Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QEQ	13937	2023-02-23	2021-12-03	1.9	2.38	1.89	2.1	0.009	0.61	0.0	0.04	12.54	0.00	2.181	2.19	1.18	1.1	98.9	0.0	1.60	0.82	0.90	4.56	2.1	0.003	0.59	0.0	0.04	14.16	0.00	2.210	2.94	1.18	1.8	98.2	0.0	3.97	0.99	0.82	0.92	4.15	19313	2268	36	0	60	305	0	logfile
✔	6ZGi	11207	2023-02-26	2020-06-18	2.9	3.12	3.02	3.1	0.006	0.76	0.0	0.05	12.43	0.00	2.317	1.64	0.73	4.2	95.7	0.1	-0.93	0.75	0.83	4.10	3.1	0.003	0.58	0.0	0.04	14.63	0.00	2.146	2.98	1.36	4.1	95.9	0.0	-0.46	1.19	0.74	0.84	3.89	26901	3294	33	0	78	0	0	logfile
✔	7BH9	12187	2023-02-17	2021-01-11	2.9	3.58	2.91	3.4	0.007	0.76	0.0	0.05	13.23	0.00	2.021	5.17	0.33	4.9	95.1	0.0	-3.10	0.85	0.88	3.70	3.4	0.003	0.56	0.0	0.04	15.05	0.00	2.176	2.98	1.16	2.2	97.8	0.0	0.52	0.38	0.80	0.84	2.52	5876	730	3	0	4	0	0	logfile
✔	7oDL	12842	2023-02-25	2021-04-29	3.03	2.61	2.99	2.9	0.003	0.58	0.0	0.05	14.46	0.00	2.028	2.79	0.64	5.8	94.1	0.1	-1.28	0.76	0.82	3.77	2.8	0.003	0.57	0.0	0.05	15.70	0.00	2.193	2.98	0.34	5.0	95.0	0.0	-0.91	1.09	0.75	0.84	3.62	24338	3066	6	0	33	0	0	logfile
✔	7ZJ8	14744	2023-02-20	2022-04-08	3.1	2.96	3.14	3.1	0.014	1.84	0.0	0.10	14.69	0.02	1.471	1.49	0.23	5.3	94.7	0.0	-2.59	0.80	0.87	3.61	3.1	0.003	0.56	0.0	0.04	15.22	0.00	2.177	3.01	0.00	1.9	98.1	0.0	0.40	0.53	0.81	0.86	3.15	12342	1482	18	0	51	0	0	logfile
✔	7PBM	13295	2023-02-28	2021-08-02	3.2	3.36	3.30	3.3	0.004	0.72	0.0	0.04	14.81	0.01	1.840	1.18	0.06	1.1	98.9	0.0	-1.25	0.76	0.83	3.08	3.3	0.003	0.57	0.0	0.04	16.58	0.00	1.824	3.02	0.12	1.8	98.2	0.0	0.97	0.76	0.78	0.85	2.40	32079	1968	16	30	9	0	15819	logfile
✔	7S8N	24898	2023-02-18	2021-09-18	2.9	2.20	2.92	2.1	0.012	0.90	0.0	0.06	13.04	0.01	2.202	4.10	0.00	5.1	94.9	0.0	-0.33	0.79	0.80	3.96	2.1	0.004	0.60	0.0	0.04	15.91	0.00	2.215	3.02	1.47	3.2	96.8	0.0	0.80	1.01	0.82	0.83	2.92	8154	1090	6	0	1	0	0	logfile
✔	7oD3	12818	2023-02-24	2021-04-28	2.8	2.59	3.00	2.7	0.004	0.58	0.0	0.05	13.89	0.00	1.953	2.55	0.23	4.8	95.2	0.0	-1.05	0.73	0.81	3.95	2.7	0.004	0.62	0.0	0.05	16.09	0.00	2.243	3.03	2.35	4.3	95.7	0.0	-0.66	0.31	0.75	0.85	3.81	24222	3036	6	0	36	0	0	logfile
✔	7R5M	14331	2023-02-20	2022-02-11	3.3	3.09	3.20	3.2	0.006	0.94	0.0	0.06	14.64	0.00	2.411	1.26	0.80	4.6	95.4	0.0	-0.79	0.70	0.80	2.46	3.1	0.003	0.56	0.0	0.04	16.00	0.00	2.111	3.04	0.08	1.6	98.4	0.0	1.73	1.36	0.70	0.86	2.07	11295	1491	9	0	0	0	0	logfile
✔	7M05	23609	2023-02-22	2021-03-10	2.39	2.66	2.49	2.6	0.013	0.89	0.0	0.06	14.64	0.01	2.064	3.66	0.50	6.9	92.3	0.8	-3.01	0.75	0.81	4.52	2.6	0.004	0.63	0.0	0.05	16.24	0.00	2.046	3.05	1.19	3.6	96.3	0.1	0.16	1.27	0.79	0.84	4.23	57152	3636	12	0	4	0	28188	logfile
✔	7MQE	23944	2023-02-24	2021-05-05	3.69	3.22	3.67	3.5	0.008	0.84	0.0	0.06	13.45	0.00	2.308	1.58	0.77	1.7	98.3	0.0	0.67	0.75	0.81	3.89	3.5	0.006	0.60	0.0	0.05	14.01	0.00	2.248	3.07	0.29	3.6	96.4	0.0	1.06	0.41	0.79	0.84	3.33	12163	1629	16	16	0	0	0	logfile
✔	8BYN	16329	2023-02-17	2022-12-13	2.6	2.60	2.45	2.5	0.010	1.13	0.0	0.05	14.76	0.00	2.417	6.44	0.00	1.4	98.6	0.0	-1.93	0.45	0.92	7.24	2.5	0.004	0.53	0.0	0.05	18.30	0.00	2.273	3.08	0.76	1.4	98.6	0.0	-1.53	0.46	0.43	0.93	6.44	3564	450	10	0	6	0	0	logfile
✔	7LZE	23605	2023-02-18	2021-03-09	3.23	3.26	3.28	3.6	0.002	0.42	0.0	0.04	13.80	0.00	2.222	3.40	0.11	8.4	91.6	0.0	-0.70	0.76	0.82	3.47	3.5	0.005	0.60	0.0	0.05	14.92	0.00	2.119	3.08	0.23	8.2	91.8	0.0	-0.94	1.12	0.77	0.85	2.71	7842	1011	9	0	9	0	0	logfile
✔	5XB1	6714	2023-02-27	2017-03-15	3.0	3.16	2.84	3.1	0.007	0.71	0.0	0.05	10.82	0.00	2.173	4.34	0.00	2.0	98.0	0.0	-6.31	0.80	0.88	4.19	3.1	0.003	0.56	0.0	0.04	17.97	0.00	2.170	3.09	3.33	2.9	97.1	0.0	3.51	0.68	0.79	0.86	2.76	30847	3720	48	0	0	55	0	logfile
✔	6MRT	9212	2023-02-21	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.49	0.0	0.03	15.38	0.00	2.211	3.09	1.33	0.6	99.4	0.0	5.41	3.08	0.73	0.87	2.47	26868	3420	12	0	0	0	0	logfile
✔	7PW8	13678	2023-02-22	2021-10-06	2.82	2.88	—	2.9	0.005	0.75	4.0	0.16	12.38	0.00	2.086	3.97	0.18	3.4	96.6	0.0	1.21	0.74	0.85	2.97	2.9	0.004	0.56	0.0	0.04	14.71	0.00	1.963	3.09	1.71	2.9	97.1	0.0	1.55	0.42	0.75	0.89	3.11	18960	2434	5	0	199	0	0	logfile
✔	7RHX	24470	2023-02-25	2021-07-19	3.23	3.49	3.31	3.4	0.004	0.79	0.0	0.05	20.49	0.01	2.289	1.05	0.00	2.0	98.0	0.0	-0.38	0.75	0.84	2.43	3.4	0.003	0.60	0.0	0.04	21.99	0.00	2.124	3.10	0.00	2.9	97.1	0.0	1.42	1.07	0.76	0.87	1.58	25787	1288	8	168	0	0	12159	logfile
✔	7P8W	13256	2023-02-22	2021-07-23	2.2	2.34	—	2.3	0.014	1.79	4.0	0.09	14.82	0.01	2.340	1.55	0.75	3.8	96.0	0.2	-1.36	0.85	0.92	6.91	2.3	0.003	0.64	0.0	0.04	15.80	0.00	2.207	3.10	0.52	3.0	97.0	0.0	0.52	1.15	0.85	0.91	6.20	17668	2008	12	0	8	1110	0	logfile
✔	8ADG	15362	2023-02-24	2022-07-08	3.0	3.31	3.06	3.3	0.006	0.62	0.0	0.04	14.03	0.00	1.941	3.67	0.00	4.0	96.0	0.0	0.24	0.64	0.82	3.73	3.3	0.003	0.51	0.0	0.04	15.23	0.00	1.375	3.11	1.11	4.0	96.0	0.0	0.35	0.90	0.60	0.83	3.53	23183	1506	6	0	0	0	11375	logfile
✔	7TAT	25784	2023-02-24	2021-12-21	3.2	3.44	3.17	3.4	0.009	1.32	1.0	0.07	9.52	0.01	2.376	0.60	0.18	2.8	96.8	0.4	0.25	0.74	0.78	4.94	3.5	0.003	0.56	0.0	0.04	11.83	0.00	2.229	3.11	0.29	1.5	98.3	0.1	0.94	0.50	0.73	0.80	4.18	23926	3564	20	0	53	0	0	logfile

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