Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NZM	12665	2023-07-05	2021-03-24	3.96	6.56	4.22	4.2	0.007	1.12	0.0	0.06	13.94	0.01	1.774	11.10	0.00	3.8	96.2	0.0	-1.56	0.77	0.51	-0.04	4.3	0.003	0.74	0.0	0.04	15.04	0.00	2.061	18.47	0.21	2.9	97.1	0.0	0.28	1.50	0.94	0.84	0.28	9109	1157	8	0	4	0	0	logfile
✔	6RED	4850	2023-07-15	2019-04-12	3.0	3.22	3.14	27.0	0.012	1.04	0.0	0.06	14.48	0.01	2.140	5.83	0.31	4.7	95.2	0.1	-3.86	0.16	0.02	0.19	27.0	0.004	0.80	0.0	0.05	15.95	0.00	1.867	19.50	2.41	5.4	94.5	0.1	-0.98	1.03	0.25	0.16	0.28	33899	4503	25	0	10	0	0	logfile
✔	6RAX	4786	2023-07-18	2019-04-08	3.99	4.07	3.97	4.1	0.011	1.46	27.0	0.13	18.03	0.01	1.308	23.93	6.70	19.2	80.3	0.5	-5.61	0.55	0.58	0.25	4.0	0.003	0.82	0.0	0.04	18.22	0.00	2.143	13.30	0.36	10.1	89.8	0.0	-2.87	1.49	0.56	0.53	0.28	40970	5062	19	29	6	0	0	logfile
✔	7KNi	22950	2023-07-17	2020-11-04	3.91	4.86	4.14	3.9	0.004	0.64	0.0	0.05	14.42	0.01	2.045	4.23	0.07	4.4	95.6	0.0	-1.75	0.77	0.56	0.26	4.0	0.003	0.66	0.0	0.05	16.07	0.00	2.090	18.08	0.31	5.3	94.7	0.0	-1.03	1.46	0.84	0.74	0.28	39574	4878	18	0	68	0	0	logfile
✔	7RTV	24690	2023-07-03	2021-08-15	3.96	4.06	—	4.1	0.004	0.76	0.0	0.05	14.21	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.004	0.91	0.0	0.04	16.58	0.00	2.168	18.02	0.32	3.3	96.7	0.0	2.73	1.76	0.41	0.64	0.28	2881	366	3	0	6	0	0	logfile
✔	7oPE	13017	2023-07-16	2021-05-31	3.2	5.30	3.21	5.0	0.011	1.04	2.0	0.06	15.48	0.01	1.028	4.81	0.23	8.2	91.6	0.2	-3.62	0.89	0.72	-0.03	5.0	0.004	0.76	0.0	0.04	17.44	0.01	2.017	29.39	0.93	7.9	92.0	0.1	-1.69	1.82	0.93	0.87	0.28	93862	3818	33	2996	0	0	0	logfile
✔	6AHR	9626	2023-07-13	2018-08-20	3.92	4.05	—	3.9	0.004	0.96	0.0	0.05	12.84	0.01	1.742	9.87	0.13	10.2	89.6	0.3	-4.23	0.71	0.61	0.54	3.9	0.005	0.87	0.0	0.04	16.28	0.01	2.063	22.59	0.79	12.1	87.8	0.1	-2.17	2.79	0.78	0.76	0.28	27851	2595	13	341	1	0	0	logfile
✔	7AS9	11890	2023-07-16	2020-10-27	3.5	4.52	3.51	4.2	0.007	0.98	0.0	0.05	17.12	0.01	1.976	8.25	0.07	13.0	86.6	0.4	-4.86	0.92	0.83	0.18	4.2	0.006	0.86	1.0	0.04	18.38	0.01	2.021	38.30	0.99	12.9	87.0	0.1	-3.02	0.73	0.92	0.84	0.28	93137	3720	32	2999	0	0	0	logfile
✔	7WTA	32773	2023-07-10	2022-02-04	3.9	6.12	—	3.5	0.008	0.82	0.0	0.04	13.23	0.00	2.171	19.58	0.00	8.2	91.8	0.0	-0.51	0.89	0.81	0.46	3.5	0.004	0.78	0.0	0.04	14.73	0.00	2.043	25.61	0.27	9.2	90.7	0.1	-0.75	0.46	0.90	0.82	0.29	21080	2736	8	0	4	0	0	logfile
✔	8FCQ	28990	2023-07-17	2022-12-01	3.93	4.35	4.09	4.2	0.011	0.85	0.0	0.06	12.29	0.00	2.387	1.15	0.03	1.7	98.2	0.1	0.31	0.69	0.55	0.57	4.2	0.003	0.85	0.0	0.05	15.64	0.00	2.071	16.80	0.28	2.6	97.4	0.0	0.62	1.18	0.81	0.79	0.30	36904	4667	13	0	12	0	0	logfile
✔	7o7R	12754	2023-07-18	2021-04-13	3.9	4.51	—	4.3	0.013	1.33	8.0	0.07	16.35	0.01	1.912	20.97	1.07	18.3	81.4	0.3	-5.78	0.83	0.75	0.13	4.3	0.005	1.01	0.0	0.05	17.36	0.01	1.920	31.74	0.67	12.7	87.2	0.1	-3.70	0.87	0.84	0.77	0.30	40530	5126	16	0	40	0	0	logfile
✔	6XWQ	10635	2023-07-05	2020-01-24	3.41	4.27	—	4.0	0.003	0.61	0.0	0.04	13.42	0.00	2.171	10.53	0.00	3.5	96.2	0.2	-2.80	0.73	0.80	0.22	4.0	0.003	0.80	0.0	0.04	15.44	0.00	2.167	14.27	0.30	3.8	96.2	0.0	1.16	1.16	0.72	0.84	0.30	9572	1281	6	0	0	0	0	logfile
✔	5U4i	8505	2023-07-25	2016-12-04	3.5	3.09	3.83	3.7	0.007	1.17	41.0	0.10	18.54	0.02	1.386	8.56	8.19	6.4	92.7	0.8	-1.32	0.60	0.74	0.22	3.0	0.005	0.80	0.0	0.04	18.66	0.01	1.670	32.60	1.29	7.3	92.6	0.1	-1.91	1.50	0.63	0.74	0.31	149495	6159	61	4715	125	0	0	logfile
✔	7UNK	26625	2023-07-07	2022-04-11	3.45	3.69	3.50	3.6	0.003	0.66	0.0	0.04	15.44	0.01	2.169	7.74	0.75	3.0	97.0	0.0	1.09	0.72	0.83	0.68	3.6	0.003	0.63	0.0	0.04	16.91	0.00	2.175	8.87	0.42	2.9	97.1	0.0	1.47	0.49	0.76	0.88	0.31	10992	1401	4	0	0	0	0	logfile
✔	7RYE	24735	2023-07-09	2021-08-25	3.9	4.10	—	4.0	0.003	0.65	0.0	0.04	14.57	0.00	2.090	14.13	0.00	3.7	96.3	0.0	1.07	0.76	0.69	-0.18	4.0	0.004	0.75	0.0	0.04	17.66	0.00	2.049	16.16	0.42	4.3	95.7	0.0	1.29	1.09	0.81	0.79	0.32	19708	2535	24	0	0	0	0	logfile
✔	7QPG	14120	2023-07-04	2022-01-04	3.9	4.08	—	2.8	0.002	0.54	0.0	0.04	10.05	0.00	2.093	6.89	0.00	2.7	97.3	0.0	0.34	0.78	0.58	0.22	2.3	0.003	0.67	0.0	0.04	13.10	0.00	2.137	11.18	0.11	3.0	97.0	0.0	1.12	0.84	0.88	0.76	0.33	57164	7156	6	0	0	0	0	logfile
✔	6MDo	9102	2023-07-19	2018-09-04	3.9	5.46	—	4.2	0.015	1.44	0.0	0.12	13.30	0.01	2.012	6.72	0.16	0.3	99.6	0.0	-3.28	0.79	0.68	0.38	4.2	0.003	0.66	0.0	0.08	13.80	0.00	1.783	15.25	0.21	5.9	94.1	0.0	-0.92	1.53	0.87	0.84	0.34	45373	2843	13	0	11	0	22858	logfile
✔	5L4K	4002	2023-07-13	2016-05-25	3.9	4.00	—	4.2	0.007	0.85	3.0	0.05	16.12	0.01	1.808	5.03	3.82	11.8	85.0	3.2	-6.15	0.34	0.64	0.39	4.0	0.004	0.79	0.0	0.04	17.43	0.01	1.906	18.52	0.60	9.2	90.4	0.5	-1.87	1.81	0.37	0.70	0.35	79649	5000	12	0	0	0	39990	logfile
✔	6Y7C	10713	2023-07-13	2020-02-28	3.8	5.42	3.84	2.8	0.015	1.44	1.0	0.06	18.67	0.02	0.193	10.34	1.00	14.3	85.4	0.3	-5.44	0.89	0.71	0.41	2.6	0.013	0.93	0.0	0.04	18.90	0.01	1.977	36.16	0.35	15.8	84.1	0.1	-3.77	2.58	0.92	0.79	0.35	79690	5381	34	1735	0	0	0	logfile
✔	7FG3	31577	2023-07-05	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.29	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.004	0.92	0.0	0.05	16.64	0.01	2.088	24.71	0.10	15.3	84.1	0.5	-3.68	0.78	0.23	0.45	0.35	9054	1166	2	0	0	0	0	logfile

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