Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7BC5	12139	2023-07-03	2020-12-18	3.1	3.06	3.11	3.1	0.005	1.05	0.0	0.05	15.92	0.01	2.314	7.83	0.76	8.2	91.8	0.0	-5.64	0.23	0.62	0.92	3.0	0.003	0.72	0.0	0.04	17.04	0.00	2.243	14.42	0.76	7.5	92.5	0.0	-2.75	1.30	0.23	0.58	0.92	1200	161	1	0	0	0	0	logfile
✔	8EX9	28655	2023-07-03	2022-10-25	2.96	3.27	3.00	3.2	0.003	0.49	0.0	0.03	17.73	0.00	2.200	13.65	0.79	4.3	95.7	0.0	-1.52	0.60	0.71	4.83	3.2	0.004	0.59	0.0	0.03	18.38	0.00	2.138	14.51	3.17	4.9	95.1	0.0	-0.86	0.26	0.60	0.72	4.45	4199	166	4	139	0	0	0	logfile
✔	3JBS	6478	2023-07-03	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.003	0.61	0.0	0.04	18.11	0.00	2.225	5.17	3.95	1.7	98.3	0.0	0.99	1.75	0.21	0.81	3.63	1401	175	1	0	0	0	0	logfile
✔	7W3T	32293	2023-07-03	2021-11-26	3.59	2.49	3.54	2.2	0.004	0.73	0.0	0.05	14.39	0.01	2.259	8.96	0.00	4.6	95.4	0.0	-2.83	0.76	0.75	4.00	2.2	0.003	0.64	0.0	0.05	16.79	0.00	2.191	11.71	0.62	4.6	95.4	0.0	-2.89	0.34	0.77	0.75	3.46	1455	176	3	0	7	0	0	logfile
✔	6R23	4708	2023-07-03	2019-03-15	4.9	4.57	—	4.6	0.006	1.07	0.0	0.05	16.56	0.01	2.332	7.52	0.00	7.9	92.1	0.0	-4.61	0.60	0.75	—	4.6	0.003	0.61	0.0	0.04	16.41	0.00	2.466	11.77	0.00	9.0	91.0	0.0	-0.07	3.42	0.60	0.74	—	1518	182	2	0	0	0	0	logfile
✔	6RiU	4898	2023-07-03	2019-04-25	3.9	6.21	2.04	7.0	0.008	1.19	0.0	0.09	15.19	0.01	2.182	5.20	0.00	8.4	91.6	0.0	-5.77	0.59	0.69	0.56	7.1	0.002	0.64	0.0	0.03	15.97	0.00	2.064	12.47	0.00	3.9	96.1	0.0	-0.16	1.43	0.61	0.75	0.76	2882	182	2	0	0	0	1430	logfile
✔	6C4H	7340	2023-07-07	2018-01-12	3.1	3.33	—	3.3	0.011	1.20	1.0	0.11	16.63	0.05	1.913	7.67	6.80	5.3	94.7	0.0	-2.61	0.43	0.85	3.61	3.3	0.008	0.92	0.0	0.04	15.55	0.01	1.783	7.67	1.36	5.8	94.2	0.0	-2.30	0.39	0.39	0.85	4.75	15326	184	8	648	34	0	0	logfile
✔	7TPK	26058	2023-07-03	2022-01-25	3.4	3.41	—	3.4	0.011	1.40	1.0	0.08	9.69	0.01	2.528	2.12	0.00	4.7	95.3	0.0	-0.98	0.60	0.72	4.39	3.4	0.004	0.63	0.0	0.04	15.27	0.00	2.331	4.95	0.00	4.2	95.8	0.0	-1.45	1.26	0.65	0.81	3.26	1484	194	1	0	1	0	0	logfile
✔	6X0V	21985	2023-07-03	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.49	0.0	0.04	12.98	0.00	2.224	17.83	0.00	5.0	95.0	0.0	2.29	1.20	0.40	0.76	—	1384	211	4	0	0	0	62	logfile
✔	7USB	26731	2023-07-03	2022-04-23	3.1	3.28	3.18	3.3	0.013	1.72	0.0	0.11	10.69	0.01	2.590	1.61	1.39	5.5	94.5	0.0	-0.28	0.59	0.76	5.40	3.3	0.005	0.80	0.0	0.05	13.73	0.00	2.361	5.78	0.69	5.5	94.5	0.0	-1.74	0.61	0.61	0.84	5.05	1661	213	3	0	5	0	0	logfile
✔	7YR6	34047	2023-07-03	2022-08-09	4.8	5.13	4.65	4.7	0.004	0.88	0.0	0.05	20.67	0.00	2.291	7.11	3.30	15.1	84.9	0.0	-5.39	0.81	0.74	—	4.7	0.006	0.85	0.0	0.05	21.69	0.01	2.063	46.62	0.00	26.4	73.6	0.0	-5.22	0.82	0.83	0.81	—	4248	220	5	118	0	0	0	logfile
✘	8SL0	40570	2023-07-03	2023-04-20	3.3	4.17	3.09	3.8	0.003	0.62	0.0	0.05	16.00	0.00	2.201	7.96	0.00	8.4	91.2	0.4	-1.67	0.42	0.83	1.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1737	228	1	0	0	0	0	logfile
✔	6XTB	10618	2023-07-03	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.005	1.12	0.0	0.05	9.13	0.00	2.119	10.22	0.00	25.1	74.9	0.0	-5.72	2.48	0.34	0.65	—	1161	235	1	0	0	0	0	logfile
✔	7V22	31634	2023-07-03	2021-08-07	3.38	3.61	—	3.6	0.003	0.66	0.0	0.04	14.10	0.00	2.236	8.81	0.46	12.1	87.5	0.4	-2.81	0.53	0.77	4.24	3.6	0.004	0.70	0.0	0.05	16.03	0.00	2.170	11.14	0.46	13.4	86.2	0.4	-2.46	0.55	0.53	0.80	3.78	1958	240	1	0	0	0	0	logfile
✔	7RSQ	24677	2023-07-03	2021-08-11	3.8	4.03	3.73	4.1	0.008	0.80	0.0	0.05	12.74	0.00	2.360	4.01	2.88	3.0	97.0	0.0	-0.64	0.63	0.68	1.39	4.1	0.003	0.53	0.0	0.03	15.41	0.00	2.381	3.76	0.48	3.0	97.0	0.0	2.46	1.83	0.64	0.71	1.77	3970	246	1	0	0	0	1958	logfile
✔	7JZU	22574	2023-07-03	2020-09-02	3.1	3.26	3.10	3.3	0.015	1.34	0.0	0.08	9.69	0.01	2.509	0.78	0.00	3.3	96.7	0.0	0.23	0.69	0.76	4.15	3.3	0.003	0.63	0.0	0.04	15.06	0.00	2.208	5.19	0.98	3.3	96.7	0.0	0.42	1.61	0.69	0.80	3.94	1987	248	3	0	3	0	0	logfile
✔	8DM2	27524	2023-07-03	2022-07-08	2.91	3.71	2.85	3.6	0.007	1.02	0.0	0.07	12.99	0.01	2.362	4.12	0.44	2.5	97.5	0.0	-0.51	0.57	0.66	2.14	3.6	0.003	0.70	0.0	0.05	16.70	0.00	2.278	8.96	1.78	5.0	95.0	0.0	-0.88	1.72	0.61	0.74	3.47	2104	249	3	0	6	0	0	logfile
✔	7SRQ	25401	2023-07-03	2021-11-08	2.7	2.17	—	1.9	0.008	0.80	0.0	0.05	13.54	0.01	2.296	8.67	1.50	2.8	97.2	0.0	0.29	0.70	0.72	4.55	2.7	0.004	0.76	0.0	0.04	15.44	0.00	2.264	8.93	3.50	3.2	96.8	0.0	0.20	0.48	0.72	0.77	3.78	1960	254	1	0	2	0	0	logfile
✔	6ZS5	11388	2023-07-03	2020-07-15	3.5	4.02	3.66	3.8	0.008	1.09	1.0	0.07	13.95	0.01	2.202	4.52	0.00	4.7	95.3	0.0	-2.98	0.67	0.80	2.81	3.9	0.003	0.75	0.0	0.04	15.47	0.00	2.220	9.30	1.86	3.6	96.4	0.0	-1.97	2.35	0.67	0.80	2.50	2036	257	4	0	7	0	0	logfile
✔	7JZM	22533	2023-07-03	2020-09-02	3.5	3.74	3.50	3.7	0.015	1.38	0.0	0.08	9.29	0.01	2.420	1.01	0.00	2.0	98.0	0.0	0.75	0.75	0.78	4.01	3.7	0.003	0.72	0.0	0.04	14.65	0.00	2.187	9.13	0.00	3.9	96.1	0.0	0.33	1.25	0.76	0.80	3.36	2033	258	3	0	3	0	0	logfile

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