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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8AG4 | 15415 | 2024-03-15 | 2022-07-19 | 2.46 | 2.04 | 2.48 | 1.7 | 0.003 | 0.49 | 0.0 | 0.04 | 13.59 | 0.00 | 2.170 | 5.34 | 0.00 | 3.9 | 96.1 | 0.0 | 0.77 | 0.82 | 0.83 | 4.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11155 | 1384 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YDi | 33748 | 2024-03-15 | 2022-07-04 | 3.98 | 3.84 | 3.72 | 3.8 | 0.003 | 0.70 | 0.0 | 0.05 | 14.60 | 0.00 | 1.938 | 5.91 | 0.67 | 3.8 | 96.2 | 0.0 | -0.82 | 0.64 | 0.62 | 0.76 | 3.8 | 0.003 | 0.91 | 0.0 | 0.04 | 16.06 | 0.00 | 2.121 | 11.20 | 4.28 | 3.8 | 96.2 | 0.0 | 0.01 | 1.66 | 0.71 | 0.72 | 1.14 | 9675 | 1229 | 5 | 0 | 5 | 0 | 0 | logfile |
✔ | 7UW9 | 26825 | 2024-03-25 | 2022-05-03 | 4.2 | 4.40 | 4.30 | 2.2 | 0.003 | 0.62 | 2.0 | 0.04 | 10.30 | 0.00 | 2.207 | 7.60 | 1.21 | 3.9 | 96.0 | 0.1 | 2.14 | 0.79 | 0.78 | — | 2.1 | 0.002 | 0.54 | 0.0 | 0.04 | 10.11 | 0.00 | 2.148 | 7.79 | 0.00 | 4.5 | 95.5 | 0.1 | 2.29 | 1.67 | 0.80 | 0.79 | — | 46156 | 7764 | 31 | 0 | 56 | 0 | 0 | logfile |
✔ | 6W7W | 21573 | 2024-03-20 | 2020-03-19 | 3.9 | 4.46 | — | 4.0 | 0.002 | 0.49 | 0.0 | 0.03 | 23.62 | 0.00 | 2.156 | 10.70 | 0.12 | 4.1 | 95.9 | 0.0 | -2.82 | 0.91 | 0.83 | 1.20 | 4.0 | 0.005 | 0.73 | 0.0 | 0.04 | 23.78 | 0.00 | 2.082 | 22.89 | 4.69 | 7.6 | 92.4 | 0.0 | -1.22 | 0.60 | 0.92 | 0.85 | 1.31 | 26883 | 1047 | 10 | 871 | 0 | 0 | 0 | logfile |
✔ | 7FD9 | 31537 | 2024-03-15 | 2021-07-16 | 4.0 | 4.34 | 3.85 | 3.8 | 0.007 | 1.28 | 0.0 | 0.13 | 17.54 | 0.00 | 2.266 | 9.05 | 0.00 | 6.4 | 93.6 | 0.0 | -0.84 | 0.71 | 0.80 | — | 3.8 | 0.004 | 0.64 | 0.0 | 0.04 | 14.70 | 0.00 | 2.186 | 12.10 | 1.94 | 6.4 | 93.6 | 0.0 | -0.32 | 0.99 | 0.72 | 0.82 | — | 11476 | 1534 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7R1W | 14242 | 2024-03-19 | 2022-02-03 | 3.6 | 4.16 | 3.69 | 4.0 | 0.006 | 0.69 | 0.0 | 0.05 | 13.74 | 0.00 | 1.387 | 8.79 | 0.16 | 4.7 | 95.0 | 0.3 | -2.64 | 0.74 | 0.81 | 3.05 | 4.0 | 0.004 | 0.55 | 0.0 | 0.04 | 14.56 | 0.00 | 2.053 | 5.86 | 0.71 | 4.1 | 95.9 | 0.0 | -0.08 | 0.99 | 0.75 | 0.83 | 2.74 | 23186 | 1509 | 6 | 0 | 0 | 0 | 11363 | logfile |
✔ | 8BYP | 16330 | 2024-03-18 | 2022-12-15 | 3.12 | 3.39 | 3.21 | 3.3 | 0.004 | 0.64 | 0.0 | 0.05 | 14.53 | 0.00 | 2.198 | 9.76 | 0.40 | 6.2 | 93.8 | 0.0 | -1.08 | 0.68 | 0.79 | 3.25 | 3.3 | 0.002 | 0.54 | 0.0 | 0.04 | 16.17 | 0.00 | 2.187 | 10.59 | 2.31 | 5.3 | 94.7 | 0.0 | -0.43 | 1.10 | 0.70 | 0.82 | 2.89 | 19836 | 2421 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SNH | 10257 | 2024-03-15 | 2019-08-24 | 3.9 | 4.16 | — | 3.9 | 0.008 | 1.24 | 1.0 | 0.06 | 14.35 | 0.00 | 2.181 | 19.70 | 1.49 | 11.0 | 88.9 | 0.1 | -4.30 | 0.65 | 0.71 | 2.25 | 3.9 | 0.003 | 0.88 | 0.0 | 0.04 | 15.35 | 0.00 | 2.198 | 11.20 | 1.99 | 6.0 | 94.0 | 0.0 | -0.19 | 0.98 | 0.70 | 0.83 | 1.77 | 7315 | 918 | 4 | 0 | 1 | 1 | 0 | logfile |
✔ | 7Uo2 | 26638 | 2024-03-11 | 2022-04-12 | 3.1 | 3.75 | — | 3.0 | 0.002 | 0.55 | 0.0 | 0.03 | 26.44 | 0.00 | 2.033 | 10.61 | 2.04 | 14.5 | 83.6 | 1.8 | -3.16 | 0.85 | 0.73 | 1.50 | 2.9 | 0.008 | 1.02 | 0.0 | 0.05 | 27.29 | 0.01 | 1.816 | 35.69 | 2.04 | 20.0 | 80.0 | 0.0 | -3.44 | 0.75 | 0.88 | 0.81 | 1.81 | 6735 | 112 | 2 | 271 | 3 | 0 | 0 | logfile |
✔ | 7KSR | 23024 | 2024-03-15 | 2020-11-24 | 4.1 | 4.28 | — | 4.2 | 0.004 | 0.70 | 0.0 | 0.05 | 11.74 | 0.00 | 2.200 | 1.91 | 0.00 | 5.5 | 94.5 | 0.0 | -4.46 | 0.65 | 0.70 | — | 4.2 | 0.003 | 0.63 | 0.0 | 0.04 | 13.13 | 0.00 | 1.810 | 10.44 | 0.00 | 4.8 | 95.2 | 0.0 | -1.11 | 1.08 | 0.69 | 0.77 | — | 11863 | 1524 | 5 | 0 | 7 | 0 | 0 | logfile |
✔ | 7oCY | 12816 | 2024-03-11 | 2021-04-28 | 4.25 | 4.55 | 4.29 | 4.4 | 0.003 | 0.62 | 0.0 | 0.04 | 12.49 | 0.00 | 1.980 | 9.97 | 0.00 | 4.9 | 95.1 | 0.0 | -0.08 | 0.73 | 0.77 | — | 4.4 | 0.003 | 0.66 | 0.0 | 0.04 | 12.51 | 0.00 | 2.163 | 11.82 | 0.00 | 3.2 | 96.8 | 0.0 | 1.02 | 1.86 | 0.74 | 0.79 | — | 7994 | 1243 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CK1 | 16689 | 2024-03-15 | 2023-02-14 | 3.9 | 3.75 | 3.90 | 3.8 | 0.004 | 0.75 | 0.0 | 0.05 | 16.95 | 0.00 | 2.200 | 15.75 | 0.59 | 8.4 | 91.6 | 0.0 | -2.07 | 0.42 | 0.81 | 1.48 | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 18.05 | 0.00 | 2.127 | 14.25 | 4.68 | 8.4 | 91.6 | 0.0 | -1.64 | 0.53 | 0.42 | 0.81 | 1.62 | 12580 | 1616 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7B2Q | 11990 | 2024-03-19 | 2020-11-27 | 3.76 | 2.44 | 3.70 | 3.3 | 0.004 | 0.55 | 0.0 | 0.04 | 13.63 | 0.00 | 2.002 | 9.33 | 0.00 | 5.2 | 94.7 | 0.1 | -0.98 | 0.71 | 0.68 | 1.69 | 2.2 | 0.006 | 0.90 | 1.0 | 0.04 | 15.72 | 0.01 | 1.891 | 18.71 | 3.49 | 7.5 | 92.5 | 0.0 | -1.63 | 1.28 | 0.70 | 0.68 | 2.02 | 23041 | 1495 | 6 | 0 | 5 | 0 | 11430 | logfile |
✔ | 8DY7 | 27777 | 2024-03-12 | 2022-08-03 | 3.18 | 3.44 | 3.26 | 3.4 | 0.003 | 0.65 | 0.0 | 0.04 | 17.41 | 0.00 | 1.507 | 3.64 | 0.00 | 4.3 | 95.7 | 0.0 | 0.22 | 0.71 | 0.81 | 2.62 | 3.4 | 0.003 | 0.61 | 0.0 | 0.04 | 18.33 | 0.00 | 1.965 | 4.74 | 0.66 | 4.3 | 95.7 | 0.0 | 0.41 | 0.29 | 0.73 | 0.83 | 2.40 | 61085 | 3612 | 14 | 149 | 5 | 0 | 29915 | logfile |
✔ | 6WX6 | 21951 | 2024-03-14 | 2020-05-09 | 2.0 | 2.11 | 2.08 | 2.1 | 0.006 | 0.69 | 0.0 | 0.04 | 14.94 | 0.00 | 2.277 | 0.00 | 0.00 | 1.2 | 98.8 | 0.0 | 1.60 | 0.77 | 0.88 | 7.70 | 2.1 | 0.003 | 0.51 | 0.0 | 0.03 | 16.14 | 0.00 | 2.032 | 2.91 | 0.69 | 1.2 | 98.8 | 0.0 | 4.80 | 0.56 | 0.79 | 0.90 | 7.39 | 68332 | 4128 | 56 | 0 | 8 | 2420 | 32664 | logfile |
✔ | 7UWD | 26829 | 2024-03-25 | 2022-05-03 | 4.1 | 4.40 | 4.24 | 2.3 | 0.006 | 0.78 | 1.0 | 0.05 | 10.38 | 0.00 | 2.218 | 5.49 | 1.17 | 5.1 | 94.7 | 0.2 | 1.93 | 0.77 | 0.74 | — | 2.1 | 0.003 | 0.56 | 0.0 | 0.04 | 9.98 | 0.00 | 2.144 | 6.89 | 0.00 | 5.5 | 94.4 | 0.1 | 2.25 | 0.38 | 0.83 | 0.85 | — | 46162 | 7772 | 31 | 0 | 56 | 0 | 0 | logfile |
✔ | 7VEA | 31944 | 2024-03-11 | 2021-09-08 | 3.7 | 3.55 | — | 3.5 | 0.009 | 1.13 | 0.0 | 0.04 | 13.27 | 0.00 | 2.098 | 6.48 | 0.58 | 1.5 | 98.4 | 0.0 | 2.51 | 0.65 | 0.78 | 1.44 | 3.6 | 0.004 | 0.75 | 0.0 | 0.04 | 16.07 | 0.00 | 2.058 | 14.65 | 3.66 | 2.1 | 97.9 | 0.0 | 2.40 | 1.40 | 0.69 | 0.77 | 1.12 | 111542 | 15594 | 165 | 0 | 84 | 0 | 0 | logfile |
✔ | 7Y6S | 33646 | 2024-03-19 | 2022-06-21 | 3.1 | 4.17 | 3.22 | 3.3 | 0.005 | 0.76 | 0.0 | 0.06 | 19.82 | 0.00 | 2.147 | 9.28 | 0.31 | 4.3 | 95.5 | 0.1 | -0.64 | 0.86 | 0.85 | 2.88 | 3.3 | 0.004 | 0.76 | 1.0 | 0.05 | 14.84 | 0.00 | 2.186 | 8.18 | 1.50 | 3.6 | 96.4 | 0.0 | 0.34 | 0.33 | 0.86 | 0.85 | 2.59 | 24852 | 3012 | 42 | 0 | 120 | 0 | 0 | logfile |
✔ | 8HFC | 34717 | 2024-03-10 | 2022-11-10 | 3.5 | 3.66 | 3.42 | 3.7 | 0.007 | 0.67 | 0.0 | 0.05 | 18.01 | 0.00 | 2.164 | 9.17 | 3.88 | 6.5 | 93.3 | 0.2 | -2.90 | 0.68 | 0.82 | 2.21 | 3.7 | 0.002 | 0.59 | 0.0 | 0.04 | 18.02 | 0.00 | 2.189 | 5.52 | 2.97 | 4.0 | 96.0 | 0.0 | 0.17 | 1.19 | 0.64 | 0.80 | 2.11 | 4007 | 498 | 3 | 0 | 3 | 0 | 0 | logfile |
✔ | 7VAP | 31857 | 2024-03-21 | 2021-08-30 | 3.0 | 2.45 | 2.98 | 2.9 | 0.004 | 0.54 | 0.0 | 0.04 | 13.61 | 0.00 | 1.645 | 3.89 | 0.00 | 2.0 | 98.0 | 0.0 | 1.43 | 0.54 | 0.79 | 3.19 | 2.9 | 0.003 | 0.58 | 0.0 | 0.04 | 16.87 | 0.00 | 1.920 | 5.64 | 2.21 | 2.2 | 97.8 | 0.0 | 0.59 | 0.57 | 0.63 | 0.85 | 2.90 | 29558 | 3788 | 15 | 0 | 6 | 0 | 0 | logfile |