Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WYJ	21966	2022-04-04	2020-05-13	3.7	3.74	—	3.8	0.010	0.64	0.0	0.05	12.33	0.00	2.268	5.08	0.00	5.3	94.7	0.0	-4.80	0.59	0.78	4.37	3.8	0.004	0.61	0.0	0.04	14.39	0.00	2.257	5.25	0.96	1.5	98.5	0.0	1.66	0.59	0.64	0.80	1.50	2949	398	1	0	0	0	0	logfile
✔	6XMQ	22261	2022-04-04	2020-06-30	3.7	4.26	3.79	4.0	0.006	0.66	0.0	0.04	12.80	0.00	1.660	6.11	0.00	3.7	96.3	0.0	-1.63	0.72	0.85	1.50	4.0	0.002	0.55	0.0	0.04	14.84	0.00	2.024	6.53	0.11	2.5	97.5	0.0	0.89	1.28	0.72	0.85	1.27	8362	1085	1	0	2	0	0	logfile
✔	6YJ5	10816	2022-04-04	2020-04-02	3.5	2.92	3.56	3.3	0.007	0.87	0.0	0.05	13.19	0.01	2.183	4.22	0.00	12.5	87.5	0.0	-5.13	0.42	0.62	3.01	3.3	0.003	0.67	0.0	0.05	15.25	0.01	2.265	7.92	0.61	8.2	91.8	0.0	-1.96	0.81	0.51	0.72	2.81	2061	306	1	0	0	0	0	logfile
✔	7KVF	23049	2022-04-05	2020-11-28	3.6	4.39	3.76	3.6	0.005	0.82	2.0	0.05	14.67	0.00	2.204	17.14	0.57	18.2	81.4	0.4	-5.88	0.82	0.66	1.37	3.6	0.003	0.80	0.0	0.05	16.25	0.00	2.135	18.59	0.16	12.6	87.4	0.0	-3.82	2.40	0.87	0.76	0.76	11142	1374	1	0	0	0	0	logfile
✘	6LQA	0942	2022-04-04	2020-01-13	3.3	3.51	—	3.5	0.008	1.28	0.0	0.07	14.15	0.01	1.369	15.36	6.02	7.8	91.4	0.9	-4.09	0.56	0.77	2.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9387	1151	1	0	10	0	0	logfile
✔	7ADJ	11727	2022-04-04	2020-09-15	2.8	3.02	2.79	3.0	0.014	1.99	4.0	0.11	14.68	0.01	2.562	0.51	0.18	6.9	93.1	0.0	-2.18	0.34	0.70	3.50	3.0	0.003	0.71	0.0	0.04	17.21	0.00	2.143	6.39	2.39	6.5	93.5	0.0	-1.05	1.26	0.41	0.77	2.89	9710	613	1	0	0	0	4790	logfile
✔	7KPW	22990	2022-04-04	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.8	0.005	0.86	0.0	0.04	6.91	0.00	2.059	5.41	0.00	14.6	84.8	0.6	-1.66	2.04	0.83	0.83	—	4313	865	1	0	0	0	0	logfile
✔	6UY0	20945	2022-04-04	2019-11-09	3.23	3.39	—	3.4	0.014	1.85	0.0	0.08	13.82	0.00	1.861	1.22	0.00	4.3	95.7	0.0	-2.56	0.47	0.67	1.98	3.4	0.003	0.54	0.0	0.04	15.79	0.00	2.022	5.15	0.28	2.2	97.8	0.0	1.71	1.14	0.64	0.83	1.38	9684	1210	1	0	7	0	0	logfile
✔	6XLY	22252	2022-04-04	2020-06-29	3.1	4.00	3.11	3.5	0.006	0.95	0.0	0.05	15.47	0.01	2.336	4.00	0.97	4.3	95.7	0.0	-5.77	0.86	0.77	1.71	3.6	0.003	0.60	0.0	0.04	15.59	0.00	2.135	11.79	0.19	2.8	97.2	0.0	0.46	0.56	0.88	0.84	1.55	5111	646	1	0	1	0	0	logfile
✔	7K1V	22630	2022-04-04	2020-09-08	4.6	4.95	—	4.8	0.008	1.12	0.0	0.06	15.77	0.01	2.159	13.77	0.40	11.0	89.0	0.0	-4.04	0.71	0.71	—	4.8	0.003	0.71	0.0	0.04	14.11	0.01	2.178	18.70	0.00	5.2	94.8	0.0	-1.01	1.44	0.70	0.75	—	4971	626	1	0	0	0	0	logfile
✔	6X13	21987	2022-04-04	2020-05-18	3.66	3.77	—	3.8	0.007	1.04	1.0	0.05	16.27	0.01	2.340	4.80	0.31	6.5	93.5	0.0	-3.73	0.64	0.84	1.86	3.8	0.004	0.71	0.0	0.04	16.03	0.01	2.265	9.45	0.00	4.8	95.2	0.0	1.52	0.37	0.64	0.84	1.86	3136	417	1	0	1	0	0	logfile
✔	7KVE	23048	2022-04-05	2020-11-27	3.3	3.69	3.38	3.6	0.005	0.82	2.0	0.05	14.67	0.00	2.204	17.14	0.57	18.2	81.4	0.4	-5.88	0.75	0.73	2.61	3.6	0.003	0.72	0.0	0.05	16.45	0.00	2.136	12.72	0.16	14.4	85.6	0.0	-4.07	1.21	0.75	0.74	2.25	11142	1374	1	0	0	0	0	logfile
✔	7DCQ	30639	2022-04-04	2020-10-26	2.9	3.09	—	3.1	0.006	0.95	1.0	0.06	10.61	0.01	2.378	4.64	0.85	4.1	95.9	0.0	-3.49	0.70	0.81	4.02	3.1	0.004	0.68	0.0	0.05	15.67	0.01	2.325	8.43	2.39	4.1	95.9	0.0	0.79	0.63	0.70	0.83	2.88	5197	653	1	0	0	0	0	logfile
✔	6X2Z	22014	2022-04-04	2020-05-21	3.03	3.18	—	3.2	0.005	0.84	0.0	0.05	15.51	0.01	2.131	6.52	0.00	3.6	96.4	0.0	-5.65	0.44	0.86	2.63	3.2	0.003	0.68	0.0	0.04	16.16	0.01	2.184	10.16	0.28	3.1	96.9	0.0	0.65	0.95	0.45	0.87	2.16	3205	420	1	0	3	0	0	logfile
✔	7LCK	23276	2022-04-04	2021-01-11	3.24	3.84	3.15	3.6	0.007	1.42	4.0	0.24	15.83	0.01	2.160	7.64	1.16	6.7	93.3	0.0	-0.93	0.69	0.79	2.21	3.7	0.003	0.67	0.0	0.04	16.53	0.00	2.249	5.14	0.29	3.6	96.4	0.0	0.85	0.56	0.65	0.79	2.04	3258	390	1	0	1	11	0	logfile
✔	7JGG	22326	2022-04-04	2020-07-19	4.88	8.00	—	7.7	0.002	0.46	0.0	0.03	13.22	0.00	1.988	54.13	0.00	3.3	96.5	0.2	1.67	0.66	0.64	—	7.5	0.002	0.46	0.0	0.03	12.61	0.00	1.976	80.22	0.00	4.5	95.5	0.0	1.72	1.70	0.67	0.69	—	4210	506	1	0	0	0	28	logfile
✔	7LCJ	23275	2022-04-04	2021-01-11	2.82	3.02	2.78	3.1	0.010	1.51	3.0	0.24	15.14	0.01	2.216	8.57	1.16	3.9	96.1	0.0	0.54	0.46	0.80	2.75	3.1	0.004	0.60	0.0	0.04	17.06	0.00	2.254	4.99	1.16	1.8	98.2	0.0	1.29	1.69	0.49	0.82	3.04	3264	390	1	0	1	17	0	logfile
✔	7A8P	11679	2022-04-04	2020-08-30	3.5	3.61	3.44	3.6	0.004	0.52	0.0	0.03	16.07	0.00	2.165	2.80	0.63	2.2	97.8	0.0	0.97	0.73	0.78	1.97	3.6	0.008	1.04	0.0	0.04	17.11	0.01	2.072	9.21	0.25	2.0	98.0	0.0	2.25	0.46	0.74	0.80	1.99	7305	911	1	0	1	0	0	logfile
✔	7E7S	31003	2022-04-04	2021-02-27	3.3	3.32	3.27	3.4	0.003	0.50	0.0	0.04	14.41	0.00	2.166	8.26	0.00	2.6	97.4	0.0	-0.13	0.68	0.82	1.44	3.4	0.003	0.58	0.0	0.04	15.87	0.00	2.214	8.57	0.23	3.1	96.9	0.0	1.43	1.28	0.67	0.82	0.57	7884	1020	1	0	2	0	0	logfile
✔	7EZ0	31385	2022-04-04	2021-06-01	3.14	3.26	—	3.2	0.003	0.56	0.0	0.03	14.43	0.00	1.804	2.25	0.00	0.0	0.0	0.0	—	0.74	0.79	—	3.2	0.006	0.69	0.0	0.04	15.71	0.00	1.877	8.66	0.00	0.0	0.0	0.0	—	1.91	0.77	0.86	—	8306	0	1	387	27	0	0	logfile

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