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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6ZLG | 11265 | 2022-04-08 | 2020-06-30 | 3.0 | 3.18 | — | 3.1 | 0.003 | 0.44 | 0.0 | 0.03 | 16.50 | 0.00 | 2.180 | 7.60 | 4.15 | 0.1 | 99.9 | 0.0 | 1.26 | 0.80 | 0.87 | 2.98 | 3.1 | 0.003 | 0.39 | 0.0 | 0.03 | 17.79 | 0.00 | 2.131 | 6.39 | 3.02 | 1.5 | 98.5 | 0.0 | 5.23 | 1.17 | 0.81 | 0.89 | 2.69 | 33008 | 4072 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NG9 | 12310 | 2022-04-06 | 2021-02-08 | 3.3 | 3.48 | 3.33 | 3.5 | 0.007 | 0.48 | 0.0 | 0.04 | 14.72 | 0.00 | 2.250 | 4.23 | 0.85 | 3.6 | 96.4 | 0.0 | -0.87 | 0.62 | 0.80 | 4.09 | 3.5 | 0.003 | 0.49 | 0.0 | 0.03 | 15.82 | 0.00 | 2.122 | 6.92 | 0.09 | 2.5 | 97.5 | 0.0 | 2.16 | 2.59 | 0.70 | 0.86 | 3.35 | 19368 | 1263 | 3 | 0 | 0 | 0 | 9615 | logfile |
✔ | 6WU3 | 21904 | 2022-04-05 | 2020-05-04 | 3.16 | 3.62 | 3.40 | 3.5 | 0.008 | 0.60 | 0.0 | 0.04 | 15.89 | 0.00 | 2.057 | 9.10 | 6.27 | 8.4 | 91.6 | 0.0 | -3.62 | 0.61 | 0.85 | 2.96 | 3.6 | 0.004 | 0.58 | 0.0 | 0.03 | 15.93 | 0.00 | 2.035 | 8.73 | 0.57 | 6.0 | 94.0 | 0.0 | 1.00 | 1.85 | 0.60 | 0.87 | 2.53 | 13610 | 890 | 2 | 0 | 0 | 0 | 6936 | logfile |
✔ | 6WDG | 21635 | 2022-04-12 | 2020-03-31 | 3.3 | 3.73 | 3.80 | 3.6 | 0.006 | 0.96 | 0.0 | 0.08 | 13.53 | 0.01 | 1.303 | 12.76 | 1.02 | 12.2 | 85.8 | 2.0 | -4.96 | 0.81 | 0.83 | 1.41 | 3.6 | 0.003 | 0.66 | 0.0 | 0.03 | 15.82 | 0.01 | 2.078 | 18.54 | 0.92 | 9.8 | 90.1 | 0.2 | -2.56 | 0.74 | 0.82 | 0.84 | 1.17 | 148582 | 6025 | 57 | 4733 | 0 | 0 | 0 | logfile |
✔ | 6T90 | 10406 | 2022-04-05 | 2019-10-25 | 3.05 | 3.74 | — | 3.3 | 0.022 | 1.52 | 0.0 | 0.09 | 24.61 | 0.01 | 2.459 | 0.50 | 0.00 | 0.3 | 99.7 | 0.0 | 1.02 | 0.84 | 0.81 | 4.34 | 3.3 | 0.004 | 0.61 | 0.0 | 0.03 | 26.52 | 0.00 | 2.069 | 8.32 | 0.26 | 1.8 | 98.2 | 0.0 | 2.78 | 2.93 | 0.86 | 0.87 | 2.61 | 13031 | 903 | 19 | 282 | 9 | 0 | 0 | logfile |
✔ | 6T93 | 10408 | 2022-04-05 | 2019-10-25 | 3.49 | 4.10 | — | 3.7 | 0.014 | 1.15 | 0.0 | 0.06 | 27.23 | 0.01 | 2.435 | 0.78 | 0.00 | 0.3 | 99.7 | 0.0 | 0.78 | 0.87 | 0.85 | 2.94 | 3.7 | 0.004 | 0.67 | 0.0 | 0.03 | 28.09 | 0.00 | 2.207 | 12.22 | 0.48 | 2.4 | 97.6 | 0.0 | 2.49 | 1.86 | 0.87 | 0.87 | 2.02 | 12199 | 758 | 10 | 302 | 0 | 0 | 0 | logfile |
✔ | 6YBW | 10775 | 2022-04-10 | 2020-03-18 | 3.1 | 3.30 | 2.98 | 3.2 | 0.008 | 1.03 | 0.0 | 0.05 | 16.82 | 0.02 | 2.097 | 4.21 | 3.04 | 3.7 | 96.3 | 0.0 | -2.06 | 0.74 | 0.87 | 3.02 | 3.2 | 0.003 | 0.65 | 0.0 | 0.03 | 16.77 | 0.01 | 1.950 | 8.43 | 0.26 | 2.9 | 97.1 | 0.0 | -0.05 | 1.13 | 0.75 | 0.88 | 2.94 | 52840 | 3374 | 30 | 1248 | 61 | 0 | 0 | logfile |
✔ | 6L3U | 0826 | 2022-04-06 | 2019-10-15 | 2.53 | 2.59 | 2.48 | 2.6 | 0.012 | 0.93 | 0.0 | 0.05 | 17.70 | 0.01 | 2.206 | 0.45 | 3.01 | 1.9 | 98.1 | 0.0 | -2.86 | 0.64 | 0.84 | 4.02 | 2.6 | 0.002 | 0.52 | 0.0 | 0.03 | 16.91 | 0.00 | 1.987 | 2.29 | 1.51 | 0.4 | 99.6 | 0.0 | 2.74 | 2.33 | 0.65 | 0.86 | 2.83 | 19698 | 1206 | 18 | 0 | 12 | 174 | 9588 | logfile |
✔ | 6RJU | 4906 | 2022-04-04 | 2019-04-29 | 3.2 | 4.49 | 2.14 | 10.0 | 0.007 | 0.93 | 0.0 | 0.05 | 15.36 | 0.00 | 2.423 | 4.52 | 0.00 | 11.6 | 88.4 | 0.0 | -7.10 | 0.22 | -0.01 | -0.80 | 10.0 | 0.003 | 0.66 | 0.0 | 0.03 | 16.23 | 0.00 | 2.422 | 6.03 | 0.00 | 3.9 | 96.1 | 0.0 | -0.32 | 1.40 | 0.27 | 0.03 | -0.67 | 1992 | 131 | 1 | 0 | 0 | 0 | 997 | logfile |
✔ | 6L3V | 0827 | 2022-04-06 | 2019-10-15 | 2.63 | 2.90 | 2.72 | 2.9 | 0.011 | 0.89 | 0.0 | 0.04 | 17.00 | 0.01 | 2.218 | 1.00 | 5.45 | 0.5 | 99.5 | 0.0 | -5.00 | 0.57 | 0.85 | 3.54 | 2.9 | 0.002 | 0.58 | 0.0 | 0.03 | 16.57 | 0.00 | 2.198 | 2.61 | 1.21 | 0.5 | 99.5 | 0.0 | 2.37 | 3.59 | 0.59 | 0.87 | 2.85 | 19416 | 1206 | 12 | 0 | 6 | 0 | 9528 | logfile |
✔ | 6XZC | 10658 | 2022-04-05 | 2020-02-03 | 3.37 | 3.56 | 3.37 | 3.6 | 0.004 | 0.63 | 0.0 | 0.04 | 12.50 | 0.01 | 2.323 | 2.10 | 3.06 | 1.7 | 98.3 | 0.0 | -1.92 | 0.66 | 0.74 | 0.86 | 3.6 | 0.004 | 0.63 | 0.0 | 0.03 | 15.35 | 0.01 | 2.178 | 5.65 | 0.29 | 0.4 | 99.6 | 0.0 | 5.09 | 1.10 | 0.74 | 0.86 | 0.86 | 13279 | 1694 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZTP | 11423 | 2022-04-12 | 2020-07-20 | 3.0 | 2.63 | 3.07 | 2.9 | 0.013 | 1.11 | 0.0 | 0.06 | 16.31 | 0.02 | 0.284 | 6.58 | 5.10 | 5.8 | 93.5 | 0.7 | -2.13 | 0.81 | 0.86 | 2.80 | 3.0 | 0.004 | 0.71 | 1.0 | 0.03 | 15.81 | 0.01 | 1.050 | 10.86 | 2.46 | 3.9 | 96.0 | 0.0 | -0.05 | 2.16 | 0.82 | 0.88 | 2.33 | 172846 | 8886 | 79 | 4793 | 491 | 0 | 0 | logfile |
✔ | 6PC8 | 20299 | 2022-04-06 | 2019-06-16 | 2.9 | 3.26 | — | 3.1 | 0.006 | 0.48 | 0.0 | 0.03 | 12.75 | 0.02 | 1.931 | 3.25 | 2.62 | 7.2 | 92.7 | 0.1 | -4.11 | 0.71 | 0.86 | 3.45 | 3.1 | 0.005 | 0.62 | 0.0 | 0.03 | 14.57 | 0.01 | 2.126 | 8.75 | 4.58 | 7.9 | 92.0 | 0.1 | -1.64 | 0.45 | 0.72 | 0.88 | 3.21 | 72169 | 967 | 8 | 3015 | 1 | 0 | 0 | logfile |
✔ | 6PC5 | 20296 | 2022-04-07 | 2019-06-16 | 2.7 | 3.05 | — | 2.9 | 0.006 | 0.49 | 2.0 | 0.02 | 12.54 | 0.02 | 1.965 | 2.72 | 1.57 | 6.1 | 93.8 | 0.1 | -3.49 | 0.73 | 0.88 | 5.14 | 2.9 | 0.005 | 0.63 | 2.0 | 0.03 | 14.51 | 0.01 | 1.988 | 7.40 | 4.19 | 6.3 | 93.5 | 0.2 | -1.07 | 1.24 | 0.73 | 0.91 | 4.17 | 72206 | 971 | 9 | 3015 | 1 | 0 | 0 | logfile |
✔ | 6PC6 | 20297 | 2022-04-06 | 2019-06-16 | 2.5 | 3.08 | — | 2.9 | 0.008 | 0.50 | 0.0 | 0.03 | 12.75 | 0.02 | 1.930 | 2.91 | 2.11 | 6.3 | 93.7 | 0.0 | -3.58 | 0.73 | 0.88 | 4.50 | 2.9 | 0.004 | 0.63 | 0.0 | 0.03 | 14.58 | 0.01 | 1.976 | 7.93 | 3.42 | 6.7 | 93.1 | 0.2 | -0.78 | 0.91 | 0.74 | 0.90 | 4.21 | 72127 | 963 | 8 | 3015 | 1 | 0 | 0 | logfile |
✔ | 6VWN | 21422 | 2022-04-09 | 2020-02-20 | 3.4 | 3.71 | — | 3.2 | 0.002 | 0.58 | 0.0 | 0.03 | 14.91 | 0.00 | 1.951 | 7.11 | 3.85 | 4.3 | 95.7 | 0.0 | -3.14 | 0.83 | 0.82 | 1.13 | 3.2 | 0.003 | 0.60 | 0.0 | 0.03 | 16.17 | 0.00 | 1.889 | 15.62 | 0.51 | 6.1 | 93.9 | 0.0 | -1.23 | 1.21 | 0.84 | 0.86 | 1.05 | 140036 | 5341 | 57 | 4580 | 55 | 0 | 0 | logfile |
✔ | 6XMF | 22257 | 2022-04-04 | 2020-06-30 | 3.1 | 3.28 | — | 3.3 | 0.002 | 0.56 | 0.0 | 0.03 | 16.46 | 0.00 | 2.246 | 8.52 | 0.00 | 6.8 | 93.2 | 0.0 | -1.78 | 0.68 | 0.71 | 2.25 | 3.2 | 0.003 | 0.61 | 0.0 | 0.03 | 17.72 | 0.00 | 2.149 | 15.63 | 0.20 | 9.8 | 90.2 | 0.0 | -0.48 | 0.47 | 0.71 | 0.76 | 2.71 | 7382 | 627 | 3 | 109 | 1 | 0 | 0 | logfile |
✔ | 7B0S | 11970 | 2022-04-06 | 2020-11-21 | 3.6 | 3.73 | — | 3.6 | 0.008 | 0.75 | 0.0 | 0.04 | 15.91 | 0.00 | 2.214 | 7.36 | 0.35 | 6.2 | 93.8 | 0.0 | -0.53 | 0.83 | 0.86 | 2.66 | 3.6 | 0.003 | 0.55 | 0.0 | 0.03 | 16.99 | 0.01 | 2.292 | 4.30 | 0.35 | 2.1 | 97.9 | 0.0 | 1.35 | 0.36 | 0.82 | 0.85 | 1.81 | 21076 | 2572 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 6L3T | 0825 | 2022-04-06 | 2019-10-15 | 2.34 | 2.41 | 2.27 | 2.4 | 0.012 | 1.03 | 0.0 | 0.05 | 16.76 | 0.01 | 2.306 | 1.05 | 3.61 | 1.0 | 99.0 | 0.0 | -3.24 | 0.68 | 0.86 | 4.85 | 2.4 | 0.003 | 0.60 | 0.0 | 0.03 | 16.29 | 0.00 | 1.929 | 2.44 | 1.41 | 1.1 | 98.9 | 0.0 | 2.69 | 1.60 | 0.69 | 0.87 | 4.48 | 19722 | 1206 | 18 | 0 | 6 | 204 | 9588 | logfile |
✔ | 6X0U | 21984 | 2022-04-04 | 2020-05-17 | 3.6 | 3.62 | — | 3.6 | 0.004 | 0.62 | 0.0 | 0.04 | 14.50 | 0.00 | 2.277 | 5.74 | 0.00 | 3.7 | 96.1 | 0.3 | -5.79 | 0.26 | 0.78 | 1.89 | 3.6 | 0.003 | 0.71 | 0.0 | 0.03 | 17.78 | 0.01 | 2.197 | 6.38 | 0.58 | 3.7 | 96.3 | 0.0 | 1.26 | 0.82 | 0.27 | 0.78 | 2.36 | 3091 | 398 | 4 | 0 | 0 | 0 | 0 | logfile |