Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7FG3	31577	2022-05-13	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.34	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.009	0.98	0.0	0.05	16.79	0.01	2.094	24.09	0.30	15.7	83.7	0.6	-3.71	0.78	0.23	0.45	0.29	9054	1166	2	0	0	0	0	logfile
✔	7o7R	12754	2022-05-17	2021-04-13	3.9	4.51	—	4.3	0.013	1.32	8.0	0.07	16.26	0.01	1.912	21.03	1.07	18.3	81.4	0.3	-5.78	0.83	0.75	0.13	4.3	0.007	1.05	1.0	0.05	17.18	0.01	1.930	21.53	0.74	10.2	89.7	0.1	-3.28	0.86	0.83	0.75	0.30	40530	5126	16	0	40	0	0	logfile
✔	6Q97	4476	2022-05-25	2018-12-17	3.9	3.69	—	20.0	0.011	1.20	0.0	0.16	18.93	0.02	1.320	7.03	0.38	10.1	89.8	0.1	-5.34	0.15	0.01	0.22	3.6	0.008	1.00	0.0	0.05	20.31	0.01	0.925	23.65	0.12	10.6	89.4	0.0	-3.47	2.14	0.26	0.21	0.31	156609	6124	72	5051	441	2	0	logfile
✔	6TQM	10555	2022-05-17	2019-12-16	3.8	4.34	3.78	20.0	0.014	0.98	0.0	0.12	15.01	0.01	2.083	4.06	1.40	14.5	85.5	0.0	-5.95	0.30	0.07	0.30	3.8	0.011	1.11	1.0	0.04	15.94	0.00	1.851	15.53	0.43	10.5	89.5	0.0	-3.67	1.07	0.36	0.21	0.31	39616	2578	6	0	4	0	19804	logfile
✔	6QZF	4685	2022-05-14	2019-03-11	3.8	4.25	—	4.1	0.010	1.06	0.0	0.06	10.18	0.01	2.143	10.35	0.16	9.8	90.1	0.0	-4.87	0.67	0.72	0.54	4.1	0.005	0.95	0.0	0.05	17.11	0.01	2.016	28.19	1.07	8.7	91.3	0.0	-1.90	1.73	0.66	0.72	0.32	71628	8880	60	0	0	0	0	logfile
✔	7QPG	14120	2022-05-12	2022-01-04	3.9	4.08	—	2.8	0.002	0.54	0.0	0.04	10.05	0.00	2.093	7.04	0.00	2.7	97.3	0.0	0.34	0.78	0.58	0.22	2.4	0.006	0.80	0.0	0.04	13.15	0.00	1.840	14.65	0.12	3.1	96.9	0.0	1.00	0.83	0.87	0.74	0.32	57164	7156	6	0	0	0	0	logfile
✔	6UMM	20820	2022-05-15	2019-10-09	3.7	6.74	4.15	4.0	0.006	0.79	0.0	0.04	13.23	0.00	2.203	12.00	0.17	4.8	95.2	0.0	-2.07	0.55	0.56	-0.10	4.1	0.004	0.92	0.0	0.05	14.46	0.00	2.056	24.51	0.70	4.4	95.6	0.0	0.76	1.20	0.62	0.83	0.32	23658	3184	10	0	0	0	0	logfile
✔	7RYE	24735	2022-05-14	2021-08-25	3.9	4.10	—	4.0	0.003	0.65	0.0	0.04	14.57	0.00	2.090	14.13	0.00	3.7	96.3	0.0	1.07	0.76	0.69	-0.18	4.0	0.004	0.77	0.0	0.04	17.72	0.01	2.110	15.54	0.56	4.1	95.9	0.0	1.33	1.08	0.81	0.79	0.33	19708	2535	24	0	0	0	0	logfile
✔	3JCE	6550	2022-05-24	2015-12-01	3.2	4.36	—	14.0	0.008	0.88	0.0	0.04	14.83	0.00	1.106	32.70	0.47	10.4	84.8	4.8	-2.93	0.33	0.04	0.16	3.2	0.007	1.06	3.0	0.05	17.20	0.01	1.577	41.40	0.19	11.5	87.2	1.3	-3.17	1.17	0.63	0.30	0.33	154017	6546	59	4798	2	0	0	logfile
✔	5LKH	4068	2022-05-17	2016-07-22	3.46	5.27	—	11.0	0.018	2.37	65.0	0.12	12.66	0.02	2.255	87.25	1.96	3.4	95.2	1.4	-0.27	0.38	0.17	-0.03	8.8	0.004	0.83	0.0	0.04	15.55	0.01	2.085	26.64	0.22	6.6	93.4	0.0	-0.75	2.06	0.50	0.56	0.33	37345	4740	5	0	0	0	0	logfile
✔	5KPW	8281	2022-05-24	2016-07-05	3.9	5.27	4.08	3.8	0.007	1.11	5.0	0.09	13.85	0.01	2.191	24.19	0.79	12.9	81.4	5.7	-4.53	0.90	0.77	0.51	3.9	0.005	0.74	0.0	0.04	16.08	0.01	1.992	32.40	0.66	11.3	87.8	0.8	-2.27	1.78	0.95	0.90	0.34	154603	6623	59	4812	0	0	0	logfile
✔	6TA3	10421	2022-05-13	2019-10-29	3.8	4.18	—	3.9	0.024	2.45	4.0	0.08	18.76	0.01	0.317	210.77	16.02	0.8	99.2	0.0	1.86	0.67	0.49	0.26	4.0	0.008	1.20	1.0	0.05	17.85	0.01	1.307	34.27	0.00	3.2	96.8	0.0	-0.17	2.41	0.77	0.73	0.34	9491	1201	6	0	5	0	0	logfile
✔	5UYQ	8620	2022-05-24	2017-02-24	3.8	4.28	4.16	3.7	0.007	1.05	0.0	0.09	14.22	0.01	1.314	14.39	1.29	13.9	83.4	2.7	-5.24	0.86	0.79	0.45	3.5	0.006	0.83	0.0	0.04	17.23	0.01	1.067	34.38	0.95	15.2	84.5	0.2	-3.26	1.11	0.87	0.82	0.35	153759	6476	63	4810	2	0	0	logfile
✔	6Z5U	11082	2022-05-14	2020-05-27	3.9	4.52	—	38.0	0.021	1.88	10.0	0.11	11.93	0.01	0.901	4.94	1.69	2.0	97.7	0.3	-0.47	0.18	0.03	-0.06	4.1	0.008	0.89	1.0	0.04	14.43	0.01	2.092	11.99	0.15	4.7	95.2	0.0	-0.06	1.51	0.27	0.13	0.35	17880	2334	14	0	4	0	0	logfile
✔	6XQB	22288	2022-05-14	2020-07-09	3.4	4.22	—	3.9	0.012	1.28	0.0	0.06	12.24	0.01	2.069	14.03	0.23	15.2	84.8	0.0	-5.15	0.75	0.57	0.58	3.9	0.003	0.69	0.0	0.04	14.31	0.00	1.950	21.99	0.00	9.2	90.8	0.0	-2.55	1.31	0.76	0.60	0.36	16323	1008	7	15	3	0	7987	logfile
✔	6Y7C	10713	2022-05-15	2020-02-28	3.8	5.42	3.84	2.8	0.015	1.44	1.0	0.06	18.61	0.01	0.193	10.36	1.00	14.3	85.4	0.3	-5.44	0.89	0.71	0.41	2.6	0.013	0.89	0.0	0.04	18.71	0.01	1.942	32.34	0.30	14.2	85.6	0.1	-3.61	2.57	0.92	0.79	0.36	79690	5381	34	1735	0	0	0	logfile
✔	6NQB	0482	2022-05-17	2019-01-20	3.8	4.35	—	4.0	0.006	0.98	0.0	0.05	17.60	0.01	2.216	8.05	0.41	13.6	86.3	0.1	-5.36	0.86	0.79	0.88	4.0	0.009	0.94	1.0	0.04	18.12	0.01	1.627	28.50	0.41	15.1	84.8	0.1	-3.39	0.72	0.87	0.79	0.36	42570	1752	17	1341	1	0	0	logfile
✔	6RAX	4786	2022-05-17	2019-04-08	3.99	4.07	3.97	4.1	0.011	1.46	27.0	0.13	18.03	0.01	1.308	24.00	6.70	19.2	80.3	0.5	-5.61	0.55	0.58	0.25	4.0	0.006	0.87	0.0	0.04	18.40	0.01	2.102	15.60	0.72	11.8	88.2	0.0	-3.06	1.49	0.57	0.55	0.36	40970	5062	19	29	6	0	0	logfile
✔	7VUJ	32130	2022-05-13	2021-11-02	3.8	2.78	—	2.1	0.004	0.73	0.0	0.04	13.44	0.01	1.960	19.65	0.00	6.0	93.9	0.1	-0.35	0.64	0.63	0.83	3.1	0.004	0.79	0.0	0.05	16.46	0.01	2.039	21.72	0.67	6.8	93.2	0.1	-0.81	0.63	0.65	0.64	0.36	8286	1034	7	1	2	0	0	logfile
✔	6o9J	0661	2022-05-18	2019-03-14	3.9	3.92	—	3.9	0.006	1.25	25.0	0.10	17.39	0.01	0.154	55.38	23.17	26.6	58.7	14.7	-7.10	0.74	0.66	0.16	3.9	0.011	1.09	10.0	0.05	17.02	0.01	1.293	32.80	0.58	23.4	73.7	3.0	-4.89	1.14	0.79	0.75	0.36	142682	5731	53	4564	0	0	0	logfile

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