Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VD9	31911	2023-07-08	2021-09-06	2.29	1.75	2.28	1.8	0.002	0.54	0.0	0.04	17.25	0.00	2.194	7.80	2.33	3.8	96.2	0.0	0.41	0.58	0.72	3.68	1.8	0.003	0.57	0.0	0.04	17.52	0.01	2.206	7.90	2.62	3.9	96.1	0.0	0.00	0.30	0.58	0.73	3.61	16426	1991	8	0	8	0	0	logfile
✔	7TBG	25798	2023-07-12	2021-12-22	2.5	2.10	2.44	1.8	0.006	0.76	0.0	0.05	13.03	0.01	2.268	1.89	0.57	3.2	96.8	0.0	0.60	0.75	0.79	4.65	1.8	0.005	0.59	0.0	0.04	16.05	0.00	2.102	5.00	1.23	2.0	98.0	0.0	2.29	1.13	0.77	0.82	3.61	19679	1190	6	0	5	20	9858	logfile
✔	7XW9	33494	2023-07-05	2022-05-26	2.7	2.10	2.82	1.8	0.005	0.69	0.0	0.05	12.26	0.01	2.167	6.26	0.00	3.5	96.5	0.0	0.37	0.78	0.77	3.77	1.8	0.003	0.58	0.0	0.04	15.18	0.00	2.179	7.09	2.45	3.9	96.1	0.0	1.10	0.36	0.79	0.80	3.50	8988	1143	6	0	1	0	0	logfile
✔	7M3G	23654	2023-07-06	2021-03-18	2.5	2.29	—	1.8	0.007	0.96	0.0	0.06	17.07	0.01	2.281	2.21	0.93	3.0	97.0	0.0	-2.02	0.84	0.85	3.70	1.8	0.004	0.61	0.0	0.04	17.55	0.00	2.167	4.31	2.22	3.7	96.3	0.0	-0.24	0.33	0.85	0.87	3.45	13298	1627	11	0	41	0	0	logfile
✔	7XA3	33086	2023-07-05	2022-03-17	2.9	2.18	—	2.1	0.005	0.85	0.0	0.05	7.87	0.01	2.250	4.13	0.00	2.5	97.5	0.0	0.60	0.75	0.74	3.21	1.8	0.003	0.62	0.0	0.04	14.17	0.00	2.192	9.41	2.38	3.4	96.6	0.0	1.61	1.17	0.78	0.78	2.75	9591	1220	6	0	0	0	0	logfile
✔	7WiG	32529	2023-07-05	2022-01-03	2.7	2.14	—	1.8	0.006	0.75	0.0	0.05	13.13	0.01	2.192	6.75	0.00	2.0	98.0	0.0	1.11	0.78	0.77	3.19	1.8	0.002	0.90	0.0	0.04	15.48	0.00	2.195	5.51	1.13	2.0	98.0	0.0	1.42	0.33	0.79	0.80	2.94	8931	1139	6	0	1	0	0	logfile
✔	8CPT	16785	2023-07-16	2023-03-03	1.79	1.72	1.81	1.8	0.004	0.72	0.0	0.05	15.65	0.01	2.157	1.26	0.49	1.0	99.0	0.0	2.30	0.80	0.85	8.36	1.8	0.003	0.58	0.0	0.04	16.07	0.00	2.206	1.20	0.65	1.8	98.2	0.0	4.32	0.33	0.81	0.87	8.14	36024	4152	72	0	38	1906	0	logfile
✔	8F86	28915	2023-07-07	2022-11-21	3.1	3.36	3.26	1.8	0.007	0.69	0.0	0.06	26.55	0.00	1.927	8.46	0.00	5.2	94.6	0.2	0.66	0.85	0.80	1.06	1.8	0.005	0.69	0.0	0.05	27.33	0.01	2.139	11.04	0.34	4.5	95.3	0.2	0.50	0.40	0.86	0.80	1.24	14400	1055	13	296	2	0	0	logfile
✔	7T9i	25758	2023-07-11	2021-12-19	2.9	2.43	—	1.9	0.005	0.91	1.0	0.05	12.76	0.01	2.016	3.30	0.62	3.6	96.4	0.0	-0.16	0.69	0.63	2.32	1.8	0.004	0.67	0.0	0.04	15.11	0.00	1.904	9.43	2.50	6.3	93.7	0.0	-0.52	1.14	0.74	0.72	2.51	23529	1532	11	0	8	0	11557	logfile
✔	7N1X	24126	2023-07-12	2021-05-28	4.0	2.34	—	1.8	0.014	1.89	13.0	0.14	14.58	0.01	1.484	9.90	1.97	8.1	91.3	0.6	-2.39	0.80	0.69	—	1.8	0.004	0.81	0.0	0.05	16.30	0.00	2.131	14.61	0.70	4.9	95.1	0.0	-1.19	1.10	0.80	0.69	—	26810	3257	35	0	95	0	0	logfile
✔	8G1i	29671	2023-07-07	2023-02-02	3.12	2.20	3.26	2.0	0.003	0.64	0.0	0.04	19.78	0.01	1.975	7.71	1.72	6.5	93.5	0.0	-1.85	0.75	0.77	2.21	1.8	0.002	0.54	0.0	0.04	19.62	0.00	2.216	5.86	0.60	4.5	95.5	0.0	-0.66	0.89	0.75	0.79	2.22	13613	1298	4	142	0	0	0	logfile
✔	7S8P	24900	2023-07-04	2021-09-18	2.6	2.11	2.62	1.8	0.005	0.75	0.0	0.05	12.81	0.00	2.183	3.18	0.00	5.8	94.2	0.0	-2.01	0.73	0.75	4.73	1.8	0.004	0.67	0.0	0.04	15.58	0.00	2.121	3.18	2.61	5.4	94.6	0.0	0.13	0.36	0.84	0.84	3.71	8093	1089	5	0	1	0	0	logfile
✔	7PQH	13594	2023-07-18	2021-09-17	3.87	2.74	3.96	1.8	0.004	0.88	0.0	0.05	14.43	0.01	2.083	8.81	0.12	6.2	93.8	0.0	-1.40	0.68	0.67	0.79	1.8	0.003	0.81	0.0	0.04	16.60	0.00	2.107	16.33	0.39	6.7	93.3	0.0	-0.70	0.49	0.68	0.68	0.60	102671	12832	12	0	0	0	0	logfile
✔	7PF1	13364	2023-07-18	2021-08-11	2.1	1.83	—	2.0	0.020	1.66	0.0	0.12	14.32	0.01	1.766	1.25	0.65	1.7	98.3	0.0	1.14	0.71	0.75	6.05	1.8	0.004	0.61	0.0	0.04	17.28	0.00	1.913	10.65	0.00	2.3	97.7	0.0	4.72	1.38	0.78	0.83	6.97	41646	4176	72	0	263	7207	0	logfile
✔	7UA5	26415	2023-07-14	2022-03-11	2.83	3.22	—	1.8	0.003	0.78	0.0	0.04	14.59	0.01	1.909	11.04	1.41	3.1	96.8	0.1	0.85	0.86	0.82	2.90	1.8	0.005	0.72	0.0	0.04	15.22	0.00	2.055	10.64	0.43	3.4	96.5	0.1	1.11	0.45	0.87	0.86	3.22	138608	17324	12	0	12	0	0	logfile
✔	7Y5S	33623	2023-07-06	2022-06-17	3.0	2.29	2.98	2.9	0.003	0.63	0.0	0.05	12.39	0.01	2.185	9.34	0.00	7.0	93.0	0.0	-2.10	0.75	0.70	2.12	1.8	0.004	0.73	0.0	0.05	15.70	0.00	2.173	15.21	3.22	8.5	91.5	0.0	-2.15	1.35	0.79	0.79	3.18	11535	1515	3	0	0	0	0	logfile
✔	8DWG	27753	2023-07-04	2022-08-01	2.71	2.08	2.72	1.8	0.006	0.64	0.0	0.05	12.61	0.00	2.106	6.68	0.00	4.5	95.5	0.0	-1.14	0.78	0.81	4.92	1.8	0.005	0.63	0.0	0.04	15.14	0.00	2.082	6.68	1.52	5.0	95.0	0.0	0.71	0.32	0.80	0.84	3.67	8350	1101	7	0	1	0	0	logfile
✔	7C7S	30301	2023-07-05	2020-05-26	2.9	2.38	—	1.8	0.006	0.78	0.0	0.14	13.43	0.01	2.153	7.86	0.00	3.7	96.3	0.0	-2.62	0.83	0.80	2.82	1.8	0.004	0.72	0.0	0.04	15.80	0.00	2.180	9.32	2.88	4.0	96.0	0.0	-0.18	0.59	0.85	0.83	2.59	10915	1355	4	0	9	0	0	logfile
✔	7SX3	25492	2023-07-17	2021-11-22	3.1	2.52	3.30	1.7	0.004	0.66	0.0	0.04	14.42	0.01	2.199	3.25	0.00	2.8	97.2	0.0	0.09	0.73	0.81	2.40	1.8	0.003	0.62	0.0	0.04	16.33	0.00	2.092	6.77	0.19	2.4	97.6	0.0	2.19	0.47	0.74	0.84	1.76	37959	4608	6	0	85	0	0	logfile
✔	7UUR	26801	2023-07-07	2022-04-28	1.67	1.76	1.67	1.8	0.061	2.45	3.0	0.98	14.57	0.01	1.674	7.19	0.44	2.5	97.2	0.2	-0.89	0.76	0.87	7.87	1.8	0.007	2.49	0.0	0.07	14.70	0.01	1.611	10.87	0.29	2.1	97.9	0.0	0.19	0.27	0.77	0.88	7.79	13683	1668	12	0	18	603	0	logfile

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