Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RHK	24464	2023-07-07	2021-07-17	3.27	2.87	—	3.1	0.012	0.72	0.0	0.05	14.31	0.00	2.260	6.51	0.00	2.8	97.2	0.0	0.46	0.63	0.83	1.80	3.1	0.002	0.47	0.0	0.04	15.69	0.00	2.193	10.72	0.25	2.7	97.3	0.1	2.00	0.30	0.62	0.85	1.98	14682	1776	8	0	5	0	0	logfile
✔	7o6E	12738	2023-07-16	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.49	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	1.6	0.003	0.47	0.0	0.03	18.14	0.00	2.203	3.42	0.38	0.7	99.3	0.0	4.41	0.27	0.88	0.90	5.26	35304	4248	48	0	0	1392	0	logfile
✔	7YVQ	34136	2023-07-14	2022-08-19	3.18	3.50	3.32	3.3	0.004	0.58	0.0	0.04	14.17	0.00	2.131	6.40	0.75	6.2	93.8	0.0	-0.26	0.79	0.87	3.43	3.3	0.002	0.47	0.0	0.04	14.98	0.00	2.207	6.67	0.49	4.8	95.2	0.0	0.12	1.28	0.79	0.89	3.08	30742	3874	15	0	21	0	0	logfile
✔	8iP3	35630	2023-07-06	2023-03-14	2.6	3.21	2.64	3.0	0.002	0.42	0.0	0.04	10.76	0.00	2.255	5.46	0.00	1.9	98.1	0.0	3.79	0.76	0.84	3.68	3.0	0.003	0.47	0.0	0.04	13.60	0.00	2.264	6.70	1.06	2.0	98.0	0.0	3.60	0.34	0.71	0.81	3.55	12868	1595	10	0	13	0	0	logfile
✔	7FGi	31582	2023-07-18	2021-07-27	2.51	2.92	—	2.7	0.012	0.87	0.0	0.05	16.62	0.00	1.814	1.37	2.16	3.0	97.0	0.0	-0.36	0.77	0.79	3.39	2.7	0.002	0.47	0.0	0.04	16.59	0.00	2.181	1.56	1.17	1.3	98.7	0.0	0.72	0.33	0.85	0.91	3.64	42288	5256	24	24	36	0	0	logfile
✔	7MQi	23948	2023-07-11	2021-05-05	3.21	3.01	3.19	3.2	0.006	0.79	0.0	0.05	12.23	0.00	2.202	2.71	0.59	1.4	98.6	0.0	0.80	0.67	0.81	4.51	3.1	0.002	0.47	0.0	0.04	14.20	0.00	2.125	3.56	0.17	2.3	97.7	0.0	1.41	1.80	0.74	0.86	4.11	12696	1640	16	16	0	0	0	logfile
✔	7XTZ	33453	2023-07-03	2022-05-18	2.8	2.99	2.73	2.9	0.012	0.90	0.0	0.05	13.57	0.00	2.204	0.77	0.42	3.2	96.8	0.0	-0.29	0.83	0.84	4.09	2.9	0.002	0.48	0.0	0.04	14.33	0.00	2.060	2.70	0.70	3.1	96.9	0.0	0.02	0.30	0.83	0.86	3.72	51900	3291	21	0	75	0	25032	logfile
✔	7MQF	23945	2023-07-11	2021-05-05	2.88	2.74	2.86	2.8	0.006	0.72	0.0	0.06	11.73	0.00	2.175	1.01	0.00	0.5	99.5	0.0	1.24	0.72	0.87	6.16	2.7	0.003	0.48	0.0	0.04	13.43	0.00	2.255	2.60	0.00	1.0	99.0	0.0	1.00	0.44	0.78	0.91	5.71	12288	1608	16	16	0	0	0	logfile
✔	7K0P	22606	2023-07-09	2020-09-04	3.1	3.68	—	3.6	0.005	0.71	0.0	0.04	13.66	0.00	2.183	5.21	0.00	2.5	97.5	0.0	0.92	0.69	0.82	3.20	3.6	0.003	0.48	0.0	0.04	14.96	0.00	2.162	4.76	0.05	2.3	97.7	0.0	1.50	0.30	0.68	0.82	2.71	18572	2342	14	0	15	0	0	logfile
✔	7NKD	12438	2023-07-05	2021-02-17	3.12	3.57	—	3.2	0.003	0.45	0.0	0.04	14.50	0.00	2.134	6.59	0.00	1.7	98.3	0.0	2.45	0.85	0.81	2.57	3.2	0.003	0.48	0.0	0.04	15.43	0.00	2.128	7.12	0.00	1.5	98.5	0.0	3.15	0.91	0.85	0.83	2.19	9555	643	8	0	0	0	4768	logfile
✔	7SK8	25176	2023-07-07	2021-10-19	3.3	3.55	—	3.5	0.009	0.88	0.0	0.22	14.30	0.00	2.265	2.62	0.00	5.2	94.8	0.0	-0.08	0.70	0.83	3.30	3.5	0.003	0.48	0.0	0.04	15.06	0.00	2.153	4.37	0.00	5.2	94.8	0.0	0.17	0.29	0.69	0.83	3.37	13389	835	7	0	8	0	6513	logfile
✔	8G0L	29657	2023-07-04	2023-01-31	3.39	4.48	3.47	3.9	0.003	0.48	0.0	0.03	16.92	0.00	2.289	5.58	0.10	2.0	98.0	0.0	3.32	0.93	0.90	2.06	3.9	0.002	0.48	0.0	0.03	17.10	0.00	2.248	5.69	0.10	2.0	98.0	0.0	3.31	0.18	0.93	0.90	2.07	8872	1088	3	0	1	0	0	logfile
✔	8DBG	27283	2023-07-07	2022-06-14	2.2	2.20	2.25	2.2	0.007	0.69	0.0	0.05	15.18	0.00	1.958	4.92	1.97	3.4	96.6	0.0	0.54	0.71	0.86	6.29	2.2	0.002	0.48	0.0	0.05	16.08	0.00	1.996	5.40	2.23	3.3	96.7	0.0	1.17	0.31	0.74	0.90	5.48	14442	1854	18	0	30	12	0	logfile
✔	7RHH	24461	2023-07-07	2021-07-17	3.31	3.03	—	3.0	0.012	0.65	0.0	0.05	13.02	0.00	2.231	5.58	0.06	2.2	97.8	0.0	0.69	0.68	0.84	2.48	3.0	0.002	0.48	0.0	0.04	14.33	0.00	2.191	9.27	0.06	2.1	97.9	0.0	1.55	0.38	0.69	0.87	2.40	14717	1784	8	0	4	0	0	logfile
✔	7XKQ	33264	2023-07-12	2022-04-20	3.3	3.61	3.27	3.3	0.003	0.50	0.0	0.04	13.48	0.00	1.967	4.96	0.00	2.0	98.0	0.0	1.22	0.86	0.89	2.81	3.3	0.002	0.48	0.0	0.04	14.84	0.00	1.983	6.06	0.11	2.2	97.8	0.0	1.46	0.40	0.87	0.91	2.38	25299	3259	15	0	13	0	0	logfile
✔	7K0Q	22608	2023-07-04	2020-09-04	3.3	3.61	—	3.5	0.006	0.70	0.0	0.05	12.64	0.00	2.116	5.18	0.00	3.3	96.7	0.0	0.45	0.70	0.85	3.35	3.5	0.002	0.48	0.0	0.04	14.21	0.00	2.189	4.84	0.11	2.5	97.5	0.0	1.24	1.46	0.73	0.87	2.87	8778	1107	5	0	2	0	0	logfile
✔	7oo8	13007	2023-07-07	2021-05-26	3.7	2.99	3.39	3.0	0.003	0.40	0.0	0.04	9.89	0.00	2.286	6.45	0.00	1.9	98.1	0.0	2.79	0.65	0.79	2.44	3.0	0.002	0.48	0.0	0.04	14.80	0.00	2.290	9.85	0.20	1.2	98.8	0.0	2.54	0.44	0.65	0.79	2.22	13923	1827	7	0	0	0	0	logfile
✔	7XDE	33145	2023-07-08	2022-03-26	2.72	3.00	2.86	3.1	0.011	0.82	0.0	0.05	13.03	0.00	2.110	8.62	0.63	1.2	98.8	0.0	0.38	0.68	0.81	3.27	3.1	0.003	0.48	0.0	0.04	15.72	0.00	2.132	8.20	1.42	1.6	98.4	0.0	0.92	1.11	0.64	0.80	2.93	17896	2248	8	0	4	0	0	logfile
✔	7UKG	26580	2023-07-04	2022-04-01	2.24	2.56	2.27	2.5	0.006	0.58	0.0	0.04	13.16	0.00	2.208	6.08	0.00	1.8	98.2	0.0	2.95	0.68	0.88	4.70	2.5	0.003	0.48	0.0	0.04	13.81	0.00	2.354	5.86	0.22	1.8	98.2	0.0	3.84	0.22	0.70	0.90	4.29	8652	1128	10	0	4	0	0	logfile
✔	7PXH	13703	2023-07-13	2021-10-08	2.59	3.11	2.60	3.0	0.006	0.79	0.0	0.04	13.60	0.00	2.079	4.27	0.45	1.8	98.2	0.0	0.70	0.77	0.87	3.60	3.0	0.003	0.48	0.0	0.04	15.06	0.00	2.187	5.38	1.58	2.1	97.9	0.0	1.21	0.43	0.77	0.90	3.69	28922	3540	8	0	39	0	0	logfile

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