The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 3JAJ | 3037 | 2022-04-24 | 2015-06-16 | 3.75 | 3.82 | 3.77 | 3.8 | 0.013 | 1.90 | 339.0 | 0.13 | 23.43 | 0.02 | 0.312 | 55.51 | 20.83 | 14.7 | 79.8 | 5.5 | -5.44 | 0.74 | 0.80 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 228197 | 12521 | 100 | 5958 | 193 | 0 | 0 | logfile |
✔ | 3JAK | 6349 | 2022-04-09 | 2015-06-16 | 3.3 | 3.49 | — | 3.6 | 0.009 | 1.40 | 0.0 | 0.08 | 15.62 | 0.01 | 2.010 | 2.26 | 1.12 | 2.2 | 97.7 | 0.1 | 0.27 | 0.64 | 0.85 | 2.90 | 3.5 | 0.003 | 0.60 | 0.0 | 0.04 | 16.63 | 0.00 | 1.918 | 6.05 | 0.26 | 2.0 | 98.0 | 0.0 | 0.96 | 0.73 | 0.61 | 0.87 | 2.62 | 43066 | 5428 | 26 | 0 | 18 | 0 | 0 | logfile |
✔ | 3JAL | 6350 | 2022-04-09 | 2015-06-16 | 3.5 | 3.70 | — | 3.6 | 0.009 | 1.46 | 5.0 | 0.08 | 15.76 | 0.01 | 1.948 | 1.62 | 1.21 | 2.9 | 97.0 | 0.1 | 0.16 | 0.68 | 0.86 | 2.81 | 3.6 | 0.003 | 0.62 | 0.0 | 0.04 | 16.99 | 0.00 | 1.904 | 7.11 | 0.19 | 2.3 | 97.7 | 0.0 | 0.93 | 0.79 | 0.66 | 0.86 | 2.63 | 43012 | 5428 | 26 | 0 | 18 | 0 | 0 | logfile |
✔ | 3JAM | 3047 | 2022-04-07 | 2015-06-17 | 3.46 | 3.54 | 3.52 | 3.5 | 0.007 | 1.32 | 63.0 | 0.10 | 21.31 | 0.01 | 1.398 | 7.14 | 13.45 | 10.2 | 86.0 | 3.8 | -1.98 | 0.64 | 0.83 | 1.53 | 3.5 | 0.007 | 0.84 | 0.0 | 0.04 | 19.61 | 0.01 | 1.524 | 14.77 | 0.35 | 9.6 | 89.1 | 1.3 | -1.13 | 0.66 | 0.66 | 0.85 | 1.68 | 77850 | 5056 | 42 | 1780 | 83 | 0 | 0 | logfile |
✔ | 3JAP | 3048 | 2022-04-09 | 2015-06-18 | 4.9 | 5.03 | 5.08 | 5.0 | 0.007 | 1.39 | 79.0 | 0.11 | 22.42 | 0.01 | 1.307 | 9.46 | 13.17 | 10.9 | 85.8 | 3.4 | -1.68 | 0.68 | 0.69 | — | 4.9 | 0.004 | 0.80 | 0.0 | 0.04 | 19.12 | 0.01 | 1.219 | 25.09 | 0.03 | 10.0 | 89.2 | 0.8 | -1.85 | 2.20 | 0.72 | 0.80 | — | 98333 | 7272 | 53 | 1869 | 255 | 0 | 0 | logfile |
✔ | 3JAR | 6351 | 2022-04-09 | 2015-06-19 | 3.4 | 3.64 | — | 3.6 | 0.008 | 1.38 | 6.0 | 0.08 | 16.19 | 0.01 | 1.923 | 1.68 | 1.82 | 2.6 | 97.2 | 0.2 | 0.27 | 0.69 | 0.87 | 3.14 | 3.6 | 0.003 | 0.60 | 0.0 | 0.04 | 16.70 | 0.00 | 1.903 | 6.26 | 0.13 | 2.0 | 98.0 | 0.0 | 0.82 | 1.52 | 0.66 | 0.88 | 2.67 | 43024 | 5428 | 26 | 6 | 12 | 0 | 0 | logfile |
✔ | 3JAS | 6353 | 2022-04-09 | 2015-06-19 | 3.5 | 3.68 | — | 3.7 | 0.008 | 1.46 | 6.0 | 0.08 | 16.41 | 0.01 | 1.846 | 3.37 | 2.07 | 3.1 | 96.8 | 0.1 | 0.41 | 0.64 | 0.85 | 2.90 | 3.6 | 0.003 | 0.62 | 0.0 | 0.04 | 17.07 | 0.00 | 1.982 | 8.04 | 0.23 | 2.6 | 97.4 | 0.0 | 1.16 | 0.77 | 0.60 | 0.84 | 2.46 | 40506 | 5124 | 24 | 6 | 12 | 0 | 0 | logfile |
✔ | 3JAT | 6352 | 2022-04-09 | 2015-06-20 | 3.5 | 3.68 | — | 3.7 | 0.009 | 1.54 | 12.0 | 0.09 | 16.21 | 0.01 | 1.855 | 1.71 | 0.55 | 3.1 | 96.8 | 0.1 | 0.14 | 0.64 | 0.82 | 2.93 | 3.7 | 0.004 | 0.63 | 0.0 | 0.04 | 17.24 | 0.00 | 1.850 | 8.15 | 0.25 | 2.5 | 97.5 | 0.0 | 0.90 | 0.77 | 0.63 | 0.85 | 2.28 | 40500 | 5124 | 24 | 0 | 24 | 0 | 0 | logfile |
✔ | 3JAU | 6366 | 2022-04-05 | 2015-06-24 | 4.8 | 4.76 | — | 5.7 | 0.027 | 2.66 | 660.0 | 0.16 | 14.74 | 0.02 | 1.686 | 11.24 | 1.90 | 4.6 | 94.1 | 1.3 | -2.16 | 0.21 | 0.38 | — | 5.4 | 0.002 | 0.71 | 0.0 | 0.04 | 13.18 | 0.00 | 2.216 | 11.41 | 0.00 | 3.3 | 96.2 | 0.4 | -0.47 | 1.41 | 0.24 | 0.61 | — | 114900 | 14700 | 180 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JB6 | 6408 | 2022-04-05 | 2015-08-02 | 3.3 | 3.35 | — | 3.4 | 0.010 | 0.90 | 4.0 | 0.06 | 9.55 | 0.01 | 2.123 | 8.25 | 0.20 | 2.4 | 97.4 | 0.1 | -3.72 | 0.63 | 0.90 | 5.02 | 3.4 | 0.002 | 0.58 | 0.0 | 0.04 | 15.06 | 0.00 | 2.157 | 5.76 | 0.20 | 1.8 | 98.2 | 0.0 | 0.16 | 1.19 | 0.63 | 0.88 | 3.71 | 13904 | 1731 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 3JB7 | 6404 | 2022-04-05 | 2015-08-03 | 4.0 | 4.13 | — | 4.1 | 0.007 | 0.76 | 3.0 | 0.05 | 10.78 | 0.00 | 0.793 | 10.58 | 1.13 | 3.9 | 95.9 | 0.2 | -2.17 | 0.76 | 0.85 | — | 4.1 | 0.003 | 0.68 | 0.0 | 0.04 | 15.37 | 0.00 | 2.188 | 10.73 | 0.66 | 2.6 | 97.3 | 0.1 | 0.19 | 0.89 | 0.78 | 0.85 | — | 14176 | 1733 | 8 | 11 | 3 | 0 | 0 | logfile |
✔ | 3JB9 | 6413 | 2022-04-08 | 2015-08-09 | 3.6 | 3.70 | — | 3.6 | 0.010 | 1.29 | 13.0 | 0.07 | 16.84 | 0.01 | 1.253 | 18.04 | 8.06 | 9.1 | 87.9 | 3.0 | -3.97 | 0.52 | 0.51 | 1.26 | 3.6 | 0.007 | 0.90 | 2.0 | 0.04 | 17.16 | 0.01 | 1.525 | 16.04 | 0.17 | 6.3 | 93.0 | 0.8 | -1.24 | 0.93 | 0.56 | 0.64 | 1.07 | 86551 | 9194 | 50 | 328 | 1328 | 0 | 0 | logfile |
✔ | 3JBR | 6475 | 2022-04-05 | 2015-09-29 | 4.2 | 4.39 | — | 4.2 | 0.008 | 1.30 | 0.0 | 0.06 | 8.64 | 0.00 | 1.419 | 19.15 | 0.37 | 8.1 | 84.8 | 7.0 | -3.43 | 0.66 | 0.70 | — | 4.2 | 0.003 | 0.76 | 0.0 | 0.04 | 11.15 | 0.00 | 2.086 | 14.87 | 0.09 | 11.5 | 86.4 | 2.1 | -0.82 | 1.54 | 0.66 | 0.70 | — | 16467 | 2148 | 6 | 0 | 385 | 0 | 0 | logfile |
✔ | 3JBS | 6478 | 2022-04-04 | 2015-10-13 | 2.9 | 3.04 | — | 3.2 | 0.010 | 1.32 | 0.0 | 0.06 | 8.67 | 0.01 | 2.510 | 0.00 | 0.00 | 2.9 | 97.1 | 0.0 | 0.51 | 0.21 | 0.76 | 4.15 | 3.0 | 0.004 | 0.63 | 0.0 | 0.04 | 18.27 | 0.00 | 2.222 | 7.93 | 3.29 | 1.7 | 98.3 | 0.0 | 0.83 | 1.30 | 0.22 | 0.81 | 3.95 | 1401 | 175 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JBT | 6480 | 2022-04-06 | 2015-10-15 | 3.8 | 3.89 | — | 3.8 | 0.008 | 1.31 | 7.0 | 0.07 | 19.56 | 0.01 | 1.919 | 70.45 | 18.24 | 8.0 | 88.3 | 3.6 | -0.65 | 0.57 | 0.50 | 0.49 | 3.8 | 0.003 | 0.78 | 0.0 | 0.04 | 16.92 | 0.00 | 1.871 | 15.10 | 0.42 | 7.1 | 92.1 | 0.8 | -1.31 | 1.73 | 0.69 | 0.66 | 0.68 | 70252 | 8736 | 28 | 0 | 21 | 0 | 0 | logfile |
✔ | 3JBU | 6483 | 2022-04-09 | 2015-10-16 | 3.64 | 3.71 | — | 3.6 | 0.008 | 1.32 | 5.0 | 0.10 | 19.19 | 0.01 | 0.232 | 33.71 | 2.84 | 8.0 | 89.1 | 2.9 | -2.66 | 0.70 | 0.74 | 0.87 | 3.6 | 0.009 | 0.91 | 3.0 | 0.04 | 17.86 | 0.01 | 1.755 | 15.90 | 0.33 | 9.1 | 90.5 | 0.5 | -2.28 | 2.04 | 0.72 | 0.78 | 0.95 | 143334 | 5599 | 54 | 4638 | 0 | 0 | 0 | logfile |
✔ | 3JBV | 6486 | 2022-04-10 | 2015-10-16 | 3.32 | 3.40 | — | 3.3 | 0.007 | 1.32 | 4.0 | 0.10 | 19.58 | 0.01 | 0.389 | 31.38 | 3.04 | 8.1 | 88.9 | 3.0 | -2.71 | 0.67 | 0.78 | 1.48 | 3.3 | 0.008 | 0.87 | 2.0 | 0.04 | 18.03 | 0.01 | 1.836 | 15.02 | 0.36 | 9.4 | 90.0 | 0.6 | -2.20 | 1.56 | 0.69 | 0.80 | 1.50 | 145911 | 5734 | 57 | 4712 | 1 | 0 | 0 | logfile |
✔ | 3JBW | 6489 | 2022-04-09 | 2015-10-21 | 4.6 | 4.71 | — | 4.6 | 0.013 | 1.70 | 1.0 | 0.08 | 21.70 | 0.01 | 1.977 | 22.72 | 4.88 | 5.6 | 93.6 | 0.9 | -3.37 | 0.75 | 0.79 | — | 4.6 | 0.004 | 0.80 | 0.0 | 0.04 | 21.59 | 0.01 | 2.115 | 22.56 | 0.06 | 5.4 | 94.4 | 0.2 | -0.90 | 1.70 | 0.76 | 0.80 | — | 19997 | 1946 | 12 | 222 | 2 | 0 | 0 | logfile |
✔ | 3JBX | 6487 | 2022-04-08 | 2015-10-22 | 3.4 | 3.51 | — | 3.6 | 0.006 | 1.24 | 1.0 | 0.05 | 21.13 | 0.01 | 1.816 | 16.75 | 11.74 | 6.1 | 93.8 | 0.1 | -3.11 | 0.75 | 0.80 | 2.08 | 3.5 | 0.004 | 0.77 | 0.0 | 0.04 | 21.52 | 0.01 | 2.088 | 16.53 | 0.76 | 4.3 | 95.5 | 0.1 | -0.65 | 0.79 | 0.75 | 0.82 | 1.82 | 16670 | 1802 | 14 | 116 | 6 | 0 | 0 | logfile |
✔ | 3JBY | 6488 | 2022-04-08 | 2015-10-22 | 3.7 | 3.78 | — | 3.8 | 0.015 | 1.57 | 0.0 | 0.07 | 20.72 | 0.01 | 2.015 | 24.68 | 5.74 | 4.2 | 95.5 | 0.3 | -3.60 | 0.77 | 0.83 | 2.24 | 3.7 | 0.005 | 0.78 | 0.0 | 0.04 | 21.25 | 0.01 | 2.173 | 14.82 | 0.51 | 4.6 | 95.1 | 0.3 | -0.23 | 0.86 | 0.75 | 0.82 | 1.50 | 16846 | 1802 | 12 | 124 | 6 | 0 | 0 | logfile |