Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PoM	20416	2023-02-17	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	17.29	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	5.0	0.010	1.28	0.0	0.06	21.46	0.01	1.930	61.80	0.00	0.0	0.0	0.0	—	1.76	0.75	0.80	—	4937	0	2	230	0	0	0	logfile
✔	7EGK	31135	2023-02-19	2021-03-24	2.7	2.79	2.60	2.7	0.008	0.97	0.0	0.05	14.76	0.01	2.240	2.92	8.02	3.2	96.5	0.2	-5.67	0.74	0.87	3.24	2.7	0.003	0.65	0.0	0.04	16.50	0.00	2.213	6.00	1.84	2.8	97.2	0.0	0.97	1.21	0.72	0.88	2.11	9894	1317	12	0	6	0	0	logfile
✔	7K5K	22682	2023-02-24	2020-09-17	2.66	2.76	2.81	2.7	0.007	0.69	0.0	0.05	15.27	0.00	1.722	6.95	4.06	10.2	89.7	0.0	-3.21	0.79	0.85	4.74	2.7	0.005	0.64	0.0	0.05	15.74	0.00	1.999	6.63	2.58	7.6	92.4	0.0	-1.06	0.32	0.80	0.87	4.16	24224	3270	12	0	18	0	0	logfile
✔	6ZB4	11144	2023-02-25	2020-06-06	3.03	3.12	3.02	3.1	0.006	0.67	0.0	0.05	15.92	0.01	1.814	4.85	3.84	8.2	91.7	0.1	-4.11	0.75	0.83	3.79	3.1	0.006	0.70	0.0	0.05	16.31	0.01	2.115	3.61	0.33	8.6	91.4	0.0	-1.98	1.86	0.78	0.87	3.73	24841	3133	7	0	30	0	0	logfile
✔	7SWo	25477	2023-02-17	2021-11-20	4.1	3.78	—	3.8	0.007	0.89	0.0	0.05	14.43	0.01	2.215	26.02	0.19	10.0	90.0	0.0	-2.59	0.65	0.76	—	3.8	0.003	0.72	0.0	0.05	13.81	0.01	2.118	18.05	0.00	6.0	94.0	0.0	-1.25	0.53	0.64	0.74	—	4784	627	3	0	0	0	0	logfile
✔	7BW4	30226	2023-02-18	2020-04-13	3.7	3.92	—	3.8	0.004	0.66	1.0	0.05	15.16	0.00	2.078	16.25	1.68	4.3	95.5	0.2	-2.50	0.77	0.77	1.82	3.8	0.003	0.74	0.0	0.05	16.62	0.00	2.197	15.13	0.53	4.8	95.1	0.1	-1.02	1.36	0.77	0.77	1.41	8605	1078	5	0	2	0	0	logfile
✔	7PKo	13474	2023-02-23	2021-08-26	3.9	4.01	—	3.9	0.004	0.66	0.0	0.04	14.59	0.00	2.205	10.80	0.00	7.5	92.5	0.0	-4.16	0.76	0.82	2.59	3.9	0.003	0.65	0.0	0.04	16.06	0.00	2.180	12.19	0.62	5.6	94.4	0.0	-0.75	0.64	0.75	0.81	2.41	20368	2504	8	0	0	0	0	logfile
✔	7M99	23720	2023-02-22	2021-03-30	3.2	2.95	3.12	3.2	0.014	1.53	0.0	0.10	16.60	0.01	1.823	7.28	0.45	1.8	98.2	0.0	-0.49	0.52	0.69	1.97	3.2	0.006	0.68	0.0	0.04	19.31	0.01	1.836	6.97	0.33	3.9	96.1	0.0	0.53	2.05	0.60	0.83	2.41	17613	2056	17	42	14	0	0	logfile
✔	7Lo6	23462	2023-02-22	2021-02-09	3.9	4.03	—	3.8	0.011	0.94	0.0	0.07	13.81	0.01	1.951	19.52	0.64	12.9	87.1	0.0	-5.44	0.85	0.85	2.14	3.8	0.004	0.72	0.0	0.05	15.31	0.00	2.095	11.93	0.69	6.1	93.9	0.0	-2.21	1.66	0.85	0.85	1.65	18006	2198	27	0	62	0	0	logfile
✔	7XZX	33533	2023-02-23	2022-06-03	4.53	5.42	4.49	4.5	0.006	0.99	0.0	0.06	25.64	0.00	1.688	10.77	0.15	1.7	98.3	0.0	0.69	0.69	0.37	—	4.4	0.004	0.65	0.0	0.04	25.63	0.00	2.095	14.00	0.00	2.6	97.4	0.0	1.09	1.71	0.90	0.82	—	19270	1554	14	342	0	0	0	logfile
✔	7VPZ	32077	2023-02-27	2021-10-18	4.14	4.38	4.16	4.1	0.005	0.79	1.0	0.05	18.57	0.00	1.887	6.54	0.52	3.6	96.3	0.0	-0.02	0.81	0.71	—	4.2	0.003	0.69	0.0	0.04	18.61	0.00	1.968	17.15	0.00	3.2	96.8	0.0	-0.08	0.71	0.83	0.75	—	30593	3474	14	173	9	0	0	logfile
✔	6JMQ	9849	2023-02-19	2019-03-13	3.31	3.52	3.25	3.5	0.005	0.95	0.0	0.05	14.01	0.01	2.293	3.84	0.29	4.3	95.6	0.1	-5.09	0.71	0.79	2.84	3.5	0.004	0.71	0.0	0.04	15.56	0.00	2.049	8.75	0.29	4.5	95.5	0.0	-1.48	1.46	0.74	0.83	2.73	9950	1223	7	0	74	0	0	logfile
✔	6CG0	7470	2023-02-23	2018-02-19	3.17	3.69	—	3.3	0.003	0.60	0.0	0.04	20.01	0.00	2.205	15.24	4.08	2.5	97.4	0.1	-2.47	0.91	0.85	3.15	3.3	0.002	0.54	0.0	0.04	20.27	0.00	2.134	7.49	0.35	2.1	97.9	0.0	0.58	0.52	0.93	0.88	2.73	20080	1989	13	212	4	0	0	logfile
✔	8A5o	15179	2023-02-20	2022-06-15	3.2	3.27	3.09	3.2	0.016	1.87	2.0	0.10	14.05	0.01	1.981	1.08	0.72	3.8	96.0	0.2	-1.14	0.70	0.80	3.54	3.2	0.003	0.55	0.0	0.04	16.37	0.00	2.042	5.80	0.29	2.0	97.9	0.1	1.08	1.66	0.81	0.86	2.49	12571	1555	8	0	6	0	0	logfile
✔	6K9L	9950	2023-02-27	2019-06-16	4.27	4.50	—	4.2	0.001	0.49	0.0	0.04	9.31	0.00	2.240	4.75	4.95	4.6	95.4	0.0	-3.11	0.84	0.71	—	4.2	0.002	0.68	0.0	0.04	9.69	0.00	2.113	12.20	0.00	7.1	92.9	0.0	0.72	1.80	0.85	0.75	—	30601	5103	2	0	0	0	0	logfile
✔	6T8o	10402	2023-02-22	2019-10-24	3.99	4.07	—	4.0	0.006	0.91	0.0	0.05	12.50	0.01	2.270	4.39	0.20	5.8	94.2	0.0	-4.05	0.79	0.82	1.99	4.0	0.004	0.75	0.0	0.05	16.30	0.00	2.091	13.45	0.65	5.1	94.9	0.0	-0.43	1.34	0.80	0.83	1.40	18806	2374	14	26	6	0	0	logfile
✔	7ECW	31059	2023-02-24	2021-03-13	3.1	3.18	—	3.2	0.007	0.89	1.0	0.06	16.81	0.01	1.950	7.43	1.10	6.1	93.8	0.1	-3.73	0.75	0.82	2.64	3.2	0.002	0.54	0.0	0.04	17.52	0.00	2.221	6.10	0.14	5.2	94.8	0.0	-0.27	1.22	0.76	0.84	2.08	23089	2934	13	70	0	0	0	logfile
✔	6Bo9	7121	2023-02-23	2017-11-18	4.0	4.05	—	4.0	0.007	1.17	0.0	0.06	10.85	0.01	2.245	8.51	0.97	12.1	87.9	0.0	-4.34	0.59	0.59	—	4.0	0.004	0.95	0.0	0.05	16.76	0.00	2.120	17.02	0.97	9.8	90.2	0.0	-1.02	1.59	0.76	0.78	—	19048	2372	4	0	0	0	0	logfile
✔	3J8A	6124	2023-02-21	2014-10-08	3.7	3.90	—	3.8	0.006	1.27	0.0	0.05	14.88	0.01	2.145	19.64	6.28	11.2	87.4	1.4	-5.31	0.73	0.80	2.48	3.8	0.003	0.84	0.0	0.05	16.36	0.00	1.960	13.80	0.71	5.1	94.0	0.8	-2.15	0.52	0.72	0.82	1.56	15800	1835	12	0	280	0	0	logfile
✔	6GKH	0023	2023-02-19	2018-05-21	4.06	4.18	3.92	4.1	0.006	1.49	0.0	0.05	9.62	0.00	1.641	13.64	0.00	10.0	90.0	0.0	-4.26	0.61	0.79	—	4.1	0.004	1.06	0.0	0.04	12.18	0.00	1.774	25.31	0.16	10.2	89.8	0.0	-1.11	1.88	0.61	0.81	—	10587	685	4	30	4	0	4399	logfile

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