Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7L7Q	23216	2021-12-01	2020-12-30	3.7	4.37	—	4.0	0.005	0.91	0.0	0.05	15.54	0.00	1.873	23.67	0.16	10.2	89.5	0.3	-4.40	0.84	0.81	0.86	4.1	0.004	0.94	0.0	0.05	17.56	0.00	2.094	21.82	0.16	8.4	91.6	0.0	-0.23	1.44	0.84	0.79	0.84	5619	687	3	0	0	0	0	logfile
✔	6PZA	20530	2021-12-01	2019-07-31	3.74	3.92	—	3.9	0.007	1.05	0.0	0.06	10.78	0.01	2.252	3.22	0.00	8.0	92.0	0.0	-4.29	0.51	0.50	0.87	3.8	0.011	1.09	1.0	0.04	15.29	0.01	2.186	9.72	1.30	5.9	94.1	0.0	0.20	1.26	0.63	0.80	0.86	9659	1441	3	0	2	0	0	logfile
✔	6NY3	8980	2021-12-02	2019-02-10	3.7	4.08	—	4.0	0.009	1.13	0.0	0.06	19.98	0.01	2.251	4.71	0.33	16.9	82.5	0.6	-5.84	0.76	0.84	1.41	4.0	0.008	1.04	0.0	0.04	20.12	0.01	2.138	11.16	0.00	16.8	83.0	0.3	-2.41	0.40	0.67	0.81	0.87	10214	794	4	164	121	0	0	logfile
✔	6DMB	7963	2021-12-01	2018-06-04	3.9	4.13	—	4.0	0.009	1.35	0.0	0.07	13.32	0.01	2.266	6.34	1.94	13.2	86.2	0.6	-4.55	0.61	0.78	2.39	4.0	0.005	0.88	0.0	0.05	15.88	0.01	2.132	13.63	1.46	13.6	86.4	0.0	-0.90	1.80	0.63	0.79	0.87	7945	990	1	0	9	0	0	logfile
✔	5UAR	8461	2021-12-01	2016-12-19	3.73	4.36	—	4.4	0.008	1.18	0.0	0.06	13.30	0.00	2.393	0.26	1.06	7.4	92.5	0.1	-3.58	0.58	0.77	1.39	4.3	0.003	0.73	0.0	0.04	16.17	0.00	2.132	10.94	0.48	4.4	95.6	0.0	-0.31	1.53	0.61	0.79	0.88	9489	1184	1	0	2	0	0	logfile
✔	6JRR	9879	2021-12-01	2019-04-05	3.9	4.09	—	3.9	0.010	1.14	4.0	0.06	15.90	0.01	1.827	8.44	0.80	10.2	89.5	0.2	-5.20	0.76	0.81	1.54	3.9	0.004	0.74	0.0	0.04	17.00	0.01	2.150	13.35	0.48	9.8	90.1	0.1	-1.81	0.59	0.76	0.81	0.89	109132	14268	12	0	16	0	0	logfile
✔	5LL6	4071	2021-12-01	2016-07-26	3.9	4.01	—	3.9	0.012	1.50	6.0	0.11	19.06	0.01	0.924	5.03	2.53	10.6	85.7	3.7	-3.86	0.69	0.82	1.20	3.9	0.005	0.82	0.0	0.04	18.75	0.01	1.640	19.02	0.42	10.9	88.1	1.0	-2.59	0.80	0.69	0.80	0.89	55262	3429	20	1325	5	0	0	logfile
✔	6M3W	30072	2021-12-01	2020-03-04	3.9	4.04	—	3.9	0.011	1.29	0.0	0.08	15.00	0.01	2.264	9.72	0.66	11.1	88.9	0.0	-4.25	0.82	0.78	1.15	3.9	0.004	0.76	0.0	0.05	18.67	0.00	2.120	17.80	0.33	8.2	91.8	0.0	-1.83	0.93	0.82	0.78	0.90	8307	1032	6	0	24	0	0	logfile
✔	6Z3Z	11067	2021-12-01	2020-05-22	3.19	3.90	—	3.6	0.003	0.62	0.0	0.04	13.78	0.00	2.198	8.80	0.31	6.4	93.6	0.0	-0.26	0.62	0.69	0.75	3.7	0.010	1.06	0.0	0.04	15.74	0.01	2.225	15.97	0.46	7.7	92.3	0.0	0.03	0.66	0.63	0.72	0.90	6115	769	2	0	0	0	0	logfile
✔	7FAS	31505	2021-12-02	2021-07-07	3.6	2.95	—	3.7	0.002	0.52	0.0	0.04	15.63	0.00	2.193	9.05	0.09	4.1	95.9	0.0	0.85	0.72	0.73	0.88	3.7	0.003	0.54	0.0	0.04	17.34	0.00	2.180	9.50	0.09	5.0	95.0	0.0	1.02	0.44	0.73	0.75	0.92	10173	1229	1	0	0	0	0	logfile
✔	6M4H	30078	2021-12-01	2020-03-07	3.9	4.39	—	3.9	0.008	0.89	0.0	0.05	29.18	0.01	1.729	27.61	2.85	3.1	96.7	0.2	-6.02	0.82	0.76	1.36	4.0	0.007	0.81	0.0	0.04	29.96	0.01	2.095	21.36	0.89	3.6	96.4	0.0	0.94	1.75	0.87	0.85	0.92	9420	656	10	206	0	0	0	logfile
✔	7P5M	13201	2021-12-01	2021-07-14	3.92	3.54	3.67	3.7	0.003	0.55	0.0	0.04	14.29	0.00	2.209	8.88	0.00	0.9	99.1	0.0	3.52	0.51	0.77	1.01	3.7	0.016	1.49	1.0	0.04	17.09	0.01	1.835	13.48	0.46	0.9	99.1	0.0	3.87	0.43	0.54	0.77	0.92	6204	788	8	0	12	0	0	logfile
✔	6UZ3	20951	2021-12-01	2019-11-14	3.5	3.88	—	3.8	0.022	1.32	3.0	0.15	17.52	0.01	1.260	32.21	1.05	11.2	88.5	0.4	-3.89	0.42	0.70	1.32	3.8	0.005	0.86	0.0	0.05	17.39	0.01	2.070	18.82	0.84	7.6	92.3	0.1	-0.71	0.66	0.42	0.70	0.92	9446	1126	1	0	25	0	0	logfile
✔	6oEU	7795	2021-12-01	2019-03-27	3.5	3.62	—	3.9	0.014	1.89	3.0	0.11	15.00	0.00	2.157	5.92	0.85	10.3	89.6	0.1	-3.81	0.41	0.65	1.69	3.7	0.014	1.42	0.0	0.04	16.64	0.01	1.735	14.63	0.28	8.5	91.4	0.1	-0.52	1.53	0.47	0.69	0.92	7310	964	1	0	8	0	0	logfile
✔	6F36	4176	2021-12-01	2017-11-28	3.7	2.63	—	3.9	0.010	1.13	0.0	0.07	11.06	0.01	2.304	7.63	0.27	5.1	94.9	0.0	-5.92	0.82	0.70	1.42	3.8	0.003	0.73	0.0	0.04	14.88	0.00	2.170	13.11	0.80	2.4	97.6	0.0	0.25	0.89	0.83	0.72	0.93	7453	1039	12	0	0	0	0	logfile
✔	6F1Y	4171	2021-12-01	2017-11-23	3.4	4.18	—	3.6	0.011	1.94	0.0	0.09	11.72	0.01	2.069	14.25	0.74	17.2	82.6	0.2	-4.92	0.50	0.74	0.93	3.6	0.004	0.88	0.0	0.04	15.64	0.00	2.238	16.59	0.49	9.8	90.2	0.0	-1.19	2.15	0.50	0.76	0.93	4316	472	2	0	111	0	0	logfile
✔	5MZ6	3583	2021-12-01	2017-01-31	3.8	3.83	—	3.8	0.005	1.05	0.0	0.05	11.57	0.01	2.269	8.71	0.70	5.2	94.8	0.0	-5.37	0.65	0.71	2.07	3.8	0.003	0.77	0.0	0.04	15.94	0.00	2.192	15.97	0.70	3.5	96.5	0.0	-0.05	0.82	0.75	0.77	0.94	8401	1092	2	0	0	0	0	logfile
✔	7KA3	22757	2021-12-02	2020-09-29	3.3	3.20	—	3.4	0.004	0.76	0.0	0.04	13.66	0.01	2.294	3.99	0.36	2.9	97.1	0.0	-2.21	0.76	0.82	1.82	3.3	0.003	0.52	0.0	0.04	15.76	0.00	2.240	6.98	0.00	4.4	95.6	0.0	1.93	0.47	0.77	0.84	0.94	10472	1372	4	0	0	0	0	logfile
✔	6Xi8	22191	2021-12-01	2020-06-19	3.64	2.63	3.78	2.0	0.010	1.69	4.0	0.11	15.71	0.01	1.333	6.49	0.77	9.0	91.0	0.0	-4.62	0.66	0.54	0.71	2.0	0.004	1.19	0.0	0.05	17.71	0.01	2.174	18.85	0.77	8.5	91.5	0.0	-2.29	1.24	0.68	0.64	0.95	5022	636	4	0	2	0	0	logfile
✔	7FDG	31542	2021-12-01	2021-07-16	3.69	4.43	—	4.3	0.006	0.84	0.0	0.05	15.77	0.01	2.061	23.38	0.29	7.4	92.6	0.0	-3.38	0.59	0.78	1.13	4.3	0.010	0.97	0.0	0.05	17.86	0.01	2.171	19.17	0.58	5.7	94.3	0.0	-0.35	0.79	0.58	0.75	0.95	6459	791	4	0	5	0	0	logfile

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