Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7VAV	31866	2023-02-27	2021-08-30	2.8	2.66	3.31	3.2	0.002	0.49	0.0	0.04	13.26	0.00	2.035	3.96	0.00	1.5	98.5	0.0	1.80	0.63	0.80	2.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29520	3787	14	0	4	0	0	logfile
✔	7o6Y	12741	2023-02-24	2021-04-12	3.4	3.51	3.37	3.4	0.009	1.09	11.0	0.10	15.47	0.01	1.892	15.31	0.65	3.5	96.4	0.1	-0.16	0.68	0.83	2.82	3.4	0.004	0.65	0.0	0.04	16.47	0.00	1.441	10.50	0.47	3.6	96.4	0.0	0.44	1.03	0.71	0.85	2.46	64866	7927	67	0	49	0	0	logfile
✔	7K1S	22629	2023-02-21	2020-09-08	3.9	4.13	—	4.1	0.006	0.89	0.0	0.06	14.28	0.01	1.647	15.42	0.38	2.1	97.9	0.0	-2.61	0.73	0.73	1.66	4.1	0.003	0.63	0.0	0.04	16.29	0.00	2.120	10.52	0.38	3.9	96.1	0.0	-0.54	1.26	0.76	0.76	1.39	14409	1752	9	0	21	0	0	logfile
✔	7VAR	31860	2023-02-27	2021-08-30	2.9	2.76	2.90	2.9	0.003	0.56	1.0	0.04	13.21	0.00	2.038	2.97	0.06	1.2	98.8	0.0	1.46	0.67	0.85	3.73	2.8	0.005	0.63	0.0	0.05	16.78	0.01	1.929	5.28	1.91	2.4	97.6	0.0	0.60	1.04	0.73	0.90	3.69	29520	3787	14	0	4	0	0	logfile
✔	7ZTD	14958	2023-02-25	2022-05-09	4.6	4.11	4.55	4.3	0.007	1.04	0.0	0.06	15.69	0.01	2.097	8.15	0.00	5.4	94.6	0.0	-2.32	0.70	0.80	—	4.4	0.003	0.68	0.0	0.04	13.92	0.00	2.049	9.84	0.00	4.9	95.1	0.0	0.37	10.50	0.68	0.78	—	25740	2928	20	0	548	0	0	logfile
✔	6VXX	21452	2023-02-24	2020-02-25	2.8	3.32	—	3.2	0.016	1.35	0.0	0.09	10.67	0.01	2.389	0.81	0.23	2.4	97.6	0.0	0.27	0.73	0.75	3.36	3.2	0.004	0.62	0.0	0.05	14.44	0.00	2.179	7.15	2.31	3.3	96.7	0.0	0.15	0.69	0.72	0.80	3.07	23694	2916	21	0	63	0	0	logfile
✔	8E98	27959	2023-02-22	2022-08-26	3.75	4.03	3.75	3.8	0.011	1.07	1.0	0.05	15.32	0.01	2.155	6.38	0.15	7.9	92.1	0.0	-1.29	0.79	0.76	1.70	3.8	0.003	0.68	0.0	0.05	15.34	0.00	2.189	6.97	0.29	7.7	92.3	0.1	-0.70	0.44	0.80	0.77	1.61	17208	2583	11	0	18	0	0	logfile
✔	7Aio	11800	2023-02-21	2020-09-28	3.31	4.02	3.39	3.9	0.006	0.77	0.0	0.11	12.16	0.01	2.205	9.32	0.83	2.9	97.0	0.1	-1.55	0.68	0.75	1.72	3.9	0.003	0.69	0.0	0.04	15.07	0.00	2.222	11.26	0.42	3.9	96.0	0.1	1.02	0.71	0.65	0.80	1.37	13915	1819	6	0	8	0	0	logfile
✔	7CAK	30333	2023-02-27	2020-06-08	3.58	3.74	—	3.5	0.027	1.65	3.0	0.09	11.55	0.01	1.082	48.79	1.80	9.4	89.8	0.8	-4.79	0.72	0.69	2.67	3.5	0.003	0.67	0.0	0.04	13.35	0.00	2.025	12.05	0.06	5.2	94.7	0.1	-0.98	1.25	0.78	0.77	1.99	30263	3771	27	0	60	0	0	logfile
✔	7WFG	32465	2023-02-19	2021-12-26	4.33	4.89	—	4.3	0.006	1.01	1.0	0.06	11.46	0.01	2.204	8.95	1.08	12.3	87.5	0.2	-5.06	0.68	0.68	—	4.3	0.003	0.79	0.0	0.05	12.88	0.00	2.119	21.37	0.36	11.3	88.6	0.1	-2.50	1.58	0.71	0.75	—	9836	1246	11	0	125	0	0	logfile
✔	7NVN	12607	2023-02-27	2021-03-15	3.0	3.12	2.93	3.1	0.004	0.62	0.0	0.04	14.51	0.00	1.909	8.75	1.66	3.2	96.7	0.1	-2.07	0.64	0.77	2.98	3.1	0.003	0.63	0.0	0.04	16.96	0.00	1.103	10.11	2.54	3.1	96.9	0.0	0.86	1.19	0.73	0.85	2.77	69139	8970	51	0	48	19	0	logfile
✔	7T8C	25744	2023-02-26	2021-12-16	4.5	3.21	4.51	4.6	0.001	0.42	0.0	0.04	7.59	0.00	2.347	5.08	0.41	3.6	96.4	0.0	0.76	0.63	0.54	—	4.2	0.002	0.64	0.0	0.04	10.96	0.00	2.130	10.96	0.00	4.6	95.4	0.0	0.62	1.08	0.66	0.61	—	28952	3626	7	0	0	0	0	logfile
✔	7VAT	31863	2023-02-27	2021-08-30	3.2	2.73	3.10	3.1	0.003	0.53	0.0	0.04	13.31	0.00	1.997	3.69	0.00	1.8	98.2	0.0	1.37	0.63	0.83	3.27	3.0	0.006	0.68	0.0	0.05	16.22	0.01	2.035	6.37	0.32	3.4	96.6	0.0	0.35	0.65	0.69	0.87	3.15	29520	3787	14	0	4	0	0	logfile
✘	7LiA	23365	2023-02-17	2021-01-26	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6279	767	5	0	27	0	0	logfile
✔	6XiT	22200	2023-02-23	2020-06-21	3.3	2.22	—	3.5	0.010	0.97	0.0	0.06	14.19	0.01	1.894	10.11	0.74	4.0	96.0	0.0	-3.79	0.65	0.73	3.11	3.5	0.002	0.58	0.0	0.04	16.42	0.00	2.188	11.97	0.37	2.5	97.5	0.0	0.40	1.12	0.69	0.81	2.04	10403	1308	8	0	7	0	0	logfile
✔	7UQK	26697	2023-02-26	2022-04-19	3.1	2.64	3.08	3.1	0.005	0.94	1.0	0.05	16.27	0.01	2.262	5.84	0.37	7.6	92.3	0.1	-4.31	0.61	0.76	2.39	3.0	0.002	0.61	0.0	0.04	17.32	0.00	2.164	9.20	0.18	5.6	94.4	0.0	-0.19	1.08	0.66	0.82	1.82	29142	3631	12	0	5	0	0	logfile
✔	7MPG	23933	2023-02-23	2021-05-04	3.4	3.98	—	4.0	0.003	0.71	0.0	0.06	13.49	0.00	1.908	15.24	0.00	6.1	93.7	0.2	-1.25	0.57	0.67	1.15	3.9	0.004	0.76	0.0	0.05	16.43	0.01	2.104	15.81	0.43	5.4	94.4	0.2	-0.90	0.89	0.59	0.81	1.27	20366	2640	12	0	3	0	0	logfile
✔	6W4o	21535	2023-02-26	2020-03-11	4.8	5.05	4.72	4.7	0.004	0.77	1.0	0.05	10.85	0.00	0.834	15.75	0.91	3.0	96.7	0.2	-1.53	0.83	0.70	—	4.7	0.004	0.77	0.0	0.05	12.85	0.00	2.113	20.94	0.00	2.5	97.4	0.2	0.60	1.60	0.89	0.82	—	14475	1789	13	0	0	0	0	logfile
✘	6BPZ	7128	2023-02-23	2017-11-27	3.8	3.99	—	3.8	0.010	1.55	0.0	0.08	11.48	0.01	2.260	3.97	0.14	7.9	91.8	0.2	-4.66	0.55	0.66	1.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21453	2523	3	0	177	0	0	logfile
✘	7Q9K	13872	2023-02-26	2021-11-12	4.5	7.17	—	4.5	0.004	0.85	1.0	0.05	11.02	0.01	1.447	5.50	0.44	3.7	95.9	0.4	0.13	0.82	0.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27225	3388	25	0	60	0	0	logfile

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