Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7D4G	30573	2022-11-29	2020-09-23	3.9	4.13	—	4.1	0.006	1.06	1.0	0.06	9.87	0.01	1.917	36.60	0.00	10.7	88.9	0.4	-3.84	0.56	0.52	1.34	4.1	0.004	0.88	0.0	0.04	15.55	0.00	2.183	19.60	1.16	11.5	88.3	0.2	-2.25	3.65	0.64	0.70	1.64	3925	502	3	0	0	0	0	logfile
✔	7VV0	32133	2022-11-29	2021-11-04	3.5	3.69	—	3.7	0.010	1.49	1.0	0.09	14.09	0.01	2.007	11.04	2.93	4.5	95.5	0.0	-3.44	0.65	0.80	1.76	3.7	0.003	0.61	0.0	0.04	15.15	0.00	2.257	7.66	0.84	4.2	95.8	0.0	2.03	1.25	0.64	0.80	1.65	2175	268	2	0	1	0	0	logfile
✔	7MDW	23782	2022-11-29	2021-04-06	3.58	2.25	3.45	1.5	0.002	0.54	0.0	0.04	12.63	0.00	2.293	8.46	0.00	6.5	93.5	0.0	-1.58	0.52	0.44	1.65	1.5	0.002	0.55	0.0	0.04	14.37	0.00	2.292	11.94	0.28	7.7	92.3	0.0	-2.34	0.98	0.54	0.46	1.66	3392	435	4	0	1	0	0	logfile
✔	6CU7	7618	2022-11-29	2018-03-23	3.5	3.63	—	4.3	0.007	0.99	0.0	0.07	9.61	0.00	2.346	4.58	2.38	15.5	84.5	0.0	-4.74	0.38	0.72	2.52	4.3	0.004	0.67	0.0	0.05	14.08	0.00	2.215	17.37	0.71	13.1	86.9	0.0	-4.59	1.76	0.38	0.72	1.68	4140	600	10	0	0	0	0	logfile
✔	7TPJ	26057	2022-11-29	2022-01-25	3.46	3.68	—	3.7	0.004	0.70	0.0	0.04	14.42	0.01	2.159	9.09	0.00	5.0	95.0	0.0	-0.01	0.57	0.69	1.76	3.7	0.003	0.62	0.0	0.04	16.04	0.00	2.254	9.09	0.60	4.8	95.2	0.0	0.77	1.43	0.58	0.72	1.71	4758	626	3	0	0	0	0	logfile
✔	7XH8	33191	2022-11-29	2022-04-07	2.99	3.75	3.32	3.6	0.014	1.81	0.0	0.09	13.61	0.03	2.472	0.80	0.88	3.5	95.5	1.0	-1.88	0.61	0.58	1.19	3.3	0.003	0.87	0.0	0.04	15.24	0.01	2.176	19.59	3.22	6.5	93.5	0.0	-0.91	2.01	0.67	0.74	1.72	3161	404	3	0	0	0	0	logfile
✔	7CAH	30331	2022-11-29	2020-06-08	3.9	4.13	—	4.0	0.005	0.92	0.0	0.05	13.68	0.01	2.137	18.97	0.00	19.9	79.8	0.3	-5.76	0.68	0.64	2.37	4.0	0.003	0.79	0.0	0.05	15.10	0.01	2.223	15.25	1.11	13.1	86.9	0.0	-3.62	0.49	0.71	0.64	1.73	2889	404	3	0	0	0	0	logfile
✔	6V5V	21054	2022-11-29	2019-12-04	3.8	4.01	—	3.9	0.003	0.51	0.0	0.04	13.58	0.00	2.212	6.41	0.00	4.6	95.4	0.0	-2.04	0.52	0.83	2.06	3.9	0.002	0.54	0.0	0.04	14.64	0.00	2.192	8.26	0.30	3.2	96.8	0.0	0.28	0.57	0.53	0.82	1.76	2979	369	1	1	0	0	0	logfile
✔	7RSQ	24677	2022-11-29	2021-08-11	3.8	4.03	3.73	4.1	0.008	0.80	0.0	0.05	12.74	0.00	2.360	4.01	2.88	3.0	97.0	0.0	-0.64	0.63	0.68	1.39	4.2	0.002	0.51	0.0	0.03	15.35	0.00	2.389	2.76	0.00	2.6	97.4	0.0	2.59	1.83	0.63	0.70	1.77	3970	246	1	0	0	0	1958	logfile
✔	7CYH	30500	2022-11-29	2020-09-03	3.9	4.13	—	4.1	0.011	1.18	0.0	0.06	9.76	0.01	2.087	28.64	0.87	9.8	89.7	0.5	-4.10	0.51	0.61	2.53	4.1	0.004	0.91	0.0	0.05	14.14	0.00	2.109	15.19	0.87	9.4	90.2	0.5	-2.09	1.05	0.57	0.75	1.78	3241	423	3	0	0	0	0	logfile
✔	8DAD	27270	2022-11-29	2022-06-13	3.85	4.05	3.91	4.0	0.004	0.81	1.0	0.05	16.30	0.01	2.238	16.32	0.63	5.0	95.0	0.0	-0.96	0.65	0.73	1.59	4.0	0.003	0.74	0.0	0.05	16.55	0.01	2.233	13.12	1.27	5.0	95.0	0.0	-0.92	0.46	0.65	0.74	1.80	3255	424	5	0	4	0	0	logfile
✔	7E23	30950	2022-11-29	2021-02-04	3.3	3.62	—	3.6	0.004	0.82	0.0	0.05	14.42	0.01	2.123	14.37	0.00	17.3	82.7	0.0	-3.70	0.70	0.77	2.78	3.6	0.003	0.75	0.0	0.05	16.18	0.01	2.170	13.23	0.30	15.8	84.2	0.0	-3.06	1.15	0.72	0.80	1.81	3133	403	4	0	1	0	0	logfile
✔	7RZQ	24774	2022-11-29	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.003	0.30	0.0	0.03	15.08	0.00	2.337	5.30	0.36	0.0	100.0	0.0	5.90	0.30	0.81	0.82	1.87	2421	322	6	0	0	0	0	logfile
✔	6QJQ	4566	2022-11-29	2019-01-24	3.7	3.99	2.14	4.1	0.021	1.17	0.0	0.11	13.36	0.01	2.499	5.58	0.00	4.0	94.0	2.0	-4.41	0.39	0.75	2.60	4.1	0.004	0.79	0.0	0.05	14.26	0.00	2.261	10.37	0.00	6.0	94.0	0.0	-2.92	1.26	0.38	0.75	1.88	1218	162	6	0	0	0	0	logfile
✔	6N3B	9350	2022-11-29	2018-11-14	3.8	3.75	—	4.0	0.010	1.21	0.0	0.05	11.40	0.01	2.253	20.70	0.00	13.7	86.3	0.0	-5.17	0.41	0.71	2.90	4.0	0.005	0.87	0.0	0.04	16.51	0.01	2.102	26.34	1.51	13.2	86.8	0.0	-5.29	1.48	0.42	0.71	1.88	2735	385	10	0	0	0	0	logfile
✔	7RZV	24779	2022-11-29	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.36	0.0	0.03	15.90	0.00	2.235	5.24	0.34	0.0	100.0	0.0	5.91	0.88	0.83	0.82	1.88	2562	339	6	0	0	0	0	logfile
✔	7W9F	32366	2022-11-29	2021-12-09	3.6	2.59	—	2.2	0.003	0.72	0.0	0.05	13.99	0.01	2.302	3.47	0.00	3.7	96.3	0.0	-3.66	0.73	0.72	1.95	3.2	0.003	0.66	0.0	0.04	16.05	0.00	2.090	11.05	0.37	4.4	95.6	0.0	-1.09	0.54	0.74	0.73	1.89	4856	625	3	0	0	0	0	logfile
✔	7SK0	25168	2022-11-29	2021-10-19	3.33	3.63	2.74	3.6	0.009	1.04	0.0	0.06	14.22	0.01	2.005	3.11	0.44	4.3	95.7	0.0	0.35	0.47	0.66	1.21	3.6	0.004	0.76	0.0	0.04	15.88	0.00	2.177	14.34	0.00	2.2	97.8	0.0	1.88	0.59	0.50	0.70	1.92	4168	514	4	0	7	0	0	logfile
✔	7WEF	32449	2022-11-29	2021-12-23	3.8	3.60	—	3.9	0.003	0.62	0.0	0.04	12.72	0.00	2.239	8.92	0.00	7.5	92.5	0.0	-1.27	0.53	0.76	2.61	3.8	0.003	0.64	0.0	0.04	14.76	0.00	2.178	8.92	0.28	7.3	92.7	0.0	-1.35	0.35	0.55	0.77	1.93	3328	432	3	0	0	0	0	logfile
✔	7Y14	33556	2022-11-29	2022-06-06	3.2	3.29	3.09	3.3	0.004	0.66	1.0	0.04	13.60	0.01	2.312	8.75	0.00	4.2	95.8	0.0	2.46	0.51	0.76	2.28	3.3	0.003	0.56	1.0	0.04	15.41	0.00	2.281	8.75	0.00	5.0	95.0	0.0	2.69	1.20	0.52	0.78	1.95	2145	265	1	0	4	0	0	logfile

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