Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NJV	12424	2022-04-05	2021-02-17	2.9	2.81	—	2.9	0.003	0.60	0.0	0.04	13.24	0.00	2.179	6.55	0.00	2.5	97.5	0.0	2.26	0.65	0.88	2.67	2.9	0.004	0.49	0.0	0.04	15.43	0.00	2.132	5.27	0.91	2.0	98.0	0.0	2.71	0.30	0.65	0.90	2.63	16463	1118	13	0	1	0	8337	logfile
✔	6PUZ	20485	2022-04-05	2019-07-18	2.8	3.10	2.87	3.1	0.008	0.87	0.0	0.05	19.45	0.01	0.000	5.85	0.19	2.2	97.8	0.0	-2.67	0.74	0.89	4.50	3.0	0.003	0.49	0.0	0.04	21.32	0.00	0.000	7.65	0.87	2.2	97.8	0.0	0.66	0.39	0.69	0.89	4.11	11702	1230	28	72	10	340	0	logfile
✔	6XKY	22229	2022-04-08	2020-06-27	3.2	3.13	3.17	3.2	0.006	0.55	0.0	0.03	10.04	0.00	1.588	4.66	0.48	1.5	98.5	0.0	2.67	0.52	0.87	2.05	3.2	0.004	0.49	0.0	0.03	14.28	0.00	2.145	4.55	0.33	1.9	98.1	0.0	3.67	0.50	0.53	0.89	1.91	38760	5420	20	0	0	0	0	logfile
✔	6U5S	20654	2022-04-08	2019-08-28	3.07	3.44	—	3.4	0.003	0.41	0.0	0.07	12.04	0.00	2.078	6.02	0.00	3.3	96.7	0.0	-3.21	0.81	0.80	4.41	3.3	0.005	0.49	0.0	0.04	13.55	0.00	2.091	7.11	0.00	4.2	95.8	0.0	-0.08	1.23	0.83	0.83	4.36	21461	1504	8	0	20	0	9755	logfile
✔	7KoD	22972	2022-04-06	2020-11-08	1.655	2.30	—	1.9	0.001	0.33	0.0	0.03	8.49	0.00	2.288	0.80	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	2.0	0.005	0.49	0.0	0.04	13.81	0.00	1.858	2.53	0.27	0.6	99.4	0.0	5.26	0.58	0.88	0.94	8.02	68186	4128	48	0	0	1727	32643	logfile
✔	7P54	13194	2022-04-04	2021-07-14	3.3	3.29	3.21	3.5	0.003	0.51	0.0	0.04	13.48	0.00	2.206	6.98	0.00	1.7	98.3	0.0	4.08	0.53	0.76	1.07	3.5	0.003	0.49	0.0	0.05	15.89	0.00	2.239	6.82	0.15	2.0	98.0	0.0	4.49	1.36	0.55	0.78	1.13	6248	794	8	0	12	0	0	logfile
✔	7LiA	23365	2022-04-04	2021-01-26	3.3	3.41	—	3.5	0.002	0.75	0.0	0.07	13.30	0.00	2.266	8.12	1.71	2.5	97.5	0.0	-2.33	0.63	0.77	2.53	3.4	0.002	0.49	0.0	0.04	14.63	0.00	2.125	9.38	0.16	4.5	95.5	0.0	0.18	0.49	0.69	0.81	3.12	6279	767	5	0	27	0	0	logfile
✔	7WHN	32505	2022-04-04	2021-12-31	3.3	2.99	—	3.2	0.009	0.80	0.0	0.05	13.81	0.01	2.147	7.64	0.10	4.5	95.5	0.0	-1.29	0.41	0.83	2.92	3.2	0.002	0.49	0.0	0.04	15.01	0.00	2.268	5.47	0.19	2.4	97.6	0.0	1.01	0.40	0.37	0.80	2.24	9284	1170	1	0	0	0	0	logfile
✔	7MSX	23971	2022-04-04	2021-05-12	3.15	3.24	3.04	3.2	0.008	0.62	0.0	0.05	10.30	0.00	2.385	0.81	0.00	1.9	98.1	0.0	0.06	0.77	0.85	3.76	3.2	0.003	0.49	0.0	0.04	15.13	0.00	2.210	5.29	0.49	2.1	97.9	0.0	1.21	1.12	0.79	0.87	3.16	3706	473	1	0	3	0	0	logfile
✔	7K0M	22602	2022-04-06	2020-09-04	2.9	3.38	—	3.3	0.005	0.69	0.0	0.04	12.85	0.00	2.218	4.70	0.00	2.3	97.7	0.0	1.05	0.62	0.79	3.49	3.3	0.003	0.49	0.0	0.04	15.09	0.00	2.231	5.00	1.09	2.4	97.6	0.0	1.32	0.38	0.63	0.80	3.14	18578	2342	14	0	16	0	0	logfile
✔	6WCB	21605	2022-04-05	2020-03-30	3.17	3.17	—	3.2	0.005	0.41	0.0	0.03	13.87	0.00	2.128	2.50	1.29	0.8	99.2	0.0	0.58	0.55	0.77	2.89	3.2	0.003	0.49	0.0	0.04	15.56	0.00	2.085	4.05	0.16	1.7	98.3	0.0	3.29	1.29	0.55	0.79	2.44	11647	734	6	0	7	40	5904	logfile
✔	7NYW	12656	2022-04-09	2021-03-23	3.1	3.76	3.13	3.2	0.003	0.50	0.0	0.04	18.04	0.00	1.891	6.07	0.00	3.7	96.3	0.0	1.43	0.83	0.79	1.86	3.2	0.003	0.49	0.0	0.04	18.54	0.00	1.855	6.50	0.08	3.6	96.4	0.0	2.00	0.47	0.84	0.83	1.82	48568	2795	18	104	6	0	23780	logfile
✔	7P0M	13148	2022-04-07	2021-06-30	2.75	3.51	2.75	2.7	0.002	0.44	0.0	0.04	16.31	0.00	1.800	7.42	1.88	1.7	98.3	0.0	1.65	0.95	0.88	2.52	2.8	0.002	0.49	0.0	0.04	16.49	0.00	2.005	8.75	2.07	1.7	98.3	0.0	1.67	0.24	0.96	0.89	2.22	25185	3185	19	0	45	0	0	logfile
✔	6WSG	21892	2022-04-10	2020-04-30	3.16	3.73	—	3.5	0.011	0.83	0.0	0.05	13.35	0.01	1.970	3.31	0.04	0.7	99.3	0.0	-1.08	0.76	0.73	3.52	3.5	0.004	0.50	0.0	0.04	14.85	0.00	1.784	6.59	0.11	2.9	97.1	0.0	0.96	0.63	0.76	0.81	3.03	52087	3334	26	0	9	7	26155	logfile
✔	7NJR	12412	2022-04-07	2021-02-17	2.56	2.54	—	2.4	0.004	0.52	0.0	0.04	14.46	0.00	1.940	5.25	0.00	3.0	96.9	0.1	1.36	0.85	0.87	4.22	2.4	0.003	0.50	0.0	0.04	15.67	0.00	1.761	5.49	0.60	2.8	97.2	0.1	1.75	0.88	0.86	0.89	3.97	74587	4930	31	0	11	16	37321	logfile
✔	7BKP	12213	2022-04-05	2021-01-16	2.8	2.78	2.75	2.9	0.009	0.84	0.0	0.05	12.30	0.00	1.824	2.22	0.32	6.5	93.2	0.3	-2.15	0.66	0.84	3.66	2.9	0.002	0.50	0.0	0.04	14.82	0.00	2.143	2.88	1.30	5.3	94.7	0.0	1.43	2.05	0.64	0.86	2.77	12118	689	4	28	3	0	5956	logfile
✔	6UZY	20964	2022-04-05	2019-11-15	3.38	3.52	—	3.5	0.012	1.10	7.0	0.07	15.17	0.01	2.265	6.91	0.00	2.6	97.4	0.0	-3.44	0.66	0.82	2.53	3.5	0.002	0.50	0.0	0.04	15.49	0.00	2.289	6.04	0.06	2.2	97.8	0.0	1.66	0.33	0.63	0.81	1.84	16212	1946	14	0	21	0	0	logfile
✔	7D4F	30572	2022-04-04	2020-09-23	2.57	2.76	—	2.7	0.012	0.95	0.0	0.06	13.57	0.01	1.326	5.95	0.76	2.2	97.8	0.0	-2.50	0.73	0.85	3.63	2.8	0.002	0.50	0.0	0.04	15.76	0.00	2.158	6.00	1.05	1.8	98.2	0.0	0.39	0.44	0.75	0.88	3.51	9534	1181	4	0	4	0	0	logfile
✔	7RHK	24464	2022-04-05	2021-07-17	3.27	2.87	—	3.1	0.010	0.76	0.0	0.05	14.48	0.00	2.260	6.48	0.00	2.8	97.2	0.0	0.46	0.63	0.83	1.80	3.1	0.002	0.50	0.0	0.04	15.87	0.00	2.195	10.89	0.19	2.5	97.5	0.0	1.87	0.30	0.63	0.86	1.99	14682	1776	8	0	5	0	0	logfile
✔	7SMR	25206	2022-04-06	2021-10-26	2.77	2.96	—	2.9	0.005	0.68	0.0	0.05	13.97	0.00	2.131	4.30	0.00	2.8	97.2	0.0	1.03	0.80	0.87	4.35	2.9	0.003	0.50	0.0	0.04	14.71	0.00	2.229	6.41	0.64	1.8	98.2	0.0	1.50	1.12	0.80	0.88	3.82	17037	2022	20	0	34	21	0	logfile

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