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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8DPH | 27635 | 2023-08-10 | 2022-07-15 | 3.2 | 2.17 | 3.15 | 2.0 | 0.005 | 0.59 | 0.0 | 0.05 | 9.34 | 0.00 | 2.162 | 2.82 | 0.73 | 1.4 | 98.6 | 0.0 | 1.66 | 0.76 | 0.73 | 2.48 | 2.1 | 0.003 | 0.62 | 0.0 | 0.04 | 14.05 | 0.00 | 2.202 | 5.07 | 0.24 | 2.8 | 97.2 | 0.0 | 1.06 | 1.06 | 0.78 | 0.77 | 2.24 | 8182 | 1093 | 6 | 0 | 3 | 0 | 0 | logfile |
✔ | 7SP9 | 25369 | 2023-08-10 | 2021-11-02 | 2.9 | 3.20 | — | 3.1 | 0.004 | 0.57 | 0.0 | 0.05 | 11.91 | 0.00 | 2.245 | 5.66 | 0.00 | 1.2 | 98.8 | 0.0 | 1.62 | 0.71 | 0.78 | 2.80 | 3.1 | 0.003 | 0.63 | 0.0 | 0.04 | 15.14 | 0.00 | 2.276 | 9.71 | 2.87 | 2.6 | 97.2 | 0.1 | 1.04 | 1.27 | 0.74 | 0.85 | 3.40 | 5966 | 737 | 3 | 0 | 2 | 0 | 0 | logfile |
✔ | 8B01 | 15775 | 2023-08-09 | 2022-09-06 | 3.03 | 3.65 | 3.02 | 3.5 | 0.004 | 0.60 | 0.0 | 0.04 | 13.05 | 0.00 | 2.217 | 2.82 | 0.53 | 2.9 | 97.1 | 0.0 | 2.16 | 0.67 | 0.82 | 2.94 | 3.5 | 0.003 | 0.53 | 0.0 | 0.04 | 14.65 | 0.00 | 2.223 | 3.70 | 0.35 | 1.8 | 98.2 | 0.0 | 1.95 | 0.44 | 0.71 | 0.86 | 2.82 | 5478 | 684 | 5 | 0 | 15 | 0 | 0 | logfile |
✔ | 6ZH5 | 11214 | 2023-08-22 | 2020-06-21 | 2.7 | 3.69 | — | 3.3 | 0.007 | 0.73 | 0.0 | 0.04 | 18.44 | 0.00 | 2.015 | 8.51 | 12.67 | 1.1 | 98.9 | 0.0 | -2.77 | 0.85 | 0.86 | 1.93 | 3.3 | 0.004 | 0.73 | 0.0 | 0.04 | 18.49 | 0.00 | 1.549 | 11.02 | 3.47 | 1.8 | 98.2 | 0.0 | 3.70 | 0.62 | 0.82 | 0.84 | 1.74 | 34408 | 4272 | 35 | 0 | 16 | 0 | 0 | logfile |
✔ | 7T2E | 25611 | 2023-08-09 | 2021-12-03 | 2.7 | 3.14 | — | 3.0 | 0.003 | 0.54 | 0.0 | 0.04 | 16.11 | 0.00 | 2.242 | 1.92 | 1.18 | 0.3 | 99.7 | 0.0 | 0.14 | 0.34 | 0.84 | 5.04 | 3.0 | 0.002 | 0.49 | 0.0 | 0.04 | 16.21 | 0.00 | 2.222 | 2.35 | 1.18 | 0.3 | 99.7 | 0.0 | 0.45 | 0.13 | 0.36 | 0.86 | 4.79 | 2390 | 312 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K5X | 22683 | 2023-08-16 | 2020-09-17 | 2.93 | 3.28 | — | 3.2 | 0.004 | 0.60 | 0.0 | 0.04 | 26.42 | 0.00 | 2.211 | 5.79 | 0.09 | 2.2 | 97.8 | 0.0 | 1.31 | 0.76 | 0.82 | 3.15 | 3.1 | 0.004 | 0.59 | 0.0 | 0.03 | 27.56 | 0.00 | 2.215 | 6.81 | 1.91 | 2.4 | 97.6 | 0.0 | 1.63 | 1.40 | 0.79 | 0.86 | 2.34 | 18291 | 1296 | 13 | 394 | 0 | 0 | 0 | logfile |
✔ | 8DWS | 27758 | 2023-08-15 | 2022-08-02 | 3.73 | 4.92 | 3.73 | 3.6 | 0.004 | 0.79 | 4.0 | 0.05 | 14.37 | 0.00 | 2.013 | 6.84 | 0.32 | 8.2 | 91.2 | 0.6 | -1.47 | 0.69 | 0.45 | 0.78 | 3.6 | 0.007 | 0.92 | 0.0 | 0.05 | 15.86 | 0.00 | 2.010 | 32.17 | 0.21 | 9.9 | 89.5 | 0.6 | -1.42 | 1.99 | 0.90 | 0.83 | 0.71 | 17229 | 2182 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DMK | 27542 | 2023-08-10 | 2022-07-08 | 3.7 | 4.20 | 3.87 | 4.0 | 0.003 | 0.57 | 0.0 | 0.04 | 14.60 | 0.00 | 1.425 | 12.24 | 0.00 | 6.4 | 93.6 | 0.0 | -1.18 | 0.76 | 0.66 | 1.02 | 4.0 | 0.003 | 0.61 | 0.0 | 0.04 | 16.05 | 0.00 | 2.086 | 15.88 | 0.25 | 6.3 | 93.7 | 0.0 | -1.30 | 1.08 | 0.79 | 0.73 | 0.98 | 7348 | 917 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 6KLL | 0711 | 2023-08-12 | 2019-07-30 | 3.0 | 3.78 | — | 3.3 | 0.007 | 0.78 | 0.0 | 0.05 | 15.55 | 0.00 | 1.944 | 7.72 | 7.64 | 5.4 | 94.6 | 0.0 | -3.74 | 0.68 | 0.87 | 3.00 | 3.3 | 0.004 | 0.60 | 0.0 | 0.05 | 15.87 | 0.00 | 1.892 | 6.74 | 2.71 | 4.1 | 95.9 | 0.0 | -0.28 | 1.18 | 0.68 | 0.90 | 2.59 | 11748 | 1488 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 7MDi | 23773 | 2023-08-21 | 2021-04-05 | 4.3 | 4.42 | — | 4.3 | 0.006 | 0.75 | 0.0 | 0.04 | 13.13 | 0.00 | 2.089 | 11.76 | 0.17 | 10.8 | 89.2 | 0.1 | -4.24 | 0.78 | 0.81 | — | 4.3 | 0.002 | 0.59 | 0.0 | 0.04 | 13.04 | 0.00 | 1.965 | 8.19 | 0.00 | 9.3 | 90.7 | 0.0 | -1.47 | 0.46 | 0.78 | 0.81 | — | 30608 | 4348 | 20 | 0 | 24 | 24 | 0 | logfile |
✔ | 6X35 | 22018 | 2023-08-11 | 2020-05-21 | 4.2 | 4.14 | — | 4.2 | 0.001 | 0.37 | 0.0 | 0.03 | 8.42 | 0.00 | 2.202 | 3.37 | 0.05 | 1.8 | 98.1 | 0.0 | -1.11 | 0.52 | 0.67 | — | 4.1 | 0.003 | 0.64 | 0.0 | 0.04 | 11.49 | 0.00 | 2.229 | 8.53 | 0.02 | 3.2 | 96.8 | 0.0 | 1.06 | 1.69 | 0.57 | 0.72 | — | 111888 | 14740 | 16 | 0 | 1432 | 0 | 0 | logfile |
✔ | 7UPi | 26667 | 2023-08-10 | 2022-04-15 | 2.89 | 3.71 | 2.90 | 3.2 | 0.002 | 0.55 | 0.0 | 0.04 | 9.09 | 0.00 | 1.843 | 2.56 | 0.00 | 1.9 | 98.1 | 0.0 | -0.12 | 0.91 | 0.87 | 3.97 | 3.2 | 0.002 | 0.56 | 0.0 | 0.04 | 10.89 | 0.00 | 2.006 | 4.22 | 0.11 | 2.1 | 97.9 | 0.0 | -0.22 | 2.21 | 0.90 | 0.89 | 3.98 | 7775 | 972 | 5 | 0 | 5 | 0 | 0 | logfile |
✔ | 8GZ1 | 34387 | 2023-08-12 | 2022-09-24 | 3.4 | 3.77 | 3.44 | 3.7 | 0.004 | 0.68 | 0.0 | 0.05 | 14.29 | 0.00 | 1.940 | 11.26 | 0.00 | 5.0 | 95.0 | 0.0 | 0.65 | 0.55 | 0.77 | 2.03 | 3.7 | 0.005 | 0.73 | 0.0 | 0.04 | 16.26 | 0.00 | 2.140 | 10.34 | 0.78 | 5.3 | 94.7 | 0.0 | 0.91 | 0.53 | 0.57 | 0.80 | 1.79 | 11912 | 1445 | 10 | 0 | 19 | 0 | 0 | logfile |
✔ | 6KLN | 0712 | 2023-08-12 | 2019-07-30 | 3.4 | 4.21 | — | 3.7 | 0.009 | 0.86 | 0.0 | 0.05 | 16.34 | 0.00 | 1.903 | 12.23 | 11.46 | 8.4 | 91.6 | 0.0 | -4.65 | 0.70 | 0.88 | 2.12 | 3.8 | 0.003 | 0.64 | 0.0 | 0.04 | 15.13 | 0.00 | 1.923 | 8.62 | 0.16 | 4.0 | 96.0 | 0.0 | -0.41 | 0.58 | 0.71 | 0.90 | 1.85 | 11748 | 1488 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 7SZi | 25567 | 2023-08-10 | 2021-11-27 | 2.7 | 3.34 | — | 3.1 | 0.002 | 0.44 | 0.0 | 0.04 | 13.00 | 0.00 | 2.265 | 3.93 | 0.12 | 3.5 | 96.4 | 0.1 | 0.36 | 0.70 | 0.86 | 5.04 | 3.1 | 0.004 | 0.54 | 0.0 | 0.04 | 14.28 | 0.00 | 2.186 | 3.74 | 0.96 | 3.8 | 96.1 | 0.1 | 0.05 | 0.24 | 0.72 | 0.88 | 5.17 | 8089 | 1038 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VUH | 32128 | 2023-08-11 | 2021-11-02 | 3.22 | 2.19 | — | 1.9 | 0.004 | 0.66 | 0.0 | 0.04 | 13.59 | 0.00 | 2.099 | 13.73 | 0.00 | 6.2 | 93.8 | 0.0 | -1.87 | 0.71 | 0.69 | 2.81 | 1.4 | 0.005 | 0.70 | 0.0 | 0.04 | 15.83 | 0.00 | 2.031 | 14.94 | 0.11 | 6.0 | 94.0 | 0.0 | -1.28 | 0.38 | 0.72 | 0.73 | 2.42 | 8302 | 1042 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 7WY0 | 32883 | 2023-08-10 | 2022-02-15 | 2.83 | 2.21 | — | 2.0 | 0.007 | 0.87 | 0.0 | 0.06 | 11.98 | 0.00 | 1.690 | 7.73 | 0.00 | 6.2 | 93.8 | 0.0 | -1.00 | 0.74 | 0.73 | 3.63 | 2.0 | 0.004 | 0.68 | 0.0 | 0.04 | 15.36 | 0.00 | 2.124 | 12.48 | 1.97 | 5.3 | 94.7 | 0.0 | 0.15 | 0.47 | 0.75 | 0.75 | 2.68 | 8723 | 1112 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DPG | 27634 | 2023-08-10 | 2022-07-15 | 3.6 | 2.36 | 3.57 | 2.2 | 0.002 | 0.49 | 0.0 | 0.04 | 9.47 | 0.00 | 2.151 | 4.40 | 0.61 | 0.9 | 99.1 | 0.0 | 1.82 | 0.73 | 0.69 | 1.78 | 2.1 | 0.002 | 0.54 | 0.0 | 0.04 | 13.50 | 0.00 | 2.090 | 5.22 | 0.12 | 2.2 | 97.8 | 0.0 | 1.05 | 1.11 | 0.76 | 0.72 | 1.84 | 8162 | 1093 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 6E9E | 9013 | 2023-08-10 | 2018-08-01 | 3.4 | 3.44 | 3.75 | 3.5 | 0.006 | 0.73 | 0.0 | 0.04 | 10.72 | 0.00 | 2.037 | 3.80 | 0.26 | 4.1 | 95.9 | 0.0 | -4.95 | 0.77 | 0.82 | 4.40 | 3.4 | 0.002 | 0.55 | 0.0 | 0.04 | 14.06 | 0.00 | 2.236 | 5.64 | 0.13 | 2.1 | 97.9 | 0.0 | 0.73 | 1.11 | 0.78 | 0.89 | 3.69 | 8163 | 863 | 3 | 51 | 1 | 0 | 0 | logfile |
✔ | 7YK7 | 33889 | 2023-08-10 | 2022-07-21 | 2.75 | 2.37 | 2.86 | 2.2 | 0.006 | 0.80 | 0.0 | 0.05 | 14.10 | 0.00 | 2.115 | 9.26 | 0.11 | 6.0 | 94.0 | 0.0 | -0.35 | 0.76 | 0.76 | 3.12 | 2.2 | 0.005 | 0.72 | 0.0 | 0.05 | 17.00 | 0.00 | 2.159 | 11.50 | 3.09 | 4.8 | 95.2 | 0.0 | -0.17 | 1.16 | 0.78 | 0.79 | 2.69 | 8760 | 1122 | 6 | 0 | 1 | 0 | 0 | logfile |