Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7V4C	31707	2022-11-29	2021-08-12	3.3	2.93	—	3.4	0.008	0.75	0.0	0.06	12.47	0.00	2.305	12.50	0.00	20.0	80.0	0.0	-6.54	0.40	0.83	2.37	3.4	0.003	0.61	0.0	0.05	17.76	0.00	2.159	3.79	0.76	7.8	92.2	0.0	-4.65	1.18	0.40	0.83	3.35	1287	186	3	0	0	0	0	logfile
✔	7SJ4	25153	2022-11-29	2021-10-15	2.86	3.15	—	3.2	0.002	0.43	0.0	0.04	9.56	0.00	2.278	3.73	0.93	1.3	98.7	0.0	0.95	0.62	0.72	3.73	3.2	0.003	0.61	0.0	0.04	14.79	0.00	2.269	6.43	1.86	1.5	98.5	0.0	1.55	3.30	0.58	0.70	2.68	3909	481	4	0	0	24	0	logfile
✔	6QJH	4563	2022-11-29	2019-01-24	3.3	3.70	2.77	3.6	0.012	1.21	3.0	0.10	14.39	0.01	2.673	1.49	1.96	7.0	93.0	0.0	-3.22	0.36	0.83	2.97	3.6	0.003	0.61	0.0	0.05	15.77	0.00	2.278	5.61	0.00	2.3	97.7	0.0	-2.55	1.57	0.31	0.78	2.85	1302	177	3	0	0	0	0	logfile
✔	6JNC	9847	2022-11-29	2019-03-14	3.7	3.76	—	3.8	0.009	0.87	0.0	0.05	14.72	0.01	2.304	3.48	9.09	4.8	95.2	0.0	-5.69	0.46	0.78	1.61	3.8	0.005	0.61	0.0	0.05	15.66	0.00	2.291	5.00	0.00	4.6	95.4	0.0	-1.11	1.56	0.52	0.89	2.22	3294	419	1	0	1	0	0	logfile
✔	7RNN	24580	2022-11-29	2021-07-29	2.86	2.05	—	3.2	0.008	0.80	0.0	0.14	14.23	0.00	1.929	6.74	0.55	3.4	96.6	0.0	-1.11	0.50	0.76	5.00	3.2	0.003	0.61	0.0	0.04	16.00	0.00	2.273	5.55	1.37	1.7	98.3	0.0	0.60	0.96	0.49	0.87	4.12	4000	540	2	0	2	0	0	logfile
✔	6WYJ	21966	2022-11-29	2020-05-13	3.7	3.74	—	3.8	0.010	0.64	0.0	0.05	12.33	0.00	2.268	5.08	0.00	5.3	94.7	0.0	-4.80	0.59	0.78	4.37	3.8	0.004	0.61	0.0	0.04	14.39	0.00	2.257	5.25	0.96	1.5	98.5	0.0	1.66	0.59	0.64	0.80	1.50	2949	398	1	0	0	0	0	logfile
✔	7VV0	32133	2022-11-29	2021-11-04	3.5	3.69	—	3.7	0.010	1.49	1.0	0.09	14.09	0.01	2.007	11.04	2.93	4.5	95.5	0.0	-3.44	0.65	0.80	1.76	3.7	0.003	0.61	0.0	0.04	15.15	0.00	2.257	7.66	0.84	4.2	95.8	0.0	2.03	1.25	0.64	0.80	1.65	2175	268	2	0	1	0	0	logfile
✔	7QL2	14061	2022-11-29	2021-12-19	2.95	2.96	2.65	3.1	0.010	2.11	2.0	0.11	10.98	0.01	2.674	0.00	0.00	7.6	92.4	0.0	-2.82	0.30	0.74	4.50	3.4	0.003	0.61	0.0	0.05	12.64	0.00	2.504	1.31	2.22	9.0	91.0	0.0	-2.99	1.14	0.23	0.73	4.06	2286	150	3	0	0	0	1179	logfile
✔	7QES	13939	2022-11-29	2021-12-03	2.6	3.37	—	3.0	0.009	0.66	0.0	0.04	13.87	0.00	2.122	3.25	0.00	3.9	96.1	0.0	-0.99	0.77	0.86	3.39	3.0	0.003	0.61	0.0	0.04	15.28	0.00	2.162	3.90	0.91	3.1	96.9	0.0	2.67	1.25	0.78	0.86	2.82	3076	366	6	0	10	14	0	logfile
✔	7P66	13219	2022-11-29	2021-07-15	3.0	3.09	2.70	3.2	0.004	0.66	0.0	0.06	12.13	0.00	2.388	4.21	0.00	3.8	96.2	0.0	-2.50	0.48	0.82	4.06	3.2	0.005	0.62	0.0	0.05	15.20	0.00	2.173	6.37	1.72	5.5	94.5	0.0	-2.92	1.34	0.48	0.84	4.29	4060	540	5	0	0	0	0	logfile
✔	7LY0	23581	2022-11-29	2021-03-05	2.6	2.57	2.63	2.7	0.012	1.17	0.0	0.08	9.71	0.01	2.515	1.10	0.36	1.2	98.8	0.0	1.70	0.61	0.70	5.23	2.7	0.004	0.62	0.0	0.04	15.36	0.00	2.150	9.39	2.14	2.1	97.9	0.0	0.60	1.63	0.70	0.77	4.31	2805	354	5	0	6	0	0	logfile
✔	7LCK	23276	2022-11-29	2021-01-11	3.24	3.84	3.15	3.6	0.008	1.05	4.0	0.07	14.23	0.01	2.160	7.79	1.16	6.7	93.3	0.0	-0.93	0.69	0.79	2.21	3.7	0.003	0.62	0.0	0.04	15.17	0.00	2.228	4.83	0.58	4.1	95.9	0.0	0.64	0.55	0.66	0.79	2.04	3258	390	1	0	1	11	0	logfile
✔	6XDC	22136	2022-11-29	2020-06-10	2.9	3.80	—	3.7	0.006	0.79	0.0	0.06	13.65	0.01	2.279	4.95	1.15	4.0	96.0	0.0	-2.72	0.47	0.71	3.58	3.7	0.004	0.62	0.0	0.04	15.16	0.00	2.185	9.57	2.87	4.2	95.8	0.0	0.90	1.70	0.46	0.71	3.35	3150	386	2	0	0	0	0	logfile
✔	7VV6	32139	2022-11-29	2021-11-04	3.3	3.47	—	3.5	0.010	1.38	0.0	0.07	19.04	0.01	2.291	4.89	10.37	5.2	94.8	0.0	-4.22	0.62	0.83	1.64	3.4	0.003	0.62	0.0	0.04	17.02	0.00	2.186	6.88	0.41	2.2	97.8	0.0	3.08	0.69	0.63	0.85	2.36	2227	271	1	0	2	0	0	logfile
✔	7TPJ	26057	2022-11-29	2022-01-25	3.46	3.68	—	3.7	0.004	0.70	0.0	0.04	14.42	0.01	2.159	9.09	0.00	5.0	95.0	0.0	-0.01	0.57	0.69	1.76	3.7	0.003	0.62	0.0	0.04	16.04	0.00	2.254	9.09	0.60	4.8	95.2	0.0	0.77	1.43	0.58	0.72	1.71	4758	626	3	0	0	0	0	logfile
✔	7V4A	31705	2022-11-29	2021-08-12	3.2	3.19	—	3.3	0.002	0.52	0.0	0.05	14.28	0.00	2.423	8.54	0.00	7.9	92.1	0.0	-5.80	0.42	0.82	3.23	3.2	0.003	0.62	0.0	0.05	15.94	0.00	2.323	6.77	0.00	11.4	88.6	0.0	-4.21	1.70	0.42	0.82	3.25	1653	240	3	0	0	0	0	logfile
✔	6oUC	20202	2022-11-29	2019-05-04	2.8	3.00	—	3.0	0.008	1.15	1.0	0.08	9.03	0.01	2.131	6.96	0.00	3.5	96.5	0.0	-2.32	0.62	0.88	5.44	3.0	0.004	0.63	0.0	0.05	14.84	0.01	2.172	3.88	1.68	3.5	96.5	0.0	-0.43	1.18	0.64	0.90	3.76	3899	483	1	0	1	124	0	logfile
✔	7QEo	13935	2022-11-29	2021-12-03	2.9	3.47	—	3.1	0.008	0.69	0.0	0.04	13.62	0.00	2.106	5.39	0.00	3.9	96.1	0.0	0.61	0.78	0.88	3.13	3.1	0.003	0.63	0.0	0.04	15.41	0.00	2.184	6.36	0.91	2.5	97.5	0.0	2.81	0.47	0.78	0.88	2.74	3056	368	6	0	6	4	0	logfile
✔	7USB	26731	2022-11-29	2022-04-23	3.1	3.28	3.18	3.3	0.012	1.70	0.0	0.11	10.61	0.01	2.590	1.61	1.39	5.5	94.5	0.0	-0.28	0.59	0.76	5.40	3.3	0.003	0.63	0.0	0.05	13.28	0.00	2.383	4.82	0.00	4.5	95.5	0.0	-1.64	0.58	0.61	0.83	5.47	1661	213	3	0	5	0	0	logfile
✔	7BC6	12140	2022-11-29	2020-12-18	3.2	3.48	3.20	3.4	0.008	0.90	0.0	0.05	13.65	0.01	2.145	9.76	0.92	7.0	93.0	0.0	-1.77	0.64	0.85	2.92	3.4	0.003	0.63	0.0	0.04	15.29	0.00	2.201	7.85	0.23	4.2	95.8	0.0	0.39	0.28	0.55	0.82	2.09	4178	549	2	0	0	0	0	logfile

• ← previous
• Page 4 of 23
• next →