Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KWZ	23059	2022-11-29	2020-12-02	3.2	3.41	—	3.4	0.006	0.80	0.0	0.05	12.48	0.00	2.271	14.29	0.00	7.3	92.7	0.0	-5.51	0.47	0.81	4.47	3.4	0.008	0.97	0.0	0.05	15.62	0.01	2.151	21.09	1.14	20.0	80.0	0.0	-5.58	1.07	0.49	0.85	4.11	4695	695	5	0	0	0	0	logfile
✔	6WYK	21967	2022-11-29	2020-05-13	4.0	4.14	—	4.2	0.007	0.77	0.0	0.05	11.98	0.00	2.223	5.97	0.00	3.4	96.6	0.0	-2.28	0.62	0.77	—	4.2	0.004	0.82	0.0	0.04	16.48	0.00	2.158	11.62	0.31	2.7	97.3	0.0	1.72	0.84	0.62	0.78	—	3083	415	1	0	0	0	0	logfile
✔	7KJR	22898	2022-11-29	2020-10-26	2.08	2.52	2.15	2.4	0.006	0.84	0.0	0.05	16.31	0.00	2.254	8.14	0.25	1.8	98.2	0.0	1.13	0.68	0.87	5.29	2.4	0.003	0.52	0.0	0.04	16.17	0.00	2.108	10.44	0.74	2.3	97.7	0.0	1.38	0.39	0.63	0.85	4.62	3840	448	8	0	2	122	0	logfile
✔	6WYJ	21966	2022-11-29	2020-05-13	3.7	3.74	—	3.8	0.010	0.64	0.0	0.05	12.33	0.00	2.268	5.08	0.00	5.3	94.7	0.0	-4.80	0.59	0.78	4.37	3.8	0.004	0.61	0.0	0.04	14.39	0.00	2.257	5.25	0.96	1.5	98.5	0.0	1.66	0.59	0.64	0.80	1.50	2949	398	1	0	0	0	0	logfile
✔	6LRQ	0958	2022-11-29	2020-01-16	3.49	3.59	—	4.0	0.009	0.85	0.0	0.05	11.88	0.00	2.205	20.30	0.00	14.8	85.2	0.0	-4.51	0.46	0.71	1.87	4.1	0.006	0.85	0.0	0.05	14.46	0.00	2.147	19.93	0.74	12.8	87.2	0.0	-3.04	1.58	0.46	0.71	1.16	2628	378	6	0	0	0	0	logfile
✔	6M7D	30129	2022-11-29	2020-03-18	2.9	2.82	—	2.8	0.010	1.03	0.0	0.07	13.84	0.00	2.157	15.64	0.58	2.4	97.6	0.0	-0.46	0.35	0.86	4.08	2.8	0.003	0.53	0.0	0.04	15.81	0.00	2.240	9.20	2.62	1.2	98.8	0.0	1.93	0.83	0.35	0.87	2.88	3280	412	2	6	0	0	0	logfile
✔	6ZRQ	11382	2022-11-29	2020-07-14	3.9	4.06	—	4.2	0.014	1.20	0.0	0.05	12.20	0.00	2.597	20.13	0.00	5.0	95.0	0.0	-4.20	0.64	0.62	3.62	4.2	0.003	0.70	0.0	0.04	12.79	0.00	2.180	20.13	0.00	15.4	84.6	0.0	-5.93	2.13	0.70	0.77	2.95	3816	276	12	0	0	0	1776	logfile
✔	7BX7	30235	2022-11-29	2020-04-17	2.8	2.94	—	2.9	0.009	0.84	0.0	0.04	12.96	0.00	2.228	15.34	0.00	9.3	90.7	0.0	-5.83	0.40	0.79	6.36	2.9	0.004	0.60	0.0	0.04	13.78	0.00	2.166	11.86	1.72	8.5	91.5	0.0	-5.45	1.13	0.41	0.79	6.15	1896	270	6	0	0	0	0	logfile
✔	6WLV	21843	2022-11-29	2020-04-20	3.45	3.67	—	3.6	0.004	0.56	0.0	0.04	13.21	0.00	2.211	9.21	0.00	4.7	95.3	0.0	-0.61	0.80	0.82	2.72	3.6	0.003	0.58	0.0	0.04	15.51	0.00	2.123	7.63	0.00	3.5	96.5	0.0	2.44	1.26	0.79	0.83	2.43	4111	512	3	0	3	0	0	logfile
✔	7LX5	23566	2022-11-29	2021-03-03	3.44	3.85	3.41	3.9	0.005	0.62	0.0	0.04	10.10	0.00	2.198	4.72	0.00	3.4	96.6	0.0	-0.46	0.71	0.81	3.26	3.9	0.003	0.72	0.0	0.04	15.79	0.00	2.166	9.43	1.08	2.9	97.1	0.0	-0.16	1.43	0.70	0.81	3.36	3485	448	3	0	0	0	0	logfile
✔	6LNi	0931	2022-11-29	2019-12-30	2.702	2.94	—	2.9	0.004	0.55	0.0	0.04	14.81	0.00	2.200	10.98	0.00	12.6	87.4	0.0	-6.05	0.48	0.82	5.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4920	600	10	0	0	0	0	logfile
✔	6WFQ	21652	2022-11-29	2020-04-03	3.9	4.88	3.77	3.9	0.002	0.49	0.0	0.03	16.66	0.00	2.265	8.11	0.80	4.3	95.7	0.0	-2.49	0.84	0.78	0.76	3.8	0.004	0.87	0.0	0.04	19.04	0.00	2.205	19.35	0.80	6.5	93.5	0.0	-0.24	0.73	0.85	0.80	0.76	4164	447	4	30	0	0	0	logfile
✔	6X0U	21984	2022-11-29	2020-05-17	3.6	3.62	—	3.6	0.004	0.62	0.0	0.04	14.50	0.00	2.277	5.74	0.00	3.7	96.1	0.3	-5.79	0.26	0.78	1.89	3.6	0.002	0.69	0.0	0.03	17.56	0.00	2.197	6.86	0.29	2.9	97.1	0.0	1.58	0.81	0.27	0.78	2.25	3091	398	4	0	0	0	0	logfile
✔	7LRS	23498	2022-11-29	2021-02-17	3.89	4.36	3.88	4.1	0.003	0.64	0.0	0.04	13.26	0.00	2.181	9.22	0.19	10.7	88.7	0.6	-2.85	0.87	0.79	2.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4912	625	5	0	8	0	0	logfile
✔	7KNT	22962	2022-11-29	2020-11-06	3.15	4.00	3.32	3.7	0.004	0.75	0.0	0.05	14.56	0.00	2.116	11.65	0.74	3.6	96.4	0.0	-0.48	0.58	0.75	1.64	3.7	0.003	0.71	0.0	0.04	16.05	0.00	2.229	12.73	0.25	2.7	97.3	0.0	0.57	0.49	0.57	0.75	0.28	3716	455	2	0	0	0	0	logfile
✔	7F63	31471	2022-11-29	2021-06-24	3.9	4.20	—	4.0	0.002	0.58	0.0	0.04	13.34	0.00	2.136	12.60	0.00	8.3	91.4	0.2	-2.31	0.63	0.62	1.27	4.0	0.003	0.79	0.0	0.05	15.84	0.00	2.142	15.49	0.54	10.0	89.5	0.5	-2.58	1.48	0.65	0.70	1.33	3375	429	3	0	0	0	0	logfile
✔	6XPD	22285	2022-11-29	2020-07-08	3.8	3.62	—	3.7	0.007	0.77	0.0	0.04	14.37	0.00	1.461	13.89	0.20	9.4	90.6	0.0	-3.83	0.60	0.85	1.65	3.6	0.004	0.74	0.0	0.04	16.82	0.00	1.978	10.69	0.78	5.1	94.9	0.0	1.30	1.38	0.60	0.83	2.30	4622	606	4	0	4	0	0	logfile
✔	7F62	31470	2022-11-29	2021-06-24	3.6	4.33	—	4.1	0.003	0.65	0.0	0.04	13.21	0.00	1.925	19.89	1.38	8.1	91.6	0.2	-2.76	0.66	0.62	0.54	4.1	0.003	0.66	0.0	0.04	15.35	0.00	2.242	11.10	0.55	9.8	90.2	0.0	-1.83	1.44	0.69	0.77	1.00	3321	427	3	0	0	0	0	logfile
✔	7U10	26273	2022-11-29	2022-02-19	3.0	3.45	—	4.3	0.003	0.57	0.0	0.05	15.69	0.00	2.230	10.70	0.00	6.8	93.2	0.0	-2.82	0.37	0.64	3.73	4.2	0.004	0.66	0.0	0.07	18.03	0.00	2.205	12.01	2.91	7.5	92.5	0.0	-3.34	2.75	0.28	0.68	3.19	3429	405	6	0	12	0	0	logfile
✔	7U14	26277	2022-11-29	2022-02-19	4.5	4.22	—	4.6	0.006	0.90	0.0	0.06	18.13	0.00	2.369	21.08	6.30	10.5	89.5	0.0	-3.07	0.30	0.52	—	4.4	0.006	0.96	0.0	0.07	15.68	0.00	2.175	21.37	0.00	14.8	85.2	0.0	-4.22	1.65	0.34	0.63	—	3456	405	6	0	12	0	0	logfile

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