Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8i6V	35208	2023-08-13	2023-01-29	3.06	2.71	2.98	2.9	0.004	0.57	0.0	0.04	15.26	0.00	2.114	5.15	0.28	3.2	96.6	0.2	2.38	0.61	0.81	2.61	3.0	0.003	0.54	0.0	0.04	16.37	0.00	2.116	4.99	0.21	2.9	97.1	0.0	2.27	0.34	0.62	0.84	2.73	13172	1594	10	0	6	4	0	logfile
✔	7T11	25587	2023-08-10	2021-11-30	2.7	2.94	—	3.0	0.004	0.61	0.0	0.04	10.76	0.00	2.107	3.46	0.27	2.4	97.6	0.0	0.96	0.60	0.74	3.90	3.0	0.005	0.68	0.0	0.04	13.72	0.00	2.232	3.33	0.93	3.5	96.5	0.0	0.85	0.43	0.62	0.80	3.68	8151	1132	6	0	2	0	0	logfile
✔	7QPD	14119	2023-08-12	2022-01-03	3.73	3.98	—	3.9	0.005	0.81	0.0	0.05	10.90	0.00	2.225	9.51	0.09	4.9	95.0	0.1	-1.20	0.80	0.76	2.23	3.9	0.003	0.69	0.0	0.04	14.38	0.00	2.199	11.66	0.57	4.5	95.4	0.1	-0.46	2.23	0.82	0.78	1.82	11521	1544	7	0	10	0	0	logfile
✔	7MHZ	23837	2023-08-09	2021-04-16	3.2	3.82	—	3.7	0.005	0.77	0.0	1.63	19.46	0.00	2.210	7.55	0.00	3.4	96.6	0.0	1.45	0.61	0.79	2.94	3.7	0.003	2.46	0.0	0.26	16.38	0.00	2.184	6.70	0.17	2.7	97.3	0.0	1.74	0.33	0.61	0.81	2.69	6189	723	6	0	15	0	0	logfile
✔	7AK5	11810	2023-08-13	2020-09-29	3.17	2.97	3.17	3.1	0.005	0.73	0.0	1.04	15.21	0.00	1.865	7.38	0.01	5.9	94.0	0.0	-3.68	0.66	0.82	3.16	3.1	0.008	1.59	0.0	0.31	16.55	0.00	2.139	8.24	0.17	3.5	96.5	0.0	0.51	1.48	0.68	0.86	2.52	65895	8069	64	0	28	0	0	logfile
✔	8AB7	15313	2023-08-22	2022-07-04	3.3	2.57	3.15	3.1	0.013	2.00	78.0	0.12	18.36	0.01	1.874	7.05	5.54	2.9	97.0	0.1	-1.88	0.61	0.84	3.31	2.9	0.006	0.69	0.0	0.05	17.70	0.00	2.020	11.05	0.52	2.3	97.6	0.1	0.81	1.37	0.65	0.85	2.81	33654	4124	34	0	36	0	0	logfile
✔	7UZ7	26881	2023-08-21	2022-05-08	2.9	3.46	3.07	3.4	0.005	0.61	0.0	0.04	12.96	0.01	2.121	9.12	0.00	3.5	96.5	0.0	0.04	0.71	0.78	2.76	3.4	0.003	0.61	0.0	0.04	14.92	0.00	2.185	9.75	1.48	3.6	96.4	0.0	0.00	0.36	0.69	0.79	2.47	30552	3861	15	0	45	0	0	logfile
✔	7ZGR	14712	2023-08-13	2022-04-04	2.6	3.01	2.54	2.8	0.003	0.56	0.0	0.05	14.68	0.00	2.181	8.43	1.24	5.7	94.1	0.2	-0.53	0.82	0.92	4.71	2.8	0.002	0.56	0.0	0.05	15.46	0.00	2.192	8.78	2.36	5.9	93.9	0.2	-0.75	0.23	0.82	0.92	4.54	14505	1819	7	4	2	0	0	logfile
✔	8ADi	15363	2023-08-17	2022-07-08	3.4	3.67	3.39	3.7	0.003	0.52	0.0	0.04	14.25	0.01	1.491	4.93	0.08	4.4	95.6	0.0	-0.36	0.69	0.83	3.58	3.7	0.003	0.46	0.0	0.04	14.95	0.00	1.958	5.31	0.40	5.3	94.7	0.0	-0.07	0.24	0.66	0.85	3.10	23141	1505	6	0	0	0	11353	logfile
✔	7WTJ	32788	2023-08-09	2022-02-04	4.2	4.07	—	4.1	0.006	0.85	3.0	0.05	13.86	0.01	2.242	10.88	0.58	8.9	91.1	0.0	-2.21	0.55	0.79	—	4.0	0.005	0.75	0.0	0.05	14.22	0.00	2.204	11.35	0.00	14.6	85.4	0.0	-2.22	0.37	0.55	0.81	—	3261	424	3	0	0	0	0	logfile
✔	7D4Q	30576	2023-08-17	2020-09-24	2.74	2.99	2.80	3.0	0.009	0.78	0.0	0.04	12.13	0.00	2.254	6.34	0.67	1.4	98.6	0.0	2.70	0.47	0.71	3.84	3.0	0.004	0.53	0.0	0.04	15.85	0.00	2.191	6.74	0.71	1.9	98.1	0.0	2.40	0.48	0.69	0.88	4.46	22388	2672	8	0	24	0	0	logfile
✔	5WQ8	6676	2023-08-10	2016-11-23	3.26	3.41	—	3.3	0.009	1.18	0.0	0.06	10.83	0.01	1.654	27.56	0.24	4.8	95.0	0.2	-2.76	0.72	0.83	2.86	3.3	0.003	0.65	0.0	0.05	14.43	0.00	2.173	10.95	0.29	3.2	96.6	0.2	0.01	1.47	0.71	0.83	1.72	56460	7440	15	0	0	0	0	logfile
✔	7WKA	32564	2023-08-21	2022-01-08	3.64	3.27	—	3.6	0.005	0.79	1.0	0.05	8.14	0.01	2.353	3.18	0.23	3.7	96.1	0.1	-2.58	0.70	0.64	0.56	3.7	0.005	0.81	0.0	0.05	13.97	0.00	2.073	18.03	0.91	4.6	95.4	0.1	-0.79	1.63	0.77	0.74	1.25	31353	4017	7	0	0	0	0	logfile
✔	7YQZ	34040	2023-08-19	2022-08-08	3.84	4.12	3.90	3.9	0.005	0.80	2.0	0.05	14.14	0.01	1.625	6.53	0.07	6.8	92.9	0.3	-2.84	0.80	0.80	1.56	3.9	0.003	0.62	0.0	0.04	15.46	0.00	2.135	10.60	0.07	7.0	93.0	0.0	-1.61	1.16	0.80	0.81	1.34	28266	3531	12	0	53	0	0	logfile
✔	6VoH	21264	2023-08-24	2020-01-30	4.16	3.96	—	4.0	0.005	0.99	0.0	0.05	15.53	0.01	2.172	14.16	0.49	7.7	92.0	0.3	-3.96	0.70	0.74	—	3.9	0.003	0.78	0.0	0.04	14.97	0.00	2.104	18.24	0.00	7.9	91.9	0.2	-1.36	0.69	0.69	0.72	—	39159	5193	31	0	5	0	0	logfile
✔	8AC1	15330	2023-08-18	2022-07-05	4.06	4.42	4.15	4.0	0.005	0.65	0.0	0.04	14.81	0.00	1.927	19.97	0.00	8.5	91.5	0.0	-1.14	0.83	0.81	—	4.0	0.003	0.62	0.0	0.04	14.79	0.00	1.943	15.92	0.00	7.2	92.8	0.0	-0.84	0.32	0.83	0.81	—	25188	3141	9	32	3	0	0	logfile
✔	7WSH	32758	2023-08-12	2022-01-29	2.89	3.01	—	3.0	0.003	0.45	0.0	0.04	9.90	0.00	2.140	5.01	0.72	1.9	98.1	0.0	-0.03	0.69	0.82	4.30	3.0	0.003	0.59	0.0	0.04	15.50	0.00	2.123	9.77	2.01	1.8	98.2	0.0	1.20	0.84	0.72	0.85	3.53	6457	793	4	0	2	0	0	logfile
✔	7E27	30953	2023-08-12	2021-02-04	2.29	2.55	—	2.6	0.007	0.91	0.0	0.06	14.59	0.01	2.322	2.20	0.42	1.4	98.6	0.0	-2.60	0.63	0.86	4.69	2.5	0.004	0.63	0.0	0.05	15.83	0.00	2.192	3.34	2.03	1.1	98.9	0.0	1.34	0.40	0.64	0.87	4.68	11475	1435	15	0	5	90	0	logfile
✔	5o31	3731	2023-08-27	2017-05-23	4.13	4.19	—	4.1	0.008	1.37	11.0	1.11	13.96	0.01	2.512	2.82	2.22	9.3	88.3	2.4	-4.78	0.70	0.73	—	4.1	0.009	1.83	0.0	0.33	12.96	0.00	1.968	13.88	0.03	9.7	90.0	0.4	-1.69	2.19	0.71	0.76	—	52703	7006	52	0	816	0	0	logfile
✔	6XJV	22215	2023-08-22	2020-06-24	4.17	4.32	—	4.1	0.006	1.01	0.0	0.06	10.81	0.01	2.238	4.38	0.27	5.0	94.9	0.2	-3.26	0.71	0.75	—	4.1	0.003	0.71	0.0	0.04	13.04	0.00	2.167	14.41	0.00	4.9	95.1	0.1	0.05	1.32	0.73	0.79	—	29921	3649	20	0	0	0	0	logfile

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