-07-05 | 2023-01-19 | 3.13 | 3.35 | 3.17 | 3.4 | 0.017 | 1.07 | 0.0 | 0.06 | 14.07 | 0.01 | 2.161 | 11.06 | 0.00 | 6.0 | 94.0 | 0.0 | -2.17 | 0.60 | 0.75 | 2.25 | 3.4 | 0.003 | 0.55 | 0.0 | 0.04 | 15.66 | 0.00 | 2.186 | 6.14 | 0.09 | 1.7 | 98.3 | 0.0 | 1.60 | 2.37 | 0.58 | 0.80 | 1.65 | 9727 | 1218 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YJ5 | 10816 | 2023-07-03 | 2020-04-02 | 3.5 | 2.92 | 3.56 | 3.3 | 0.007 | 0.87 | 0.0 | 0.05 | 13.19 | 0.01 | 2.183 | 4.22 | 0.00 | 12.5 | 87.5 | 0.0 | -5.13 | 0.42 | 0.62 | 3.01 | 3.3 | 0.007 | 0.81 | 0.0 | 0.05 | 15.31 | 0.01 | 2.257 | 11.88 | 0.61 | 12.2 | 87.8 | 0.0 | -2.14 | 0.81 | 0.52 | 0.74 | 3.59 | 2061 | 306 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YZ4 | 14387 | 2023-07-09 | 2022-02-18 | 3.84 | 3.32 | 4.13 | 3.2 | 0.004 | 0.78 | 0.0 | 0.05 | 11.95 | 0.01 | 2.253 | 1.46 | 0.92 | 3.6 | 96.4 | 0.0 | -2.13 | 0.65 | 0.63 | 1.40 | 3.1 | 0.003 | 0.59 | 0.0 | 0.04 | 14.32 | 0.00 | 1.985 | 7.22 | 0.28 | 3.6 | 96.4 | 0.0 | 0.61 | 1.23 | 0.66 | 0.63 | 0.97 | 19805 | 1234 | 1 | 0 | 0 | 0 | 9953 | logfile |
✔ | 6D3R | 7793 | 2023-07-04 | 2018-04-16 | 4.3 | 4.80 | 4.40 | 4.5 | 0.017 | 1.75 | 0.0 | 0.10 | 9.07 | 0.01 | 2.385 | 0.57 | 0.00 | 1.5 | 98.5 | 0.0 | 0.66 | 0.66 | 0.76 | — | 4.5 | 0.003 | 0.65 | 0.0 | 0.04 | 11.96 | 0.00 | 2.185 | 7.56 | 0.00 | 3.4 | 96.6 | 0.0 | 1.90 | 1.20 | 0.68 | 0.78 | — | 7610 | 1127 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6BHU | 7099 | 2023-07-05 | 2017-10-31 | 3.14 | 3.58 | 3.62 | 3.7 | 0.008 | 1.22 | 0.0 | 0.06 | 12.26 | 0.00 | 1.915 | 0.69 | 0.00 | 3.7 | 96.3 | 0.0 | -1.76 | 0.48 | 0.69 | 2.60 | 3.7 | 0.003 | 0.57 | 0.0 | 0.04 | 15.20 | 0.00 | 1.978 | 5.37 | 0.47 | 2.0 | 98.0 | 0.0 | 1.92 | 0.71 | 0.58 | 0.83 | 1.65 | 10273 | 1208 | 1 | 0 | 127 | 0 | 0 | logfile |
✔ | 7TPK | 26058 | 2023-07-03 | 2022-01-25 | 3.4 | 3.41 | — | 3.4 | 0.011 | 1.40 | 1.0 | 0.08 | 9.69 | 0.01 | 2.528 | 2.12 | 0.00 | 4.7 | 95.3 | 0.0 | -0.98 | 0.60 | 0.72 | 4.39 | 3.4 | 0.004 | 0.63 | 0.0 | 0.04 | 15.27 | 0.00 | 2.331 | 4.95 | 0.00 | 4.2 | 95.8 | 0.0 | -1.45 | 1.26 | 0.65 | 0.81 | 3.26 | 1484 | 194 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 8P6A | 17462 | 2023-07-03 | 2023-05-25 | 3.63 | 3.93 | 3.43 | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 17.40 | 0.00 | 2.161 | 10.48 | 0.29 | 2.4 | 97.6 | 0.0 | 2.80 | 0.57 | 0.81 | 1.41 | 3.9 | 0.003 | 0.65 | 0.0 | 0.04 | 17.37 | 0.00 | 2.146 | 11.22 | 0.00 | 3.1 | 96.9 | 0.0 | 2.99 | 0.85 | 0.57 | 0.81 | 1.29 | 3337 | 432 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7P05 | 13144 | 2023-07-10 | 2021-06-29 | 3.13 | 3.16 | — | 3.3 | 0.008 | 0.87 | 0.0 | 0.04 | 13.66 | 0.01 | 1.997 | 7.44 | 0.09 | 4.1 | 95.9 | 0.0 | 0.57 | 0.66 | 0.82 | 3.58 | 3.3 | 0.004 | 0.54 | 0.0 | 0.04 | 14.62 | 0.00 | 1.976 | 5.82 | 0.00 | 4.0 | 96.0 | 0.0 | 1.12 | 0.78 | 0.67 | 0.84 | 3.24 | 21576 | 1353 | 1 | 0 | 3 | 0 | 10675 | logfile |
✔ | 8E50 | 27899 | 2023-07-03 | 2022-08-19 | 3.67 | 3.33 | 3.68 | 3.7 | 0.040 | 2.29 | 0.0 | 0.09 | 16.12 | 0.00 | 1.603 | 5.17 | 0.00 | 4.4 | 95.6 | 0.0 | -4.32 | 0.50 | 0.67 | 2.44 | 3.6 | 0.005 | 0.65 | 0.0 | 0.04 | 18.04 | 0.00 | 2.132 | 10.89 | 0.17 | 3.3 | 96.7 | 0.0 | 0.56 | 1.67 | 0.66 | 0.84 | 2.18 | 5277 | 651 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7T3o | 25666 | 2023-07-03 | 2021-12-08 | 3.3 | 3.72 | — | 3.7 | 0.006 | 0.68 | 0.0 | 0.05 | 13.49 | 0.00 | 2.284 | 3.91 | 0.29 | 7.1 | 92.9 | 0.0 | -3.36 | 0.49 | 0.86 | 1.84 | 3.7 | 0.003 | 0.66 | 0.0 | 0.04 | 16.17 | 0.00 | 2.229 | 6.17 | 0.00 | 3.6 | 96.4 | 0.0 | 0.21 | 0.58 | 0.48 | 0.84 | 1.64 | 3410 | 452 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5W81 | 8782 | 2023-07-05 | 2017-06-21 | 3.37 | 3.79 | — | 3.9 | 0.008 | 1.26 | 1.0 | 0.06 | 13.30 | 0.00 | 1.940 | 1.47 | 0.00 | 5.1 | 94.9 | 0.0 | -3.11 | 0.45 | 0.60 | 0.57 | 3.8 | 0.003 | 0.72 | 0.0 | 0.04 | 16.92 | 0.00 | 1.899 | 8.26 | 0.20 | 3.2 | 96.7 | 0.1 | 0.14 | 1.56 | 0.57 | 0.81 | 1.38 | 9393 | 1173 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 8EiG | 28155 | 2023-07-05 | 2022-09-15 | 3.6 | 2.88 | 3.69 | 3.4 | 0.006 | 1.05 | 0.0 | 0.04 | 12.55 | 0.00 | 1.883 | 2.03 | 1.91 | 2.5 | 97.4 | 0.1 | -0.77 | 0.61 | 0.79 | 2.59 | 3.4 | 0.002 | 0.54 | 0.0 | 0.04 | 15.46 | 0.00 | 2.025 | 5.08 | 0.20 | 3.5 | 96.4 | 0.1 | 0.93 | 0.67 | 0.59 | 0.80 | 1.56 | 9249 | 1141 | 1 | 0 | 6 | 0 | 0 | logfile |
✔ | 7ZKB | 14761 | 2023-07-05 | 2022-04-12 | 4.7 | 4.80 | 4.47 | 4.7 | 0.013 | 1.10 | 2.0 | 0.06 | 14.01 | 0.00 | 2.224 | 16.22 | 0.21 | 6.9 | 93.1 | 0.0 | 0.07 | 0.56 | 0.74 | — | 4.7 | 0.003 | 0.71 | 0.0 | 0.04 | 14.48 | 0.00 | 2.134 | 14.95 | 0.00 | 6.4 | 93.6 | 0.0 | -0.02 | 0.55 | 0.56 | 0.76 | — | 9043 | 1158 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 6ZH2 | 11211 | 2023-07-13 | 2020-06-20 | 3.92 | 4.42 | 3.96 | 4.0 | 0.003 | 0.66 | 0.0 | 0.04 | 14.54 | 0.00 | 2.169 | 15.46 | 0.06 | 7.8 | 92.1 | 0.1 | -0.24 | 0.88 | 0.86 | 1.25 | 4.0 | 0.004 | 0.68 | 0.0 | 0.04 | 15.92 | 0.00 | 2.121 | 15.00 | 0.12 | 6.9 | 93.0 | 0.0 | 0.30 | 1.50 | 0.88 | 0.87 | 1.09 | 29313 | 3676 | 1 | 0 | 28 | 0 | 0 | logfile |
✔ | 7ZK4 | 14754 | 2023-07-05 | 2022-04-12 | 2.6 | 2.81 | 2.63 | 2.9 | 0.006 | 0.86 | 6.0 | 0.05 | 14.14 | 0.00 | 2.008 | 9.40 | 0.10 | 2.3 | 97.7 | 0.0 | 1.26 | 0.69 | 0.84 | 3.61 | 2.9 | 0.003 | 0.54 | 0.0 | 0.04 | 16.67 | 0.00 | 1.933 | 7.75 | 1.26 | 2.4 | 97.5 | 0.1 | 1.75 | 0.50 | 0.60 | 0.84 | 3.19 | 9337 | 1176 | 1 | 0 | 9 | 4 | 0 | logfile |
✔ | 8E4Y | 27898 | 2023-07-03 | 2022-08-19 | 3.4 | 3.42 | 3.37 | 3.5 | 0.016 | 1.86 | 0.0 | 0.09 | 15.22 | 0.01 | 2.412 | 0.75 | 0.00 | 3.8 | 96.2 | 0.0 | -2.41 | 0.56 | 0.75 | 2.88 | 3.5 | 0.003 | 0.50 | 0.0 | 0.04 | 16.51 | 0.00 | 2.204 | 4.03 | 0.00 | 2.5 | 97.5 | 0.0 | 1.32 | 1.32 | 0.69 | 0.88 | 2.47 | 5294 | 651 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 8i4C | 35169 | 2023-07-05 | 2023-01-19 | 3.08 | 3.30 | 3.15 | 3.4 | 0.007 | 0.81 | 0.0 | 0.14 | 14.14 | 0.01 | 2.195 | 15.02 | 1.13 | 3.1 | 96.9 | 0.0 | -0.96 | 0.50 | 0.66 | 1.17 | 3.3 | 0.003 | 0.60 | 0.0 | 0.04 | 15.65 | 0.00 | 2.199 | 9.31 | 0.19 | 1.5 | 98.5 | 0.0 | 0.93 | 1.40 | 0.57 | 0.82 | 1.69 | 9752 | 1218 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 8CV3 | 27007 | 2023-07-03 | 2022-05-17 | 3.04 | 2.73 | 2.97 | 3.0 | 0.003 | 0.51 | 0.0 | 0.04 | 14.07 | 0.00 | 2.310 | 2.76 | 0.00 | 2.9 | 97.1 | 0.0 | 1.93 | 0.52 | 0.84 | 2.06 | 3.1 | 0.003 | 0.51 | 0.0 | 0.04 | 14.79 | 0.00 | 2.202 | 4.75 | 0.58 | 2.0 | 98.0 | 0.0 | 2.66 | 0.90 | 0.48 | 0.84 | 2.17 | 3168 | 416 | 1 | 0 | 2 | 0 | 0 | logfile |