Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6DJP	7939	2023-02-18	2018-05-25	4.8	5.02	—	4.8	0.011	2.00	0.0	0.08	5.34	0.01	2.368	0.45	0.00	4.6	95.4	0.0	-0.74	0.76	0.65	—	4.8	0.008	1.21	0.0	0.05	9.04	0.01	2.147	20.90	0.00	24.7	74.9	0.4	-4.58	1.22	0.82	0.76	—	7307	1393	16	0	23	0	0	logfile
✔	7R9E	24324	2023-02-18	2021-06-29	4.0	4.83	—	3.9	0.002	0.37	0.0	0.04	4.45	0.00	2.277	3.11	0.00	9.9	88.7	1.4	-3.58	0.87	0.80	—	3.9	0.002	0.56	0.0	0.04	9.08	0.00	2.177	7.90	0.00	5.0	95.0	0.0	0.09	1.76	0.88	0.82	—	7726	505	1	0	0	0	3938	logfile
✔	6XTB	10618	2023-02-16	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.005	1.12	0.0	0.05	9.13	0.00	2.119	10.22	0.00	25.1	74.9	0.0	-5.72	2.48	0.34	0.65	—	1161	235	1	0	0	0	0	logfile
✔	7R9M	24329	2023-02-18	2021-06-29	4.0	4.58	—	3.9	0.002	0.38	0.0	0.04	4.68	0.00	2.214	3.88	0.00	8.3	90.9	0.8	-4.83	0.85	0.77	—	3.9	0.002	0.54	0.0	0.04	9.14	0.00	2.110	9.06	0.00	2.6	97.4	0.0	-0.08	1.73	0.86	0.79	—	7727	505	1	0	0	0	3939	logfile
✔	7BZX	30262	2023-02-17	2020-04-28	4.0	4.19	—	3.2	0.019	2.22	9.0	0.12	8.56	0.01	2.485	2.40	0.00	6.6	92.1	1.3	-2.90	0.47	0.25	—	2.8	0.006	1.18	0.0	0.05	9.20	0.01	2.035	27.91	0.00	24.1	75.8	0.1	-4.93	2.97	0.75	0.58	—	5652	1154	2	0	0	0	0	logfile
✔	6UVS	20915	2023-02-22	2019-11-04	4.2	4.33	—	4.2	0.010	1.17	0.0	0.06	9.04	0.01	2.148	2.19	0.00	16.0	84.0	0.0	-4.91	0.68	0.79	—	4.2	0.002	0.62	0.0	0.04	9.23	0.01	1.899	1.10	0.00	7.2	92.8	0.0	2.03	0.86	0.73	0.85	—	17040	1920	12	0	0	0	5976	logfile
✔	6Y50	10688	2023-02-21	2020-02-24	4.1	4.22	—	4.0	0.003	0.52	0.0	0.04	6.93	0.00	0.761	13.95	0.00	5.9	93.9	0.2	-3.48	0.68	0.68	—	4.0	0.003	0.63	0.0	0.04	9.28	0.00	2.033	7.63	0.00	11.1	88.8	0.1	-1.16	0.53	0.72	0.73	—	14916	2537	10	50	3	0	0	logfile
✔	7MJQ	23882	2023-02-21	2021-04-20	4.2	4.29	—	4.2	0.009	1.55	0.0	0.15	8.06	0.01	1.552	6.01	0.00	9.4	90.6	0.0	-1.25	0.52	0.66	—	4.2	0.005	0.95	0.0	0.05	9.32	0.01	2.128	5.46	0.00	18.6	81.3	0.2	-3.11	1.84	0.60	0.76	—	14976	2982	13	0	10	0	0	logfile
✔	7ABH	11696	2023-02-22	2020-09-07	4.5	4.60	—	4.4	0.003	0.63	0.0	0.05	9.27	0.00	1.529	2.09	0.00	6.0	93.7	0.2	-2.78	0.75	0.77	—	4.4	0.003	0.65	0.0	0.04	9.66	0.00	2.165	3.43	0.00	9.0	91.0	0.0	-0.47	1.31	0.77	0.80	—	17922	3288	16	65	0	0	0	logfile
✔	6K9L	9950	2023-02-27	2019-06-16	4.27	4.50	—	4.2	0.001	0.49	0.0	0.04	9.31	0.00	2.240	4.75	4.95	4.6	95.4	0.0	-3.11	0.84	0.71	—	4.2	0.002	0.68	0.0	0.04	9.69	0.00	2.113	12.20	0.00	7.1	92.9	0.0	0.72	1.80	0.85	0.75	—	30601	5103	2	0	0	0	0	logfile
✔	7JW0	22512	2023-02-25	2020-08-24	4.3	4.63	4.41	4.4	0.010	1.51	6.0	0.09	8.08	0.01	2.527	0.37	0.00	2.3	97.5	0.1	1.05	0.81	0.71	—	4.4	0.003	0.63	0.0	0.05	9.70	0.00	2.194	4.75	0.00	2.7	97.3	0.0	0.52	1.28	0.84	0.78	—	26251	4314	27	0	69	0	0	logfile
✔	6PKW	20368	2023-02-25	2019-06-30	4.5	4.77	—	4.4	0.007	0.94	0.0	0.05	9.19	0.01	2.239	4.10	0.00	5.8	94.2	0.0	-3.48	0.66	0.78	—	4.4	0.003	0.57	0.0	0.04	9.81	0.00	2.240	7.64	0.00	4.9	95.1	0.0	1.63	1.63	0.67	0.79	—	26262	4056	4	0	88	0	0	logfile
✔	5Y81	6816	2023-02-28	2017-08-18	4.7	4.77	—	4.6	0.012	1.24	3.0	0.06	11.53	0.01	1.581	41.26	14.19	15.5	79.2	5.3	-5.73	0.66	0.69	—	4.6	0.003	0.72	0.0	0.04	9.83	0.00	2.062	10.61	0.10	9.3	89.7	1.0	0.85	0.83	0.70	0.73	—	25723	4095	8	0	360	0	0	logfile
✔	6PKV	20367	2023-02-26	2019-06-30	4.3	4.49	—	4.3	0.005	0.86	0.0	0.05	8.98	0.01	2.311	3.51	0.00	4.7	95.3	0.0	-3.45	0.67	0.78	—	4.3	0.003	0.60	0.0	0.04	9.87	0.00	2.258	7.99	0.00	4.9	95.1	0.0	1.30	1.92	0.68	0.79	—	28284	4260	4	0	88	0	0	logfile
✔	5V4S	8633	2023-02-19	2017-03-10	4.2	7.95	—	4.2	0.012	1.56	20.0	0.14	8.80	0.01	2.352	3.29	0.00	6.6	93.1	0.3	-1.95	0.55	0.60	—	4.2	0.003	0.62	0.0	0.04	9.90	0.00	2.233	11.27	0.00	2.1	97.9	0.0	2.80	0.88	0.62	0.70	—	10756	1548	4	0	0	0	0	logfile
✔	6WBi	21590	2023-02-20	2020-03-26	4.39	4.98	—	3.3	0.015	0.91	0.0	0.04	10.97	0.01	2.117	12.12	1.00	4.8	95.1	0.0	-0.82	0.70	0.80	—	3.3	0.002	0.61	0.0	0.04	9.93	0.00	2.206	5.78	0.00	2.2	97.8	0.0	3.37	0.52	0.72	0.84	—	13018	2284	8	0	1	0	0	logfile
✔	6NB7	0404	2023-02-25	2018-12-06	4.5	4.89	—	4.6	0.015	1.44	1.0	0.09	9.14	0.01	2.330	0.87	0.97	3.2	96.6	0.2	0.24	0.80	0.71	—	4.6	0.003	0.70	0.0	0.05	10.25	0.00	2.143	7.01	0.00	4.1	95.8	0.0	-0.39	0.88	0.83	0.78	—	24718	3828	49	0	137	0	0	logfile
✔	5LiJ	4054	2023-02-16	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	25.64	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.005	1.18	0.0	0.04	10.31	0.00	2.148	15.12	0.00	32.0	68.0	0.0	-5.66	1.48	0.86	0.78	—	761	152	1	0	0	0	0	logfile
✔	5A6E	3062	2023-02-20	2015-06-25	4.5	6.76	—	5.1	0.010	3.73	0.0	0.05	15.55	0.01	2.112	8.77	3.19	11.1	88.8	0.2	-5.00	0.36	0.56	—	4.8	0.004	0.60	0.0	0.03	10.41	0.00	2.080	11.78	0.00	5.3	94.7	0.0	-0.72	1.45	0.40	0.73	—	11093	634	4	0	182	0	5102	logfile
✔	6i26	0328	2023-02-24	2018-10-31	4.3	4.37	—	4.2	0.005	0.89	0.0	0.05	8.22	0.01	0.411	6.12	0.50	6.4	93.3	0.3	-6.25	0.75	0.60	—	4.2	0.002	0.67	0.0	0.04	10.47	0.00	2.212	4.82	0.00	5.8	94.2	0.0	0.06	0.96	0.83	0.76	—	22765	3366	1	0	221	0	0	logfile

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