Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7N3P	24143	2023-02-18	2021-06-01	3.65	3.97	—	3.9	0.003	0.58	0.0	0.04	18.98	0.00	2.224	8.05	0.00	2.2	97.8	0.0	1.68	0.77	0.79	2.64	3.9	0.003	0.57	0.0	0.03	19.82	0.00	2.146	13.25	0.54	2.5	97.5	0.0	1.57	1.14	0.78	0.82	2.32	9055	454	4	259	0	0	0	logfile
✔	6DWB	8924	2023-02-22	2018-06-26	3.3	3.43	—	3.4	0.007	0.66	0.0	0.04	7.21	0.01	2.161	2.34	0.00	5.1	94.9	0.0	-6.22	0.61	0.75	2.51	3.4	0.003	0.49	0.0	0.03	13.59	0.00	2.142	4.35	0.10	3.6	96.4	0.0	4.58	1.15	0.75	0.90	2.83	18360	2340	30	0	0	0	0	logfile
✔	7Q65	13852	2023-02-17	2021-11-05	3.32	2.96	3.26	3.3	0.016	1.56	0.0	0.10	10.10	0.01	2.159	3.45	8.33	10.5	89.5	0.0	-5.74	0.64	0.85	4.16	3.3	0.003	0.65	0.0	0.03	13.00	0.00	2.080	12.96	1.06	7.7	92.3	0.0	-5.20	0.70	0.57	0.83	4.09	6204	880	22	0	0	0	0	logfile
✔	7WAY	32389	2023-02-20	2021-12-15	2.9	3.11	—	2.9	0.004	0.54	0.0	0.04	16.63	0.00	2.172	5.59	0.00	2.8	97.2	0.0	1.31	0.87	0.85	2.73	2.9	0.003	0.55	0.0	0.03	17.63	0.00	2.212	5.59	1.31	2.1	97.9	0.0	1.76	0.33	0.89	0.88	2.37	11453	960	4	175	0	0	0	logfile
✔	8CZi	27098	2023-02-16	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.004	0.39	0.0	0.03	15.18	0.00	2.140	5.65	0.34	0.0	100.0	0.0	5.55	0.85	0.83	0.84	1.84	2550	339	6	0	0	0	0	logfile
✔	6NoG	0468	2023-02-23	2019-01-16	3.9	4.05	4.50	3.9	0.009	1.12	1.0	0.06	26.55	0.01	2.239	6.27	0.84	4.1	95.9	0.0	-1.83	0.84	0.81	0.53	3.9	0.004	0.63	0.0	0.03	26.62	0.00	2.153	11.24	0.32	2.2	97.8	0.0	1.84	1.76	0.86	0.85	0.51	14929	1124	12	292	0	0	0	logfile
✔	5G2X	3331	2023-02-22	2016-04-16	3.8	3.49	—	3.4	0.001	0.31	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.004	0.76	0.0	0.03	18.97	0.00	2.000	29.45	0.91	18.5	80.5	1.1	-5.04	2.32	0.80	0.65	0.86	19072	487	3	704	0	0	0	logfile
✔	7ZF1	14694	2023-02-22	2022-03-31	4.14	4.39	4.33	4.3	0.005	0.81	0.0	0.04	16.56	0.01	1.299	3.24	0.00	2.7	97.3	0.0	0.76	0.78	0.73	—	4.2	0.003	0.55	0.0	0.03	16.86	0.00	1.988	10.78	0.00	3.2	96.8	0.0	1.54	1.60	0.80	0.76	—	38889	2297	5	54	0	0	19431	logfile
✔	7RZV	24779	2023-02-16	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.37	0.0	0.03	15.99	0.00	2.228	4.86	0.67	0.0	100.0	0.0	5.66	0.87	0.83	0.83	1.88	2562	339	6	0	0	0	0	logfile
✔	7RZU	24778	2023-02-16	2021-08-27	2.3	2.32	—	2.0	0.006	0.50	0.0	0.04	13.61	0.01	2.212	7.50	0.00	2.9	97.1	0.0	1.69	0.77	0.78	1.84	2.0	0.002	0.48	0.0	0.03	15.88	0.00	2.308	6.69	1.40	0.0	100.0	0.0	5.49	0.47	0.80	0.81	1.54	2439	324	6	0	0	0	0	logfile
✔	7S38	24819	2023-02-21	2021-09-04	3.3	3.17	3.25	3.1	0.008	0.99	0.0	0.05	15.52	0.01	2.233	2.62	0.08	4.2	95.8	0.0	-1.38	0.86	0.83	3.03	3.1	0.002	0.52	0.0	0.03	17.38	0.00	2.095	8.30	0.00	2.5	97.5	0.0	0.46	1.31	0.88	0.87	2.70	13987	1353	4	138	1	0	0	logfile
✔	7VVU	32148	2023-02-28	2021-11-09	3.4	4.41	—	3.4	0.006	0.75	0.0	0.05	24.83	0.00	2.216	8.78	0.31	1.5	98.5	0.0	1.82	0.88	0.80	1.79	3.4	0.004	0.61	0.0	0.03	25.68	0.00	2.152	11.55	0.08	2.4	97.6	0.0	2.33	1.29	0.90	0.84	1.55	19374	1466	16	359	1	0	0	logfile
✔	7XZY	33534	2023-02-20	2022-06-03	3.97	4.47	3.88	3.9	0.004	0.69	0.0	0.04	28.02	0.00	2.062	14.33	0.16	1.9	98.1	0.0	1.04	0.83	0.69	0.95	4.0	0.004	0.70	0.0	0.03	28.73	0.00	2.040	9.85	0.63	3.6	96.4	0.0	1.77	2.26	0.92	0.88	0.97	12821	762	10	330	0	0	0	logfile
✔	7W9V	32373	2023-02-22	2021-12-10	3.95	4.17	—	4.0	0.006	0.86	0.0	0.05	25.08	0.01	2.021	8.63	0.44	2.0	98.0	0.0	-0.79	0.79	0.65	0.99	4.0	0.003	0.52	0.0	0.03	25.97	0.00	1.961	39.59	0.09	3.1	96.9	0.0	2.06	1.37	0.88	0.84	1.07	18546	1302	11	290	0	0	2136	logfile
✔	7RZR	24775	2023-02-16	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.002	0.36	0.0	0.03	15.29	0.00	2.294	4.44	0.71	0.0	100.0	0.0	6.53	0.31	0.81	0.83	3.42	2448	324	6	0	0	0	0	logfile
✔	6oFF	20044	2023-02-19	2019-03-29	3.2	3.32	—	3.3	0.009	0.83	0.0	0.04	10.88	0.01	2.147	4.73	0.00	3.9	96.1	0.0	-5.21	0.59	0.85	4.52	3.3	0.002	0.53	0.0	0.03	15.58	0.00	2.230	6.89	0.25	3.8	96.2	0.0	4.04	1.22	0.62	0.88	3.84	11016	1404	18	0	0	0	0	logfile
✔	7RZQ	24774	2023-02-16	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.003	0.31	0.0	0.03	15.07	0.00	2.343	5.71	0.00	0.0	100.0	0.0	5.84	0.30	0.82	0.82	2.01	2421	322	6	0	0	0	0	logfile
✔	6oFE	20043	2023-02-20	2019-03-29	3.61	3.70	—	3.6	0.006	0.63	0.0	0.04	10.07	0.01	2.325	1.57	0.00	5.3	94.7	0.0	-6.24	0.64	0.85	2.72	3.6	0.003	0.56	0.0	0.03	16.25	0.00	2.166	6.08	0.46	3.9	96.1	0.0	3.89	0.61	0.65	0.86	1.19	12220	1560	20	0	0	0	0	logfile
✔	6TYi	20583	2023-02-19	2019-08-09	3.3	3.55	—	3.5	0.012	1.03	0.0	0.05	15.89	0.00	1.796	11.31	0.43	4.8	95.1	0.1	-0.84	0.70	0.81	1.90	3.5	0.003	0.54	0.0	0.03	17.18	0.00	2.214	6.38	0.32	2.6	97.4	0.0	3.07	1.18	0.61	0.77	1.34	9184	1186	11	0	4	0	0	logfile
✔	6WKT	21708	2023-02-17	2020-04-16	3.4	3.21	3.09	3.3	0.004	0.81	0.0	0.05	13.97	0.01	2.329	0.00	0.00	1.9	98.1	0.0	-3.42	0.65	0.75	3.69	3.3	0.003	0.57	0.0	0.03	16.11	0.00	2.212	10.95	0.00	4.8	95.2	0.0	3.85	1.35	0.64	0.76	3.76	3152	424	4	0	0	0	0	logfile

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