Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ZHJ	14733	2023-08-18	2022-04-06	3.53	3.10	3.39	3.3	0.003	0.55	0.0	0.04	13.02	0.00	2.151	8.47	0.04	3.6	96.4	0.0	-1.71	0.73	0.78	2.05	3.1	0.004	0.62	0.0	0.05	15.61	0.00	2.083	8.71	0.54	4.0	96.0	0.0	-1.44	2.06	0.75	0.82	2.54	74346	9528	33	0	0	0	0	logfile
✔	7W0H	32242	2023-08-14	2021-11-18	3.4	3.64	—	3.6	0.007	0.77	0.0	0.04	17.97	0.01	2.191	8.69	0.20	4.0	96.0	0.0	1.21	0.82	0.89	2.42	3.6	0.003	0.57	0.0	0.04	17.10	0.00	2.100	8.11	0.27	4.2	95.8	0.0	1.21	0.26	0.82	0.90	2.36	66850	8140	70	0	40	0	0	logfile
✔	7Q9P	13875	2023-08-21	2021-11-12	4.5	5.25	—	4.6	0.005	0.66	2.0	0.05	10.57	0.00	1.893	9.35	1.20	5.0	94.6	0.4	-0.75	0.81	0.66	—	4.7	0.004	0.70	0.0	0.04	11.89	0.00	2.014	21.08	0.00	6.2	93.7	0.2	-1.08	1.60	0.84	0.73	—	30494	3807	24	0	52	0	0	logfile
✔	7CFN	30345	2023-08-10	2020-06-27	3.0	3.32	—	3.3	0.008	1.04	0.0	0.06	10.52	0.01	1.979	7.47	0.12	2.6	97.4	0.0	-2.77	0.62	0.79	4.20	3.3	0.003	0.62	0.0	0.04	14.51	0.00	2.157	7.16	1.07	1.8	98.2	0.0	0.96	0.55	0.61	0.79	3.05	8112	1031	5	0	4	1	0	logfile
✔	7UN9	26617	2023-08-15	2022-04-09	3.3	3.14	3.20	3.3	0.017	0.90	0.0	0.04	14.81	0.01	1.849	7.74	0.05	3.2	96.8	0.0	0.82	0.64	0.83	3.05	3.3	0.003	0.54	0.0	0.04	16.90	0.00	2.096	9.11	0.47	2.2	97.8	0.0	0.96	0.46	0.67	0.87	2.57	17675	2161	18	0	89	0	0	logfile
✔	7U2A	26310	2023-08-10	2022-02-23	4.1	3.51	—	4.0	0.010	1.05	0.0	0.05	14.76	0.00	1.918	11.25	0.31	0.5	99.5	0.0	2.04	0.59	0.61	—	4.0	0.005	0.73	0.0	0.04	15.30	0.01	2.098	16.08	0.00	3.1	96.9	0.0	-0.13	1.07	0.66	0.73	—	6855	761	5	38	2	0	0	logfile
✔	7TDi	25830	2023-08-13	2021-12-31	3.3	3.81	3.62	3.6	0.005	0.81	0.0	0.04	16.22	0.01	2.159	4.24	0.85	4.4	95.5	0.1	-0.18	0.82	0.72	0.41	3.6	0.060	3.45	153.0	0.17	19.75	0.02	1.655	78.91	3.69	33.8	63.9	2.3	-7.06	1.45	0.89	0.87	1.83	117132	12936	8	0	3616	0	0	logfile
✔	8EXA	28656	2023-08-09	2022-10-25	3.14	3.45	3.09	3.4	0.004	0.54	0.0	0.03	17.45	0.00	2.223	15.79	0.40	3.6	96.4	0.0	0.27	0.61	0.69	4.07	3.4	0.003	0.52	0.0	0.03	17.87	0.00	2.219	16.00	1.21	3.6	96.4	0.0	0.46	1.14	0.60	0.68	3.76	5539	341	4	139	0	0	0	logfile
✔	8CVi	27008	2023-08-13	2022-05-18	3.4	3.54	3.20	3.4	0.003	0.49	0.0	0.03	13.53	0.00	2.073	8.79	0.05	4.0	95.9	0.1	1.49	0.55	0.83	1.22	3.4	0.003	0.58	1.0	0.04	16.27	0.00	2.023	10.85	0.42	4.0	96.0	0.0	3.71	2.21	0.58	0.84	0.83	66030	8856	33	0	0	0	0	logfile
✔	6D6Q	7808	2023-08-21	2018-04-22	3.45	3.57	—	3.5	0.006	0.74	0.0	0.05	10.12	0.00	1.778	9.85	0.06	9.9	90.1	0.0	-4.46	0.79	0.77	2.28	3.5	0.003	0.65	0.0	0.04	15.25	0.00	2.151	10.18	0.45	4.2	95.8	0.0	-0.40	0.88	0.82	0.83	1.48	31639	3889	17	61	3	0	0	logfile
✔	7WD0	32431	2023-08-21	2021-12-20	3.3	3.23	—	3.0	0.003	0.69	0.0	0.05	12.95	0.01	2.287	2.93	0.17	3.7	96.3	0.0	-3.08	0.75	0.67	1.53	3.0	0.003	0.63	0.0	0.04	15.27	0.00	2.124	9.84	0.28	4.7	95.3	0.0	-0.40	1.83	0.78	0.74	1.52	31996	4099	7	0	0	0	0	logfile
✔	7TBY	25801	2023-08-13	2021-12-22	4.0	4.05	3.80	3.9	0.003	0.61	0.0	0.04	12.90	0.00	2.155	7.36	0.00	5.0	95.0	0.0	-2.45	0.70	0.79	—	3.8	0.003	0.65	0.0	0.04	15.01	0.00	2.125	7.99	0.33	5.6	94.4	0.0	0.45	1.06	0.72	0.82	—	13281	1788	4	0	10	0	0	logfile
✔	6SEG	10155	2023-08-12	2019-07-30	3.1	3.19	—	3.2	0.006	0.86	0.0	0.05	27.88	0.01	2.283	3.10	0.00	1.3	98.7	0.0	-3.47	0.66	0.79	3.38	3.2	0.006	0.63	0.0	0.04	29.03	0.00	2.088	7.10	0.34	1.8	98.2	0.0	1.18	0.37	0.67	0.81	2.50	11689	728	10	290	0	0	0	logfile
✔	7JN4	22401	2023-08-23	2020-08-03	2.68	2.77	—	2.7	0.013	1.22	8.0	0.08	10.93	0.01	2.229	5.48	1.33	2.9	97.1	0.0	-3.84	0.78	0.85	5.69	2.7	0.004	0.66	0.0	0.04	14.73	0.00	2.186	8.74	2.56	2.9	97.1	0.0	0.54	0.52	0.78	0.87	4.29	35712	4520	32	0	0	232	0	logfile
✔	8BFN	16020	2023-08-22	2022-10-26	3.52	3.09	3.52	3.3	0.005	0.67	0.0	0.04	19.10	0.00	1.921	45.20	0.48	5.6	94.2	0.2	0.87	0.67	0.79	1.58	3.3	0.004	0.73	0.0	0.04	19.20	0.00	2.138	14.03	0.62	6.0	93.9	0.1	0.30	0.57	0.64	0.79	1.68	33400	4164	14	0	4	0	0	logfile
✔	7W4P	32311	2023-08-10	2021-11-28	3.19	2.52	—	3.2	0.006	0.75	0.0	0.05	11.95	0.01	2.166	4.69	2.18	2.8	97.1	0.1	-0.24	0.80	0.80	2.05	3.1	0.005	0.62	0.0	0.04	14.46	0.00	1.826	9.20	0.51	3.1	96.9	0.1	1.44	1.97	0.81	0.83	2.14	54408	6904	16	0	24	0	0	logfile
✔	8D97	27257	2023-08-13	2022-06-09	3.8	3.96	3.72	3.8	0.004	0.64	0.0	0.04	16.09	0.00	2.113	8.76	0.00	5.1	94.9	0.0	-2.43	0.87	0.87	2.06	3.8	0.003	0.53	0.0	0.04	16.91	0.00	2.208	7.73	0.00	3.7	96.3	0.0	-0.24	0.41	0.87	0.86	2.02	13874	1600	3	42	4	0	0	logfile
✔	8ooR	17026	2023-08-20	2023-04-05	2.87	2.10	2.97	2.7	0.011	0.96	0.0	0.06	13.93	0.01	1.914	2.74	0.00	2.7	97.3	0.0	-0.86	0.89	0.88	4.12	2.7	0.003	0.63	0.0	0.04	16.56	0.00	2.047	6.84	1.19	1.9	98.1	0.0	0.90	1.38	0.90	0.88	2.81	28371	3626	17	0	8	0	0	logfile
✔	7PDE	13335	2023-08-11	2021-08-05	4.5	4.95	—	4.5	0.006	0.79	0.0	0.04	14.84	0.00	1.869	29.42	0.19	9.2	90.8	0.0	-3.63	0.69	0.80	—	4.5	0.003	0.68	0.0	0.04	13.91	0.00	2.002	15.15	0.10	5.2	94.8	0.0	-0.01	1.35	0.68	0.79	—	9553	1187	2	0	2	0	0	logfile
✔	6L7E	0843	2023-08-24	2019-11-01	3.2	3.28	—	3.2	0.004	0.78	0.0	0.05	8.54	0.01	2.217	3.24	0.05	3.3	96.7	0.0	-4.72	0.78	0.85	3.48	3.2	0.003	0.55	0.0	0.04	14.21	0.00	2.055	6.21	0.16	2.6	97.4	0.0	1.22	2.01	0.79	0.88	3.30	97400	12270	5	0	0	0	0	logfile

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