Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RYQ	24745	2022-11-29	2021-08-25	4.6	6.00	4.65	4.8	0.005	1.08	0.0	0.06	15.48	0.01	1.251	39.37	6.25	10.7	88.9	0.4	-1.51	0.85	0.76	—	4.8	0.003	0.77	0.0	0.04	14.07	0.00	2.218	15.93	0.00	6.6	93.4	0.0	-0.30	1.23	0.85	0.77	—	4332	527	1	0	0	0	0	logfile
✔	7N0L	24108	2022-11-29	2021-05-25	2.8	2.17	—	3.1	0.003	0.52	0.0	0.04	18.50	0.00	1.169	9.49	9.23	2.0	98.0	0.0	-6.10	0.56	0.80	3.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5270	626	4	0	2	0	0	logfile
✔	7RSQ	24677	2022-11-29	2021-08-11	3.8	4.03	3.73	4.1	0.008	0.80	0.0	0.05	12.74	0.00	2.360	4.01	2.88	3.0	97.0	0.0	-0.64	0.63	0.68	1.39	4.2	0.002	0.51	0.0	0.03	15.35	0.00	2.389	2.76	0.00	2.6	97.4	0.0	2.59	1.83	0.63	0.70	1.77	3970	246	1	0	0	0	1958	logfile
✔	7EZV	31391	2022-11-29	2021-06-02	3.3	3.71	—	3.5	0.005	0.71	0.0	0.05	13.54	0.01	2.034	14.66	0.75	8.4	91.3	0.3	-0.96	0.74	0.85	3.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4937	632	5	0	0	0	0	logfile
✔	7EY4	31377	2022-11-29	2021-05-29	3.69	3.90	—	3.9	0.007	0.89	0.0	0.05	14.08	0.01	2.150	10.63	0.20	13.5	86.1	0.4	-2.54	0.63	0.78	3.57	3.9	0.003	0.75	0.0	0.05	16.16	0.01	2.183	9.10	0.40	10.3	89.7	0.0	-1.58	1.30	0.65	0.81	3.07	4683	585	5	0	3	0	0	logfile
✔	7EYA	31380	2022-11-29	2021-05-30	3.77	3.98	—	4.0	0.008	0.99	0.0	0.04	13.90	0.01	2.142	8.20	0.00	7.6	92.2	0.2	-2.30	0.60	0.77	2.21	4.0	0.003	0.64	0.0	0.04	16.17	0.01	2.170	9.53	0.60	7.0	92.8	0.2	-1.66	1.17	0.60	0.77	2.28	4629	576	5	0	3	0	0	logfile
✔	7M62	23687	2022-11-29	2021-03-25	3.9	3.91	—	4.3	0.007	1.13	0.0	0.07	14.83	0.00	2.321	32.83	0.00	23.3	76.7	0.0	-4.97	0.55	0.62	2.27	4.3	0.003	0.99	0.0	0.05	15.87	0.00	2.105	21.17	0.00	22.7	77.3	0.0	-4.56	2.11	0.57	0.65	3.17	2380	320	10	0	10	0	0	logfile
✔	7M65	23689	2022-11-29	2021-03-25	4.1	4.11	—	4.3	0.009	1.40	0.0	0.10	12.05	0.00	2.392	33.63	0.00	17.6	82.4	0.0	-6.09	0.52	0.73	—	4.2	0.005	0.96	0.0	0.05	12.00	0.00	2.126	25.73	0.00	17.3	82.7	0.0	-6.33	4.44	0.52	0.73	—	2025	275	10	0	5	0	0	logfile
✔	7M64	23688	2022-11-29	2021-03-25	4.0	4.02	—	4.3	0.008	1.15	0.0	0.07	10.07	0.00	2.451	19.77	0.00	8.7	91.3	0.0	-3.84	0.52	0.75	—	4.3	0.003	0.90	0.0	0.04	11.30	0.00	2.242	6.78	0.00	5.2	94.8	0.0	-4.00	1.14	0.51	0.74	—	1850	250	10	0	10	0	0	logfile
✔	7M61	23686	2022-11-29	2021-03-25	3.8	3.83	—	4.1	0.005	1.01	0.0	0.08	12.79	0.00	2.218	23.57	0.00	14.3	85.7	0.0	-4.63	0.49	0.73	2.45	3.9	0.004	0.78	0.0	0.05	14.97	0.00	2.122	21.71	1.03	14.8	85.2	0.0	-4.62	0.86	0.47	0.75	2.83	1690	230	10	0	10	0	0	logfile
✔	7RTV	24690	2022-11-29	2021-08-15	3.96	4.06	—	4.1	0.003	0.68	0.0	0.04	16.49	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.004	0.87	0.0	0.04	18.39	0.00	2.192	15.77	0.00	2.5	97.5	0.0	3.10	0.49	0.42	0.64	-0.08	2881	366	3	0	6	0	0	logfile
✔	7FiJ	31599	2022-11-29	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	1.3	0.007	0.96	0.0	0.05	12.41	0.00	2.193	14.37	2.50	18.3	81.7	0.0	-2.16	0.76	0.61	0.55	2.86	3061	561	1	0	0	0	0	logfile
✔	7K9K	22751	2022-11-29	2020-09-29	3.14	3.44	3.39	3.5	0.006	0.93	0.0	0.06	13.39	0.01	2.188	11.03	0.00	3.8	96.2	0.0	-1.35	0.46	0.77	2.35	3.5	0.004	0.68	0.0	0.04	15.44	0.00	2.201	10.08	0.29	2.8	97.2	0.0	-1.04	0.44	0.46	0.79	2.00	3202	402	4	0	4	0	0	logfile
✔	7K9i	22749	2022-11-29	2020-09-29	3.3	3.72	3.48	3.6	0.005	0.71	0.0	0.05	12.68	0.00	2.118	12.07	0.00	3.6	96.4	0.0	-0.86	0.55	0.82	3.38	3.6	0.003	0.71	0.0	0.04	14.44	0.00	2.179	13.00	0.28	4.3	95.7	0.0	-0.56	1.62	0.53	0.82	2.68	3295	423	4	0	1	0	0	logfile
✔	7RR0	24649	2022-11-29	2021-08-08	3.12	3.40	—	3.4	0.004	0.97	0.0	0.06	12.18	0.01	2.327	2.79	0.00	1.4	98.6	0.0	0.12	0.75	0.77	2.73	3.4	0.003	0.75	0.0	0.04	15.98	0.00	2.216	11.32	0.00	3.6	96.4	0.0	-0.08	1.26	0.77	0.81	2.73	3297	422	4	0	1	0	0	logfile
✔	7P2Q	13172	2022-11-29	2021-07-06	4.9	4.54	—	4.3	0.003	0.80	0.0	0.05	8.69	0.01	2.264	4.28	0.00	5.0	95.0	0.0	-3.09	0.77	0.72	—	4.3	0.003	0.75	0.0	0.04	12.53	0.00	2.212	14.61	0.00	4.7	95.3	0.0	-0.39	1.80	0.80	0.74	—	4780	587	5	0	5	0	0	logfile
✔	7P2P	13171	2022-11-29	2021-07-06	4.9	4.40	5.09	4.3	0.005	1.08	0.0	0.07	11.21	0.01	2.325	4.37	0.19	8.1	91.9	0.0	-3.94	0.76	0.66	—	4.2	0.003	0.83	0.0	0.05	12.94	0.01	2.198	17.60	0.19	7.4	92.6	0.0	-1.97	1.19	0.78	0.72	—	4783	587	5	0	5	0	0	logfile
✔	7E0F	30931	2022-11-29	2021-01-27	3.02	3.18	—	3.5	0.016	0.99	0.0	0.07	15.88	0.00	2.341	9.76	0.00	12.8	87.2	0.0	-5.10	0.39	0.81	5.04	3.4	0.004	0.64	0.0	0.05	16.06	0.00	2.487	5.37	0.00	9.2	90.8	0.0	-3.48	0.60	0.40	0.81	3.91	2022	294	6	0	0	0	0	logfile
✔	7DWV	30887	2022-11-29	2021-01-18	3.07	2.95	—	3.6	0.007	0.80	0.0	0.06	14.69	0.00	2.258	17.63	0.00	26.8	73.2	0.0	-7.45	0.41	0.75	4.09	4.1	0.004	0.73	0.0	0.05	17.17	0.00	2.189	19.08	0.00	23.2	76.8	0.0	-5.96	1.50	0.41	0.75	2.79	2064	258	6	0	0	0	0	logfile
✔	7SK1	25169	2022-11-29	2021-10-19	3.43	3.92	3.64	4.0	0.009	1.07	0.0	0.06	12.81	0.01	2.254	1.39	0.43	3.8	96.2	0.0	1.09	0.59	0.73	1.99	4.0	0.003	0.63	0.0	0.04	15.96	0.01	2.301	7.30	0.43	4.2	95.8	0.0	0.11	0.58	0.59	0.74	0.71	4291	524	4	0	7	0	0	logfile

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