Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3J89	6123	2023-02-18	2014-10-07	3.6	2.21	—	3.5	0.022	1.64	0.0	0.10	11.97	0.01	2.578	2.11	0.00	3.5	96.5	0.0	-0.96	0.83	0.81	0.77	3.2	0.003	0.49	0.0	0.03	20.68	0.00	2.114	8.31	1.00	0.6	99.4	0.0	3.03	1.98	0.81	0.79	0.31	9025	551	19	0	0	0	4598	logfile
✔	3J5P	5778	2023-02-22	2013-10-28	3.275	3.63	3.36	3.4	0.011	1.53	0.0	0.09	21.59	0.01	1.156	79.06	27.79	5.7	94.3	0.0	-0.42	0.62	0.55	0.56	3.3	0.003	0.87	0.0	0.04	17.05	0.00	2.126	17.13	0.41	5.1	94.8	0.1	0.54	2.08	0.73	0.79	0.31	18636	2324	4	0	44	0	0	logfile
✔	7UNK	26625	2023-02-21	2022-04-11	3.45	3.69	3.50	3.6	0.003	0.66	0.0	0.04	15.44	0.01	2.169	7.74	0.75	3.0	97.0	0.0	1.09	0.72	0.83	0.68	3.6	0.003	0.63	0.0	0.04	16.91	0.00	2.175	8.87	0.42	2.9	97.1	0.0	1.47	0.49	0.76	0.88	0.31	10992	1401	4	0	0	0	0	logfile
✔	7RYE	24735	2023-02-23	2021-08-25	3.9	4.10	—	4.0	0.003	0.65	0.0	0.04	14.57	0.00	2.090	14.13	0.00	3.7	96.3	0.0	1.07	0.76	0.69	-0.18	4.0	0.004	0.75	0.0	0.04	17.66	0.00	2.049	16.16	0.42	4.3	95.7	0.0	1.29	1.09	0.81	0.79	0.32	19708	2535	24	0	0	0	0	logfile
✔	7QPG	14120	2023-02-22	2022-01-04	3.9	4.08	—	2.8	0.002	0.54	0.0	0.04	10.05	0.00	2.093	6.85	0.00	2.7	97.3	0.0	0.34	0.78	0.58	0.22	2.3	0.003	0.67	0.0	0.04	13.10	0.00	2.137	11.17	0.11	3.0	97.0	0.0	1.12	0.84	0.88	0.76	0.33	57164	7156	6	0	0	0	0	logfile
✔	7oZH	13124	2023-02-17	2021-06-28	3.02	3.20	1.84	3.3	0.024	1.40	0.0	0.09	7.44	0.01	2.546	14.72	0.00	5.4	94.6	0.0	-2.78	0.33	0.60	4.68	3.2	0.004	0.69	0.0	0.05	15.03	0.00	2.382	17.11	2.05	8.2	91.8	0.0	-2.61	2.53	0.40	0.69	0.33	3890	580	10	0	0	0	0	logfile
✔	6PB1	26104	2023-02-18	2019-06-12	2.8	2.98	—	40.0	0.003	0.79	0.0	0.06	8.98	0.01	2.288	4.32	0.00	1.9	98.1	0.0	-2.93	0.05	0.02	0.34	2.9	0.003	0.65	0.0	0.04	14.12	0.00	2.156	12.00	2.15	3.2	96.8	0.0	-0.89	2.36	0.11	0.20	0.34	8785	1069	7	0	9	0	0	logfile
✔	6K9F	9948	2023-02-22	2019-06-15	3.7	7.50	4.15	7.2	0.002	0.45	0.0	0.03	11.87	0.00	2.356	5.29	0.00	0.0	100.0	0.0	-0.68	0.66	0.76	0.04	4.6	0.004	1.22	0.0	0.05	17.69	0.00	2.013	28.27	0.53	1.4	98.6	0.0	-0.68	3.70	0.67	0.84	0.35	8484	1044	12	0	0	0	0	logfile
✔	6TA3	10421	2023-02-19	2019-10-29	3.8	4.18	—	3.9	0.024	2.45	4.0	0.08	18.76	0.01	0.317	210.72	16.02	0.8	99.2	0.0	1.86	0.67	0.49	0.26	4.0	0.004	0.87	0.0	0.05	17.69	0.01	1.221	29.86	0.58	3.4	96.6	0.0	-0.26	2.45	0.78	0.74	0.35	9491	1201	6	0	5	0	0	logfile
✔	7FG3	31577	2023-02-18	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.23	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.004	0.92	0.0	0.05	16.64	0.01	2.088	24.71	0.10	15.3	84.1	0.5	-3.68	0.78	0.23	0.45	0.35	9054	1166	2	0	0	0	0	logfile
✔	6PMi	20394	2023-02-22	2019-07-02	3.86	4.66	—	4.1	0.012	1.26	0.0	0.06	15.81	0.01	1.949	12.35	0.24	10.7	88.9	0.4	-4.48	0.69	0.51	0.20	4.1	0.004	0.70	0.0	0.04	17.32	0.00	1.819	21.88	0.54	10.0	89.9	0.1	-2.32	1.00	0.86	0.77	0.35	57985	3453	10	110	4	0	28610	logfile
✔	7T5o	25699	2023-02-23	2021-12-12	3.39	3.68	—	3.5	0.007	1.38	6.0	0.08	13.25	0.01	2.295	3.59	0.00	5.1	94.9	0.0	-2.90	0.56	0.47	0.35	3.6	0.004	0.76	0.0	0.05	15.65	0.00	2.099	14.66	0.59	6.7	93.3	0.0	-1.64	1.27	0.67	0.62	0.36	21263	2758	5	0	0	0	0	logfile
✔	7MVU	24056	2023-02-25	2021-05-15	3.77	4.87	3.73	4.0	0.002	0.36	0.0	0.03	6.38	0.00	2.187	3.55	0.00	1.1	98.9	0.0	-0.33	0.85	0.73	0.19	4.0	0.003	0.58	0.0	0.03	11.75	0.00	1.882	11.93	0.22	3.2	96.8	0.0	2.54	2.06	0.88	0.82	0.36	25645	1604	2	0	0	0	12841	logfile
✔	6ZGE	23580	2023-02-26	2020-06-18	2.6	2.72	2.67	20.0	0.009	0.91	0.0	0.06	12.46	0.01	2.344	2.22	0.73	4.7	95.2	0.1	-0.97	0.06	0.00	0.14	20.0	0.005	0.78	0.0	0.05	13.62	0.00	2.128	9.50	1.01	4.8	95.2	0.0	-0.90	0.80	0.12	0.12	0.37	26991	3294	39	0	81	48	0	logfile
✔	7o6B	12737	2023-02-21	2021-04-09	3.88	4.21	4.15	3.8	0.003	0.67	0.0	0.04	11.54	0.01	2.128	6.00	0.38	4.3	95.7	0.0	-0.87	0.75	0.67	0.37	3.8	0.002	0.56	0.0	0.04	14.10	0.00	2.026	9.46	0.13	3.6	96.4	0.0	0.66	1.15	0.76	0.69	0.37	14200	879	1	0	0	0	7040	logfile
✔	7SoY	25363	2023-02-20	2021-11-01	3.4	4.73	—	3.7	0.003	0.63	0.0	0.04	12.63	0.00	2.231	12.96	0.37	1.7	98.3	0.0	1.32	0.90	0.83	0.53	3.7	0.003	0.64	0.0	0.04	14.33	0.00	2.076	14.51	0.22	2.4	97.6	0.0	1.48	0.49	0.91	0.85	0.39	12180	1529	4	0	0	0	0	logfile
✔	7ZPJ	14855	2023-02-24	2022-04-27	3.81	3.24	3.86	6.5	0.004	0.86	0.0	0.05	13.19	0.01	2.159	2.94	0.67	3.3	96.7	0.0	0.22	0.54	0.33	0.15	2.1	0.004	0.69	0.0	0.04	15.40	0.01	1.881	14.65	0.75	4.9	95.1	0.0	-0.12	1.51	0.64	0.57	0.39	23479	1355	3	55	0	0	11508	logfile
✔	6W62	21551	2023-02-18	2020-03-16	3.9	4.04	—	4.0	0.003	0.64	1.0	0.04	14.23	0.00	1.883	16.29	0.00	10.2	89.4	0.3	-2.04	0.71	0.67	1.02	4.0	0.003	0.75	0.0	0.04	16.90	0.00	2.135	17.07	1.04	9.6	90.4	0.0	-1.75	1.21	0.72	0.68	0.39	7387	910	2	24	0	0	0	logfile
✔	7WM4	32599	2023-02-25	2022-01-14	3.2	4.44	—	3.2	0.002	0.52	0.0	0.04	15.51	0.00	2.140	9.94	0.08	4.9	95.1	0.1	-1.73	0.86	0.70	0.72	3.2	0.003	0.66	0.0	0.04	17.39	0.00	2.110	20.49	0.12	8.7	91.1	0.2	-2.38	1.34	0.87	0.77	0.40	25848	2658	38	162	82	0	0	logfile
✔	7WVP	32856	2023-02-27	2022-02-10	3.7	3.43	—	3.8	0.005	0.85	2.0	0.06	13.45	0.01	2.335	3.35	0.40	3.9	95.9	0.1	-4.59	0.70	0.59	0.30	3.8	0.004	0.82	1.0	0.05	15.92	0.00	2.060	17.53	0.61	5.2	94.8	0.0	-1.57	1.54	0.75	0.67	0.41	29601	3750	4	0	0	0	0	logfile

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