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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8DPH | 27635 | 2023-08-10 | 2022-07-15 | 3.2 | 2.17 | 3.15 | 2.0 | 0.005 | 0.59 | 0.0 | 0.05 | 9.34 | 0.00 | 2.162 | 2.82 | 0.73 | 1.4 | 98.6 | 0.0 | 1.66 | 0.76 | 0.73 | 2.48 | 2.1 | 0.003 | 0.62 | 0.0 | 0.04 | 14.05 | 0.00 | 2.202 | 5.07 | 0.24 | 2.8 | 97.2 | 0.0 | 1.06 | 1.06 | 0.78 | 0.77 | 2.24 | 8182 | 1093 | 6 | 0 | 3 | 0 | 0 | logfile |
✔ | 7SP9 | 25369 | 2023-08-10 | 2021-11-02 | 2.9 | 3.20 | — | 3.1 | 0.004 | 0.57 | 0.0 | 0.05 | 11.91 | 0.00 | 2.245 | 5.66 | 0.00 | 1.2 | 98.8 | 0.0 | 1.62 | 0.71 | 0.78 | 2.80 | 3.1 | 0.003 | 0.63 | 0.0 | 0.04 | 15.14 | 0.00 | 2.276 | 9.71 | 2.87 | 2.6 | 97.2 | 0.1 | 1.04 | 1.27 | 0.74 | 0.85 | 3.40 | 5966 | 737 | 3 | 0 | 2 | 0 | 0 | logfile |
✘ | 7VoY | 32062 | 2023-08-17 | 2021-10-15 | 4.2 | 3.14 | — | 3.1 | 0.009 | 0.97 | 0.0 | 0.10 | 14.41 | 0.01 | 2.056 | 16.17 | 1.25 | 4.6 | 95.4 | 0.0 | 0.99 | 0.45 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22119 | 2479 | 71 | 0 | 44 | 0 | 0 | logfile |
✔ | 6ZH5 | 11214 | 2023-08-22 | 2020-06-21 | 2.7 | 3.69 | — | 3.3 | 0.007 | 0.73 | 0.0 | 0.04 | 18.44 | 0.00 | 2.015 | 8.51 | 12.67 | 1.1 | 98.9 | 0.0 | -2.77 | 0.85 | 0.86 | 1.93 | 3.3 | 0.004 | 0.73 | 0.0 | 0.04 | 18.49 | 0.00 | 1.549 | 11.02 | 3.47 | 1.8 | 98.2 | 0.0 | 3.70 | 0.62 | 0.82 | 0.84 | 1.74 | 34408 | 4272 | 35 | 0 | 16 | 0 | 0 | logfile |
✔ | 7WY8 | 32887 | 2023-08-10 | 2022-02-15 | 2.83 | 2.24 | — | 2.0 | 0.007 | 0.81 | 0.0 | 0.05 | 12.03 | 0.01 | 2.220 | 1.00 | 0.00 | 4.1 | 95.9 | 0.0 | -0.39 | 0.76 | 0.76 | 3.57 | 2.0 | 0.003 | 0.57 | 0.0 | 0.04 | 15.15 | 0.00 | 2.173 | 4.56 | 2.07 | 3.2 | 96.8 | 0.0 | 1.11 | 0.42 | 0.77 | 0.78 | 2.72 | 8049 | 1015 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7L1S | 23117 | 2023-08-18 | 2020-12-15 | 3.6 | 2.22 | — | 2.3 | 0.011 | 1.81 | 37.0 | 0.12 | 14.05 | 0.01 | 2.011 | 4.65 | 4.07 | 3.3 | 96.6 | 0.2 | -0.43 | 0.62 | 0.68 | 1.03 | 1.9 | 0.003 | 0.84 | 0.0 | 0.05 | 17.89 | 0.01 | 1.910 | 18.19 | 0.78 | 4.3 | 95.7 | 0.0 | -0.16 | 1.69 | 0.65 | 0.69 | 0.79 | 24176 | 3118 | 12 | 0 | 11 | 0 | 0 | logfile |
✔ | 8DWS | 27758 | 2023-08-15 | 2022-08-02 | 3.73 | 4.92 | 3.73 | 3.6 | 0.004 | 0.79 | 4.0 | 0.05 | 14.37 | 0.00 | 2.013 | 6.84 | 0.32 | 8.2 | 91.2 | 0.6 | -1.47 | 0.69 | 0.45 | 0.78 | 3.6 | 0.007 | 0.92 | 0.0 | 0.05 | 15.86 | 0.00 | 2.010 | 32.17 | 0.21 | 9.9 | 89.5 | 0.6 | -1.42 | 1.99 | 0.90 | 0.83 | 0.71 | 17229 | 2182 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JSK | 22457 | 2023-08-13 | 2020-08-14 | 3.04 | 3.44 | — | 3.4 | 0.011 | 1.16 | 0.0 | 0.20 | 14.69 | 0.01 | 1.439 | 6.57 | 4.74 | 9.2 | 90.6 | 0.2 | -0.67 | 0.61 | 0.77 | 2.70 | 3.4 | 0.003 | 0.96 | 2.0 | 0.21 | 15.42 | 0.00 | 2.077 | 11.08 | 0.75 | 8.2 | 91.6 | 0.2 | 0.74 | 2.20 | 0.61 | 0.80 | 2.22 | 15036 | 936 | 4 | 0 | 8 | 0 | 7664 | logfile |
✔ | 6oVH | 20212 | 2023-08-12 | 2019-05-07 | 2.6 | 2.81 | 2.71 | 2.8 | 0.014 | 1.10 | 0.0 | 0.04 | 17.48 | 0.01 | 1.203 | 1.15 | 4.55 | 1.0 | 99.0 | 0.0 | -6.34 | 0.75 | 0.87 | 4.63 | 2.8 | 0.003 | 0.75 | 0.0 | 0.04 | 18.69 | 0.00 | 2.055 | 2.87 | 0.38 | 0.8 | 99.2 | 0.0 | 2.63 | 0.98 | 0.77 | 0.89 | 3.77 | 10895 | 1272 | 36 | 0 | 68 | 171 | 0 | logfile |
✔ | 8HW1 | 35080 | 2023-08-20 | 2022-12-28 | 3.13 | 3.07 | 2.93 | 3.2 | 0.028 | 2.49 | 0.0 | 0.29 | 22.01 | 0.03 | 2.137 | 14.51 | 6.74 | 11.3 | 88.7 | 0.0 | -2.57 | 0.68 | 0.85 | 3.07 | 3.2 | 0.003 | 0.90 | 0.0 | 0.05 | 19.99 | 0.00 | 2.173 | 7.18 | 0.05 | 9.4 | 90.6 | 0.0 | -0.34 | 0.45 | 0.66 | 0.86 | 3.07 | 29271 | 2651 | 22 | 0 | 143 | 0 | 0 | logfile |
✔ | 6X35 | 22018 | 2023-08-11 | 2020-05-21 | 4.2 | 4.14 | — | 4.2 | 0.001 | 0.37 | 0.0 | 0.03 | 8.42 | 0.00 | 2.202 | 3.37 | 0.05 | 1.8 | 98.1 | 0.0 | -1.11 | 0.52 | 0.67 | — | 4.1 | 0.003 | 0.64 | 0.0 | 0.04 | 11.49 | 0.00 | 2.229 | 8.53 | 0.02 | 3.2 | 96.8 | 0.0 | 1.06 | 1.69 | 0.57 | 0.72 | — | 111888 | 14740 | 16 | 0 | 1432 | 0 | 0 | logfile |
✔ | 6oKT | 20104 | 2023-08-19 | 2019-04-15 | 4.2 | 4.31 | — | 4.2 | 0.007 | 0.96 | 0.0 | 0.06 | 15.35 | 0.01 | 2.188 | 7.94 | 1.60 | 11.9 | 88.1 | 0.0 | -4.31 | 0.73 | 0.81 | — | 4.2 | 0.002 | 0.62 | 0.0 | 0.04 | 13.62 | 0.00 | 2.123 | 10.59 | 0.00 | 7.9 | 92.1 | 0.0 | -2.29 | 0.58 | 0.73 | 0.80 | — | 27048 | 3451 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GZ1 | 34387 | 2023-08-12 | 2022-09-24 | 3.4 | 3.77 | 3.44 | 3.7 | 0.004 | 0.68 | 0.0 | 0.05 | 14.29 | 0.00 | 1.940 | 11.26 | 0.00 | 5.0 | 95.0 | 0.0 | 0.65 | 0.55 | 0.77 | 2.03 | 3.7 | 0.005 | 0.73 | 0.0 | 0.04 | 16.26 | 0.00 | 2.140 | 10.34 | 0.78 | 5.3 | 94.7 | 0.0 | 0.91 | 0.53 | 0.57 | 0.80 | 1.79 | 11912 | 1445 | 10 | 0 | 19 | 0 | 0 | logfile |
✔ | 6KLN | 0712 | 2023-08-12 | 2019-07-30 | 3.4 | 4.21 | — | 3.7 | 0.009 | 0.86 | 0.0 | 0.05 | 16.34 | 0.00 | 1.903 | 12.23 | 11.46 | 8.4 | 91.6 | 0.0 | -4.65 | 0.70 | 0.88 | 2.12 | 3.8 | 0.003 | 0.64 | 0.0 | 0.04 | 15.13 | 0.00 | 1.923 | 8.62 | 0.16 | 4.0 | 96.0 | 0.0 | -0.41 | 0.58 | 0.71 | 0.90 | 1.85 | 11748 | 1488 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 7KXY | 23067 | 2023-08-11 | 2020-12-05 | 4.4 | 4.55 | 4.44 | 4.5 | 0.004 | 0.82 | 0.0 | 0.05 | 15.13 | 0.01 | 2.197 | 19.28 | 7.18 | 26.0 | 69.8 | 4.2 | -5.90 | 0.63 | 0.60 | — | 4.5 | 0.003 | 0.82 | 0.0 | 0.05 | 14.45 | 0.01 | 2.088 | 21.63 | 0.10 | 15.0 | 84.9 | 0.1 | -4.55 | 1.26 | 0.63 | 0.60 | — | 9510 | 1181 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 6NT4 | 0501 | 2023-08-12 | 2019-01-28 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11924 | 1406 | 5 | 0 | 20 | 0 | 0 | logfile |
✔ | 7WY0 | 32883 | 2023-08-10 | 2022-02-15 | 2.83 | 2.21 | — | 2.0 | 0.007 | 0.87 | 0.0 | 0.06 | 11.98 | 0.00 | 1.690 | 7.73 | 0.00 | 6.2 | 93.8 | 0.0 | -1.00 | 0.74 | 0.73 | 3.63 | 2.0 | 0.004 | 0.68 | 0.0 | 0.04 | 15.36 | 0.00 | 2.124 | 12.48 | 1.97 | 5.3 | 94.7 | 0.0 | 0.15 | 0.47 | 0.75 | 0.75 | 2.68 | 8723 | 1112 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DPG | 27634 | 2023-08-10 | 2022-07-15 | 3.6 | 2.36 | 3.57 | 2.2 | 0.002 | 0.49 | 0.0 | 0.04 | 9.47 | 0.00 | 2.151 | 4.40 | 0.61 | 0.9 | 99.1 | 0.0 | 1.82 | 0.73 | 0.69 | 1.78 | 2.1 | 0.002 | 0.54 | 0.0 | 0.04 | 13.50 | 0.00 | 2.090 | 5.22 | 0.12 | 2.2 | 97.8 | 0.0 | 1.05 | 1.11 | 0.76 | 0.72 | 1.84 | 8162 | 1093 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 8F7X | 28912 | 2023-08-11 | 2022-11-20 | 3.28 | 3.38 | 3.18 | 3.4 | 0.004 | 0.88 | 0.0 | 0.05 | 8.64 | 0.01 | 2.274 | 2.87 | 0.10 | 2.1 | 97.9 | 0.0 | 0.54 | 0.59 | 0.78 | 2.02 | 3.3 | 0.003 | 0.61 | 0.0 | 0.04 | 14.55 | 0.00 | 2.042 | 6.42 | 0.62 | 2.0 | 98.0 | 0.0 | 1.46 | 1.10 | 0.62 | 0.85 | 2.47 | 8902 | 1145 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UWJ | 26833 | 2023-08-09 | 2022-05-03 | 3.2 | 2.38 | 3.23 | 2.0 | 0.004 | 0.79 | 1.0 | 0.05 | 13.05 | 0.01 | 2.189 | 11.24 | 0.00 | 4.1 | 95.9 | 0.0 | -2.14 | 0.66 | 0.61 | 2.04 | 1.5 | 0.003 | 0.69 | 0.0 | 0.04 | 15.07 | 0.00 | 2.209 | 10.86 | 1.00 | 5.8 | 94.2 | 0.0 | -2.11 | 0.45 | 0.68 | 0.65 | 1.84 | 5314 | 664 | 6 | 0 | 6 | 0 | 0 | logfile |