Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DPH	27635	2023-08-10	2022-07-15	3.2	2.17	3.15	2.0	0.005	0.59	0.0	0.05	9.34	0.00	2.162	2.82	0.73	1.4	98.6	0.0	1.66	0.76	0.73	2.48	2.1	0.003	0.62	0.0	0.04	14.05	0.00	2.202	5.07	0.24	2.8	97.2	0.0	1.06	1.06	0.78	0.77	2.24	8182	1093	6	0	3	0	0	logfile
✔	7SP9	25369	2023-08-10	2021-11-02	2.9	3.20	—	3.1	0.004	0.57	0.0	0.05	11.91	0.00	2.245	5.66	0.00	1.2	98.8	0.0	1.62	0.71	0.78	2.80	3.1	0.003	0.63	0.0	0.04	15.14	0.00	2.276	9.71	2.87	2.6	97.2	0.1	1.04	1.27	0.74	0.85	3.40	5966	737	3	0	2	0	0	logfile
✔	8B01	15775	2023-08-09	2022-09-06	3.03	3.65	3.02	3.5	0.004	0.60	0.0	0.04	13.05	0.00	2.217	2.82	0.53	2.9	97.1	0.0	2.16	0.67	0.82	2.94	3.5	0.003	0.53	0.0	0.04	14.65	0.00	2.223	3.70	0.35	1.8	98.2	0.0	1.95	0.44	0.71	0.86	2.82	5478	684	5	0	15	0	0	logfile
✔	6ZH5	11214	2023-08-22	2020-06-21	2.7	3.69	—	3.3	0.007	0.73	0.0	0.04	18.44	0.00	2.015	8.51	12.67	1.1	98.9	0.0	-2.77	0.85	0.86	1.93	3.3	0.004	0.73	0.0	0.04	18.49	0.00	1.549	11.02	3.47	1.8	98.2	0.0	3.70	0.62	0.82	0.84	1.74	34408	4272	35	0	16	0	0	logfile
✔	7T2E	25611	2023-08-09	2021-12-03	2.7	3.14	—	3.0	0.003	0.54	0.0	0.04	16.11	0.00	2.242	1.92	1.18	0.3	99.7	0.0	0.14	0.34	0.84	5.04	3.0	0.002	0.49	0.0	0.04	16.21	0.00	2.222	2.35	1.18	0.3	99.7	0.0	0.45	0.13	0.36	0.86	4.79	2390	312	2	0	0	0	0	logfile
✔	7K5X	22683	2023-08-16	2020-09-17	2.93	3.28	—	3.2	0.004	0.60	0.0	0.04	26.42	0.00	2.211	5.79	0.09	2.2	97.8	0.0	1.31	0.76	0.82	3.15	3.1	0.004	0.59	0.0	0.03	27.56	0.00	2.215	6.81	1.91	2.4	97.6	0.0	1.63	1.40	0.79	0.86	2.34	18291	1296	13	394	0	0	0	logfile
✔	8DWS	27758	2023-08-15	2022-08-02	3.73	4.92	3.73	3.6	0.004	0.79	4.0	0.05	14.37	0.00	2.013	6.84	0.32	8.2	91.2	0.6	-1.47	0.69	0.45	0.78	3.6	0.007	0.92	0.0	0.05	15.86	0.00	2.010	32.17	0.21	9.9	89.5	0.6	-1.42	1.99	0.90	0.83	0.71	17229	2182	7	0	0	0	0	logfile
✔	8DMK	27542	2023-08-10	2022-07-08	3.7	4.20	3.87	4.0	0.003	0.57	0.0	0.04	14.60	0.00	1.425	12.24	0.00	6.4	93.6	0.0	-1.18	0.76	0.66	1.02	4.0	0.003	0.61	0.0	0.04	16.05	0.00	2.086	15.88	0.25	6.3	93.7	0.0	-1.30	1.08	0.79	0.73	0.98	7348	917	6	0	6	0	0	logfile
✔	6KLL	0711	2023-08-12	2019-07-30	3.0	3.78	—	3.3	0.007	0.78	0.0	0.05	15.55	0.00	1.944	7.72	7.64	5.4	94.6	0.0	-3.74	0.68	0.87	3.00	3.3	0.004	0.60	0.0	0.05	15.87	0.00	1.892	6.74	2.71	4.1	95.9	0.0	-0.28	1.18	0.68	0.90	2.59	11748	1488	8	0	8	0	0	logfile
✔	7MDi	23773	2023-08-21	2021-04-05	4.3	4.42	—	4.3	0.006	0.75	0.0	0.04	13.13	0.00	2.089	11.76	0.17	10.8	89.2	0.1	-4.24	0.78	0.81	—	4.3	0.002	0.59	0.0	0.04	13.04	0.00	1.965	8.19	0.00	9.3	90.7	0.0	-1.47	0.46	0.78	0.81	—	30608	4348	20	0	24	24	0	logfile
✔	6X35	22018	2023-08-11	2020-05-21	4.2	4.14	—	4.2	0.001	0.37	0.0	0.03	8.42	0.00	2.202	3.37	0.05	1.8	98.1	0.0	-1.11	0.52	0.67	—	4.1	0.003	0.64	0.0	0.04	11.49	0.00	2.229	8.53	0.02	3.2	96.8	0.0	1.06	1.69	0.57	0.72	—	111888	14740	16	0	1432	0	0	logfile
✔	7UPi	26667	2023-08-10	2022-04-15	2.89	3.71	2.90	3.2	0.002	0.55	0.0	0.04	9.09	0.00	1.843	2.56	0.00	1.9	98.1	0.0	-0.12	0.91	0.87	3.97	3.2	0.002	0.56	0.0	0.04	10.89	0.00	2.006	4.22	0.11	2.1	97.9	0.0	-0.22	2.21	0.90	0.89	3.98	7775	972	5	0	5	0	0	logfile
✔	8GZ1	34387	2023-08-12	2022-09-24	3.4	3.77	3.44	3.7	0.004	0.68	0.0	0.05	14.29	0.00	1.940	11.26	0.00	5.0	95.0	0.0	0.65	0.55	0.77	2.03	3.7	0.005	0.73	0.0	0.04	16.26	0.00	2.140	10.34	0.78	5.3	94.7	0.0	0.91	0.53	0.57	0.80	1.79	11912	1445	10	0	19	0	0	logfile
✔	6KLN	0712	2023-08-12	2019-07-30	3.4	4.21	—	3.7	0.009	0.86	0.0	0.05	16.34	0.00	1.903	12.23	11.46	8.4	91.6	0.0	-4.65	0.70	0.88	2.12	3.8	0.003	0.64	0.0	0.04	15.13	0.00	1.923	8.62	0.16	4.0	96.0	0.0	-0.41	0.58	0.71	0.90	1.85	11748	1488	8	0	8	0	0	logfile
✔	7SZi	25567	2023-08-10	2021-11-27	2.7	3.34	—	3.1	0.002	0.44	0.0	0.04	13.00	0.00	2.265	3.93	0.12	3.5	96.4	0.1	0.36	0.70	0.86	5.04	3.1	0.004	0.54	0.0	0.04	14.28	0.00	2.186	3.74	0.96	3.8	96.1	0.1	0.05	0.24	0.72	0.88	5.17	8089	1038	4	0	0	0	0	logfile
✔	7VUH	32128	2023-08-11	2021-11-02	3.22	2.19	—	1.9	0.004	0.66	0.0	0.04	13.59	0.00	2.099	13.73	0.00	6.2	93.8	0.0	-1.87	0.71	0.69	2.81	1.4	0.005	0.70	0.0	0.04	15.83	0.00	2.031	14.94	0.11	6.0	94.0	0.0	-1.28	0.38	0.72	0.73	2.42	8302	1042	5	0	1	0	0	logfile
✔	7WY0	32883	2023-08-10	2022-02-15	2.83	2.21	—	2.0	0.007	0.87	0.0	0.06	11.98	0.00	1.690	7.73	0.00	6.2	93.8	0.0	-1.00	0.74	0.73	3.63	2.0	0.004	0.68	0.0	0.04	15.36	0.00	2.124	12.48	1.97	5.3	94.7	0.0	0.15	0.47	0.75	0.75	2.68	8723	1112	5	0	0	0	0	logfile
✔	8DPG	27634	2023-08-10	2022-07-15	3.6	2.36	3.57	2.2	0.002	0.49	0.0	0.04	9.47	0.00	2.151	4.40	0.61	0.9	99.1	0.0	1.82	0.73	0.69	1.78	2.1	0.002	0.54	0.0	0.04	13.50	0.00	2.090	5.22	0.12	2.2	97.8	0.0	1.05	1.11	0.76	0.72	1.84	8162	1093	6	0	2	0	0	logfile
✔	6E9E	9013	2023-08-10	2018-08-01	3.4	3.44	3.75	3.5	0.006	0.73	0.0	0.04	10.72	0.00	2.037	3.80	0.26	4.1	95.9	0.0	-4.95	0.77	0.82	4.40	3.4	0.002	0.55	0.0	0.04	14.06	0.00	2.236	5.64	0.13	2.1	97.9	0.0	0.73	1.11	0.78	0.89	3.69	8163	863	3	51	1	0	0	logfile
✔	7YK7	33889	2023-08-10	2022-07-21	2.75	2.37	2.86	2.2	0.006	0.80	0.0	0.05	14.10	0.00	2.115	9.26	0.11	6.0	94.0	0.0	-0.35	0.76	0.76	3.12	2.2	0.005	0.72	0.0	0.05	17.00	0.00	2.159	11.50	3.09	4.8	95.2	0.0	-0.17	1.16	0.78	0.79	2.69	8760	1122	6	0	1	0	0	logfile

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