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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8BDC | 15981 | 2024-03-21 | 2022-10-19 | 2.65 | 2.01 | — | 2.7 | 0.003 | 0.41 | 0.0 | 0.04 | 16.76 | 0.00 | 2.285 | 5.26 | 2.15 | 2.7 | 97.3 | 0.0 | 2.17 | 0.85 | 0.85 | 2.97 | 2.7 | 0.004 | 0.65 | 1.0 | 0.04 | 17.12 | 0.00 | 2.124 | 9.21 | 3.42 | 2.1 | 97.9 | 0.0 | 1.89 | 0.39 | 0.83 | 0.85 | 3.21 | 30132 | 3852 | 8 | 0 | 24 | 0 | 0 | logfile |
✔ | 5ZEB | 6920 | 2024-03-26 | 2018-02-27 | 3.4 | 3.46 | — | 3.4 | 0.010 | 1.18 | 2.0 | 0.06 | 24.03 | 0.01 | 1.088 | 18.34 | 3.23 | 8.4 | 90.3 | 1.4 | -3.95 | 0.79 | 0.77 | 1.84 | 3.4 | 0.007 | 0.80 | 0.0 | 0.04 | 23.71 | 0.01 | 1.956 | 14.34 | 3.86 | 9.4 | 90.3 | 0.3 | -1.56 | 4.01 | 0.82 | 0.84 | 1.63 | 150328 | 6095 | 56 | 4802 | 0 | 0 | 0 | logfile |
✔ | 8HRU | 34980 | 2024-03-10 | 2022-12-16 | 3.9 | 4.26 | 4.10 | 4.1 | 0.006 | 0.98 | 0.0 | 0.05 | 17.40 | 0.01 | 2.000 | 22.29 | 0.38 | 3.9 | 96.1 | 0.0 | -1.28 | 0.75 | 0.69 | 0.45 | 4.1 | 0.003 | 0.76 | 0.0 | 0.05 | 18.02 | 0.00 | 2.081 | 20.18 | 2.47 | 4.9 | 95.1 | 0.0 | -0.13 | 0.64 | 0.75 | 0.70 | 0.49 | 4870 | 597 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5iS0 | 8119 | 2024-03-15 | 2016-03-15 | 3.43 | 3.36 | 3.37 | 3.2 | 0.015 | 1.24 | 0.0 | 0.06 | 12.94 | 0.01 | 1.283 | 5.42 | 0.00 | 10.1 | 89.7 | 0.3 | -5.27 | 0.63 | 0.73 | 2.61 | 3.2 | 0.003 | 0.73 | 0.0 | 0.04 | 15.88 | 0.00 | 2.181 | 9.23 | 2.06 | 5.8 | 94.2 | 0.0 | -0.20 | 1.48 | 0.62 | 0.81 | 2.46 | 11808 | 1576 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 7Y7i | 33666 | 2024-03-15 | 2022-06-22 | 3.42 | 3.09 | 3.34 | 3.3 | 0.004 | 0.57 | 0.0 | 0.04 | 28.76 | 0.00 | 2.234 | 8.91 | 0.15 | 1.9 | 98.1 | 0.0 | 2.18 | 0.64 | 0.77 | 1.32 | 3.2 | 0.005 | 0.62 | 0.0 | 0.04 | 28.78 | 0.00 | 2.102 | 8.02 | 3.35 | 2.2 | 97.8 | 0.0 | 2.30 | 0.66 | 0.68 | 0.81 | 2.11 | 12445 | 824 | 12 | 286 | 0 | 0 | 0 | logfile |
✔ | 6LFM | 0877 | 2024-03-15 | 2019-12-03 | 3.5 | 3.89 | — | 3.9 | 0.012 | 1.14 | 0.0 | 0.07 | 15.32 | 0.01 | 2.264 | 7.38 | 0.27 | 8.3 | 91.7 | 0.0 | -5.60 | 0.63 | 0.81 | 2.29 | 3.9 | 0.003 | 0.73 | 0.0 | 0.04 | 16.95 | 0.00 | 2.116 | 14.02 | 4.01 | 4.8 | 95.2 | 0.0 | -1.88 | 0.62 | 0.62 | 0.80 | 1.35 | 10181 | 1302 | 8 | 0 | 1 | 0 | 0 | logfile |
✔ | 6SMQ | 10245 | 2024-03-24 | 2019-08-22 | 3.3 | 3.30 | — | 3.3 | 0.011 | 1.04 | 0.0 | 0.06 | 15.03 | 0.01 | 2.261 | 3.35 | 0.43 | 7.4 | 92.4 | 0.2 | -3.34 | 0.78 | 0.88 | 4.04 | 3.3 | 0.002 | 0.54 | 0.0 | 0.04 | 15.64 | 0.00 | 2.199 | 4.95 | 1.46 | 5.1 | 94.9 | 0.0 | -0.66 | 0.40 | 0.77 | 0.88 | 3.23 | 22136 | 2791 | 9 | 0 | 9 | 0 | 0 | logfile |
✔ | 7YL0 | 33901 | 2024-03-10 | 2022-07-25 | 3.2 | 3.47 | 3.15 | 3.4 | 0.016 | 2.51 | 0.0 | 0.11 | 15.56 | 0.01 | 2.515 | 18.86 | 0.00 | 5.0 | 95.0 | 0.0 | -4.14 | 0.41 | 0.74 | 4.76 | 3.4 | 0.003 | 0.73 | 0.0 | 0.04 | 13.89 | 0.00 | 2.136 | 10.54 | 2.78 | 10.0 | 90.0 | 0.0 | -4.36 | 1.69 | 0.44 | 0.78 | 5.01 | 2958 | 396 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VYK | 21462 | 2024-03-16 | 2020-02-27 | 3.2 | 3.31 | — | 3.3 | 0.010 | 1.74 | 0.0 | 0.07 | 15.96 | 0.00 | 2.122 | 3.09 | 0.00 | 4.5 | 95.5 | 0.0 | -3.22 | 0.72 | 0.81 | 3.40 | 3.3 | 0.003 | 1.19 | 0.0 | 0.04 | 15.41 | 0.00 | 2.164 | 8.03 | 1.39 | 2.7 | 97.3 | 0.0 | -0.11 | 2.52 | 0.71 | 0.85 | 3.42 | 14623 | 1869 | 12 | 0 | 7 | 0 | 0 | logfile |
✔ | 3LoS | 5137 | 2024-03-12 | 2010-02-04 | 4.3 | 2.98 | — | 3.0 | 0.008 | 2.44 | 224.0 | 0.19 | 19.87 | 0.01 | 2.259 | 87.93 | 23.89 | 17.4 | 68.9 | 13.8 | -6.57 | 0.57 | 0.49 | — | 3.2 | 0.005 | 1.29 | 0.0 | 0.06 | 15.90 | 0.01 | 2.091 | 33.18 | 0.00 | 21.9 | 74.2 | 3.9 | -4.38 | 1.32 | 0.63 | 0.56 | — | 63712 | 8512 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 6BAJ | 7074 | 2024-03-19 | 2017-10-13 | 3.2 | 3.67 | — | 3.6 | 0.008 | 1.40 | 0.0 | 0.06 | 16.65 | 0.01 | 2.131 | 6.76 | 1.74 | 6.6 | 93.0 | 0.4 | -4.66 | 0.60 | 0.79 | 3.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24318 | 3042 | 7 | 0 | 42 | 1 | 0 | logfile |
✔ | 6FF4 | 4255 | 2024-03-16 | 2018-01-03 | 3.4 | 3.67 | — | 3.6 | 0.011 | 1.31 | 0.0 | 0.11 | 15.31 | 0.01 | 1.176 | 7.18 | 1.26 | 12.9 | 86.8 | 0.3 | -4.84 | 0.75 | 0.79 | 2.77 | 3.6 | 0.003 | 0.74 | 0.0 | 0.04 | 17.19 | 0.00 | 1.932 | 13.77 | 3.32 | 11.2 | 88.7 | 0.0 | -2.22 | 0.67 | 0.76 | 0.83 | 1.89 | 72392 | 8220 | 35 | 273 | 16 | 0 | 0 | logfile |
✘ | 7D1U | 30548 | 2024-03-26 | 2020-09-15 | 2.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 52655 | 5312 | 106 | 0 | 196 | 2121 | 0 | logfile |
✔ | 7Y7V | 33671 | 2024-03-10 | 2022-06-22 | 2.2 | 2.46 | 2.24 | 2.4 | 0.005 | 0.73 | 0.0 | 0.07 | 16.08 | 0.00 | 2.078 | 5.73 | 1.11 | 3.2 | 96.8 | 0.0 | 0.09 | 0.71 | 0.86 | 4.53 | 2.4 | 0.003 | 0.65 | 0.0 | 0.05 | 15.55 | 0.00 | 2.230 | 5.50 | 3.76 | 2.3 | 97.7 | 0.0 | 1.61 | 0.34 | 0.69 | 0.87 | 4.11 | 4341 | 532 | 1 | 0 | 4 | 58 | 0 | logfile |
✔ | 7CMV | 30411 | 2024-03-11 | 2020-07-29 | 2.7 | 2.91 | — | 2.9 | 0.005 | 0.49 | 0.0 | 0.04 | 12.44 | 0.00 | 2.032 | 3.90 | 0.00 | 1.5 | 98.5 | 0.0 | 2.95 | 0.61 | 0.79 | 2.85 | 2.9 | 0.003 | 0.57 | 0.0 | 0.04 | 15.59 | 0.00 | 2.126 | 5.79 | 2.91 | 2.1 | 97.9 | 0.0 | 1.61 | 1.11 | 0.63 | 0.84 | 3.34 | 8775 | 1123 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 7QHA | 13968 | 2024-03-10 | 2021-12-11 | 2.97 | 4.06 | 3.00 | 3.8 | 0.003 | 0.59 | 0.0 | 0.04 | 12.23 | 0.00 | 2.268 | 6.68 | 0.00 | 2.7 | 97.3 | 0.0 | 1.85 | 0.69 | 0.86 | 2.37 | 3.7 | 0.004 | 0.74 | 0.0 | 0.04 | 15.51 | 0.00 | 2.104 | 9.00 | 2.28 | 2.8 | 97.2 | 0.0 | 2.07 | 0.93 | 0.69 | 0.86 | 2.04 | 5282 | 684 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7TNX | 26022 | 2024-03-10 | 2022-01-22 | 3.54 | 3.76 | — | 3.8 | 0.011 | 1.08 | 0.0 | 0.06 | 15.46 | 0.00 | 2.247 | 6.37 | 0.17 | 7.7 | 92.2 | 0.2 | -2.75 | 0.70 | 0.80 | 2.39 | 3.8 | 0.002 | 0.55 | 0.0 | 0.04 | 16.95 | 0.00 | 2.247 | 8.05 | 2.23 | 5.8 | 94.2 | 0.0 | 0.17 | 0.47 | 0.66 | 0.77 | 2.52 | 5753 | 647 | 4 | 23 | 2 | 0 | 0 | logfile |
✔ | 5W66 | 8776 | 2024-03-25 | 2017-06-16 | 3.9 | 4.50 | — | 4.1 | 0.010 | 1.62 | 55.0 | 0.09 | 14.97 | 0.01 | 1.010 | 70.90 | 4.84 | 8.5 | 87.3 | 4.2 | -3.36 | 0.67 | 0.53 | 0.71 | 4.1 | 0.005 | 0.96 | 0.0 | 0.05 | 17.72 | 0.01 | 2.000 | 29.06 | 4.13 | 8.3 | 91.0 | 0.7 | -1.01 | 1.73 | 0.87 | 0.81 | 0.80 | 48857 | 5795 | 25 | 105 | 59 | 0 | 0 | logfile |
✔ | 7S67 | 24852 | 2024-03-19 | 2021-09-13 | 3.8 | 3.64 | 3.80 | 3.9 | 0.013 | 1.39 | 0.0 | 0.07 | 12.76 | 0.01 | 1.815 | 5.58 | 0.00 | 1.5 | 98.5 | 0.0 | 0.25 | 0.70 | 0.73 | 2.10 | 3.8 | 0.004 | 0.73 | 0.0 | 0.05 | 16.39 | 0.00 | 1.924 | 13.63 | 2.59 | 2.3 | 97.7 | 0.0 | -0.09 | 2.48 | 0.71 | 0.80 | 1.65 | 23058 | 2892 | 12 | 0 | 24 | 0 | 0 | logfile |
✔ | 8B0M | 15788 | 2024-03-11 | 2022-09-07 | 3.01 | 3.39 | 3.03 | 3.3 | 0.003 | 0.66 | 0.0 | 0.04 | 11.18 | 0.00 | 2.258 | 5.92 | 0.48 | 5.7 | 94.3 | 0.0 | -0.18 | 0.57 | 0.84 | 5.07 | 3.3 | 0.002 | 0.53 | 0.0 | 0.04 | 13.40 | 0.00 | 2.219 | 6.05 | 2.16 | 5.5 | 94.5 | 0.0 | 0.78 | 1.69 | 0.57 | 0.85 | 3.77 | 4015 | 508 | 1 | 0 | 1 | 0 | 0 | logfile |