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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8DRo | 27679 | 2023-07-04 | 2022-07-21 | 4.06 | 4.13 | 4.38 | 4.1 | 0.004 | 0.96 | 0.0 | 0.05 | 15.27 | 0.01 | 2.265 | 14.83 | 0.40 | 7.3 | 92.7 | 0.0 | -3.39 | 0.46 | 0.53 | — | 4.1 | 0.003 | 0.83 | 0.0 | 0.05 | 13.69 | 0.01 | 2.116 | 23.12 | 0.00 | 9.9 | 90.1 | 0.0 | -2.68 | 2.67 | 0.46 | 0.53 | — | 6642 | 814 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NSU | 12577 | 2023-07-16 | 2021-03-08 | 4.7 | 3.48 | 4.74 | 4.1 | 0.003 | 0.70 | 0.0 | 0.05 | 14.51 | 0.00 | 1.833 | 11.03 | 3.66 | 4.9 | 95.0 | 0.1 | -1.84 | 0.58 | 0.49 | — | 2.4 | 0.003 | 0.65 | 0.0 | 0.04 | 12.78 | 0.00 | 1.845 | 15.02 | 0.10 | 4.3 | 95.7 | 0.0 | -0.92 | 2.33 | 0.60 | 0.53 | — | 36070 | 2410 | 6 | 0 | 0 | 0 | 17527 | logfile |
✔ | 6XAS | 22114 | 2023-07-19 | 2020-06-04 | 3.8 | 3.01 | 3.14 | 2.9 | 0.002 | 0.49 | 0.0 | 0.04 | 10.96 | 0.00 | 1.961 | 4.92 | 1.49 | 2.2 | 97.8 | 0.0 | -2.00 | 0.62 | 0.55 | 1.72 | 3.0 | 0.004 | 0.64 | 0.0 | 0.04 | 14.52 | 0.00 | 1.788 | 8.34 | 0.31 | 4.2 | 95.8 | 0.0 | 0.03 | 0.74 | 0.61 | 0.53 | 1.54 | 46887 | 5804 | 16 | 73 | 3 | 0 | 0 | logfile |
✔ | 3JC2 | 3245 | 2023-07-03 | 2015-11-15 | 3.6 | 3.58 | 3.97 | 3.7 | 0.012 | 1.63 | 2.0 | 0.08 | 14.90 | 0.01 | 1.175 | 18.51 | 7.32 | 11.5 | 84.5 | 4.0 | -4.52 | 0.22 | 0.59 | 1.48 | 3.6 | 0.004 | 0.86 | 0.0 | 0.04 | 17.18 | 0.00 | 2.128 | 14.33 | 0.49 | 7.4 | 91.9 | 0.6 | -1.41 | 3.32 | 0.24 | 0.53 | 1.66 | 3911 | 482 | 4 | 0 | 32 | 0 | 0 | logfile |
✔ | 6HDD | 0204 | 2023-07-13 | 2018-08-17 | 4.5 | 5.28 | — | 4.4 | 0.009 | 1.36 | 3.0 | 0.08 | 12.60 | 0.01 | 2.220 | 12.08 | 1.07 | 18.3 | 81.6 | 0.1 | -6.11 | 0.74 | 0.42 | — | 8.5 | 0.005 | 1.07 | 0.0 | 0.05 | 13.67 | 0.01 | 1.438 | 29.15 | 0.00 | 16.5 | 83.1 | 0.4 | -3.27 | 5.54 | 0.87 | 0.54 | — | 28154 | 3605 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oFJ | 20047 | 2023-07-05 | 2019-03-30 | 4.5 | 5.60 | 3.27 | 7.8 | 0.007 | 0.96 | 0.0 | 0.05 | 15.74 | 0.01 | 2.135 | 3.69 | 0.00 | 7.1 | 92.9 | 0.0 | -4.36 | 0.48 | 0.33 | — | 7.8 | 0.002 | 0.58 | 0.0 | 0.04 | 14.03 | 0.00 | 2.002 | 10.00 | 0.00 | 8.7 | 91.3 | 0.0 | -1.93 | 1.22 | 0.56 | 0.54 | — | 10310 | 650 | 2 | 0 | 0 | 0 | 5142 | logfile |
✔ | 7URM | 26714 | 2023-07-03 | 2022-04-22 | 3.0 | 3.11 | 3.56 | 2.9 | 0.009 | 1.41 | 0.0 | 0.11 | 23.67 | 0.01 | 2.440 | 0.70 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.14 | 0.53 | — | 3.0 | 0.007 | 1.16 | 0.0 | 0.05 | 22.87 | 0.01 | 1.983 | 29.94 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.70 | 0.15 | 0.54 | — | 1905 | 0 | 1 | 90 | 0 | 0 | 0 | logfile |
✔ | 7UBB | 26437 | 2023-07-04 | 2022-03-14 | 4.5 | 5.42 | 4.95 | 5.3 | 0.002 | 0.68 | 0.0 | 0.04 | 14.32 | 0.00 | 2.231 | 14.38 | 0.00 | 0.9 | 99.1 | 0.0 | -1.04 | 0.40 | 0.59 | — | 5.3 | 0.002 | 0.60 | 0.0 | 0.04 | 14.50 | 0.00 | 2.283 | 8.83 | 0.00 | 1.8 | 98.2 | 0.0 | -1.07 | 0.80 | 0.37 | 0.54 | — | 7448 | 896 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7FiJ | 31599 | 2023-07-03 | 2021-07-31 | 3.8 | 2.32 | — | 1.8 | 0.001 | 0.41 | 0.0 | 0.04 | 8.02 | 0.00 | 2.344 | 3.95 | 0.00 | 4.1 | 95.9 | 0.0 | 1.10 | 0.58 | 0.50 | 3.05 | 1.6 | 0.003 | 0.71 | 0.0 | 0.04 | 10.87 | 0.00 | 2.234 | 8.95 | 1.25 | 10.6 | 89.4 | 0.0 | -0.78 | 0.63 | 0.60 | 0.54 | 2.95 | 3061 | 561 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8BC1 | 15959 | 2023-07-04 | 2022-10-14 | 2.93 | 3.48 | 2.73 | 3.5 | 0.002 | 0.46 | 0.0 | 0.04 | 10.38 | 0.00 | 2.265 | 7.96 | 3.43 | 2.9 | 97.1 | 0.0 | 1.53 | 0.38 | 0.52 | 1.52 | 3.5 | 0.004 | 0.81 | 0.0 | 0.04 | 15.72 | 0.01 | 2.131 | 15.98 | 2.25 | 4.8 | 95.2 | 0.0 | 0.67 | 1.04 | 0.40 | 0.54 | 1.03 | 8684 | 1054 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 8D6X | 27225 | 2023-07-09 | 2022-06-06 | 3.2 | 10.22 | — | — | 0.003 | 0.62 | 0.0 | 0.04 | 12.14 | 0.00 | 2.195 | 17.76 | 0.06 | 2.6 | 97.4 | 0.0 | 1.17 | 0.70 | 0.42 | 0.14 | — | 0.003 | 0.68 | 0.0 | 0.04 | 14.52 | 0.00 | 2.006 | 31.08 | 0.17 | 4.9 | 95.1 | 0.0 | 0.20 | 4.65 | 0.78 | 0.54 | 0.09 | 68362 | 8957 | 41 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Z0L | 14427 | 2023-07-07 | 2022-02-23 | 4.0 | 4.43 | 4.11 | 4.3 | 0.005 | 0.95 | 0.0 | 0.06 | 13.41 | 0.01 | 2.223 | 7.63 | 0.65 | 5.5 | 94.5 | 0.0 | -0.67 | 0.58 | 0.49 | — | 4.4 | 0.006 | 0.83 | 0.0 | 0.05 | 15.22 | 0.01 | 1.889 | 23.60 | 0.78 | 6.2 | 93.7 | 0.1 | -0.30 | 0.98 | 0.60 | 0.54 | — | 13752 | 856 | 9 | 0 | 12 | 0 | 6713 | logfile |
✔ | 8GHU | 40051 | 2023-07-19 | 2023-03-12 | 3.0 | 3.91 | 2.97 | 3.6 | 0.006 | 0.74 | 4.0 | 0.06 | 13.30 | 0.00 | 2.190 | 7.98 | 3.01 | 11.1 | 88.9 | 0.1 | -4.69 | 0.72 | 0.52 | 0.96 | 3.6 | 0.004 | 0.64 | 0.0 | 0.03 | 16.76 | 0.00 | 1.316 | 14.70 | 2.95 | 7.0 | 93.0 | 0.0 | -2.99 | 1.64 | 0.75 | 0.54 | 1.55 | 47408 | 1828 | 20 | 1531 | 84 | 0 | 0 | logfile |
✔ | 3LoS | 5137 | 2023-07-06 | 2010-02-04 | 4.3 | 2.98 | — | 3.0 | 0.008 | 2.44 | 224.0 | 0.19 | 19.87 | 0.01 | 2.259 | 87.93 | 23.89 | 17.4 | 68.9 | 13.8 | -6.57 | 0.57 | 0.49 | — | 3.2 | 0.004 | 1.16 | 0.0 | 0.05 | 15.91 | 0.01 | 2.171 | 27.07 | 0.03 | 20.2 | 75.7 | 4.1 | -4.25 | 1.37 | 0.62 | 0.54 | — | 63712 | 8512 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WGC | 32483 | 2023-07-04 | 2021-12-28 | 3.6 | 3.85 | — | 3.8 | 0.003 | 0.63 | 0.0 | 0.04 | 14.80 | 0.00 | 2.191 | 10.26 | 0.00 | 3.8 | 96.2 | 0.0 | -0.11 | 0.56 | 0.55 | 1.21 | 3.8 | 0.002 | 0.61 | 0.0 | 0.04 | 16.25 | 0.00 | 2.170 | 10.73 | 0.43 | 4.2 | 95.8 | 0.0 | 0.33 | 0.37 | 0.56 | 0.54 | 0.98 | 6527 | 795 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 7WoG | 32651 | 2023-07-03 | 2022-01-21 | 4.06 | 2.95 | — | 2.0 | 0.001 | 0.41 | 0.0 | 0.04 | 8.09 | 0.00 | 2.293 | 10.22 | 3.78 | 8.0 | 92.0 | 0.0 | -3.98 | 0.51 | 0.51 | — | 2.2 | 0.003 | 0.71 | 0.0 | 0.04 | 10.94 | 0.00 | 2.020 | 21.35 | 0.00 | 13.1 | 86.9 | 0.0 | -2.59 | 1.02 | 0.54 | 0.55 | — | 3362 | 433 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 3iZK | 5247 | 2023-07-05 | 2010-10-29 | 4.9 | 4.48 | — | 7.1 | 0.014 | 1.48 | 16.0 | 0.08 | 12.45 | 0.02 | 2.461 | 2.38 | 0.77 | 2.0 | 97.5 | 0.4 | -1.62 | 0.65 | 0.48 | — | 6.9 | 0.003 | 0.75 | 0.0 | 0.04 | 13.81 | 0.00 | 2.233 | 21.48 | 0.00 | 2.7 | 97.3 | 0.0 | -0.42 | 1.96 | 0.75 | 0.55 | — | 58448 | 7856 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LKH | 4068 | 2023-07-17 | 2016-07-22 | 3.46 | 5.27 | — | 11.0 | 0.018 | 2.37 | 65.0 | 0.12 | 12.66 | 0.02 | 2.255 | 87.12 | 1.96 | 3.4 | 95.2 | 1.4 | -0.27 | 0.38 | 0.17 | -0.03 | 8.8 | 0.003 | 0.79 | 0.0 | 0.04 | 15.60 | 0.00 | 2.128 | 23.73 | 0.29 | 6.5 | 93.5 | 0.0 | -0.63 | 2.08 | 0.50 | 0.55 | 0.41 | 37345 | 4740 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NVR | 12610 | 2023-07-17 | 2021-03-15 | 4.5 | 4.38 | 4.40 | 3.5 | 0.003 | 0.55 | 0.0 | 0.04 | 15.01 | 0.00 | 1.807 | 8.62 | 0.01 | 3.9 | 96.0 | 0.0 | 0.72 | 0.75 | 0.57 | — | 3.5 | 0.004 | 0.65 | 0.0 | 0.04 | 15.28 | 0.00 | 1.966 | 14.80 | 0.01 | 4.5 | 95.5 | 0.0 | 0.50 | 1.67 | 0.74 | 0.55 | — | 96126 | 11548 | 71 | 128 | 157 | 0 | 0 | logfile |
✔ | 6R91 | 4765 | 2023-07-18 | 2019-04-02 | 4.1 | 5.15 | — | 5.0 | 0.006 | 1.01 | 0.0 | 0.05 | 23.74 | 0.01 | 2.021 | 3.55 | 0.65 | 4.6 | 95.0 | 0.5 | -0.83 | 0.64 | 0.52 | — | 5.0 | 0.003 | 0.67 | 0.0 | 0.04 | 23.98 | 0.00 | 1.835 | 13.74 | 0.00 | 5.5 | 94.4 | 0.1 | -1.38 | 1.01 | 0.66 | 0.55 | — | 40540 | 1969 | 12 | 290 | 0 | 0 | 19063 | logfile |