Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DPH	27635	2023-08-10	2022-07-15	3.2	2.17	3.15	2.0	0.005	0.59	0.0	0.05	9.34	0.00	2.162	2.82	0.73	1.4	98.6	0.0	1.66	0.76	0.73	2.48	2.1	0.003	0.62	0.0	0.04	14.05	0.00	2.202	5.07	0.24	2.8	97.2	0.0	1.06	1.06	0.78	0.77	2.24	8182	1093	6	0	3	0	0	logfile
✔	7SP9	25369	2023-08-10	2021-11-02	2.9	3.20	—	3.1	0.004	0.57	0.0	0.05	11.91	0.00	2.245	5.66	0.00	1.2	98.8	0.0	1.62	0.71	0.78	2.80	3.1	0.003	0.63	0.0	0.04	15.14	0.00	2.276	9.71	2.87	2.6	97.2	0.1	1.04	1.27	0.74	0.85	3.40	5966	737	3	0	2	0	0	logfile
✘	7VoY	32062	2023-08-17	2021-10-15	4.2	3.14	—	3.1	0.009	0.97	0.0	0.10	14.41	0.01	2.056	16.17	1.25	4.6	95.4	0.0	0.99	0.45	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22119	2479	71	0	44	0	0	logfile
✔	6ZH5	11214	2023-08-22	2020-06-21	2.7	3.69	—	3.3	0.007	0.73	0.0	0.04	18.44	0.00	2.015	8.51	12.67	1.1	98.9	0.0	-2.77	0.85	0.86	1.93	3.3	0.004	0.73	0.0	0.04	18.49	0.00	1.549	11.02	3.47	1.8	98.2	0.0	3.70	0.62	0.82	0.84	1.74	34408	4272	35	0	16	0	0	logfile
✔	7WY8	32887	2023-08-10	2022-02-15	2.83	2.24	—	2.0	0.007	0.81	0.0	0.05	12.03	0.01	2.220	1.00	0.00	4.1	95.9	0.0	-0.39	0.76	0.76	3.57	2.0	0.003	0.57	0.0	0.04	15.15	0.00	2.173	4.56	2.07	3.2	96.8	0.0	1.11	0.42	0.77	0.78	2.72	8049	1015	5	0	0	0	0	logfile
✔	7L1S	23117	2023-08-18	2020-12-15	3.6	2.22	—	2.3	0.011	1.81	37.0	0.12	14.05	0.01	2.011	4.65	4.07	3.3	96.6	0.2	-0.43	0.62	0.68	1.03	1.9	0.003	0.84	0.0	0.05	17.89	0.01	1.910	18.19	0.78	4.3	95.7	0.0	-0.16	1.69	0.65	0.69	0.79	24176	3118	12	0	11	0	0	logfile
✔	8DWS	27758	2023-08-15	2022-08-02	3.73	4.92	3.73	3.6	0.004	0.79	4.0	0.05	14.37	0.00	2.013	6.84	0.32	8.2	91.2	0.6	-1.47	0.69	0.45	0.78	3.6	0.007	0.92	0.0	0.05	15.86	0.00	2.010	32.17	0.21	9.9	89.5	0.6	-1.42	1.99	0.90	0.83	0.71	17229	2182	7	0	0	0	0	logfile
✔	7JSK	22457	2023-08-13	2020-08-14	3.04	3.44	—	3.4	0.011	1.16	0.0	0.20	14.69	0.01	1.439	6.57	4.74	9.2	90.6	0.2	-0.67	0.61	0.77	2.70	3.4	0.003	0.96	2.0	0.21	15.42	0.00	2.077	11.08	0.75	8.2	91.6	0.2	0.74	2.20	0.61	0.80	2.22	15036	936	4	0	8	0	7664	logfile
✔	6oVH	20212	2023-08-12	2019-05-07	2.6	2.81	2.71	2.8	0.014	1.10	0.0	0.04	17.48	0.01	1.203	1.15	4.55	1.0	99.0	0.0	-6.34	0.75	0.87	4.63	2.8	0.003	0.75	0.0	0.04	18.69	0.00	2.055	2.87	0.38	0.8	99.2	0.0	2.63	0.98	0.77	0.89	3.77	10895	1272	36	0	68	171	0	logfile
✔	8HW1	35080	2023-08-20	2022-12-28	3.13	3.07	2.93	3.2	0.028	2.49	0.0	0.29	22.01	0.03	2.137	14.51	6.74	11.3	88.7	0.0	-2.57	0.68	0.85	3.07	3.2	0.003	0.90	0.0	0.05	19.99	0.00	2.173	7.18	0.05	9.4	90.6	0.0	-0.34	0.45	0.66	0.86	3.07	29271	2651	22	0	143	0	0	logfile
✔	6X35	22018	2023-08-11	2020-05-21	4.2	4.14	—	4.2	0.001	0.37	0.0	0.03	8.42	0.00	2.202	3.37	0.05	1.8	98.1	0.0	-1.11	0.52	0.67	—	4.1	0.003	0.64	0.0	0.04	11.49	0.00	2.229	8.53	0.02	3.2	96.8	0.0	1.06	1.69	0.57	0.72	—	111888	14740	16	0	1432	0	0	logfile
✔	6oKT	20104	2023-08-19	2019-04-15	4.2	4.31	—	4.2	0.007	0.96	0.0	0.06	15.35	0.01	2.188	7.94	1.60	11.9	88.1	0.0	-4.31	0.73	0.81	—	4.2	0.002	0.62	0.0	0.04	13.62	0.00	2.123	10.59	0.00	7.9	92.1	0.0	-2.29	0.58	0.73	0.80	—	27048	3451	7	0	0	0	0	logfile
✔	8GZ1	34387	2023-08-12	2022-09-24	3.4	3.77	3.44	3.7	0.004	0.68	0.0	0.05	14.29	0.00	1.940	11.26	0.00	5.0	95.0	0.0	0.65	0.55	0.77	2.03	3.7	0.005	0.73	0.0	0.04	16.26	0.00	2.140	10.34	0.78	5.3	94.7	0.0	0.91	0.53	0.57	0.80	1.79	11912	1445	10	0	19	0	0	logfile
✔	6KLN	0712	2023-08-12	2019-07-30	3.4	4.21	—	3.7	0.009	0.86	0.0	0.05	16.34	0.00	1.903	12.23	11.46	8.4	91.6	0.0	-4.65	0.70	0.88	2.12	3.8	0.003	0.64	0.0	0.04	15.13	0.00	1.923	8.62	0.16	4.0	96.0	0.0	-0.41	0.58	0.71	0.90	1.85	11748	1488	8	0	8	0	0	logfile
✔	7KXY	23067	2023-08-11	2020-12-05	4.4	4.55	4.44	4.5	0.004	0.82	0.0	0.05	15.13	0.01	2.197	19.28	7.18	26.0	69.8	4.2	-5.90	0.63	0.60	—	4.5	0.003	0.82	0.0	0.05	14.45	0.01	2.088	21.63	0.10	15.0	84.9	0.1	-4.55	1.26	0.63	0.60	—	9510	1181	2	0	0	0	0	logfile
✘	6NT4	0501	2023-08-12	2019-01-28	3.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11924	1406	5	0	20	0	0	logfile
✔	7WY0	32883	2023-08-10	2022-02-15	2.83	2.21	—	2.0	0.007	0.87	0.0	0.06	11.98	0.00	1.690	7.73	0.00	6.2	93.8	0.0	-1.00	0.74	0.73	3.63	2.0	0.004	0.68	0.0	0.04	15.36	0.00	2.124	12.48	1.97	5.3	94.7	0.0	0.15	0.47	0.75	0.75	2.68	8723	1112	5	0	0	0	0	logfile
✔	8DPG	27634	2023-08-10	2022-07-15	3.6	2.36	3.57	2.2	0.002	0.49	0.0	0.04	9.47	0.00	2.151	4.40	0.61	0.9	99.1	0.0	1.82	0.73	0.69	1.78	2.1	0.002	0.54	0.0	0.04	13.50	0.00	2.090	5.22	0.12	2.2	97.8	0.0	1.05	1.11	0.76	0.72	1.84	8162	1093	6	0	2	0	0	logfile
✔	8F7X	28912	2023-08-11	2022-11-20	3.28	3.38	3.18	3.4	0.004	0.88	0.0	0.05	8.64	0.01	2.274	2.87	0.10	2.1	97.9	0.0	0.54	0.59	0.78	2.02	3.3	0.003	0.61	0.0	0.04	14.55	0.00	2.042	6.42	0.62	2.0	98.0	0.0	1.46	1.10	0.62	0.85	2.47	8902	1145	6	0	0	0	0	logfile
✔	7UWJ	26833	2023-08-09	2022-05-03	3.2	2.38	3.23	2.0	0.004	0.79	1.0	0.05	13.05	0.01	2.189	11.24	0.00	4.1	95.9	0.0	-2.14	0.66	0.61	2.04	1.5	0.003	0.69	0.0	0.04	15.07	0.00	2.209	10.86	1.00	5.8	94.2	0.0	-2.11	0.45	0.68	0.65	1.84	5314	664	6	0	6	0	0	logfile

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