Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WS3	32742	2023-02-27	2022-01-28	3.6	4.00	—	3.8	0.003	0.61	0.0	0.05	12.98	0.00	2.202	7.83	0.03	3.2	96.8	0.0	-0.92	0.80	0.76	2.72	3.8	0.003	0.63	0.0	0.05	15.04	0.00	2.119	8.31	0.09	4.1	95.9	0.0	-0.53	1.30	0.83	0.84	2.36	30215	3811	27	0	54	0	0	logfile
✘	6XP5	22284	2023-02-23	2020-07-08	4.2	4.73	—	4.3	0.004	0.90	0.0	0.05	14.32	0.00	2.131	14.85	0.27	15.9	83.2	0.9	-5.23	0.79	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21065	2707	15	0	221	0	0	logfile
✔	6CB1	7445	2023-02-27	2018-02-01	4.6	4.77	—	4.6	0.006	1.02	0.0	0.06	16.94	0.00	0.266	5.97	0.00	5.0	94.8	0.1	-2.68	0.66	0.49	—	4.5	0.004	0.79	0.0	0.04	18.17	0.00	2.026	21.56	0.00	8.9	91.1	0.0	-1.66	2.04	0.75	0.75	—	69945	6459	42	1615	694	0	0	logfile
✔	7WPD	32683	2023-02-26	2022-01-23	3.18	2.39	—	2.1	0.002	0.53	2.0	0.08	12.44	0.00	1.866	5.06	0.03	3.1	96.9	0.0	0.82	0.68	0.69	2.15	2.1	0.004	0.64	0.0	0.05	14.63	0.00	2.089	9.04	0.49	4.1	95.9	0.0	0.06	0.52	0.71	0.75	2.23	27762	3628	11	0	37	0	0	logfile
✔	7VAK	31845	2023-02-27	2021-08-30	4.7	3.87	4.25	4.0	0.003	0.55	0.0	0.04	13.32	0.00	2.115	9.01	0.00	2.9	97.1	0.0	0.43	0.71	0.75	—	3.8	0.004	0.68	0.0	0.05	14.06	0.00	2.126	11.26	0.00	4.7	95.3	0.0	-0.10	1.25	0.72	0.77	—	29462	3788	12	0	0	0	0	logfile
✔	6WZ5	21970	2023-02-20	2020-05-13	2.2	2.36	—	2.2	0.008	0.69	0.0	0.04	28.82	0.00	2.253	4.68	0.93	2.2	97.8	0.0	0.00	0.75	0.71	2.93	2.2	0.005	0.62	0.0	0.04	29.31	0.00	2.156	6.07	1.08	1.7	98.3	0.0	2.65	0.90	0.87	0.89	3.95	12443	774	10	306	0	0	0	logfile
✔	7CG0	30348	2023-02-19	2020-06-30	3.2	3.51	—	3.5	0.003	0.53	0.0	0.04	11.23	0.00	1.992	8.37	2.56	3.0	97.0	0.0	3.52	0.37	0.79	1.26	3.5	0.003	0.69	0.0	0.04	16.05	0.00	2.053	11.09	0.88	2.7	97.3	0.0	2.95	0.86	0.39	0.83	1.21	10928	1412	21	0	75	0	0	logfile
✔	7LUV	23527	2023-02-22	2021-02-23	3.7	4.02	—	3.6	0.007	0.80	0.0	0.05	9.84	0.00	2.050	10.89	0.05	9.6	90.1	0.3	-4.47	0.76	0.79	2.90	3.6	0.002	0.61	0.0	0.04	13.35	0.00	2.152	6.93	0.45	5.2	94.8	0.0	0.42	0.90	0.77	0.82	1.91	18773	2168	6	0	210	0	0	logfile
✔	6SAG	10130	2023-02-21	2019-07-16	2.0	2.11	2.01	2.1	0.004	0.65	0.0	0.04	12.99	0.00	0.351	2.79	0.00	2.6	97.4	0.0	-0.33	0.58	0.86	6.64	2.1	0.004	0.66	0.0	0.04	15.32	0.01	2.026	3.22	1.43	2.9	97.1	0.0	1.37	0.73	0.60	0.90	6.95	54080	6120	240	120	240	2840	0	logfile
✔	7PP4	13579	2023-02-24	2021-09-13	3.84	4.20	3.93	4.0	0.002	0.48	0.0	0.04	9.43	0.00	1.926	5.55	0.39	3.3	96.7	0.0	-0.03	0.83	0.80	1.49	4.0	0.005	0.72	0.0	0.04	13.88	0.00	2.041	11.96	0.35	5.4	94.6	0.0	-0.35	1.35	0.84	0.84	1.18	23816	3059	7	0	3	0	0	logfile
✔	7NVX	12616	2023-02-24	2021-03-16	3.9	3.92	3.77	3.8	0.003	0.49	0.0	0.04	15.65	0.00	1.971	6.61	0.00	4.5	95.5	0.0	0.85	0.70	0.64	1.31	3.8	0.004	0.72	0.0	0.04	18.10	0.00	0.904	15.82	0.32	5.1	94.8	0.0	-0.66	0.93	0.72	0.67	1.17	23663	2796	18	50	35	0	0	logfile
✔	7WRV	32736	2023-02-17	2022-01-27	2.47	2.59	—	2.7	0.003	0.60	0.0	0.04	14.42	0.00	2.061	3.93	0.58	2.9	97.1	0.0	0.27	0.47	0.74	3.28	2.6	0.003	0.57	0.0	0.05	16.18	0.00	1.966	5.35	2.90	5.5	94.5	0.0	-0.66	1.46	0.49	0.78	2.30	6359	427	3	0	0	0	3092	logfile
✔	8AP8	15561	2023-02-20	2022-08-09	3.7	3.98	3.47	3.8	0.002	0.39	0.0	0.04	8.11	0.00	2.139	2.40	0.31	1.6	98.4	0.0	2.44	0.72	0.82	1.61	3.8	0.003	0.51	0.0	0.04	13.75	0.00	2.107	5.71	0.78	3.4	96.6	0.0	2.09	1.18	0.73	0.84	1.53	12083	767	5	0	0	0	6098	logfile
✔	7KRA	23003	2023-02-22	2020-11-19	3.2	3.86	—	3.7	0.005	0.82	0.0	0.05	15.01	0.00	2.182	3.60	0.05	2.9	97.1	0.0	-2.08	0.77	0.83	3.19	3.7	0.003	0.67	0.0	0.04	16.46	0.00	2.110	7.51	0.37	9.0	91.0	0.0	-0.95	0.37	0.77	0.84	2.83	17293	2119	15	0	51	0	0	logfile
✔	7VB0	31873	2023-02-27	2021-08-30	3.6	2.84	3.39	3.2	0.003	0.55	0.0	0.04	13.49	0.00	1.982	6.16	0.00	1.9	98.1	0.0	0.96	0.63	0.78	2.84	3.2	0.002	0.54	0.0	0.04	16.23	0.00	2.005	8.35	0.23	2.1	97.9	0.0	0.54	0.72	0.65	0.79	2.41	29553	3788	16	0	5	0	0	logfile
✔	7PE8	13348	2023-02-27	2021-08-09	3.2	3.51	—	3.4	0.002	0.41	0.0	0.04	8.71	0.00	2.255	4.47	1.65	3.2	96.8	0.0	-0.20	0.79	0.81	2.75	3.4	0.002	0.52	0.0	0.04	12.64	0.00	2.179	7.09	0.40	4.0	96.0	0.0	0.66	0.49	0.80	0.83	1.94	29291	3832	8	0	3	0	0	logfile
✔	7K8Y	22735	2023-02-26	2020-09-27	4.4	5.34	—	4.4	0.002	0.53	0.0	0.05	10.71	0.00	1.137	21.70	0.04	2.8	97.0	0.3	-2.11	0.80	0.77	—	4.4	0.005	0.75	0.0	0.05	11.59	0.00	1.985	25.96	0.00	7.4	92.5	0.2	-1.14	1.18	0.82	0.83	—	25560	3242	8	0	23	0	0	logfile
✔	8D13	27114	2023-02-19	2022-05-26	2.43	3.23	2.44	2.8	0.003	0.60	0.0	0.05	13.77	0.00	2.067	4.19	0.64	0.8	99.2	0.0	1.47	0.69	0.86	4.45	2.8	0.003	0.55	0.0	0.04	14.58	0.00	1.865	3.90	0.43	1.7	98.3	0.0	1.47	1.49	0.70	0.92	4.43	9216	1113	9	0	6	432	0	logfile
✔	7WS0	32739	2023-02-27	2022-01-28	3.2	3.66	—	3.5	0.003	0.57	0.0	0.05	13.06	0.00	2.225	5.96	0.00	3.1	96.9	0.0	-0.91	0.80	0.80	2.70	3.5	0.004	0.63	0.0	0.05	14.80	0.00	2.108	7.64	0.25	4.8	95.2	0.0	-0.46	0.57	0.79	0.85	2.53	30440	3817	30	0	66	0	0	logfile
✔	7DL2	30708	2023-02-24	2020-11-25	4.4	4.72	—	4.3	0.006	0.88	1.0	0.06	13.74	0.00	2.198	35.63	1.11	10.1	89.8	0.1	-3.66	0.81	0.80	—	4.3	0.003	0.69	0.0	0.04	13.54	0.00	2.119	16.72	0.04	6.5	93.5	0.0	-0.03	0.58	0.82	0.82	—	23285	2886	6	0	203	0	0	logfile

• ← previous
• Page 4 of 353
• next →