Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TL1	25983	2023-02-25	2022-01-18	3.5	3.79	3.47	3.6	0.003	0.66	0.0	0.05	11.12	0.01	2.302	3.28	0.00	3.6	96.4	0.0	-0.64	0.85	0.83	2.56	3.6	0.003	0.50	0.0	0.04	12.47	0.00	2.149	6.60	0.04	3.5	96.5	0.0	0.42	0.28	0.85	0.84	2.45	25109	3138	11	0	38	0	0	logfile
✔	7RWC	24714	2023-02-20	2021-08-19	3.8	4.08	3.75	4.0	0.004	0.60	0.0	0.04	12.87	0.00	2.175	8.83	0.09	5.6	94.4	0.1	0.33	0.71	0.72	1.25	4.1	0.003	0.57	0.0	0.04	14.56	0.00	2.277	8.57	0.56	4.7	95.3	0.1	0.56	0.34	0.75	0.77	1.03	12110	1705	5	0	8	0	0	logfile
✔	6C04	7320	2023-02-26	2017-12-27	3.27	3.62	—	3.6	0.011	1.13	20.0	0.07	18.98	0.01	1.850	9.34	14.33	8.0	91.6	0.5	-4.23	0.80	0.86	2.08	3.6	0.003	0.63	0.0	0.04	18.20	0.01	2.045	7.29	0.21	5.0	94.9	0.1	-0.33	1.26	0.82	0.88	1.79	27982	3351	12	97	3	0	0	logfile
✔	7RKX	24506	2023-02-18	2021-07-22	3.1	3.43	3.11	3.4	0.005	0.71	0.0	0.05	12.43	0.01	2.137	4.07	0.00	3.9	96.1	0.0	-0.60	0.72	0.88	4.25	3.4	0.004	0.63	0.0	0.04	14.55	0.00	2.127	4.73	0.45	3.3	96.6	0.1	0.46	0.34	0.67	0.88	3.23	8559	1126	5	0	0	0	0	logfile
✔	7ZJ8	14744	2023-02-20	2022-04-08	3.1	2.96	3.14	3.1	0.014	1.84	0.0	0.10	14.69	0.02	1.471	1.49	0.23	5.3	94.7	0.0	-2.59	0.80	0.87	3.61	3.1	0.003	0.56	0.0	0.04	15.22	0.00	2.177	3.01	0.00	1.9	98.1	0.0	0.40	0.53	0.81	0.86	3.15	12342	1482	18	0	51	0	0	logfile
✔	6CNN	7538	2023-02-21	2018-03-08	3.5	3.63	—	3.6	0.008	1.00	0.0	0.05	10.13	0.01	2.016	1.24	0.00	4.0	96.0	0.0	-4.29	0.66	0.83	2.52	3.6	0.005	0.66	0.0	0.04	15.29	0.00	2.162	5.17	0.40	3.1	96.9	0.0	1.85	0.74	0.67	0.84	1.97	15740	2024	16	0	28	0	0	logfile
✔	6Y50	10688	2023-02-21	2020-02-24	4.1	4.22	—	4.0	0.003	0.52	0.0	0.04	6.93	0.00	0.761	13.95	0.00	5.9	93.9	0.2	-3.48	0.68	0.68	—	4.0	0.003	0.63	0.0	0.04	9.28	0.00	2.033	7.63	0.00	11.1	88.8	0.1	-1.16	0.53	0.72	0.73	—	14916	2537	10	50	3	0	0	logfile
✔	7ooA	13008	2023-02-21	2021-05-27	2.7	2.63	2.63	2.6	0.006	0.73	0.0	0.05	15.29	0.00	2.256	5.81	0.00	0.4	99.6	0.0	2.71	0.71	0.86	4.30	2.6	0.002	0.46	0.0	0.04	16.97	0.00	2.218	5.87	1.01	1.2	98.8	0.0	1.72	1.12	0.70	0.88	3.92	15610	1834	14	0	35	0	0	logfile
✔	7WHP	32507	2023-02-22	2021-12-31	3.7	3.28	—	3.3	0.004	0.62	0.0	0.04	14.19	0.01	2.209	8.40	0.00	2.9	97.0	0.0	-0.85	0.30	0.77	2.67	3.3	0.004	0.60	0.0	0.05	16.37	0.00	2.068	9.96	0.37	4.2	95.7	0.0	-0.75	1.54	0.30	0.78	2.57	17038	2114	4	0	6	0	0	logfile
✔	6T2C	10368	2023-02-19	2019-10-08	3.52	3.61	3.52	3.6	0.008	0.76	0.0	0.05	14.31	0.01	2.097	4.19	6.25	5.7	94.2	0.1	-3.65	0.69	0.85	2.89	3.6	0.003	0.54	0.0	0.04	15.82	0.00	1.970	7.32	0.18	3.1	96.9	0.0	0.34	0.63	0.69	0.84	2.66	10700	1255	5	29	1	0	0	logfile
✔	8F7R	28908	2023-02-20	2022-11-20	3.28	2.92	3.26	3.4	0.004	0.84	0.0	0.07	7.82	0.01	2.260	4.20	0.00	1.5	98.5	0.0	-0.71	0.54	0.70	1.83	3.3	0.003	0.56	0.0	0.04	14.02	0.00	2.165	11.40	0.24	1.3	98.7	0.0	1.41	0.81	0.57	0.79	2.34	11697	1443	11	0	12	0	0	logfile
✔	6PiF	20349	2023-02-26	2019-06-26	3.4	3.57	3.44	3.5	0.014	1.74	2.0	0.09	16.21	0.00	1.256	6.99	2.17	14.8	81.3	3.9	-4.83	0.64	0.76	2.73	3.5	0.003	0.84	1.0	0.04	16.97	0.00	2.121	11.67	0.49	15.1	84.4	0.5	-2.75	1.58	0.72	0.85	2.23	28954	3448	11	60	0	0	0	logfile
✔	7TEi	25846	2023-02-25	2022-01-05	3.4	3.66	3.40	3.5	0.004	0.66	0.0	0.05	12.87	0.01	2.268	2.65	0.00	3.5	96.5	0.0	-0.99	0.84	0.84	2.83	3.5	0.005	0.55	0.0	0.05	13.68	0.00	2.165	4.96	0.11	3.7	96.3	0.0	0.24	1.11	0.87	0.89	2.52	25420	3044	39	0	116	0	0	logfile
✔	7TP1	26045	2023-02-25	2022-01-24	3.81	4.30	—	3.8	0.013	1.74	5.0	0.10	13.54	0.01	2.523	0.21	1.39	6.7	92.4	0.9	-1.32	0.85	0.84	1.81	3.8	0.003	0.61	0.0	0.04	14.00	0.00	2.063	7.57	0.19	5.0	94.9	0.1	0.17	0.51	0.86	0.84	1.56	24646	3046	20	0	61	0	0	logfile
✔	6W7W	21573	2023-02-25	2020-03-19	3.9	4.46	—	4.0	0.002	0.49	0.0	0.03	15.50	0.00	2.156	10.70	0.12	4.1	95.9	0.0	-2.82	0.91	0.83	1.20	4.0	0.007	0.81	0.0	0.04	16.92	0.01	2.076	28.38	0.82	8.8	91.1	0.1	-1.64	0.59	0.92	0.85	1.38	26883	1047	10	871	0	0	0	logfile
✔	7SL2	25189	2023-02-22	2021-10-22	3.6	3.89	—	3.5	0.003	0.56	0.0	0.04	13.63	0.00	2.147	11.07	0.18	7.0	92.7	0.2	-0.82	0.81	0.82	2.07	3.4	0.004	0.60	0.0	0.04	15.02	0.00	2.095	12.34	0.25	7.3	92.7	0.0	-1.01	1.14	0.82	0.83	1.88	14477	1796	10	0	0	0	0	logfile
✔	6VLR	21232	2023-02-24	2020-01-24	4.42	4.62	4.43	4.4	0.021	1.74	0.0	0.10	10.31	0.01	2.046	1.26	0.13	2.6	97.2	0.2	1.05	0.72	0.80	—	4.4	0.003	0.66	0.0	0.04	12.21	0.00	2.121	11.56	0.00	4.1	95.8	0.1	0.72	2.72	0.72	0.83	—	21768	2611	37	0	92	0	0	logfile
✘	7K9X	22755	2023-02-19	2020-09-29	3.8	3.44	—	3.7	0.008	0.96	0.0	0.05	15.20	0.01	2.254	6.36	6.12	3.8	96.2	0.0	-1.99	0.79	0.81	0.97	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10472	1372	4	0	0	0	0	logfile
✔	7VNM	32042	2023-02-23	2021-10-11	2.86	2.50	—	2.7	0.021	1.93	0.0	0.04	16.38	0.05	2.100	8.50	0.34	1.5	98.5	0.0	2.54	0.63	0.86	4.06	2.6	0.003	0.70	0.0	0.04	17.03	0.00	2.100	7.30	1.36	1.4	98.6	0.0	2.62	0.94	0.62	0.88	3.98	20588	2112	55	0	65	0	0	logfile
✔	8DNM	27574	2023-02-21	2022-07-11	2.76	3.58	2.88	3.4	0.006	0.85	4.0	0.05	12.93	0.01	2.217	8.35	0.86	3.6	96.4	0.0	-1.12	0.83	0.80	3.99	3.4	0.004	0.55	0.0	0.04	14.81	0.00	2.229	5.95	0.56	2.8	97.2	0.0	0.78	0.56	0.83	0.87	3.19	14880	1932	4	0	0	0	0	logfile

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