Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6ZLG	11265	2022-04-08	2020-06-30	3.0	3.18	—	3.1	0.003	0.44	0.0	0.03	16.50	0.00	2.180	7.60	4.15	0.1	99.9	0.0	1.26	0.80	0.87	2.98	3.1	0.003	0.39	0.0	0.03	17.79	0.00	2.131	6.39	3.02	1.5	98.5	0.0	5.23	1.17	0.81	0.89	2.69	33008	4072	24	0	0	0	0	logfile
✔	7NG9	12310	2022-04-06	2021-02-08	3.3	3.48	3.33	3.5	0.007	0.48	0.0	0.04	14.72	0.00	2.250	4.23	0.85	3.6	96.4	0.0	-0.87	0.62	0.80	4.09	3.5	0.003	0.49	0.0	0.03	15.82	0.00	2.122	6.92	0.09	2.5	97.5	0.0	2.16	2.59	0.70	0.86	3.35	19368	1263	3	0	0	0	9615	logfile
✔	6WU3	21904	2022-04-05	2020-05-04	3.16	3.62	3.40	3.5	0.008	0.60	0.0	0.04	15.89	0.00	2.057	9.10	6.27	8.4	91.6	0.0	-3.62	0.61	0.85	2.96	3.6	0.004	0.58	0.0	0.03	15.93	0.00	2.035	8.73	0.57	6.0	94.0	0.0	1.00	1.85	0.60	0.87	2.53	13610	890	2	0	0	0	6936	logfile
✔	6WDG	21635	2022-04-12	2020-03-31	3.3	3.73	3.80	3.6	0.006	0.96	0.0	0.08	13.53	0.01	1.303	12.76	1.02	12.2	85.8	2.0	-4.96	0.81	0.83	1.41	3.6	0.003	0.66	0.0	0.03	15.82	0.01	2.078	18.54	0.92	9.8	90.1	0.2	-2.56	0.74	0.82	0.84	1.17	148582	6025	57	4733	0	0	0	logfile
✔	6T90	10406	2022-04-05	2019-10-25	3.05	3.74	—	3.3	0.022	1.52	0.0	0.09	24.61	0.01	2.459	0.50	0.00	0.3	99.7	0.0	1.02	0.84	0.81	4.34	3.3	0.004	0.61	0.0	0.03	26.52	0.00	2.069	8.32	0.26	1.8	98.2	0.0	2.78	2.93	0.86	0.87	2.61	13031	903	19	282	9	0	0	logfile
✔	6T93	10408	2022-04-05	2019-10-25	3.49	4.10	—	3.7	0.014	1.15	0.0	0.06	27.23	0.01	2.435	0.78	0.00	0.3	99.7	0.0	0.78	0.87	0.85	2.94	3.7	0.004	0.67	0.0	0.03	28.09	0.00	2.207	12.22	0.48	2.4	97.6	0.0	2.49	1.86	0.87	0.87	2.02	12199	758	10	302	0	0	0	logfile
✔	6YBW	10775	2022-04-10	2020-03-18	3.1	3.30	2.98	3.2	0.008	1.03	0.0	0.05	16.82	0.02	2.097	4.21	3.04	3.7	96.3	0.0	-2.06	0.74	0.87	3.02	3.2	0.003	0.65	0.0	0.03	16.77	0.01	1.950	8.43	0.26	2.9	97.1	0.0	-0.05	1.13	0.75	0.88	2.94	52840	3374	30	1248	61	0	0	logfile
✔	6L3U	0826	2022-04-06	2019-10-15	2.53	2.59	2.48	2.6	0.012	0.93	0.0	0.05	17.70	0.01	2.206	0.45	3.01	1.9	98.1	0.0	-2.86	0.64	0.84	4.02	2.6	0.002	0.52	0.0	0.03	16.91	0.00	1.987	2.29	1.51	0.4	99.6	0.0	2.74	2.33	0.65	0.86	2.83	19698	1206	18	0	12	174	9588	logfile
✔	6RJU	4906	2022-04-04	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	10.0	0.003	0.66	0.0	0.03	16.23	0.00	2.422	6.03	0.00	3.9	96.1	0.0	-0.32	1.40	0.27	0.03	-0.67	1992	131	1	0	0	0	997	logfile
✔	6L3V	0827	2022-04-06	2019-10-15	2.63	2.90	2.72	2.9	0.011	0.89	0.0	0.04	17.00	0.01	2.218	1.00	5.45	0.5	99.5	0.0	-5.00	0.57	0.85	3.54	2.9	0.002	0.58	0.0	0.03	16.57	0.00	2.198	2.61	1.21	0.5	99.5	0.0	2.37	3.59	0.59	0.87	2.85	19416	1206	12	0	6	0	9528	logfile
✔	6XZC	10658	2022-04-05	2020-02-03	3.37	3.56	3.37	3.6	0.004	0.63	0.0	0.04	12.50	0.01	2.323	2.10	3.06	1.7	98.3	0.0	-1.92	0.66	0.74	0.86	3.6	0.004	0.63	0.0	0.03	15.35	0.01	2.178	5.65	0.29	0.4	99.6	0.0	5.09	1.10	0.74	0.86	0.86	13279	1694	7	0	0	0	0	logfile
✔	6ZTP	11423	2022-04-12	2020-07-20	3.0	2.63	3.07	2.9	0.013	1.11	0.0	0.06	16.31	0.02	0.284	6.58	5.10	5.8	93.5	0.7	-2.13	0.81	0.86	2.80	3.0	0.004	0.71	1.0	0.03	15.81	0.01	1.050	10.86	2.46	3.9	96.0	0.0	-0.05	2.16	0.82	0.88	2.33	172846	8886	79	4793	491	0	0	logfile
✔	6PC8	20299	2022-04-06	2019-06-16	2.9	3.26	—	3.1	0.006	0.48	0.0	0.03	12.75	0.02	1.931	3.25	2.62	7.2	92.7	0.1	-4.11	0.71	0.86	3.45	3.1	0.005	0.62	0.0	0.03	14.57	0.01	2.126	8.75	4.58	7.9	92.0	0.1	-1.64	0.45	0.72	0.88	3.21	72169	967	8	3015	1	0	0	logfile
✔	6PC5	20296	2022-04-07	2019-06-16	2.7	3.05	—	2.9	0.006	0.49	2.0	0.02	12.54	0.02	1.965	2.72	1.57	6.1	93.8	0.1	-3.49	0.73	0.88	5.14	2.9	0.005	0.63	2.0	0.03	14.51	0.01	1.988	7.40	4.19	6.3	93.5	0.2	-1.07	1.24	0.73	0.91	4.17	72206	971	9	3015	1	0	0	logfile
✔	6PC6	20297	2022-04-06	2019-06-16	2.5	3.08	—	2.9	0.008	0.50	0.0	0.03	12.75	0.02	1.930	2.91	2.11	6.3	93.7	0.0	-3.58	0.73	0.88	4.50	2.9	0.004	0.63	0.0	0.03	14.58	0.01	1.976	7.93	3.42	6.7	93.1	0.2	-0.78	0.91	0.74	0.90	4.21	72127	963	8	3015	1	0	0	logfile
✔	6VWN	21422	2022-04-09	2020-02-20	3.4	3.71	—	3.2	0.002	0.58	0.0	0.03	14.91	0.00	1.951	7.11	3.85	4.3	95.7	0.0	-3.14	0.83	0.82	1.13	3.2	0.003	0.60	0.0	0.03	16.17	0.00	1.889	15.62	0.51	6.1	93.9	0.0	-1.23	1.21	0.84	0.86	1.05	140036	5341	57	4580	55	0	0	logfile
✔	6XMF	22257	2022-04-04	2020-06-30	3.1	3.28	—	3.3	0.002	0.56	0.0	0.03	16.46	0.00	2.246	8.52	0.00	6.8	93.2	0.0	-1.78	0.68	0.71	2.25	3.2	0.003	0.61	0.0	0.03	17.72	0.00	2.149	15.63	0.20	9.8	90.2	0.0	-0.48	0.47	0.71	0.76	2.71	7382	627	3	109	1	0	0	logfile
✔	7B0S	11970	2022-04-06	2020-11-21	3.6	3.73	—	3.6	0.008	0.75	0.0	0.04	15.91	0.00	2.214	7.36	0.35	6.2	93.8	0.0	-0.53	0.83	0.86	2.66	3.6	0.003	0.55	0.0	0.03	16.99	0.01	2.292	4.30	0.35	2.1	97.9	0.0	1.35	0.36	0.82	0.85	1.81	21076	2572	8	0	12	0	0	logfile
✔	6L3T	0825	2022-04-06	2019-10-15	2.34	2.41	2.27	2.4	0.012	1.03	0.0	0.05	16.76	0.01	2.306	1.05	3.61	1.0	99.0	0.0	-3.24	0.68	0.86	4.85	2.4	0.003	0.60	0.0	0.03	16.29	0.00	1.929	2.44	1.41	1.1	98.9	0.0	2.69	1.60	0.69	0.87	4.48	19722	1206	18	0	6	204	9588	logfile
✔	6X0U	21984	2022-04-04	2020-05-17	3.6	3.62	—	3.6	0.004	0.62	0.0	0.04	14.50	0.00	2.277	5.74	0.00	3.7	96.1	0.3	-5.79	0.26	0.78	1.89	3.6	0.003	0.71	0.0	0.03	17.78	0.01	2.197	6.38	0.58	3.7	96.3	0.0	1.26	0.82	0.27	0.78	2.36	3091	398	4	0	0	0	0	logfile

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