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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6oFJ | 20047 | 2022-04-05 | 2019-03-30 | 4.5 | 5.60 | 3.27 | 7.8 | 0.007 | 0.96 | 0.0 | 0.05 | 15.74 | 0.01 | 2.135 | 3.69 | 0.00 | 7.1 | 92.9 | 0.0 | -4.36 | 0.48 | 0.33 | — | 7.8 | 0.002 | 0.57 | 0.0 | 0.04 | 14.05 | 0.00 | 1.989 | 9.42 | 0.00 | 8.0 | 92.0 | 0.0 | -2.00 | 1.40 | 0.55 | 0.54 | — | 10310 | 650 | 2 | 0 | 0 | 0 | 5142 | logfile |
✔ | 7K8A | 22724 | 2022-04-05 | 2020-09-26 | 3.65 | 3.57 | — | 3.7 | 0.004 | 0.92 | 1.0 | 0.05 | 13.38 | 0.01 | 2.226 | 16.00 | 0.17 | 6.4 | 93.6 | 0.0 | -1.30 | 0.40 | 0.55 | 0.67 | 3.7 | 0.004 | 0.85 | 0.0 | 0.04 | 15.78 | 0.01 | 2.217 | 13.68 | 0.51 | 4.3 | 95.7 | 0.0 | -0.51 | 0.48 | 0.41 | 0.54 | 0.25 | 5513 | 723 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 3LoS | 5137 | 2022-04-05 | 2010-02-04 | 4.3 | 2.98 | — | 3.0 | 0.008 | 2.44 | 224.0 | 0.19 | 19.87 | 0.01 | 2.259 | 88.10 | 23.89 | 17.4 | 68.9 | 13.8 | -6.57 | 0.57 | 0.49 | — | 3.2 | 0.007 | 1.33 | 0.0 | 0.05 | 16.09 | 0.01 | 1.037 | 31.38 | 0.00 | 20.2 | 75.6 | 4.2 | -4.47 | 1.32 | 0.62 | 0.54 | — | 63712 | 8512 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XAS | 22114 | 2022-04-09 | 2020-06-04 | 3.8 | 3.01 | 3.14 | 2.9 | 0.002 | 0.49 | 0.0 | 0.04 | 10.96 | 0.00 | 1.961 | 4.92 | 1.49 | 2.2 | 97.8 | 0.0 | -2.00 | 0.62 | 0.55 | 1.72 | 3.0 | 0.004 | 0.65 | 0.0 | 0.04 | 14.63 | 0.00 | 1.805 | 9.25 | 0.20 | 4.4 | 95.6 | 0.0 | -0.24 | 0.76 | 0.61 | 0.54 | 1.64 | 46887 | 5804 | 16 | 73 | 3 | 0 | 0 | logfile |
✔ | 6CS1 | 7579 | 2022-04-07 | 2018-03-19 | 4.6 | 4.79 | 4.84 | 6.8 | 0.005 | 0.85 | 0.0 | 0.05 | 8.80 | 0.01 | 2.229 | 7.26 | 0.00 | 7.2 | 92.8 | 0.0 | -4.20 | 0.61 | 0.31 | — | 4.5 | 0.003 | 0.70 | 0.0 | 0.05 | 11.19 | 0.00 | 2.114 | 17.45 | 0.00 | 6.0 | 94.0 | 0.0 | -2.14 | 1.73 | 0.70 | 0.54 | — | 25995 | 3202 | 6 | 0 | 75 | 0 | 0 | logfile |
✔ | 6HD5 | 0201 | 2022-04-04 | 2018-08-17 | 4.8 | 6.01 | — | 5.9 | 0.001 | 0.40 | 0.0 | 0.03 | 8.70 | 0.00 | 2.289 | 4.36 | 0.10 | 10.5 | 88.4 | 1.1 | -1.81 | 0.36 | 0.32 | — | 5.9 | 0.003 | 0.73 | 0.0 | 0.04 | 11.96 | 0.00 | 2.138 | 15.18 | 0.00 | 5.4 | 94.5 | 0.1 | -0.09 | 2.01 | 0.45 | 0.55 | — | 9707 | 1234 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6G90 | 4364 | 2022-04-05 | 2018-04-10 | 4.0 | 4.12 | — | 3.9 | 0.009 | 1.30 | 2.0 | 0.07 | 12.62 | 0.03 | 1.687 | 18.96 | 0.57 | 7.8 | 91.4 | 0.8 | -3.55 | 0.51 | 0.41 | — | 3.9 | 0.007 | 0.99 | 1.0 | 0.04 | 14.90 | 0.01 | 1.984 | 18.95 | 0.09 | 6.4 | 93.2 | 0.3 | -0.64 | 3.66 | 0.57 | 0.55 | — | 65050 | 6796 | 43 | 474 | 223 | 0 | 0 | logfile |
✔ | 6CRZ | 7577 | 2022-04-07 | 2018-03-19 | 3.3 | 3.42 | 3.35 | 4.5 | 0.007 | 0.96 | 0.0 | 0.06 | 9.21 | 0.01 | 2.254 | 6.75 | 0.04 | 7.8 | 92.2 | 0.0 | -4.10 | 0.39 | 0.17 | 0.01 | 3.4 | 0.007 | 0.94 | 0.0 | 0.05 | 13.56 | 0.01 | 2.084 | 15.45 | 0.61 | 7.1 | 92.9 | 0.1 | -2.19 | 1.45 | 0.59 | 0.55 | 0.91 | 25909 | 3205 | 6 | 0 | 66 | 0 | 0 | logfile |
✔ | 7LF0 | 23296 | 2022-04-08 | 2021-01-15 | 3.68 | 2.09 | 3.76 | 3.7 | 0.008 | 1.10 | 0.0 | 0.06 | 10.18 | 0.01 | 2.157 | 7.30 | 1.09 | 11.4 | 87.8 | 0.8 | -4.41 | 0.51 | 0.54 | 1.30 | 3.6 | 0.007 | 1.00 | 0.0 | 0.05 | 14.82 | 0.01 | 2.054 | 21.09 | 0.57 | 13.0 | 86.8 | 0.2 | -2.82 | 0.95 | 0.52 | 0.55 | 1.18 | 34548 | 4542 | 18 | 0 | 0 | 0 | 0 | logfile |
✔ | 6B3R | 7042 | 2022-04-08 | 2017-09-22 | 3.8 | 3.79 | — | 3.8 | 0.006 | 1.04 | 0.0 | 0.06 | 10.17 | 0.01 | 2.247 | 4.81 | 0.25 | 8.1 | 91.9 | 0.0 | -4.41 | 0.35 | 0.53 | 1.24 | 3.8 | 0.013 | 1.32 | 4.0 | 0.04 | 15.45 | 0.01 | 1.532 | 15.11 | 0.14 | 7.0 | 92.9 | 0.0 | -0.32 | 0.97 | 0.39 | 0.55 | 1.23 | 35718 | 4506 | 6 | 0 | 48 | 0 | 0 | logfile |
✔ | 6RAX | 4786 | 2022-04-09 | 2019-04-08 | 3.99 | 4.07 | 3.97 | 4.1 | 0.011 | 1.46 | 27.0 | 0.13 | 18.03 | 0.01 | 1.308 | 23.90 | 6.70 | 19.2 | 80.3 | 0.5 | -5.61 | 0.55 | 0.58 | 0.25 | 4.0 | 0.006 | 0.87 | 0.0 | 0.04 | 18.40 | 0.01 | 2.102 | 15.47 | 0.72 | 11.8 | 88.2 | 0.0 | -3.06 | 1.49 | 0.57 | 0.55 | 0.36 | 40970 | 5062 | 19 | 29 | 6 | 0 | 0 | logfile |
✔ | 6XoW | 22282 | 2022-04-04 | 2020-07-07 | 4.6 | 8.17 | 4.40 | 7.0 | 0.006 | 1.00 | 0.0 | 0.05 | 13.43 | 0.01 | 1.991 | 24.14 | 0.23 | 4.2 | 95.8 | 0.0 | -0.98 | 0.87 | 0.72 | — | 7.0 | 0.003 | 0.76 | 0.0 | 0.04 | 13.40 | 0.01 | 2.106 | 24.59 | 0.23 | 3.7 | 96.3 | 0.0 | 0.29 | 0.80 | 0.86 | 0.56 | — | 7711 | 966 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7EGA | 31110 | 2022-04-08 | 2021-03-24 | 4.1 | 4.55 | — | 4.1 | 0.008 | 1.08 | 35.0 | 0.07 | 16.87 | 0.01 | 1.445 | 18.65 | 3.89 | 6.5 | 93.1 | 0.4 | -3.75 | 0.60 | 0.28 | — | 3.9 | 0.005 | 0.77 | 0.0 | 0.04 | 15.63 | 0.00 | 1.863 | 18.18 | 0.00 | 6.3 | 93.6 | 0.1 | -0.76 | 1.41 | 0.75 | 0.56 | — | 85697 | 10273 | 49 | 170 | 11 | 0 | 0 | logfile |
✔ | 6QG2 | 4545 | 2022-04-08 | 2019-01-10 | 4.55 | 4.79 | 4.48 | 4.5 | 0.009 | 1.44 | 35.0 | 0.09 | 18.65 | 0.00 | 1.236 | 4.68 | 7.64 | 13.2 | 83.4 | 3.4 | -1.88 | 0.58 | 0.37 | — | 4.5 | 0.003 | 0.75 | 0.0 | 0.05 | 15.45 | 0.00 | 2.126 | 17.21 | 0.00 | 10.5 | 88.9 | 0.6 | -1.87 | 1.68 | 0.69 | 0.56 | — | 38664 | 4961 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7U10 | 26273 | 2022-04-04 | 2022-02-19 | 3.0 | 3.45 | — | 4.3 | 0.003 | 0.57 | 0.0 | 0.05 | 15.69 | 0.00 | 2.230 | 10.70 | 0.00 | 6.8 | 93.2 | 0.0 | -2.82 | 0.37 | 0.64 | 3.73 | 4.2 | 0.004 | 0.66 | 0.0 | 0.07 | 18.06 | 0.01 | 2.203 | 12.01 | 3.17 | 7.3 | 92.7 | 0.0 | -3.34 | 2.75 | 0.21 | 0.56 | 3.09 | 3429 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 5X59 | 6704 | 2022-04-07 | 2017-02-15 | 3.7 | 3.77 | — | 3.7 | 0.011 | 1.65 | 0.0 | 0.08 | 14.81 | 0.01 | 1.477 | 23.24 | 4.97 | 13.2 | 85.4 | 1.3 | -3.87 | 0.48 | 0.41 | 0.15 | 3.7 | 0.011 | 1.41 | 1.0 | 0.05 | 15.52 | 0.01 | 1.647 | 29.17 | 0.27 | 13.3 | 86.4 | 0.3 | -2.68 | 0.93 | 0.55 | 0.56 | 0.87 | 26838 | 3423 | 6 | 0 | 30 | 0 | 0 | logfile |
✔ | 5LKH | 4068 | 2022-04-08 | 2016-07-22 | 3.46 | 5.27 | — | 11.0 | 0.018 | 2.37 | 65.0 | 0.12 | 12.66 | 0.02 | 2.255 | 87.10 | 1.96 | 3.4 | 95.2 | 1.4 | -0.27 | 0.38 | 0.17 | -0.03 | 8.8 | 0.004 | 0.83 | 0.0 | 0.04 | 15.55 | 0.01 | 2.085 | 26.43 | 0.22 | 6.6 | 93.4 | 0.0 | -0.75 | 2.06 | 0.50 | 0.56 | 0.33 | 37345 | 4740 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 5Li4 | 4052 | 2022-04-06 | 2016-07-14 | 4.2 | 5.13 | — | 4.0 | 0.053 | 3.06 | 114.0 | 0.34 | 14.44 | 0.02 | 0.111 | 93.15 | 2.94 | 14.0 | 79.1 | 6.9 | -4.32 | 0.24 | 0.30 | — | 4.4 | 0.004 | 1.02 | 0.0 | 0.05 | 13.71 | 0.01 | 2.118 | 26.65 | 0.00 | 14.0 | 85.0 | 1.0 | -3.83 | 4.19 | 0.34 | 0.57 | — | 20070 | 2562 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZD0 | 11172 | 2022-04-04 | 2020-06-13 | 4.6 | 4.62 | 2.80 | 3.7 | 0.004 | 0.91 | 0.0 | 0.05 | 7.55 | 0.00 | 2.207 | 10.05 | 0.00 | 10.1 | 89.8 | 0.1 | -4.73 | 0.59 | 0.58 | — | 4.3 | 0.003 | 0.74 | 0.0 | 0.04 | 5.33 | 0.00 | 2.199 | 10.22 | 0.00 | 19.5 | 80.1 | 0.4 | -4.32 | 2.53 | 0.59 | 0.57 | — | 7962 | 1611 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RAY | 4787 | 2022-04-09 | 2019-04-08 | 4.28 | 4.39 | 4.31 | 4.4 | 0.013 | 1.77 | 39.0 | 0.16 | 18.46 | 0.02 | 1.031 | 19.77 | 7.45 | 17.4 | 81.8 | 0.8 | -5.68 | 0.58 | 0.59 | — | 4.3 | 0.005 | 0.85 | 0.0 | 0.04 | 15.24 | 0.00 | 2.082 | 15.65 | 0.09 | 11.4 | 88.5 | 0.1 | -3.33 | 1.14 | 0.60 | 0.57 | — | 39071 | 4887 | 18 | 13 | 6 | 0 | 0 | logfile |