Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oG6	12879	2023-02-16	2021-05-06	3.3	3.47	—	2.9	0.008	0.82	0.0	0.04	17.33	0.01	2.325	7.36	6.10	9.6	90.4	0.0	-4.47	0.28	0.82	2.77	2.9	0.003	0.60	0.0	0.04	16.45	0.00	2.215	10.56	0.00	6.6	93.4	0.0	-0.32	0.52	0.27	0.84	3.03	1602	199	2	5	0	0	0	logfile
✔	7QKH	14042	2023-02-17	2021-12-17	3.17	3.37	2.07	3.5	0.011	2.48	5.0	0.19	15.22	0.01	2.470	1.29	0.00	14.6	85.4	0.0	-3.56	0.37	0.74	3.98	3.5	0.003	0.96	0.0	0.22	15.30	0.00	2.124	7.42	0.00	5.2	94.8	0.0	-2.68	2.29	0.32	0.70	4.11	3105	204	6	0	0	0	1593	logfile
✔	6X0V	21985	2023-02-16	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.49	0.0	0.04	12.98	0.00	2.224	17.83	0.00	5.0	95.0	0.0	2.29	1.20	0.40	0.76	—	1384	211	4	0	0	0	62	logfile
✔	7USB	26731	2023-02-16	2022-04-23	3.1	3.28	3.18	3.3	0.012	1.70	0.0	0.11	10.61	0.01	2.590	1.61	1.39	5.5	94.5	0.0	-0.28	0.59	0.76	5.40	3.3	0.007	0.80	0.0	0.05	13.30	0.00	2.421	5.78	0.00	6.5	93.5	0.0	-1.76	1.34	0.61	0.84	5.47	1661	213	3	0	5	0	0	logfile
✔	7QL1	14060	2023-02-16	2021-12-19	3.34	3.41	3.13	3.4	0.011	2.01	0.0	0.10	11.06	0.01	2.654	0.29	0.00	7.5	92.5	0.0	-3.09	0.42	0.83	4.57	3.4	0.007	0.85	0.0	0.05	15.42	0.00	2.104	12.32	0.00	4.2	95.8	0.0	-2.34	1.74	0.39	0.81	4.21	1671	219	3	0	0	0	0	logfile
✔	8BG9	16027	2023-02-16	2022-10-27	3.5	3.74	2.80	4.2	0.008	1.46	0.0	0.09	14.96	0.01	2.484	12.17	12.50	17.1	80.0	2.9	-5.16	0.38	0.79	4.51	4.0	0.006	0.76	0.0	0.05	15.60	0.00	2.264	7.60	0.00	10.5	89.5	0.0	-4.03	0.99	0.39	0.81	5.60	1692	222	6	0	0	0	0	logfile
✔	7F29	31428	2023-02-16	2021-06-10	3.1	3.08	—	3.2	0.012	0.91	0.0	0.06	15.08	0.00	2.305	11.93	0.00	14.3	85.7	0.0	-3.96	0.42	0.83	5.02	3.2	0.004	0.69	0.0	0.05	16.53	0.00	2.377	5.96	0.00	12.9	87.1	0.0	-2.14	0.33	0.43	0.85	4.75	1794	222	18	0	18	0	0	logfile
✔	7QKK	14045	2023-02-17	2021-12-17	2.8	2.31	2.82	3.2	0.012	2.17	4.0	0.12	13.17	0.02	2.483	1.41	0.00	9.5	90.5	0.0	-3.44	0.37	0.77	4.39	3.2	0.003	0.67	0.0	0.05	17.21	0.00	2.149	11.32	1.01	7.7	92.3	0.0	-3.49	2.18	0.34	0.79	3.16	3537	228	3	0	0	0	1803	logfile
✔	7M61	23686	2023-02-16	2021-03-25	3.8	3.83	—	4.1	0.005	1.01	0.0	0.08	12.79	0.00	2.218	22.02	0.00	14.3	85.7	0.0	-4.63	0.49	0.73	2.45	3.9	0.004	0.80	0.0	0.05	14.85	0.00	2.106	21.09	0.00	14.3	85.7	0.0	-4.66	0.84	0.48	0.75	2.97	1690	230	10	0	10	0	0	logfile
✔	6XTB	10618	2023-02-16	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.005	1.12	0.0	0.05	9.13	0.00	2.119	10.22	0.00	25.1	74.9	0.0	-5.72	2.48	0.34	0.65	—	1161	235	1	0	0	0	0	logfile
✔	6VW2	21410	2023-02-16	2020-02-18	3.4	3.62	—	3.8	0.006	1.13	0.0	0.06	14.20	0.01	2.292	24.13	0.00	27.3	72.7	0.0	-4.46	0.42	0.71	2.71	3.9	0.004	0.83	0.0	0.05	14.71	0.00	2.227	13.08	0.00	15.5	84.5	0.0	-4.88	0.43	0.39	0.70	1.67	1800	240	10	0	0	0	0	logfile
✔	7V4A	31705	2023-02-16	2021-08-12	3.2	3.19	—	3.3	0.002	0.52	0.0	0.05	14.28	0.00	2.423	8.54	0.00	7.9	92.1	0.0	-5.80	0.42	0.82	3.23	3.2	0.003	0.60	0.0	0.05	16.38	0.00	2.347	6.77	0.61	11.8	88.2	0.0	-3.97	1.70	0.42	0.81	3.13	1653	240	3	0	0	0	0	logfile
✔	7V22	31634	2023-02-16	2021-08-07	3.38	3.61	—	3.6	0.003	0.66	0.0	0.04	14.10	0.00	2.236	8.81	0.46	12.1	87.5	0.4	-2.81	0.53	0.77	4.24	3.6	0.004	0.70	0.0	0.05	16.03	0.00	2.170	11.14	0.46	13.4	86.2	0.4	-2.46	0.55	0.53	0.80	3.78	1958	240	1	0	0	0	0	logfile
✔	7RSQ	24677	2023-02-17	2021-08-11	3.8	4.03	3.73	4.1	0.008	0.80	0.0	0.05	12.74	0.00	2.360	4.01	2.88	3.0	97.0	0.0	-0.64	0.63	0.68	1.39	4.1	0.003	0.53	0.0	0.03	15.41	0.00	2.381	3.76	0.48	3.0	97.0	0.0	2.46	1.83	0.64	0.71	1.77	3970	246	1	0	0	0	1958	logfile
✔	7JZU	22574	2023-02-16	2020-09-02	3.1	3.26	3.10	3.3	0.015	1.33	0.0	0.08	9.63	0.01	2.509	0.78	0.00	3.3	96.7	0.0	0.23	0.69	0.76	4.15	3.3	0.002	0.55	0.0	0.04	14.20	0.00	2.251	5.70	0.00	1.6	98.4	0.0	0.79	1.62	0.71	0.79	3.98	1987	248	3	0	3	0	0	logfile
✔	8DM2	27524	2023-02-16	2022-07-08	2.91	3.71	2.85	3.6	0.007	0.99	0.0	0.07	12.79	0.01	2.362	4.12	0.44	2.5	97.5	0.0	-0.51	0.57	0.66	2.14	3.6	0.004	0.72	0.0	0.05	16.06	0.00	2.272	9.45	2.22	4.6	95.4	0.0	-0.98	1.12	0.61	0.74	3.53	2104	249	3	0	6	0	0	logfile
✔	7QKF	14040	2023-02-17	2021-12-17	2.83	2.46	2.72	2.8	0.012	2.23	2.0	0.21	13.42	0.01	2.598	0.26	0.00	8.4	91.6	0.0	-2.72	0.40	0.79	6.57	2.8	0.004	1.05	0.0	0.25	17.49	0.00	2.418	5.03	2.31	3.4	96.6	0.0	-3.42	1.39	0.40	0.86	6.09	3783	249	6	0	0	0	1926	logfile
✔	7M64	23688	2023-02-16	2021-03-25	4.0	4.02	—	4.3	0.008	1.15	0.0	0.07	10.07	0.00	2.451	19.77	0.00	8.7	91.3	0.0	-3.84	0.52	0.75	—	4.3	0.003	0.87	0.0	0.04	11.23	0.00	2.241	5.93	0.00	5.2	94.8	0.0	-3.94	1.14	0.51	0.74	—	1850	250	10	0	10	0	0	logfile
✔	7ZiR	14738	2023-02-16	2022-04-08	2.5	2.51	2.04	2.7	0.002	0.34	0.0	0.03	9.02	0.00	2.317	1.65	0.00	2.0	98.0	0.0	-3.82	0.48	0.90	7.46	2.7	0.003	0.46	0.0	0.04	12.12	0.00	2.316	0.28	0.00	2.9	97.1	0.0	-3.83	1.03	0.50	0.93	7.96	2120	255	10	0	0	50	0	logfile
✔	7YKW	33897	2023-02-16	2022-07-25	3.6	4.09	3.10	4.0	0.012	1.76	0.0	0.09	11.87	0.00	2.538	10.73	0.00	3.9	96.1	0.0	-3.01	0.63	0.78	4.01	4.0	0.004	0.71	0.0	0.04	13.95	0.00	2.258	9.90	0.00	0.4	99.6	0.0	-4.70	1.53	0.63	0.76	4.18	1908	256	8	0	0	0	0	logfile

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