Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NKQ	12446	2023-02-19	2021-02-18	2.98	3.25	—	3.1	0.004	0.49	0.0	0.04	13.52	0.00	2.018	7.16	0.00	2.7	97.3	0.0	1.39	0.81	0.81	2.98	3.1	0.003	0.48	0.0	0.04	15.71	0.00	2.008	6.87	1.05	2.3	97.7	0.0	2.27	0.33	0.82	0.84	2.51	10621	714	8	0	0	0	5312	logfile
✔	7STL	25432	2023-02-25	2021-11-14	2.95	3.30	—	3.2	0.004	0.75	0.0	0.04	10.31	0.00	2.190	0.38	0.15	2.3	97.7	0.0	1.82	0.67	0.82	3.24	3.2	0.004	0.48	0.0	0.04	13.91	0.00	2.104	2.76	0.59	3.5	96.3	0.1	1.65	0.57	0.66	0.84	3.21	25668	1600	4	0	8	0	12568	logfile
✔	7VYQ	32211	2023-02-22	2021-11-15	3.13	3.33	—	3.4	0.005	0.78	0.0	0.04	17.69	0.01	2.056	6.00	0.00	2.8	97.2	0.0	-1.84	0.64	0.89	3.89	3.4	0.003	0.48	0.0	0.04	16.70	0.00	1.980	7.45	0.00	4.3	95.7	0.0	-0.98	1.21	0.58	0.87	3.53	17080	1120	8	0	8	0	8340	logfile
✔	7RQX	24639	2023-02-27	2021-08-08	3.36	3.59	—	3.5	0.012	1.06	0.0	0.06	16.98	0.01	2.227	8.03	0.00	3.4	96.6	0.0	-0.29	0.67	0.75	2.39	3.5	0.003	0.48	0.0	0.03	16.18	0.00	2.021	8.41	0.07	3.9	96.1	0.0	0.47	1.13	0.67	0.80	2.59	30450	2016	8	0	26	0	14344	logfile
✔	8GS2	34218	2023-02-22	2022-09-04	2.84	3.09	2.94	3.1	0.002	0.42	0.0	0.04	10.20	0.00	1.579	4.49	0.30	1.2	98.8	0.0	1.18	0.74	0.89	4.67	3.1	0.002	0.48	0.0	0.04	15.09	0.00	2.185	6.70	1.56	1.7	98.3	0.0	1.43	1.32	0.74	0.90	4.14	16935	1916	7	64	4	0	0	logfile
✔	7oo0	13003	2023-02-21	2021-05-26	3.1	3.05	2.96	3.1	0.012	1.13	0.0	0.07	12.80	0.00	2.131	7.27	0.00	3.1	96.9	0.0	-1.80	0.61	0.78	2.85	3.1	0.003	0.48	0.0	0.04	13.74	0.00	2.306	5.69	0.27	1.5	98.5	0.0	1.66	1.54	0.61	0.79	2.26	16016	1834	14	0	56	0	0	logfile
✔	7Z0Z	14435	2023-02-22	2022-02-24	2.68	2.92	2.79	2.8	0.006	0.72	6.0	0.05	14.67	0.00	2.092	7.37	0.54	1.9	98.0	0.2	0.45	0.74	0.86	4.83	2.8	0.003	0.48	0.0	0.04	16.57	0.00	2.174	5.16	1.06	2.0	97.8	0.2	1.32	0.44	0.78	0.90	4.34	29466	3510	6	0	0	0	0	logfile
✔	6ZBG	11154	2023-02-23	2020-06-08	3.2	3.97	3.37	3.6	0.010	1.15	0.0	0.07	13.62	0.01	2.468	1.13	0.00	1.1	98.9	0.0	0.72	0.84	0.78	2.20	3.6	0.002	0.48	0.0	0.03	15.23	0.00	2.139	4.51	0.09	0.8	99.2	0.0	4.37	1.86	0.85	0.79	1.51	19534	1160	4	0	0	0	9902	logfile
✔	6VRS	21371	2023-02-20	2020-02-09	2.7	3.22	—	2.9	0.008	1.49	5.0	0.11	14.48	0.01	2.012	2.39	1.82	3.1	96.6	0.3	-0.31	0.95	0.92	6.32	2.9	0.003	0.48	0.0	0.04	15.07	0.00	2.075	6.00	0.17	2.3	97.7	0.0	2.16	1.01	0.94	0.90	4.30	12208	1548	12	0	8	16	0	logfile
✔	7NKD	12438	2023-02-19	2021-02-17	3.12	3.57	—	3.2	0.003	0.45	0.0	0.04	14.50	0.00	2.134	6.59	0.00	1.7	98.3	0.0	2.45	0.85	0.81	2.57	3.2	0.003	0.48	0.0	0.04	15.43	0.00	2.128	7.12	0.00	1.5	98.5	0.0	3.15	0.91	0.85	0.83	2.19	9555	643	8	0	0	0	4768	logfile
✔	7SK8	25176	2023-02-21	2021-10-19	3.3	3.55	—	3.5	0.009	0.88	0.0	0.22	14.30	0.00	2.265	2.62	0.00	5.2	94.8	0.0	-0.08	0.70	0.83	3.30	3.5	0.003	0.48	0.0	0.04	15.06	0.00	2.153	4.37	0.00	5.2	94.8	0.0	0.17	0.29	0.69	0.83	3.37	13389	835	7	0	8	0	6513	logfile
✔	7PXH	13703	2023-02-26	2021-10-08	2.59	3.11	2.60	3.0	0.006	0.79	0.0	0.04	13.60	0.00	2.079	4.27	0.45	1.8	98.2	0.0	0.70	0.77	0.87	3.60	3.0	0.003	0.48	0.0	0.04	15.06	0.00	2.187	5.38	1.58	2.1	97.9	0.0	1.21	0.43	0.77	0.90	3.69	28922	3540	8	0	39	0	0	logfile
✔	7K0N	22604	2023-02-22	2020-09-04	3.1	3.55	—	3.5	0.004	0.69	0.0	0.04	13.94	0.00	2.227	6.22	0.32	2.5	97.5	0.0	0.72	0.73	0.82	2.88	3.5	0.002	0.48	0.0	0.04	15.30	0.00	2.253	5.17	0.05	2.0	98.0	0.0	1.15	1.06	0.72	0.84	2.63	18470	2340	14	0	18	0	0	logfile
✔	7Y9X	33695	2023-02-22	2022-06-26	2.49	2.67	2.52	2.7	0.004	0.52	0.0	0.04	9.50	0.00	2.130	5.49	0.31	1.6	98.4	0.0	-0.15	0.70	0.82	4.82	2.7	0.002	0.48	0.0	0.04	14.67	0.00	2.206	6.55	1.30	1.4	98.6	0.0	1.17	1.95	0.67	0.82	3.94	18662	2192	4	38	4	0	0	logfile
✔	7UKG	26580	2023-02-18	2022-04-01	2.24	2.56	2.27	2.5	0.006	0.58	0.0	0.04	13.16	0.00	2.208	6.08	0.00	1.8	98.2	0.0	2.95	0.68	0.88	4.70	2.5	0.003	0.48	0.0	0.04	13.81	0.00	2.354	5.86	0.22	1.8	98.2	0.0	3.84	0.22	0.70	0.90	4.29	8652	1128	10	0	4	0	0	logfile
✔	7MQF	23945	2023-02-24	2021-05-05	2.88	2.74	2.86	2.8	0.006	0.72	0.0	0.06	11.73	0.00	2.175	1.01	0.00	0.5	99.5	0.0	1.24	0.72	0.87	6.16	2.7	0.003	0.48	0.0	0.04	13.43	0.00	2.255	2.60	0.00	1.0	99.0	0.0	1.00	0.44	0.78	0.91	5.71	12288	1608	16	16	0	0	0	logfile
✔	7SFJ	25079	2023-02-18	2021-10-04	2.74	3.33	—	3.4	0.007	0.94	0.0	0.04	18.41	0.01	2.308	3.87	1.28	2.5	97.5	0.0	2.20	0.62	0.78	3.51	3.4	0.002	0.48	0.0	0.04	17.67	0.00	2.281	5.23	1.85	3.2	96.8	0.0	2.36	0.47	0.58	0.77	2.97	7377	852	9	0	24	3	0	logfile
✔	7XTZ	33453	2023-02-21	2022-05-18	2.8	2.99	2.73	2.9	0.012	0.86	0.0	0.05	13.31	0.00	2.204	0.77	0.42	3.2	96.8	0.0	-0.29	0.83	0.84	4.09	2.9	0.003	0.48	0.0	0.04	14.16	0.00	2.041	2.79	0.80	3.0	97.0	0.0	-0.04	0.30	0.83	0.86	3.83	51900	3291	21	0	75	0	25032	logfile
✔	7oJN	12956	2023-02-22	2021-05-16	2.92	3.27	2.89	2.9	0.004	0.41	0.0	0.04	9.23	0.00	1.859	3.51	0.93	4.7	95.2	0.1	0.93	0.88	0.83	3.05	3.0	0.003	0.48	0.0	0.04	12.90	0.00	2.095	5.50	1.53	5.0	95.0	0.0	0.73	2.62	0.91	0.90	3.01	16991	2010	6	39	7	0	0	logfile
✔	7LFX	23308	2023-02-21	2021-01-19	3.1	2.80	—	3.0	0.012	0.64	0.0	0.05	13.11	0.00	2.226	9.82	0.25	2.3	97.7	0.0	-1.18	0.64	0.81	2.40	3.0	0.002	0.48	0.0	0.04	15.75	0.00	2.269	13.28	0.31	3.3	96.7	0.0	1.06	0.81	0.65	0.85	2.46	14846	1800	8	0	6	0	0	logfile

• ← previous
• Page 4 of 353
• next →