Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PA7	20281	2022-04-06	2019-06-11	2.94	3.31	—	3.1	0.005	0.80	0.0	0.05	23.66	0.01	2.304	3.72	0.00	3.1	96.9	0.0	-2.99	0.80	0.77	2.57	3.1	0.005	0.73	0.0	0.04	25.97	0.01	2.166	12.09	2.80	3.9	96.1	0.0	0.62	0.85	0.82	0.83	2.74	21019	1770	19	332	3	0	0	logfile
✔	6LZ1	30021	2022-04-08	2020-02-17	3.2	3.36	3.57	3.3	0.005	0.61	0.0	0.05	15.47	0.00	2.099	10.97	2.52	7.7	92.3	0.0	-3.40	0.87	0.86	3.56	3.3	0.003	0.57	0.0	0.04	16.17	0.00	2.063	10.22	0.26	6.2	93.8	0.0	-1.34	0.36	0.86	0.87	3.45	34492	4304	8	0	4	0	0	logfile
✔	6ZGG	11205	2022-04-07	2020-06-18	3.8	4.33	4.00	4.0	0.001	0.41	0.0	0.04	5.80	0.00	2.231	3.79	1.00	12.4	87.1	0.5	-2.52	0.84	0.74	0.73	4.0	0.004	0.68	0.0	0.04	11.53	0.00	2.149	9.56	0.11	4.9	95.1	0.0	-0.82	1.78	0.87	0.82	1.18	25096	3207	3	0	0	0	0	logfile
✔	6X3T	22032	2022-04-06	2020-05-21	2.55	2.18	2.60	2.5	0.004	0.61	0.0	0.04	13.07	0.00	2.171	5.94	2.28	3.0	97.0	0.0	-0.78	0.73	0.82	4.33	2.5	0.003	0.57	0.0	0.04	15.76	0.00	2.138	6.52	2.55	2.3	97.7	0.0	1.08	0.39	0.76	0.84	4.07	17415	2121	18	0	27	0	0	logfile
✔	6TFJ	10492	2022-04-09	2019-11-14	2.9	3.01	2.90	3.0	0.002	0.43	0.0	0.04	9.89	0.00	2.013	6.76	0.11	8.4	91.6	0.0	-2.53	0.70	0.73	2.51	3.0	0.003	0.56	0.0	0.04	14.94	0.00	1.962	9.16	1.53	7.1	92.9	0.1	-0.73	1.31	0.70	0.75	2.11	48340	3058	4	0	0	0	24098	logfile
✔	6TBU	10452	2022-04-05	2019-11-04	3.16	3.52	—	3.4	0.012	1.50	0.0	0.18	15.74	0.00	1.526	5.99	0.00	5.0	94.9	0.1	-1.99	0.72	0.80	3.61	3.4	0.003	0.71	0.0	0.15	16.40	0.00	2.041	11.12	0.41	4.5	95.5	0.0	1.51	1.12	0.70	0.83	3.46	13733	842	3	0	12	0	6645	logfile
✔	6VX6	21431	2022-04-05	2020-02-21	3.0	3.24	—	3.2	0.005	0.82	0.0	0.05	14.09	0.00	2.260	4.77	0.94	1.9	98.1	0.0	-5.69	0.76	0.87	3.72	3.2	0.004	0.64	0.0	0.04	16.34	0.00	2.054	7.91	1.57	1.5	98.5	0.0	0.59	0.98	0.78	0.89	3.36	15061	1830	10	0	6	0	0	logfile
✔	6M16	30038	2022-04-06	2020-02-24	2.83	2.92	—	2.9	0.010	1.03	0.0	0.07	10.43	0.01	1.146	5.17	0.36	7.5	92.4	0.1	-4.10	0.79	0.85	3.94	2.9	0.005	0.67	0.0	0.05	13.94	0.00	2.224	7.43	2.20	6.2	93.8	0.0	-1.04	1.18	0.80	0.87	3.10	23433	2895	18	0	60	0	0	logfile
✔	6WZG	21972	2022-04-04	2020-05-13	2.3	2.06	2.22	2.3	0.012	1.56	18.0	0.12	13.99	0.01	2.270	4.92	1.65	2.0	98.0	0.0	0.81	0.66	0.71	4.83	2.3	0.003	0.57	0.0	0.04	16.28	0.00	2.162	5.95	1.76	1.8	98.2	0.0	1.69	0.99	0.74	0.86	4.86	8939	1165	6	0	0	0	0	logfile
✔	6WTS	21898	2022-04-05	2020-05-03	3.3	3.77	—	3.8	0.002	0.48	0.0	0.04	11.63	0.00	2.272	5.08	0.41	3.9	96.0	0.1	-1.65	0.59	0.72	2.93	3.7	0.004	0.69	0.0	0.05	15.44	0.00	2.172	11.47	0.81	3.8	96.1	0.1	-0.75	0.59	0.49	0.79	2.48	9863	1287	8	0	10	0	0	logfile
✔	6WPS	21864	2022-04-07	2020-04-27	3.1	3.36	3.25	3.3	0.013	1.32	0.0	0.09	10.34	0.01	2.364	0.24	0.10	2.4	97.6	0.0	0.67	0.73	0.74	3.01	3.3	0.007	0.72	0.0	0.05	14.60	0.00	2.031	8.53	0.38	4.0	96.0	0.0	-0.25	1.66	0.78	0.82	3.05	28116	3540	27	0	75	0	0	logfile
✔	6VW2	21410	2022-04-04	2020-02-18	3.4	3.62	—	3.8	0.006	1.13	0.0	0.06	14.20	0.01	2.292	24.13	0.00	27.3	72.7	0.0	-4.46	0.42	0.71	2.71	3.9	0.005	0.96	0.0	0.05	14.94	0.00	2.171	15.12	0.95	19.5	80.5	0.0	-4.88	0.44	0.40	0.72	1.55	1800	240	10	0	0	0	0	logfile
✔	6WQK	21871	2022-04-04	2020-04-29	3.1	3.26	—	3.3	0.003	0.70	0.0	0.04	14.47	0.00	2.272	4.54	0.00	1.8	98.2	0.0	-5.40	0.48	0.84	4.99	3.3	0.004	0.72	0.0	0.05	13.47	0.00	2.242	4.54	0.00	4.4	95.6	0.0	-4.42	0.47	0.47	0.86	5.39	2070	285	5	0	0	0	0	logfile
✔	6YTo	10920	2022-04-09	2020-04-24	4.24	4.32	4.19	4.3	0.005	0.70	0.0	0.04	13.41	0.00	2.282	10.16	0.00	1.9	98.1	0.0	-0.08	0.67	0.83	—	4.3	0.003	0.63	0.0	0.04	13.55	0.00	2.010	9.02	0.06	2.6	97.4	0.0	2.79	0.73	0.67	0.82	—	41620	5340	20	0	0	0	0	logfile
✔	6RYU	10059	2022-04-06	2019-06-12	4.0	4.17	4.06	4.0	0.006	1.06	2.0	0.06	22.93	0.01	2.263	6.52	1.64	5.8	94.2	0.0	-5.25	0.86	0.79	—	4.0	0.006	0.85	0.0	0.04	24.18	0.00	1.983	15.24	0.27	5.9	94.1	0.0	-1.23	1.32	0.86	0.80	—	23598	2156	14	298	32	0	0	logfile
✔	6LRQ	0958	2022-04-04	2020-01-16	3.49	3.59	—	4.0	0.009	0.85	0.0	0.05	11.88	0.00	2.205	20.30	0.00	14.8	85.2	0.0	-4.51	0.46	0.71	1.87	4.1	0.006	0.85	0.0	0.05	14.46	0.00	2.147	19.93	0.74	12.8	87.2	0.0	-3.04	1.58	0.46	0.71	1.16	2628	378	6	0	0	0	0	logfile
✔	6UVA	20906	2022-04-04	2019-11-01	2.3	2.12	2.31	2.2	0.002	0.55	0.0	0.04	18.07	0.00	2.207	6.60	3.36	3.2	96.8	0.0	-2.29	0.63	0.72	2.83	2.3	0.003	0.61	0.0	0.04	18.40	0.00	2.158	8.08	3.55	4.4	95.6	0.0	0.30	1.31	0.66	0.78	2.82	9561	1199	7	0	0	0	0	logfile
✔	6T7A	10391	2022-04-05	2019-10-21	3.7	4.20	3.60	3.7	0.006	0.87	0.0	0.05	25.96	0.01	0.733	6.61	0.00	1.8	98.1	0.1	-3.03	0.85	0.81	1.66	3.7	0.005	0.75	0.0	0.04	26.72	0.00	2.144	15.79	0.47	1.9	98.1	0.0	2.15	1.75	0.87	0.85	1.33	10338	847	11	190	0	0	0	logfile
✔	6T7C	10393	2022-04-05	2019-10-21	4.0	4.27	3.92	3.8	0.008	0.88	1.0	0.05	25.90	0.01	2.081	7.85	0.00	1.7	98.2	0.1	-2.97	0.84	0.80	—	3.9	0.005	0.80	0.0	0.04	26.45	0.00	2.043	17.70	1.09	2.9	97.1	0.0	1.75	1.35	0.86	0.83	—	10606	917	12	190	0	0	0	logfile
✔	6UDQ	20743	2022-04-08	2019-09-19	3.27	3.39	3.21	3.5	0.014	1.19	1.0	0.06	14.70	0.01	2.239	4.98	1.09	6.0	94.0	0.0	-3.91	0.64	0.86	3.74	3.5	0.003	0.65	0.0	0.04	15.95	0.00	2.133	10.26	0.47	3.8	96.2	0.0	-0.55	1.53	0.59	0.86	2.55	31008	3956	20	0	32	0	0	logfile

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