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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7FG3 | 31577 | 2022-05-13 | 2021-07-25 | 3.9 | 3.62 | — | 4.0 | 0.006 | 1.13 | 0.0 | 0.06 | 14.47 | 0.01 | 1.929 | 37.34 | 0.00 | 18.5 | 80.8 | 0.7 | -4.60 | 0.22 | 0.47 | -0.27 | 4.0 | 0.009 | 0.98 | 0.0 | 0.05 | 16.79 | 0.01 | 2.094 | 24.09 | 0.30 | 15.7 | 83.7 | 0.6 | -3.71 | 0.78 | 0.23 | 0.45 | 0.29 | 9054 | 1166 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7o7R | 12754 | 2022-05-17 | 2021-04-13 | 3.9 | 4.51 | — | 4.3 | 0.013 | 1.32 | 8.0 | 0.07 | 16.26 | 0.01 | 1.912 | 21.03 | 1.07 | 18.3 | 81.4 | 0.3 | -5.78 | 0.83 | 0.75 | 0.13 | 4.3 | 0.007 | 1.05 | 1.0 | 0.05 | 17.18 | 0.01 | 1.930 | 21.53 | 0.74 | 10.2 | 89.7 | 0.1 | -3.28 | 0.86 | 0.83 | 0.75 | 0.30 | 40530 | 5126 | 16 | 0 | 40 | 0 | 0 | logfile |
✔ | 6Q97 | 4476 | 2022-05-25 | 2018-12-17 | 3.9 | 3.69 | — | 20.0 | 0.011 | 1.20 | 0.0 | 0.16 | 18.93 | 0.02 | 1.320 | 7.03 | 0.38 | 10.1 | 89.8 | 0.1 | -5.34 | 0.15 | 0.01 | 0.22 | 3.6 | 0.008 | 1.00 | 0.0 | 0.05 | 20.31 | 0.01 | 0.925 | 23.65 | 0.12 | 10.6 | 89.4 | 0.0 | -3.47 | 2.14 | 0.26 | 0.21 | 0.31 | 156609 | 6124 | 72 | 5051 | 441 | 2 | 0 | logfile |
✔ | 6TQM | 10555 | 2022-05-17 | 2019-12-16 | 3.8 | 4.34 | 3.78 | 20.0 | 0.014 | 0.98 | 0.0 | 0.12 | 15.01 | 0.01 | 2.083 | 4.06 | 1.40 | 14.5 | 85.5 | 0.0 | -5.95 | 0.30 | 0.07 | 0.30 | 3.8 | 0.011 | 1.11 | 1.0 | 0.04 | 15.94 | 0.00 | 1.851 | 15.53 | 0.43 | 10.5 | 89.5 | 0.0 | -3.67 | 1.07 | 0.36 | 0.21 | 0.31 | 39616 | 2578 | 6 | 0 | 4 | 0 | 19804 | logfile |
✔ | 6QZF | 4685 | 2022-05-14 | 2019-03-11 | 3.8 | 4.25 | — | 4.1 | 0.010 | 1.06 | 0.0 | 0.06 | 10.18 | 0.01 | 2.143 | 10.35 | 0.16 | 9.8 | 90.1 | 0.0 | -4.87 | 0.67 | 0.72 | 0.54 | 4.1 | 0.005 | 0.95 | 0.0 | 0.05 | 17.11 | 0.01 | 2.016 | 28.19 | 1.07 | 8.7 | 91.3 | 0.0 | -1.90 | 1.73 | 0.66 | 0.72 | 0.32 | 71628 | 8880 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QPG | 14120 | 2022-05-12 | 2022-01-04 | 3.9 | 4.08 | — | 2.8 | 0.002 | 0.54 | 0.0 | 0.04 | 10.05 | 0.00 | 2.093 | 7.04 | 0.00 | 2.7 | 97.3 | 0.0 | 0.34 | 0.78 | 0.58 | 0.22 | 2.4 | 0.006 | 0.80 | 0.0 | 0.04 | 13.15 | 0.00 | 1.840 | 14.65 | 0.12 | 3.1 | 96.9 | 0.0 | 1.00 | 0.83 | 0.87 | 0.74 | 0.32 | 57164 | 7156 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UMM | 20820 | 2022-05-15 | 2019-10-09 | 3.7 | 6.74 | 4.15 | 4.0 | 0.006 | 0.79 | 0.0 | 0.04 | 13.23 | 0.00 | 2.203 | 12.00 | 0.17 | 4.8 | 95.2 | 0.0 | -2.07 | 0.55 | 0.56 | -0.10 | 4.1 | 0.004 | 0.92 | 0.0 | 0.05 | 14.46 | 0.00 | 2.056 | 24.51 | 0.70 | 4.4 | 95.6 | 0.0 | 0.76 | 1.20 | 0.62 | 0.83 | 0.32 | 23658 | 3184 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RYE | 24735 | 2022-05-14 | 2021-08-25 | 3.9 | 4.10 | — | 4.0 | 0.003 | 0.65 | 0.0 | 0.04 | 14.57 | 0.00 | 2.090 | 14.13 | 0.00 | 3.7 | 96.3 | 0.0 | 1.07 | 0.76 | 0.69 | -0.18 | 4.0 | 0.004 | 0.77 | 0.0 | 0.04 | 17.72 | 0.01 | 2.110 | 15.54 | 0.56 | 4.1 | 95.9 | 0.0 | 1.33 | 1.08 | 0.81 | 0.79 | 0.33 | 19708 | 2535 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JCE | 6550 | 2022-05-24 | 2015-12-01 | 3.2 | 4.36 | — | 14.0 | 0.008 | 0.88 | 0.0 | 0.04 | 14.83 | 0.00 | 1.106 | 32.70 | 0.47 | 10.4 | 84.8 | 4.8 | -2.93 | 0.33 | 0.04 | 0.16 | 3.2 | 0.007 | 1.06 | 3.0 | 0.05 | 17.20 | 0.01 | 1.577 | 41.40 | 0.19 | 11.5 | 87.2 | 1.3 | -3.17 | 1.17 | 0.63 | 0.30 | 0.33 | 154017 | 6546 | 59 | 4798 | 2 | 0 | 0 | logfile |
✔ | 5LKH | 4068 | 2022-05-17 | 2016-07-22 | 3.46 | 5.27 | — | 11.0 | 0.018 | 2.37 | 65.0 | 0.12 | 12.66 | 0.02 | 2.255 | 87.25 | 1.96 | 3.4 | 95.2 | 1.4 | -0.27 | 0.38 | 0.17 | -0.03 | 8.8 | 0.004 | 0.83 | 0.0 | 0.04 | 15.55 | 0.01 | 2.085 | 26.64 | 0.22 | 6.6 | 93.4 | 0.0 | -0.75 | 2.06 | 0.50 | 0.56 | 0.33 | 37345 | 4740 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 5KPW | 8281 | 2022-05-24 | 2016-07-05 | 3.9 | 5.27 | 4.08 | 3.8 | 0.007 | 1.11 | 5.0 | 0.09 | 13.85 | 0.01 | 2.191 | 24.19 | 0.79 | 12.9 | 81.4 | 5.7 | -4.53 | 0.90 | 0.77 | 0.51 | 3.9 | 0.005 | 0.74 | 0.0 | 0.04 | 16.08 | 0.01 | 1.992 | 32.40 | 0.66 | 11.3 | 87.8 | 0.8 | -2.27 | 1.78 | 0.95 | 0.90 | 0.34 | 154603 | 6623 | 59 | 4812 | 0 | 0 | 0 | logfile |
✔ | 6TA3 | 10421 | 2022-05-13 | 2019-10-29 | 3.8 | 4.18 | — | 3.9 | 0.024 | 2.45 | 4.0 | 0.08 | 18.76 | 0.01 | 0.317 | 210.77 | 16.02 | 0.8 | 99.2 | 0.0 | 1.86 | 0.67 | 0.49 | 0.26 | 4.0 | 0.008 | 1.20 | 1.0 | 0.05 | 17.85 | 0.01 | 1.307 | 34.27 | 0.00 | 3.2 | 96.8 | 0.0 | -0.17 | 2.41 | 0.77 | 0.73 | 0.34 | 9491 | 1201 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 5UYQ | 8620 | 2022-05-24 | 2017-02-24 | 3.8 | 4.28 | 4.16 | 3.7 | 0.007 | 1.05 | 0.0 | 0.09 | 14.22 | 0.01 | 1.314 | 14.39 | 1.29 | 13.9 | 83.4 | 2.7 | -5.24 | 0.86 | 0.79 | 0.45 | 3.5 | 0.006 | 0.83 | 0.0 | 0.04 | 17.23 | 0.01 | 1.067 | 34.38 | 0.95 | 15.2 | 84.5 | 0.2 | -3.26 | 1.11 | 0.87 | 0.82 | 0.35 | 153759 | 6476 | 63 | 4810 | 2 | 0 | 0 | logfile |
✔ | 6Z5U | 11082 | 2022-05-14 | 2020-05-27 | 3.9 | 4.52 | — | 38.0 | 0.021 | 1.88 | 10.0 | 0.11 | 11.93 | 0.01 | 0.901 | 4.94 | 1.69 | 2.0 | 97.7 | 0.3 | -0.47 | 0.18 | 0.03 | -0.06 | 4.1 | 0.008 | 0.89 | 1.0 | 0.04 | 14.43 | 0.01 | 2.092 | 11.99 | 0.15 | 4.7 | 95.2 | 0.0 | -0.06 | 1.51 | 0.27 | 0.13 | 0.35 | 17880 | 2334 | 14 | 0 | 4 | 0 | 0 | logfile |
✔ | 6XQB | 22288 | 2022-05-14 | 2020-07-09 | 3.4 | 4.22 | — | 3.9 | 0.012 | 1.28 | 0.0 | 0.06 | 12.24 | 0.01 | 2.069 | 14.03 | 0.23 | 15.2 | 84.8 | 0.0 | -5.15 | 0.75 | 0.57 | 0.58 | 3.9 | 0.003 | 0.69 | 0.0 | 0.04 | 14.31 | 0.00 | 1.950 | 21.99 | 0.00 | 9.2 | 90.8 | 0.0 | -2.55 | 1.31 | 0.76 | 0.60 | 0.36 | 16323 | 1008 | 7 | 15 | 3 | 0 | 7987 | logfile |
✔ | 6Y7C | 10713 | 2022-05-15 | 2020-02-28 | 3.8 | 5.42 | 3.84 | 2.8 | 0.015 | 1.44 | 1.0 | 0.06 | 18.61 | 0.01 | 0.193 | 10.36 | 1.00 | 14.3 | 85.4 | 0.3 | -5.44 | 0.89 | 0.71 | 0.41 | 2.6 | 0.013 | 0.89 | 0.0 | 0.04 | 18.71 | 0.01 | 1.942 | 32.34 | 0.30 | 14.2 | 85.6 | 0.1 | -3.61 | 2.57 | 0.92 | 0.79 | 0.36 | 79690 | 5381 | 34 | 1735 | 0 | 0 | 0 | logfile |
✔ | 6NQB | 0482 | 2022-05-17 | 2019-01-20 | 3.8 | 4.35 | — | 4.0 | 0.006 | 0.98 | 0.0 | 0.05 | 17.60 | 0.01 | 2.216 | 8.05 | 0.41 | 13.6 | 86.3 | 0.1 | -5.36 | 0.86 | 0.79 | 0.88 | 4.0 | 0.009 | 0.94 | 1.0 | 0.04 | 18.12 | 0.01 | 1.627 | 28.50 | 0.41 | 15.1 | 84.8 | 0.1 | -3.39 | 0.72 | 0.87 | 0.79 | 0.36 | 42570 | 1752 | 17 | 1341 | 1 | 0 | 0 | logfile |
✔ | 6RAX | 4786 | 2022-05-17 | 2019-04-08 | 3.99 | 4.07 | 3.97 | 4.1 | 0.011 | 1.46 | 27.0 | 0.13 | 18.03 | 0.01 | 1.308 | 24.00 | 6.70 | 19.2 | 80.3 | 0.5 | -5.61 | 0.55 | 0.58 | 0.25 | 4.0 | 0.006 | 0.87 | 0.0 | 0.04 | 18.40 | 0.01 | 2.102 | 15.60 | 0.72 | 11.8 | 88.2 | 0.0 | -3.06 | 1.49 | 0.57 | 0.55 | 0.36 | 40970 | 5062 | 19 | 29 | 6 | 0 | 0 | logfile |
✔ | 7VUJ | 32130 | 2022-05-13 | 2021-11-02 | 3.8 | 2.78 | — | 2.1 | 0.004 | 0.73 | 0.0 | 0.04 | 13.44 | 0.01 | 1.960 | 19.65 | 0.00 | 6.0 | 93.9 | 0.1 | -0.35 | 0.64 | 0.63 | 0.83 | 3.1 | 0.004 | 0.79 | 0.0 | 0.05 | 16.46 | 0.01 | 2.039 | 21.72 | 0.67 | 6.8 | 93.2 | 0.1 | -0.81 | 0.63 | 0.65 | 0.64 | 0.36 | 8286 | 1034 | 7 | 1 | 2 | 0 | 0 | logfile |
✔ | 6o9J | 0661 | 2022-05-18 | 2019-03-14 | 3.9 | 3.92 | — | 3.9 | 0.006 | 1.25 | 25.0 | 0.10 | 17.39 | 0.01 | 0.154 | 55.38 | 23.17 | 26.6 | 58.7 | 14.7 | -7.10 | 0.74 | 0.66 | 0.16 | 3.9 | 0.011 | 1.09 | 10.0 | 0.05 | 17.02 | 0.01 | 1.293 | 32.80 | 0.58 | 23.4 | 73.7 | 3.0 | -4.89 | 1.14 | 0.79 | 0.75 | 0.36 | 142682 | 5731 | 53 | 4564 | 0 | 0 | 0 | logfile |