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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7N3P | 24143 | 2023-02-18 | 2021-06-01 | 3.65 | 3.97 | — | 3.9 | 0.003 | 0.58 | 0.0 | 0.04 | 18.98 | 0.00 | 2.224 | 8.05 | 0.00 | 2.2 | 97.8 | 0.0 | 1.68 | 0.77 | 0.79 | 2.64 | 3.9 | 0.003 | 0.57 | 0.0 | 0.03 | 19.82 | 0.00 | 2.146 | 13.25 | 0.54 | 2.5 | 97.5 | 0.0 | 1.57 | 1.14 | 0.78 | 0.82 | 2.32 | 9055 | 454 | 4 | 259 | 0 | 0 | 0 | logfile |
✔ | 6DWB | 8924 | 2023-02-22 | 2018-06-26 | 3.3 | 3.43 | — | 3.4 | 0.007 | 0.66 | 0.0 | 0.04 | 7.21 | 0.01 | 2.161 | 2.34 | 0.00 | 5.1 | 94.9 | 0.0 | -6.22 | 0.61 | 0.75 | 2.51 | 3.4 | 0.003 | 0.49 | 0.0 | 0.03 | 13.59 | 0.00 | 2.142 | 4.35 | 0.10 | 3.6 | 96.4 | 0.0 | 4.58 | 1.15 | 0.75 | 0.90 | 2.83 | 18360 | 2340 | 30 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q65 | 13852 | 2023-02-17 | 2021-11-05 | 3.32 | 2.96 | 3.26 | 3.3 | 0.016 | 1.56 | 0.0 | 0.10 | 10.10 | 0.01 | 2.159 | 3.45 | 8.33 | 10.5 | 89.5 | 0.0 | -5.74 | 0.64 | 0.85 | 4.16 | 3.3 | 0.003 | 0.65 | 0.0 | 0.03 | 13.00 | 0.00 | 2.080 | 12.96 | 1.06 | 7.7 | 92.3 | 0.0 | -5.20 | 0.70 | 0.57 | 0.83 | 4.09 | 6204 | 880 | 22 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WAY | 32389 | 2023-02-20 | 2021-12-15 | 2.9 | 3.11 | — | 2.9 | 0.004 | 0.54 | 0.0 | 0.04 | 16.63 | 0.00 | 2.172 | 5.59 | 0.00 | 2.8 | 97.2 | 0.0 | 1.31 | 0.87 | 0.85 | 2.73 | 2.9 | 0.003 | 0.55 | 0.0 | 0.03 | 17.63 | 0.00 | 2.212 | 5.59 | 1.31 | 2.1 | 97.9 | 0.0 | 1.76 | 0.33 | 0.89 | 0.88 | 2.37 | 11453 | 960 | 4 | 175 | 0 | 0 | 0 | logfile |
✔ | 8CZi | 27098 | 2023-02-16 | 2022-05-24 | 2.22 | 2.26 | 2.61 | 2.0 | 0.004 | 0.33 | 0.0 | 0.03 | 14.48 | 0.00 | 2.382 | 6.62 | 0.00 | 0.0 | 100.0 | 0.0 | 2.90 | 0.78 | 0.80 | 1.97 | 2.0 | 0.004 | 0.39 | 0.0 | 0.03 | 15.18 | 0.00 | 2.140 | 5.65 | 0.34 | 0.0 | 100.0 | 0.0 | 5.55 | 0.85 | 0.83 | 0.84 | 1.84 | 2550 | 339 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NoG | 0468 | 2023-02-23 | 2019-01-16 | 3.9 | 4.05 | 4.50 | 3.9 | 0.009 | 1.12 | 1.0 | 0.06 | 26.55 | 0.01 | 2.239 | 6.27 | 0.84 | 4.1 | 95.9 | 0.0 | -1.83 | 0.84 | 0.81 | 0.53 | 3.9 | 0.004 | 0.63 | 0.0 | 0.03 | 26.62 | 0.00 | 2.153 | 11.24 | 0.32 | 2.2 | 97.8 | 0.0 | 1.84 | 1.76 | 0.86 | 0.85 | 0.51 | 14929 | 1124 | 12 | 292 | 0 | 0 | 0 | logfile |
✔ | 5G2X | 3331 | 2023-02-22 | 2016-04-16 | 3.8 | 3.49 | — | 3.4 | 0.001 | 0.31 | 0.0 | 0.02 | 11.56 | 0.00 | 2.219 | 4.36 | 0.45 | 19.7 | 74.4 | 5.9 | -5.72 | 0.51 | 0.30 | -0.09 | 3.3 | 0.004 | 0.76 | 0.0 | 0.03 | 18.97 | 0.00 | 2.000 | 29.45 | 0.91 | 18.5 | 80.5 | 1.1 | -5.04 | 2.32 | 0.80 | 0.65 | 0.86 | 19072 | 487 | 3 | 704 | 0 | 0 | 0 | logfile |
✔ | 7ZF1 | 14694 | 2023-02-22 | 2022-03-31 | 4.14 | 4.39 | 4.33 | 4.3 | 0.005 | 0.81 | 0.0 | 0.04 | 16.56 | 0.01 | 1.299 | 3.24 | 0.00 | 2.7 | 97.3 | 0.0 | 0.76 | 0.78 | 0.73 | — | 4.2 | 0.003 | 0.55 | 0.0 | 0.03 | 16.86 | 0.00 | 1.988 | 10.78 | 0.00 | 3.2 | 96.8 | 0.0 | 1.54 | 1.60 | 0.80 | 0.76 | — | 38889 | 2297 | 5 | 54 | 0 | 0 | 19431 | logfile |
✔ | 7RZV | 24779 | 2023-02-16 | 2021-08-27 | 2.11 | 2.24 | — | 2.0 | 0.005 | 0.35 | 0.0 | 0.03 | 14.68 | 0.00 | 2.348 | 5.44 | 0.00 | 0.0 | 100.0 | 0.0 | 3.06 | 0.79 | 0.80 | 2.21 | 2.0 | 0.004 | 0.37 | 0.0 | 0.03 | 15.99 | 0.00 | 2.228 | 4.86 | 0.67 | 0.0 | 100.0 | 0.0 | 5.66 | 0.87 | 0.83 | 0.83 | 1.88 | 2562 | 339 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RZU | 24778 | 2023-02-16 | 2021-08-27 | 2.3 | 2.32 | — | 2.0 | 0.006 | 0.50 | 0.0 | 0.04 | 13.61 | 0.01 | 2.212 | 7.50 | 0.00 | 2.9 | 97.1 | 0.0 | 1.69 | 0.77 | 0.78 | 1.84 | 2.0 | 0.002 | 0.48 | 0.0 | 0.03 | 15.88 | 0.00 | 2.308 | 6.69 | 1.40 | 0.0 | 100.0 | 0.0 | 5.49 | 0.47 | 0.80 | 0.81 | 1.54 | 2439 | 324 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7S38 | 24819 | 2023-02-21 | 2021-09-04 | 3.3 | 3.17 | 3.25 | 3.1 | 0.008 | 0.99 | 0.0 | 0.05 | 15.52 | 0.01 | 2.233 | 2.62 | 0.08 | 4.2 | 95.8 | 0.0 | -1.38 | 0.86 | 0.83 | 3.03 | 3.1 | 0.002 | 0.52 | 0.0 | 0.03 | 17.38 | 0.00 | 2.095 | 8.30 | 0.00 | 2.5 | 97.5 | 0.0 | 0.46 | 1.31 | 0.88 | 0.87 | 2.70 | 13987 | 1353 | 4 | 138 | 1 | 0 | 0 | logfile |
✔ | 7VVU | 32148 | 2023-02-28 | 2021-11-09 | 3.4 | 4.41 | — | 3.4 | 0.006 | 0.75 | 0.0 | 0.05 | 24.83 | 0.00 | 2.216 | 8.78 | 0.31 | 1.5 | 98.5 | 0.0 | 1.82 | 0.88 | 0.80 | 1.79 | 3.4 | 0.004 | 0.61 | 0.0 | 0.03 | 25.68 | 0.00 | 2.152 | 11.55 | 0.08 | 2.4 | 97.6 | 0.0 | 2.33 | 1.29 | 0.90 | 0.84 | 1.55 | 19374 | 1466 | 16 | 359 | 1 | 0 | 0 | logfile |
✔ | 7XZY | 33534 | 2023-02-20 | 2022-06-03 | 3.97 | 4.47 | 3.88 | 3.9 | 0.004 | 0.69 | 0.0 | 0.04 | 28.02 | 0.00 | 2.062 | 14.33 | 0.16 | 1.9 | 98.1 | 0.0 | 1.04 | 0.83 | 0.69 | 0.95 | 4.0 | 0.004 | 0.70 | 0.0 | 0.03 | 28.73 | 0.00 | 2.040 | 9.85 | 0.63 | 3.6 | 96.4 | 0.0 | 1.77 | 2.26 | 0.92 | 0.88 | 0.97 | 12821 | 762 | 10 | 330 | 0 | 0 | 0 | logfile |
✔ | 7W9V | 32373 | 2023-02-22 | 2021-12-10 | 3.95 | 4.17 | — | 4.0 | 0.006 | 0.86 | 0.0 | 0.05 | 25.08 | 0.01 | 2.021 | 8.63 | 0.44 | 2.0 | 98.0 | 0.0 | -0.79 | 0.79 | 0.65 | 0.99 | 4.0 | 0.003 | 0.52 | 0.0 | 0.03 | 25.97 | 0.00 | 1.961 | 39.59 | 0.09 | 3.1 | 96.9 | 0.0 | 2.06 | 1.37 | 0.88 | 0.84 | 1.07 | 18546 | 1302 | 11 | 290 | 0 | 0 | 2136 | logfile |
✔ | 7RZR | 24775 | 2023-02-16 | 2021-08-27 | 2.27 | 2.24 | — | 2.0 | 0.007 | 0.40 | 0.0 | 0.04 | 14.34 | 0.00 | 2.436 | 3.23 | 0.00 | 1.9 | 98.1 | 0.0 | 2.50 | 0.79 | 0.80 | 3.37 | 2.0 | 0.002 | 0.36 | 0.0 | 0.03 | 15.29 | 0.00 | 2.294 | 4.44 | 0.71 | 0.0 | 100.0 | 0.0 | 6.53 | 0.31 | 0.81 | 0.83 | 3.42 | 2448 | 324 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oFF | 20044 | 2023-02-19 | 2019-03-29 | 3.2 | 3.32 | — | 3.3 | 0.009 | 0.83 | 0.0 | 0.04 | 10.88 | 0.01 | 2.147 | 4.73 | 0.00 | 3.9 | 96.1 | 0.0 | -5.21 | 0.59 | 0.85 | 4.52 | 3.3 | 0.002 | 0.53 | 0.0 | 0.03 | 15.58 | 0.00 | 2.230 | 6.89 | 0.25 | 3.8 | 96.2 | 0.0 | 4.04 | 1.22 | 0.62 | 0.88 | 3.84 | 11016 | 1404 | 18 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RZQ | 24774 | 2023-02-16 | 2021-08-27 | 2.09 | 2.26 | — | 2.7 | 0.006 | 0.40 | 0.0 | 0.03 | 14.23 | 0.00 | 2.339 | 4.69 | 0.00 | 1.9 | 98.1 | 0.0 | 2.15 | 0.78 | 0.79 | 1.56 | 2.0 | 0.003 | 0.31 | 0.0 | 0.03 | 15.07 | 0.00 | 2.343 | 5.71 | 0.00 | 0.0 | 100.0 | 0.0 | 5.84 | 0.30 | 0.82 | 0.82 | 2.01 | 2421 | 322 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oFE | 20043 | 2023-02-20 | 2019-03-29 | 3.61 | 3.70 | — | 3.6 | 0.006 | 0.63 | 0.0 | 0.04 | 10.07 | 0.01 | 2.325 | 1.57 | 0.00 | 5.3 | 94.7 | 0.0 | -6.24 | 0.64 | 0.85 | 2.72 | 3.6 | 0.003 | 0.56 | 0.0 | 0.03 | 16.25 | 0.00 | 2.166 | 6.08 | 0.46 | 3.9 | 96.1 | 0.0 | 3.89 | 0.61 | 0.65 | 0.86 | 1.19 | 12220 | 1560 | 20 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TYi | 20583 | 2023-02-19 | 2019-08-09 | 3.3 | 3.55 | — | 3.5 | 0.012 | 1.03 | 0.0 | 0.05 | 15.89 | 0.00 | 1.796 | 11.31 | 0.43 | 4.8 | 95.1 | 0.1 | -0.84 | 0.70 | 0.81 | 1.90 | 3.5 | 0.003 | 0.54 | 0.0 | 0.03 | 17.18 | 0.00 | 2.214 | 6.38 | 0.32 | 2.6 | 97.4 | 0.0 | 3.07 | 1.18 | 0.61 | 0.77 | 1.34 | 9184 | 1186 | 11 | 0 | 4 | 0 | 0 | logfile |
✔ | 6WKT | 21708 | 2023-02-17 | 2020-04-16 | 3.4 | 3.21 | 3.09 | 3.3 | 0.004 | 0.81 | 0.0 | 0.05 | 13.97 | 0.01 | 2.329 | 0.00 | 0.00 | 1.9 | 98.1 | 0.0 | -3.42 | 0.65 | 0.75 | 3.69 | 3.3 | 0.003 | 0.57 | 0.0 | 0.03 | 16.11 | 0.00 | 2.212 | 10.95 | 0.00 | 4.8 | 95.2 | 0.0 | 3.85 | 1.35 | 0.64 | 0.76 | 3.76 | 3152 | 424 | 4 | 0 | 0 | 0 | 0 | logfile |