Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NG9	12310	2021-09-04	2021-02-08	3.3	3.48	3.33	3.5	0.007	0.48	0.0	0.04	14.72	0.00	2.250	4.13	0.85	3.6	96.4	0.0	-0.87	0.62	0.80	4.09	3.5	0.004	0.51	0.0	0.03	15.83	0.00	2.133	7.13	0.09	2.7	97.3	0.0	2.01	2.72	0.69	0.85	3.51	19368	1263	3	0	0	0	9615	logfile
✔	7oDF	12827	2021-09-02	2021-04-29	2.66	3.20	—	3.1	0.003	0.49	0.0	0.04	16.48	0.00	1.952	6.12	0.00	1.4	98.6	0.0	1.47	0.75	0.83	3.58	3.1	0.002	0.51	0.0	0.04	17.71	0.00	2.024	7.47	2.35	2.1	97.9	0.0	1.92	0.89	0.72	0.82	3.20	6847	703	7	78	2	5	0	logfile
✔	6UGD	20761	2021-09-03	2019-09-26	3.5	3.93	—	3.8	0.006	1.00	0.0	0.05	14.47	0.01	2.082	3.49	0.23	7.4	92.5	0.1	-4.95	0.65	0.69	1.81	3.8	0.002	0.51	0.0	0.04	16.01	0.00	2.051	4.99	0.00	4.0	96.0	0.0	-1.05	1.58	0.72	0.82	1.21	13928	1865	13	0	11	0	0	logfile
✔	6ZBD	11151	2021-09-04	2020-06-08	3.21	3.97	3.37	3.6	0.010	1.19	0.0	0.08	13.68	0.01	2.466	0.87	0.00	0.9	99.1	0.0	0.87	0.85	0.78	1.78	3.6	0.003	0.51	0.0	0.03	15.20	0.00	1.962	4.51	0.09	1.6	98.4	0.0	4.40	2.14	0.86	0.81	1.60	19519	1159	4	0	0	0	9896	logfile
✔	6U6D	20663	2021-09-03	2019-08-29	3.6	3.73	—	3.7	0.002	0.51	0.0	0.04	12.89	0.00	2.227	6.53	0.00	3.4	96.6	0.0	-4.06	0.79	0.84	1.77	3.7	0.002	0.51	0.0	0.04	15.61	0.00	2.146	6.59	0.27	3.4	96.6	0.0	0.00	0.53	0.82	0.84	2.26	16770	2156	10	0	2	0	0	logfile
✔	7P0M	13148	2021-09-04	2021-06-30	2.75	3.51	2.75	2.7	0.002	0.44	0.0	0.04	16.31	0.00	1.800	7.40	1.88	1.7	98.3	0.0	1.65	0.95	0.88	2.52	2.8	0.003	0.51	0.0	0.04	16.47	0.00	2.016	9.38	2.29	1.8	98.2	0.0	1.61	0.26	0.96	0.89	2.23	25185	3185	19	0	45	0	0	logfile
✔	6SZV	10355	2021-09-03	2019-10-02	2.5	2.59	2.51	2.6	0.007	0.61	0.0	0.04	13.05	0.01	1.763	3.79	3.65	4.6	95.3	0.1	-2.79	0.68	0.85	4.62	2.6	0.002	0.51	0.0	0.04	16.31	0.00	2.001	6.68	2.39	1.5	98.5	0.0	0.98	0.99	0.72	0.88	4.22	14847	1694	15	41	7	217	0	logfile
✔	7B03	11955	2021-09-02	2020-11-18	2.93	2.97	—	2.9	0.005	0.90	0.0	0.04	13.62	0.00	2.190	7.91	0.00	1.9	98.1	0.0	1.34	0.69	0.81	1.85	2.9	0.003	0.51	0.0	0.04	16.38	0.00	2.119	7.90	2.03	1.5	98.5	0.0	1.62	0.43	0.68	0.82	1.44	8670	1085	10	0	5	0	0	logfile
✔	6VRS	21371	2021-09-03	2020-02-09	2.7	3.22	—	2.9	0.008	1.49	5.0	0.11	14.48	0.01	2.012	2.39	1.82	3.1	96.6	0.3	-0.31	0.95	0.92	6.32	2.9	0.004	0.51	0.0	0.04	15.02	0.00	1.706	5.79	0.17	2.6	97.3	0.1	2.06	1.01	0.94	0.91	4.60	12208	1548	12	0	8	16	0	logfile
✔	7JLW	22382	2021-09-06	2020-07-30	2.5	2.52	2.49	2.5	0.009	1.07	0.0	0.07	15.06	0.00	2.377	3.99	1.14	1.1	98.9	0.0	0.51	0.62	0.82	4.64	2.5	0.003	0.51	0.0	0.04	15.79	0.00	2.042	6.09	1.42	0.7	99.3	0.0	3.05	1.01	0.66	0.85	4.04	40284	2316	36	0	132	204	18720	logfile
✔	7NS3	12559	2021-09-03	2021-03-05	3.5	3.47	3.37	3.4	0.003	0.57	0.0	0.04	14.36	0.00	2.130	6.40	0.07	5.6	94.4	0.0	0.27	0.83	0.86	2.46	3.4	0.003	0.51	0.0	0.04	15.60	0.00	2.210	5.27	0.33	5.1	94.9	0.0	1.08	0.28	0.83	0.85	1.89	14448	1849	6	0	0	0	0	logfile
✔	6YE4	10789	2021-09-02	2020-03-24	3.2	3.33	3.07	3.3	0.026	1.69	0.0	0.10	14.61	0.01	2.373	3.02	0.00	0.9	99.1	0.0	-3.36	0.73	0.88	2.50	3.3	0.003	0.51	0.0	0.03	16.37	0.00	2.352	4.69	0.11	2.2	97.8	0.0	3.69	0.94	0.72	0.88	1.56	9140	1180	10	0	5	0	0	logfile
✔	7A7C	11677	2021-09-02	2020-08-27	3.16	3.66	3.23	3.5	0.003	0.54	0.0	0.04	13.51	0.00	2.199	6.63	0.00	4.5	95.5	0.0	-0.97	0.82	0.87	3.57	3.5	0.003	0.52	0.0	0.04	14.71	0.00	2.095	6.30	0.11	3.7	96.3	0.0	0.14	0.28	0.83	0.88	3.05	9387	1226	2	0	1	0	0	logfile
✔	6WTH	21896	2021-09-03	2020-05-02	3.06	3.56	3.08	3.4	0.002	0.54	0.0	0.04	6.83	0.00	2.217	4.94	0.84	2.2	97.8	0.0	-3.50	0.72	0.75	3.88	3.4	0.003	0.52	0.0	0.04	12.50	0.00	2.207	7.09	0.19	3.9	96.1	0.0	-0.58	0.59	0.78	0.87	3.63	11740	1183	12	0	422	0	0	logfile
✔	6CNM	7537	2021-09-03	2018-03-08	3.4	3.51	—	3.5	0.009	1.00	0.0	0.05	10.72	0.01	2.331	1.47	0.00	4.3	95.7	0.0	-4.29	0.64	0.84	3.41	3.5	0.002	0.52	0.0	0.04	13.83	0.00	2.205	4.29	0.28	2.7	97.3	0.0	2.48	0.60	0.64	0.85	2.16	12541	1700	12	0	17	0	0	logfile
✔	6XF5	22161	2021-09-04	2020-06-15	3.45	4.18	3.64	3.8	0.005	0.82	1.0	0.05	12.43	0.01	2.234	4.43	0.53	3.3	96.7	0.0	-0.31	0.84	0.80	1.82	3.8	0.002	0.52	0.0	0.04	13.80	0.00	2.185	8.57	0.23	3.6	96.4	0.0	0.64	1.30	0.86	0.86	2.24	24486	3027	18	0	60	0	0	logfile
✔	6T0S	10358	2021-09-03	2019-10-03	3.04	3.11	3.10	3.1	0.003	0.60	0.0	0.04	13.17	0.01	2.109	4.34	4.69	2.8	97.2	0.0	-3.21	0.68	0.86	3.59	3.1	0.003	0.52	0.0	0.04	15.09	0.00	1.980	8.47	0.33	2.1	97.9	0.0	0.67	0.54	0.69	0.87	3.40	14651	1700	6	43	2	0	0	logfile
✔	7JR9	22444	2021-09-03	2020-08-11	2.95	3.21	—	3.1	0.008	0.82	0.0	0.05	8.26	0.01	2.235	4.11	0.00	3.1	96.9	0.0	-2.53	0.84	0.89	5.25	3.1	0.002	0.52	0.0	0.04	13.28	0.00	2.182	6.34	0.78	2.2	97.8	0.0	0.74	0.60	0.85	0.90	4.59	10021	1300	7	0	14	0	0	logfile
✔	6Y59	10691	2021-09-05	2020-02-25	3.2	4.61	3.12	3.4	0.008	0.94	0.0	0.05	12.32	0.01	2.376	3.45	0.00	1.2	98.8	0.0	-3.39	0.92	0.84	2.09	3.4	0.003	0.52	0.0	0.04	13.42	0.00	2.148	9.50	0.11	2.9	97.1	0.0	0.60	1.21	0.93	0.87	2.23	31910	1915	5	0	0	0	16045	logfile
✔	6ZLM	11268	2021-09-09	2020-06-30	4.3	4.68	4.28	4.4	0.005	0.63	0.0	0.04	10.21	0.00	2.092	2.33	0.00	2.3	97.7	0.0	-1.17	0.80	0.84	—	4.4	0.002	0.52	0.0	0.04	12.00	0.00	1.941	7.90	0.00	1.4	98.6	0.0	1.49	1.10	0.80	0.87	—	214080	13920	72	0	156	0	108240	logfile

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