Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EX6	28652	2023-07-03	2022-10-24	3.54	3.80	3.48	3.8	0.005	0.62	0.0	0.04	12.64	0.00	2.088	5.04	0.00	2.2	97.8	0.0	2.72	0.62	0.83	3.04	3.8	0.003	0.58	0.0	0.04	14.20	0.00	2.121	5.19	0.30	2.0	98.0	0.0	2.77	0.73	0.61	0.82	2.30	3222	416	1	0	1	0	0	logfile
✔	8F7J	28905	2023-07-03	2022-11-18	4.32	4.45	4.63	8.9	0.005	0.92	0.0	0.05	15.44	0.01	2.282	15.12	0.26	5.7	94.3	0.0	-3.18	0.38	0.32	—	4.3	0.004	0.80	0.0	0.04	13.92	0.01	2.122	24.96	0.00	9.4	90.6	0.0	-3.21	2.94	0.44	0.45	—	3321	407	1	0	0	0	0	logfile
✔	8i4B	35168	2023-07-05	2023-01-19	3.13	3.35	3.17	3.4	0.017	1.07	0.0	0.06	14.07	0.01	2.161	11.06	0.00	6.0	94.0	0.0	-2.17	0.60	0.75	2.25	3.4	0.003	0.55	0.0	0.04	15.66	0.00	2.186	6.14	0.09	1.7	98.3	0.0	1.60	2.37	0.58	0.80	1.65	9727	1218	1	0	0	0	0	logfile
✔	6YJ5	10816	2023-07-03	2020-04-02	3.5	2.92	3.56	3.3	0.007	0.87	0.0	0.05	13.19	0.01	2.183	4.22	0.00	12.5	87.5	0.0	-5.13	0.42	0.62	3.01	3.3	0.007	0.81	0.0	0.05	15.31	0.01	2.257	11.88	0.61	12.2	87.8	0.0	-2.14	0.81	0.52	0.74	3.59	2061	306	1	0	0	0	0	logfile
✔	7YZ4	14387	2023-07-09	2022-02-18	3.84	3.32	4.13	3.2	0.004	0.78	0.0	0.05	11.95	0.01	2.253	1.46	0.92	3.6	96.4	0.0	-2.13	0.65	0.63	1.40	3.1	0.003	0.59	0.0	0.04	14.32	0.00	1.985	7.22	0.28	3.6	96.4	0.0	0.61	1.23	0.66	0.63	0.97	19805	1234	1	0	0	0	9953	logfile
✔	6D3R	7793	2023-07-04	2018-04-16	4.3	4.80	4.40	4.5	0.017	1.75	0.0	0.10	9.07	0.01	2.385	0.57	0.00	1.5	98.5	0.0	0.66	0.66	0.76	—	4.5	0.003	0.65	0.0	0.04	11.96	0.00	2.185	7.56	0.00	3.4	96.6	0.0	1.90	1.20	0.68	0.78	—	7610	1127	1	0	2	0	0	logfile
✔	6BHU	7099	2023-07-05	2017-10-31	3.14	3.58	3.62	3.7	0.008	1.22	0.0	0.06	12.26	0.00	1.915	0.69	0.00	3.7	96.3	0.0	-1.76	0.48	0.69	2.60	3.7	0.003	0.57	0.0	0.04	15.20	0.00	1.978	5.37	0.47	2.0	98.0	0.0	1.92	0.71	0.58	0.83	1.65	10273	1208	1	0	127	0	0	logfile
✔	7TPK	26058	2023-07-03	2022-01-25	3.4	3.41	—	3.4	0.011	1.40	1.0	0.08	9.69	0.01	2.528	2.12	0.00	4.7	95.3	0.0	-0.98	0.60	0.72	4.39	3.4	0.004	0.63	0.0	0.04	15.27	0.00	2.331	4.95	0.00	4.2	95.8	0.0	-1.45	1.26	0.65	0.81	3.26	1484	194	1	0	1	0	0	logfile
✔	8P6A	17462	2023-07-03	2023-05-25	3.63	3.93	3.43	3.9	0.003	0.66	0.0	0.04	17.40	0.00	2.161	10.48	0.29	2.4	97.6	0.0	2.80	0.57	0.81	1.41	3.9	0.003	0.65	0.0	0.04	17.37	0.00	2.146	11.22	0.00	3.1	96.9	0.0	2.99	0.85	0.57	0.81	1.29	3337	432	1	0	0	0	0	logfile
✔	7P05	13144	2023-07-10	2021-06-29	3.13	3.16	—	3.3	0.008	0.87	0.0	0.04	13.66	0.01	1.997	7.44	0.09	4.1	95.9	0.0	0.57	0.66	0.82	3.58	3.3	0.004	0.54	0.0	0.04	14.62	0.00	1.976	5.82	0.00	4.0	96.0	0.0	1.12	0.78	0.67	0.84	3.24	21576	1353	1	0	3	0	10675	logfile
✔	8E50	27899	2023-07-03	2022-08-19	3.67	3.33	3.68	3.7	0.040	2.29	0.0	0.09	16.12	0.00	1.603	5.17	0.00	4.4	95.6	0.0	-4.32	0.50	0.67	2.44	3.6	0.005	0.65	0.0	0.04	18.04	0.00	2.132	10.89	0.17	3.3	96.7	0.0	0.56	1.67	0.66	0.84	2.18	5277	651	1	0	2	0	0	logfile
✔	7T3o	25666	2023-07-03	2021-12-08	3.3	3.72	—	3.7	0.006	0.68	0.0	0.05	13.49	0.00	2.284	3.91	0.29	7.1	92.9	0.0	-3.36	0.49	0.86	1.84	3.7	0.003	0.66	0.0	0.04	16.17	0.00	2.229	6.17	0.00	3.6	96.4	0.0	0.21	0.58	0.48	0.84	1.64	3410	452	1	0	0	0	0	logfile
✔	5W81	8782	2023-07-05	2017-06-21	3.37	3.79	—	3.9	0.008	1.26	1.0	0.06	13.30	0.00	1.940	1.47	0.00	5.1	94.9	0.0	-3.11	0.45	0.60	0.57	3.8	0.003	0.72	0.0	0.04	16.92	0.00	1.899	8.26	0.20	3.2	96.7	0.1	0.14	1.56	0.57	0.81	1.38	9393	1173	1	0	4	0	0	logfile
✔	8EiG	28155	2023-07-05	2022-09-15	3.6	2.88	3.69	3.4	0.006	1.05	0.0	0.04	12.55	0.00	1.883	2.03	1.91	2.5	97.4	0.1	-0.77	0.61	0.79	2.59	3.4	0.002	0.54	0.0	0.04	15.46	0.00	2.025	5.08	0.20	3.5	96.4	0.1	0.93	0.67	0.59	0.80	1.56	9249	1141	1	0	6	0	0	logfile
✔	7ZKB	14761	2023-07-05	2022-04-12	4.7	4.80	4.47	4.7	0.013	1.10	2.0	0.06	14.01	0.00	2.224	16.22	0.21	6.9	93.1	0.0	0.07	0.56	0.74	—	4.7	0.003	0.71	0.0	0.04	14.48	0.00	2.134	14.95	0.00	6.4	93.6	0.0	-0.02	0.55	0.56	0.76	—	9043	1158	1	0	1	0	0	logfile
✔	6ZH2	11211	2023-07-13	2020-06-20	3.92	4.42	3.96	4.0	0.003	0.66	0.0	0.04	14.54	0.00	2.169	15.46	0.06	7.8	92.1	0.1	-0.24	0.88	0.86	1.25	4.0	0.004	0.68	0.0	0.04	15.92	0.00	2.121	15.00	0.12	6.9	93.0	0.0	0.30	1.50	0.88	0.87	1.09	29313	3676	1	0	28	0	0	logfile
✔	7ZK4	14754	2023-07-05	2022-04-12	2.6	2.81	2.63	2.9	0.006	0.86	6.0	0.05	14.14	0.00	2.008	9.40	0.10	2.3	97.7	0.0	1.26	0.69	0.84	3.61	2.9	0.003	0.54	0.0	0.04	16.67	0.00	1.933	7.75	1.26	2.4	97.5	0.1	1.75	0.50	0.60	0.84	3.19	9337	1176	1	0	9	4	0	logfile
✔	8E4Y	27898	2023-07-03	2022-08-19	3.4	3.42	3.37	3.5	0.016	1.86	0.0	0.09	15.22	0.01	2.412	0.75	0.00	3.8	96.2	0.0	-2.41	0.56	0.75	2.88	3.5	0.003	0.50	0.0	0.04	16.51	0.00	2.204	4.03	0.00	2.5	97.5	0.0	1.32	1.32	0.69	0.88	2.47	5294	651	1	0	2	0	0	logfile
✔	8i4C	35169	2023-07-05	2023-01-19	3.08	3.30	3.15	3.4	0.007	0.81	0.0	0.14	14.14	0.01	2.195	15.02	1.13	3.1	96.9	0.0	-0.96	0.50	0.66	1.17	3.3	0.003	0.60	0.0	0.04	15.65	0.00	2.199	9.31	0.19	1.5	98.5	0.0	0.93	1.40	0.57	0.82	1.69	9752	1218	1	0	1	0	0	logfile
✔	8CV3	27007	2023-07-03	2022-05-17	3.04	2.73	2.97	3.0	0.003	0.51	0.0	0.04	14.07	0.00	2.310	2.76	0.00	2.9	97.1	0.0	1.93	0.52	0.84	2.06	3.1	0.003	0.51	0.0	0.04	14.79	0.00	2.202	4.75	0.58	2.0	98.0	0.0	2.66	0.90	0.48	0.84	2.17	3168	416	1	0	2	0	0	logfile

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