Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7T10	25586	2023-08-10	2021-11-30	2.5	2.70	—	2.8	0.005	1.00	0.0	0.06	12.36	0.01	2.235	3.61	0.73	3.0	97.0	0.0	0.62	0.64	0.83	4.77	2.8	0.002	0.57	0.0	0.04	13.76	0.00	2.268	2.39	0.73	2.3	97.7	0.0	1.52	0.91	0.64	0.83	3.88	8429	1146	9	0	0	5	0	logfile
✔	7MJQ	23882	2023-08-14	2021-04-20	4.2	4.29	—	4.2	0.009	1.55	0.0	0.15	6.42	0.01	1.552	6.01	0.00	9.4	90.6	0.0	-1.25	0.52	0.66	—	4.2	0.003	0.76	0.0	0.05	6.43	0.00	2.169	2.39	0.00	11.9	88.1	0.0	-2.25	1.83	0.59	0.75	—	14976	2982	13	0	10	0	0	logfile
✔	7LiL	23382	2023-08-18	2021-01-27	2.84	3.14	—	3.2	0.006	0.91	0.0	0.05	15.99	0.01	2.374	1.98	5.56	5.3	94.7	0.0	-1.45	0.78	0.86	4.00	3.1	0.005	0.75	0.0	0.05	18.54	0.01	2.195	2.42	2.17	5.4	94.6	0.0	-1.27	0.39	0.75	0.86	3.51	130140	15840	60	0	60	0	0	logfile
✔	7Xo3	33335	2023-08-09	2022-04-30	2.6	2.32	1.68	2.7	0.002	0.41	0.0	0.05	12.37	0.00	2.223	4.70	0.00	8.2	91.8	0.0	-3.31	0.45	0.81	5.78	2.7	0.003	0.56	0.0	0.05	16.32	0.00	2.293	2.44	3.03	9.8	90.2	0.0	-1.76	2.17	0.48	0.85	5.80	2598	378	6	0	0	0	0	logfile
✔	6iG9	9664	2023-08-14	2018-09-25	4.6	5.44	4.27	4.3	0.007	1.07	0.0	0.05	9.51	0.01	2.299	9.69	0.73	10.2	89.7	0.2	-3.99	0.69	0.65	—	4.2	0.003	0.66	0.0	0.04	5.17	0.00	2.218	2.46	0.00	9.7	90.3	0.0	0.91	1.56	0.87	0.72	—	17122	3386	1	0	0	0	0	logfile
✔	8G0D	29654	2023-08-16	2023-01-31	2.9	3.84	3.02	2.9	0.005	0.87	0.0	0.18	6.79	0.00	1.844	0.67	0.00	2.6	97.3	0.0	0.74	0.68	0.65	—	2.9	0.004	0.76	0.0	0.08	6.41	0.00	1.793	2.47	0.00	7.3	92.7	0.0	0.44	1.63	0.80	0.81	—	19874	4860	30	0	16	0	0	logfile
✔	7QER	13938	2023-08-15	2021-12-03	2.2	2.66	2.18	2.3	0.009	0.94	0.0	0.05	14.11	0.00	2.117	3.04	2.94	1.6	98.4	0.0	-0.05	0.84	0.88	3.46	2.3	0.002	0.55	0.0	0.04	14.91	0.00	2.235	2.48	2.20	1.3	98.7	0.0	3.46	1.24	0.84	0.89	3.42	19097	2244	36	0	60	305	0	logfile
✔	7LiT	23385	2023-08-17	2021-01-27	2.53	2.69	—	2.8	0.008	0.76	0.0	0.05	13.58	0.00	2.309	1.69	0.44	3.9	96.1	0.0	0.35	0.71	0.85	4.23	2.7	0.003	0.55	0.0	0.04	16.23	0.00	2.168	2.50	1.36	3.3	96.7	0.0	0.89	1.75	0.73	0.88	3.70	126840	15480	60	0	60	0	0	logfile
✔	7XS7	33423	2023-08-12	2022-05-13	3.2	3.43	3.32	3.4	0.004	0.71	0.0	0.04	14.66	0.00	1.946	3.69	0.16	4.2	95.6	0.3	-2.73	0.69	0.86	3.61	3.4	0.003	0.54	0.0	0.04	15.46	0.00	2.165	2.53	0.31	5.0	94.9	0.1	0.11	0.98	0.67	0.87	2.98	12270	1458	4	0	42	0	0	logfile
✔	7R5H	14320	2023-08-10	2022-02-10	2.59	2.63	2.45	2.7	0.011	1.85	4.0	0.11	11.92	0.01	2.519	0.67	0.00	3.2	96.8	0.0	-1.94	0.42	0.84	6.46	2.6	0.005	0.62	0.0	0.05	15.82	0.00	2.515	2.56	2.40	4.7	95.3	0.0	-2.23	1.15	0.42	0.89	5.42	7440	477	6	0	0	0	3786	logfile
✔	7XKH	33251	2023-08-18	2022-04-19	3.1	3.59	2.97	3.3	0.002	0.44	0.0	0.04	12.68	0.00	2.283	2.61	0.00	1.6	98.4	0.0	1.48	0.85	0.87	2.71	3.3	0.003	0.51	0.0	0.04	14.24	0.00	2.214	2.58	0.00	2.4	97.6	0.0	0.83	1.12	0.87	0.91	2.74	25068	3257	9	0	1	0	0	logfile
✔	7MQF	23945	2023-08-17	2021-05-05	2.88	2.74	2.86	2.8	0.006	0.72	0.0	0.06	11.73	0.00	2.175	1.01	0.00	0.5	99.5	0.0	1.24	0.72	0.87	6.16	2.7	0.003	0.48	0.0	0.04	13.43	0.00	2.255	2.60	0.00	1.0	99.0	0.0	1.00	0.44	0.78	0.91	5.71	12288	1608	16	16	0	0	0	logfile
✔	7YMJ	33930	2023-08-09	2022-07-28	3.35	3.65	3.24	3.6	0.005	0.95	0.0	0.05	14.81	0.01	2.349	1.30	0.00	3.6	96.4	0.0	-3.45	0.64	0.83	2.70	3.6	0.002	0.53	0.0	0.04	15.47	0.00	2.335	2.60	0.62	3.1	96.9	0.0	1.05	0.38	0.62	0.82	2.36	3085	396	3	0	1	0	0	logfile
✔	7TAN	25777	2023-08-12	2021-12-21	3.0	2.95	—	3.1	0.003	0.47	0.0	0.03	27.32	0.00	2.287	3.25	0.00	2.8	97.2	0.0	2.18	0.82	0.85	2.22	3.1	0.004	0.51	0.0	0.03	27.86	0.00	2.221	2.61	0.78	2.0	98.0	0.0	2.33	0.33	0.83	0.87	2.17	12119	768	12	294	0	0	0	logfile
✔	6TQF	10550	2023-08-11	2019-12-16	3.5	3.81	—	3.7	0.007	0.99	0.0	0.05	15.75	0.01	2.092	3.00	0.09	5.2	94.8	0.0	-6.53	0.74	0.90	2.73	3.7	0.003	0.59	0.0	0.04	15.83	0.00	1.970	2.62	0.00	3.6	96.4	0.0	-3.38	0.38	0.74	0.90	2.77	10426	1268	4	0	14	0	0	logfile
✔	8A8E	15230	2023-08-10	2022-06-22	2.9	2.76	2.92	2.7	0.005	0.79	0.0	0.05	15.95	0.01	2.353	4.32	2.81	7.0	93.0	0.0	-2.84	0.78	0.83	3.00	2.7	0.004	0.65	0.0	0.05	16.84	0.01	2.284	2.63	2.81	6.5	93.5	0.0	0.21	0.47	0.79	0.86	2.88	56568	7248	24	0	0	0	0	logfile
✔	7QL2	14061	2023-08-09	2021-12-19	2.95	2.96	2.65	3.1	0.010	2.11	2.0	0.11	10.98	0.01	2.674	0.00	0.00	7.6	92.4	0.0	-2.82	0.30	0.74	4.50	3.5	0.003	0.58	0.0	0.05	12.52	0.00	2.497	2.63	1.48	8.3	91.7	0.0	-3.27	1.13	0.22	0.72	4.36	2286	150	3	0	0	0	1179	logfile
✔	8G6K	29772	2023-08-11	2023-02-15	3.6	3.71	3.52	3.4	0.002	0.48	0.0	0.04	4.19	0.00	2.523	0.20	0.00	2.7	97.3	0.0	1.65	0.54	0.71	—	3.5	0.003	0.60	0.0	0.04	4.50	0.00	2.284	2.64	0.00	6.7	93.3	0.0	0.05	1.47	0.54	0.74	—	9388	1379	7	0	0	0	2576	logfile
✔	7ZJ8	14744	2023-08-12	2022-04-08	3.1	2.96	3.14	3.1	0.014	1.87	0.0	0.10	15.10	0.02	1.471	1.49	0.23	5.3	94.7	0.0	-2.59	0.80	0.87	3.61	3.1	0.002	0.57	0.0	0.04	15.89	0.00	2.223	2.64	0.00	1.8	98.2	0.0	0.55	1.21	0.80	0.86	3.27	12342	1482	18	0	51	0	0	logfile
✔	7A6A	11668	2023-08-20	2020-08-25	1.15	1.13	—	1.2	0.018	1.70	24.0	0.16	14.68	0.01	1.857	3.78	3.03	1.2	98.8	0.0	2.45	0.47	0.61	9.02	1.2	0.003	0.59	0.0	0.04	15.31	0.00	2.163	2.66	1.82	1.8	98.2	0.0	4.55	0.44	0.69	0.82	8.90	41613	4152	72	0	32	4621	0	logfile

• ← previous
• Page 4 of 542
• next →