Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Q4E	13804	2023-08-11	2021-10-30	3.63	3.95	3.60	3.8	0.008	0.99	0.0	0.06	13.94	0.01	1.857	5.12	0.00	2.5	97.5	0.0	-1.91	0.70	0.77	3.06	3.8	0.004	0.61	0.0	0.03	16.07	0.00	1.922	9.65	0.00	4.0	96.0	0.0	1.17	1.50	0.69	0.78	2.09	10049	608	9	0	29	0	4731	logfile
✔	8F6K	28886	2023-08-14	2022-11-16	3.46	3.70	3.47	3.7	0.002	0.50	0.0	0.03	14.25	0.00	1.909	10.84	0.00	6.0	93.5	0.5	-0.45	0.53	0.73	2.16	3.7	0.003	0.57	0.0	0.03	15.85	0.00	1.845	12.09	0.44	6.9	92.7	0.4	1.05	0.51	0.50	0.74	2.25	17298	1132	8	0	4	0	8586	logfile
✔	7JGG	22326	2023-08-09	2020-07-19	4.88	8.00	—	7.7	0.002	0.46	0.0	0.03	13.22	0.00	1.988	54.49	0.00	3.3	96.5	0.2	1.67	0.66	0.64	—	7.5	0.002	0.47	0.0	0.03	12.80	0.00	1.958	77.81	0.00	4.3	95.7	0.0	1.53	1.24	0.66	0.69	—	4210	506	1	0	0	0	28	logfile
✔	7Z4J	14499	2023-08-13	2022-03-03	2.99	3.74	3.13	3.4	0.005	0.48	0.0	0.04	13.43	0.00	1.860	7.21	2.15	2.2	97.8	0.0	0.96	0.85	0.87	2.76	3.4	0.003	0.46	0.0	0.03	14.74	0.00	1.890	7.32	1.32	2.6	97.4	0.0	1.42	0.49	0.85	0.86	2.67	13948	1345	10	142	4	8	0	logfile
✔	7K6Q	22692	2023-08-14	2020-09-21	3.1	3.63	3.21	3.5	0.006	0.78	0.0	0.04	24.92	0.01	2.108	3.36	0.00	2.3	97.7	0.0	1.37	0.81	0.80	3.65	3.5	0.003	0.54	0.0	0.03	26.21	0.00	2.166	9.77	0.00	3.3	96.7	0.0	1.28	0.36	0.81	0.82	2.91	15578	1229	13	292	1	0	0	logfile
✔	7LCJ	23275	2023-08-09	2021-01-11	2.82	3.02	2.78	3.1	0.011	1.19	3.0	0.08	13.36	0.01	2.216	8.89	1.16	3.9	96.1	0.0	0.54	0.46	0.80	2.75	3.1	0.002	0.50	0.0	0.03	15.46	0.00	2.255	4.21	1.45	2.1	97.9	0.0	1.41	1.70	0.48	0.82	2.84	3264	390	1	0	1	17	0	logfile
✔	8oTS	17183	2023-08-13	2023-04-21	3.3	4.05	3.44	3.6	0.009	1.03	0.0	0.06	25.68	0.01	2.508	0.66	0.63	0.3	99.7	0.0	1.70	0.89	0.85	2.32	3.7	0.005	0.56	0.0	0.03	25.90	0.00	2.174	7.52	0.00	1.2	98.8	0.0	4.62	1.37	0.89	0.88	1.45	13160	985	18	254	8	0	0	logfile
✔	7UTH	26770	2023-08-23	2022-04-26	3.9	4.02	—	4.0	0.006	0.98	1.0	0.05	18.37	0.01	2.095	4.45	0.72	5.3	94.5	0.2	-0.70	0.46	0.67	0.95	4.0	0.003	0.57	1.0	0.03	18.50	0.00	2.002	11.40	0.53	4.7	95.1	0.1	0.87	1.74	0.51	0.71	0.79	36590	2242	2	0	0	0	18572	logfile
✔	6MRT	9212	2023-08-09	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.49	0.0	0.03	15.38	0.00	2.211	3.09	1.33	0.6	99.4	0.0	5.41	3.08	0.73	0.87	2.47	26868	3420	12	0	0	0	0	logfile
✔	8A2Q	15101	2023-08-19	2022-06-06	3.53	4.25	3.41	3.5	0.005	0.79	0.0	0.04	16.54	0.00	2.201	1.75	0.17	3.2	96.7	0.0	1.92	0.79	0.70	1.19	3.5	0.004	0.55	0.0	0.03	16.24	0.00	1.991	4.51	0.25	4.1	95.8	0.0	3.16	0.97	0.84	0.82	1.33	27812	2203	4	58	0	0	12784	logfile
✔	6GBZ	4378	2023-08-21	2018-04-16	3.8	4.02	—	3.9	0.002	0.61	0.0	0.03	13.32	0.00	2.235	2.82	0.08	6.2	93.4	0.3	-4.24	0.72	0.67	1.01	3.9	0.003	0.63	0.0	0.03	15.52	0.00	1.993	15.28	0.96	9.4	90.5	0.1	-1.76	0.84	0.78	0.76	0.97	86401	3074	29	2908	0	0	0	logfile
✔	8CZE	27096	2023-08-12	2022-05-24	2.58	3.35	2.72	3.2	0.004	0.55	0.0	0.03	25.95	0.00	2.285	3.74	0.32	1.9	98.1	0.0	2.43	0.86	0.86	3.06	3.2	0.003	0.57	0.0	0.03	26.92	0.00	2.147	4.01	1.58	3.1	96.9	0.0	2.44	0.26	0.85	0.86	2.93	12029	763	10	292	0	0	0	logfile
✔	6MRU	9213	2023-08-10	2018-10-15	3.2	3.31	—	3.3	0.005	0.73	0.0	0.04	10.16	0.01	2.297	2.27	0.82	1.4	98.6	0.0	-1.59	0.72	0.83	3.34	3.3	0.002	0.46	0.0	0.03	13.25	0.00	2.193	3.51	0.00	0.6	99.4	0.0	5.67	3.08	0.76	0.87	1.78	29107	3705	13	0	0	0	0	logfile
✔	8E4N	27893	2023-08-09	2022-08-18	3.07	3.58	3.04	3.3	0.003	0.47	0.0	0.04	11.07	0.01	2.123	8.01	0.00	1.8	98.2	0.0	3.01	0.70	0.79	2.72	3.3	0.003	0.68	0.0	0.03	13.61	0.00	2.129	8.20	0.46	3.0	97.0	0.1	2.62	0.69	0.70	0.79	2.64	52736	3604	8	0	4	0	25460	logfile
✔	7YG4	33807	2023-08-10	2022-07-11	3.1	3.38	3.15	3.3	0.003	0.58	0.0	0.04	15.98	0.00	2.147	7.09	0.00	3.3	96.7	0.0	0.41	0.75	0.81	1.84	3.3	0.002	0.57	0.0	0.03	17.05	0.00	2.235	6.89	0.00	3.3	96.7	0.0	2.29	0.36	0.75	0.81	0.84	7510	953	3	0	0	0	0	logfile
✔	7V9U	31827	2023-08-11	2021-08-26	3.12	3.31	—	3.2	0.004	0.63	0.0	0.04	22.35	0.01	2.180	10.84	0.00	6.2	93.8	0.0	-1.53	0.75	0.78	3.58	3.2	0.003	0.58	0.0	0.03	22.69	0.00	2.169	9.65	0.18	5.5	94.5	0.0	-0.74	1.23	0.76	0.80	3.38	9354	618	8	209	0	0	0	logfile
✔	7PEo	13355	2023-08-19	2021-08-11	4.37	6.48	—	4.4	0.009	1.63	0.0	0.13	14.80	0.02	2.206	4.00	0.60	2.5	97.5	0.0	-2.52	0.90	0.86	—	4.3	0.002	0.58	0.0	0.03	12.57	0.00	2.099	6.50	0.00	1.9	98.1	0.0	1.94	1.33	0.91	0.88	—	26278	3388	42	0	210	0	0	logfile
✔	7QXA	14196	2023-08-14	2022-01-26	3.2	3.14	3.21	3.2	0.010	1.18	0.0	0.09	17.53	0.01	2.254	0.91	0.28	6.0	93.6	0.4	-3.16	0.69	0.71	3.06	3.2	0.002	0.58	0.0	0.03	17.06	0.00	2.130	7.49	0.00	4.2	95.7	0.1	0.66	0.74	0.74	0.79	1.98	15576	1247	6	265	0	0	0	logfile
✔	6ZHY	11221	2023-08-11	2020-06-24	3.0	3.57	2.97	3.1	0.005	0.91	0.0	0.06	27.29	0.01	2.316	3.82	0.21	1.5	98.5	0.0	0.65	0.90	0.87	4.24	3.1	0.005	0.62	0.0	0.03	28.96	0.00	2.141	8.33	2.56	1.5	98.5	0.0	3.34	0.59	0.91	0.90	3.14	8999	562	9	220	0	0	0	logfile
✔	6GC7	4382	2023-08-09	2018-04-17	4.3	4.85	—	4.4	0.003	0.67	0.0	0.03	13.13	0.00	2.251	5.08	0.28	5.9	93.9	0.1	-4.27	0.76	0.61	—	4.4	0.007	0.65	0.0	0.03	15.19	0.00	1.974	24.68	0.00	9.8	90.1	0.1	-2.10	1.65	0.91	0.86	—	54410	1738	17	1901	0	0	0	logfile

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