Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8D6X	27225	2023-02-27	2022-06-06	3.2	10.22	—	—	0.003	0.62	0.0	0.04	12.14	0.00	2.195	17.76	0.06	2.6	97.4	0.0	1.17	0.70	0.42	0.14	—	0.003	0.68	0.0	0.04	14.52	0.00	2.006	31.08	0.17	4.9	95.1	0.0	0.20	4.65	0.78	0.54	0.09	68362	8957	41	0	0	0	0	logfile
✔	7URM	26714	2023-02-16	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	23.67	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.16	0.0	0.05	22.87	0.01	1.983	29.94	0.00	0.0	0.0	0.0	—	1.70	0.15	0.54	—	1905	0	1	90	0	0	0	logfile
✔	7WGC	32483	2023-02-17	2021-12-28	3.6	3.85	—	3.8	0.003	0.62	0.0	0.04	14.73	0.00	2.191	10.26	0.00	3.8	96.2	0.0	-0.11	0.56	0.55	1.21	3.8	0.003	0.64	0.0	0.04	16.12	0.00	2.172	11.75	0.00	4.3	95.7	0.0	0.17	0.38	0.56	0.55	1.00	6527	795	4	0	5	0	0	logfile
✔	7UBB	26437	2023-02-18	2022-03-14	4.5	5.42	4.95	5.3	0.002	0.68	0.0	0.04	14.32	0.00	2.231	14.38	0.00	0.9	99.1	0.0	-1.04	0.40	0.59	—	5.3	0.002	0.62	0.0	0.04	13.88	0.00	2.170	12.64	1.01	2.7	97.3	0.0	-1.17	1.94	0.37	0.55	—	7448	896	8	0	0	0	0	logfile
✔	7K8A	22724	2023-02-19	2020-09-26	3.65	3.57	—	3.7	0.004	0.92	1.0	0.05	13.38	0.01	2.226	16.09	0.17	6.4	93.6	0.0	-1.30	0.40	0.55	0.67	3.7	0.003	0.78	0.0	0.04	15.86	0.01	2.225	15.74	0.34	4.6	95.3	0.1	-0.56	0.46	0.42	0.55	0.22	5513	723	1	0	0	0	0	logfile
✔	7WoG	32651	2023-02-17	2022-01-21	4.06	2.95	—	2.0	0.001	0.41	0.0	0.04	8.09	0.00	2.293	10.22	3.78	8.0	92.0	0.0	-3.98	0.51	0.51	—	2.2	0.003	0.71	0.0	0.04	10.94	0.00	2.020	21.35	0.00	13.1	86.9	0.0	-2.59	1.02	0.54	0.55	—	3362	433	3	0	0	0	0	logfile
✔	6HD5	0201	2023-02-19	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.004	0.81	0.0	0.04	11.92	0.01	2.072	21.78	0.00	6.4	93.5	0.1	-0.40	2.04	0.46	0.56	—	9707	1234	3	0	0	0	0	logfile
✔	7U13	26276	2023-02-17	2022-02-19	2.9	3.67	—	4.2	0.017	2.41	0.0	0.07	17.78	0.01	2.120	29.95	6.30	11.3	88.0	0.8	-3.06	0.30	0.47	1.37	4.2	0.005	0.96	0.0	0.06	18.45	0.00	2.194	14.61	3.67	12.3	87.7	0.0	-4.21	6.72	0.33	0.56	1.63	3456	405	6	0	12	0	0	logfile
✔	7UWK	26834	2023-02-21	2022-05-03	4.4	3.30	4.35	2.2	0.004	0.80	0.0	0.05	12.35	0.01	2.131	17.98	0.11	5.0	95.0	0.0	-1.76	0.66	0.54	—	2.3	0.005	0.80	0.0	0.05	12.71	0.01	2.083	22.17	0.11	7.5	92.5	0.0	-2.04	1.87	0.66	0.57	—	16064	2059	12	0	0	0	0	logfile
✔	6ZFo	11184	2023-02-22	2020-06-17	4.4	4.43	—	4.4	0.003	0.55	0.0	0.04	10.40	0.00	2.157	3.58	1.30	4.5	95.5	0.0	-0.66	0.49	0.51	—	4.4	0.003	0.62	0.0	0.04	11.48	0.00	1.947	12.09	0.00	6.6	93.4	0.0	-1.08	1.58	0.52	0.57	—	18988	1252	8	0	2	0	9310	logfile
✔	7V4J	31713	2023-02-19	2021-08-13	3.5	3.64	—	3.8	0.003	0.67	0.0	0.05	13.95	0.01	2.092	19.96	0.00	8.2	91.8	0.0	-1.60	0.61	0.52	1.21	3.8	0.003	0.73	0.0	0.05	16.29	0.01	2.111	19.55	0.28	6.6	93.4	0.0	-1.29	0.74	0.62	0.57	1.18	9850	1275	5	0	0	0	0	logfile
✔	7U12	26275	2023-02-17	2022-02-19	3.5	3.59	—	4.4	0.011	1.02	0.0	0.07	16.79	0.01	2.160	20.06	5.51	8.0	92.0	0.0	-3.00	0.29	0.45	2.77	4.3	0.005	0.91	0.0	0.06	15.76	0.00	2.056	17.29	0.26	11.8	88.2	0.0	-3.89	2.91	0.34	0.57	2.15	3456	405	6	0	12	0	0	logfile
✔	7NiU	12365	2023-02-21	2021-02-14	4.2	3.68	—	3.5	0.008	1.01	0.0	0.05	15.90	0.01	2.110	34.12	1.67	14.7	85.0	0.2	-5.18	0.57	0.58	—	3.5	0.003	0.69	0.0	0.04	14.73	0.00	2.133	14.44	0.18	5.9	94.1	0.0	-1.65	1.64	0.57	0.57	—	15495	2015	6	0	2	0	0	logfile
✔	6G90	4364	2023-02-24	2018-04-10	4.0	4.12	—	3.9	0.009	1.30	2.0	0.07	12.73	0.03	1.687	18.99	0.57	7.8	91.4	0.8	-3.55	0.51	0.41	—	3.9	0.003	0.90	0.0	0.04	15.20	0.01	2.102	17.67	0.21	7.5	92.2	0.3	-0.80	3.85	0.58	0.57	—	65050	6796	43	474	223	0	0	logfile
✔	7ZPJ	14855	2023-02-24	2022-04-27	3.81	3.24	3.86	6.5	0.004	0.86	0.0	0.05	13.19	0.01	2.159	2.94	0.67	3.3	96.7	0.0	0.22	0.54	0.33	0.15	2.1	0.004	0.69	0.0	0.04	15.40	0.01	1.881	14.65	0.75	4.9	95.1	0.0	-0.12	1.51	0.64	0.57	0.39	23479	1355	3	55	0	0	11508	logfile
✔	6Q2N	20575	2023-02-20	2019-08-08	4.4	4.43	—	4.3	0.008	1.24	0.0	0.06	9.78	0.01	1.449	11.01	0.68	9.6	90.2	0.2	-4.25	0.60	0.56	—	4.3	0.004	0.81	0.0	0.05	11.58	0.01	2.192	17.37	0.00	9.9	90.1	0.0	-2.55	0.96	0.61	0.58	—	13140	1678	8	0	8	0	0	logfile
✔	6ZD0	11172	2023-02-18	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	10.05	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	4.5	0.003	0.78	0.0	0.04	5.38	0.00	2.341	5.89	0.00	15.0	84.6	0.4	-4.68	2.32	0.61	0.58	—	7962	1611	6	0	0	0	0	logfile
✔	6CRZ	7577	2023-02-25	2018-03-19	3.3	3.42	3.35	4.5	0.007	0.96	0.0	0.06	9.21	0.01	2.254	6.77	0.04	7.8	92.2	0.0	-4.10	0.39	0.17	0.01	3.4	0.007	1.08	0.0	0.06	13.63	0.01	2.021	20.82	0.54	9.3	90.5	0.1	-2.67	1.61	0.61	0.58	0.77	25909	3205	25	0	66	0	0	logfile
✔	7BZX	30262	2023-02-17	2020-04-28	4.0	4.19	—	3.2	0.019	2.22	9.0	0.12	8.56	0.01	2.485	2.40	0.00	6.6	92.1	1.3	-2.90	0.47	0.25	—	2.8	0.006	1.18	0.0	0.05	9.20	0.01	2.035	27.91	0.00	24.1	75.8	0.1	-4.93	2.97	0.75	0.58	—	5652	1154	2	0	0	0	0	logfile
✔	7NCJ	12268	2023-02-19	2021-01-28	4.23	3.11	3.97	4.5	0.011	1.60	2.0	0.10	13.68	0.01	2.444	0.18	0.76	7.7	92.0	0.3	-2.36	0.65	0.46	—	4.5	0.003	0.60	1.0	0.05	13.98	0.00	1.897	13.84	0.00	11.2	88.8	0.0	-2.88	1.39	0.69	0.58	—	10860	774	12	0	0	0	5586	logfile

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