Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PEW	13359	2023-07-07	2021-08-11	4.6	5.68	—	4.1	0.006	0.91	0.0	0.05	30.24	0.01	2.249	5.53	0.00	1.1	98.9	0.0	-0.20	0.89	0.85	—	4.0	0.004	0.66	0.0	0.04	29.62	0.00	2.156	17.10	0.00	1.9	98.1	0.0	1.13	1.61	0.89	0.85	—	13304	768	10	352	0	0	0	logfile
✔	8CYA	27072	2023-07-05	2022-05-23	2.7	3.50	2.73	3.0	0.003	0.56	0.0	0.05	11.67	0.00	1.935	6.76	0.06	4.8	95.0	0.2	0.52	0.83	0.75	1.85	3.1	0.005	0.55	0.0	0.04	12.83	0.00	2.004	10.58	0.47	5.7	94.2	0.1	-0.07	0.40	0.85	0.80	2.12	57833	3681	29	0	88	0	27935	logfile
✔	8B70	15894	2023-07-05	2022-09-28	3.3	2.85	3.11	3.3	0.011	1.45	0.0	0.06	15.75	0.00	2.148	8.20	0.84	4.8	95.2	0.0	1.55	0.40	0.68	1.87	3.2	0.003	0.76	0.0	0.04	16.60	0.00	2.223	7.47	0.00	3.9	96.1	0.0	1.50	0.93	0.61	0.86	1.56	9258	1144	4	0	12	0	0	logfile
✔	8FHT	29103	2023-07-04	2022-12-15	3.02	3.34	3.05	3.2	0.004	0.63	3.0	0.05	12.98	0.00	2.220	6.63	0.96	1.8	98.2	0.0	2.06	0.60	0.80	2.43	3.3	0.003	0.50	0.0	0.04	14.20	0.00	2.169	6.85	0.41	2.3	97.7	0.0	2.48	0.39	0.57	0.80	2.13	7006	936	4	0	4	0	0	logfile
✔	7FFE	31566	2023-07-15	2021-07-23	3.5	3.89	—	3.9	0.007	0.93	0.0	0.06	9.40	0.01	2.211	4.93	0.28	6.6	93.3	0.1	-3.34	0.51	0.79	2.77	3.8	0.004	0.70	0.0	0.04	14.15	0.00	2.030	9.94	0.22	5.8	94.2	0.1	-0.74	2.44	0.51	0.83	2.42	33063	4275	16	0	0	0	0	logfile
✔	8iGS	35439	2023-07-11	2023-02-21	3.4	3.65	3.25	3.4	0.003	0.59	0.0	0.04	19.27	0.00	1.981	5.07	1.04	5.5	94.5	0.0	0.31	0.80	0.87	1.89	3.4	0.003	0.58	0.0	0.04	19.32	0.00	2.070	7.76	0.32	4.7	95.3	0.0	0.73	0.47	0.80	0.87	1.86	24481	2925	8	73	3	0	0	logfile
✔	8EYX	28723	2023-07-10	2022-10-29	4.5	4.99	4.61	4.1	0.006	0.76	1.0	0.05	12.87	0.00	1.857	33.88	1.18	9.7	89.7	0.6	-1.73	0.86	0.74	—	4.1	0.004	0.68	0.0	0.04	12.85	0.00	2.136	23.75	0.06	9.1	90.7	0.2	-1.42	1.18	0.89	0.83	—	14298	1773	6	0	0	0	0	logfile
✔	5WFE	8827	2023-07-07	2017-07-11	3.64	4.04	—	3.8	0.004	0.66	0.0	0.04	22.67	0.00	1.891	14.85	0.09	4.6	95.3	0.1	-1.79	0.80	0.67	1.90	3.8	0.004	0.75	0.0	0.04	24.02	0.00	2.068	17.06	0.60	4.2	95.8	0.0	0.36	2.54	0.84	0.75	1.62	15523	1447	12	210	0	0	0	logfile
✔	7STi	25429	2023-07-08	2021-11-13	4.9	6.34	—	4.3	0.004	0.67	0.0	0.04	13.50	0.00	2.001	25.75	0.20	7.8	92.0	0.2	-1.35	0.89	0.83	—	4.3	0.004	0.65	0.0	0.04	13.42	0.00	2.110	26.65	0.00	9.2	90.6	0.2	-1.29	1.61	0.89	0.84	—	13531	1678	3	0	0	0	0	logfile
✔	7RNN	24580	2023-07-03	2021-07-29	2.86	2.05	—	3.2	0.008	0.80	0.0	0.14	13.56	0.00	1.929	6.74	0.55	3.4	96.6	0.0	-1.11	0.50	0.76	5.00	3.2	0.004	0.64	0.0	0.04	15.50	0.00	2.212	6.34	1.09	1.9	98.1	0.0	0.60	0.97	0.49	0.87	4.03	4000	540	2	0	2	0	0	logfile
✔	7PR1	13607	2023-07-05	2021-09-20	2.81	3.22	2.90	3.1	0.007	0.95	0.0	0.05	14.13	0.00	2.053	7.90	0.00	2.1	97.9	0.0	-0.18	0.63	0.83	3.36	3.1	0.003	0.58	0.0	0.04	16.59	0.00	2.171	9.35	2.37	2.3	97.7	0.0	1.86	0.94	0.57	0.80	2.97	9222	1174	4	0	4	0	0	logfile
✔	7XGR	33187	2023-07-04	2022-04-06	2.6	3.38	2.47	3.2	0.004	0.71	0.0	0.04	18.88	0.00	2.259	8.70	2.17	6.3	93.7	0.0	-0.28	0.52	0.75	2.35	3.2	0.002	0.61	0.0	0.03	19.07	0.00	2.203	7.19	1.96	5.8	94.2	0.0	2.24	1.25	0.55	0.83	2.09	4340	546	1	0	0	0	0	logfile
✔	8E4o	27894	2023-07-03	2022-08-18	3.43	3.87	3.39	3.6	0.002	0.44	0.0	0.03	11.67	0.01	2.257	5.45	0.45	1.8	98.2	0.0	2.99	0.68	0.73	2.38	3.7	0.003	0.66	0.0	0.03	13.35	0.00	2.024	6.81	0.19	3.0	97.0	0.0	2.90	0.72	0.72	0.80	1.84	53496	3588	8	0	4	0	26024	logfile
✘	3JAF	6346	2023-07-07	2015-06-08	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13865	1710	15	0	15	0	0	logfile
✔	7PFE	13373	2023-07-08	2021-08-11	4.4	5.35	—	3.9	0.007	0.94	0.0	0.05	29.84	0.01	2.264	6.87	0.00	1.5	98.5	0.0	-0.43	0.91	0.85	—	3.9	0.004	0.67	0.0	0.04	29.59	0.00	2.112	17.93	0.00	2.9	97.1	0.0	0.87	1.61	0.91	0.85	—	13880	843	11	354	0	0	0	logfile
✔	7XH8	33191	2023-07-03	2022-04-07	2.99	3.75	3.32	3.6	0.014	1.81	0.0	0.09	13.61	0.03	2.472	0.80	0.88	3.5	95.5	1.0	-1.88	0.61	0.58	1.19	3.3	0.003	0.85	0.0	0.04	15.31	0.00	2.111	19.43	4.09	6.0	94.0	0.0	-0.67	1.99	0.67	0.74	1.39	3161	404	3	0	0	0	0	logfile
✔	7T22	25609	2023-07-11	2021-12-02	4.2	4.73	—	4.4	0.004	1.41	0.0	0.04	10.32	0.00	1.992	5.52	1.18	1.5	98.5	0.0	2.51	0.83	0.75	—	4.4	0.004	1.08	0.0	0.04	12.24	0.00	0.943	23.53	0.00	3.4	96.6	0.0	0.80	0.90	0.85	0.79	—	24536	3084	15	13	15	0	0	logfile
✔	7D7R	30610	2023-07-04	2020-10-05	4.0	4.04	—	4.0	0.004	0.96	0.0	0.05	14.87	0.01	2.270	5.25	0.36	3.6	96.2	0.2	-3.66	0.51	0.58	—	3.9	0.003	0.85	0.0	0.04	15.86	0.00	2.198	16.53	0.91	3.4	96.6	0.0	0.50	1.32	0.50	0.58	—	7680	1160	2	0	0	0	0	logfile
✔	8BEW	16011	2023-07-10	2022-10-22	3.49	3.73	3.58	3.7	0.003	0.74	0.0	0.05	14.61	0.00	2.171	4.97	0.09	4.1	95.7	0.2	-1.10	0.73	0.74	1.44	3.7	0.003	0.62	0.0	0.04	16.31	0.00	2.082	8.27	0.22	4.3	95.6	0.1	-0.35	0.47	0.73	0.84	1.19	21004	2704	12	0	24	0	0	logfile
✔	7PBD	13290	2023-07-08	2021-08-02	3.04	3.81	3.11	3.5	0.005	0.76	0.0	0.10	13.11	0.00	2.062	4.44	0.00	3.8	96.2	0.0	0.14	0.77	0.82	3.43	3.4	0.004	0.63	0.0	0.04	14.23	0.00	2.179	6.81	0.32	3.1	96.8	0.1	0.95	1.14	0.78	0.85	2.91	14822	1784	15	0	25	0	0	logfile

• ← previous
• Page 4 of 500
• next →