Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PLX	20379	2023-02-21	2019-07-01	2.9	3.61	—	3.5	0.010	1.11	0.0	0.06	10.08	0.01	2.316	6.04	0.00	3.2	96.8	0.0	-5.10	0.56	0.83	4.25	3.5	0.003	0.67	0.0	0.04	15.17	0.00	2.169	9.09	2.26	3.2	96.8	0.0	-1.27	0.68	0.53	0.81	3.48	14240	1730	15	0	20	0	0	logfile
✔	7S89	24891	2023-02-23	2021-09-17	2.54	2.40	—	2.4	0.012	1.28	4.0	0.06	16.92	0.01	2.222	5.87	1.74	2.5	97.5	0.0	-3.47	0.79	0.82	4.59	2.4	0.003	0.68	0.0	0.04	17.50	0.00	2.226	10.28	1.60	3.5	96.5	0.0	1.69	0.63	0.79	0.86	3.95	20425	2376	12	0	45	88	0	logfile
✔	5K7L	8215	2023-02-25	2016-05-26	3.78	6.37	—	3.6	0.008	1.37	20.0	0.07	13.26	0.00	2.315	9.11	0.35	7.3	92.6	0.1	-0.20	0.75	0.79	1.04	3.6	0.004	0.71	0.0	0.04	13.74	0.00	2.157	12.41	0.26	4.1	95.9	0.0	1.42	2.35	0.75	0.81	0.73	24696	3372	12	0	8	0	0	logfile
✔	6SSX	10307	2023-02-17	2019-09-09	2.98	3.11	—	3.1	0.008	0.94	0.0	0.07	14.94	0.00	2.424	6.14	4.26	12.6	87.4	0.0	-4.73	0.65	0.82	4.81	3.0	0.008	0.80	0.0	0.06	16.95	0.00	2.222	13.38	4.47	13.2	86.8	0.0	-5.14	0.77	0.65	0.86	4.75	4900	730	10	0	0	0	0	logfile
✔	7EoR	31228	2023-02-24	2021-04-22	4.0	4.40	—	4.1	0.002	0.42	0.0	0.04	9.09	0.00	2.227	7.42	1.64	3.2	96.8	0.0	0.66	0.86	0.76	—	4.1	0.004	0.76	0.0	0.05	13.42	0.00	2.112	16.82	0.19	6.3	93.7	0.0	-0.91	2.23	0.88	0.82	—	24204	3030	8	0	16	0	0	logfile
✔	7TMP	25998	2023-02-28	2022-01-19	3.3	3.47	—	3.4	0.004	0.54	0.0	0.04	12.38	0.00	1.989	8.91	0.38	3.5	96.5	0.1	1.23	0.78	0.84	3.41	3.4	0.003	0.54	0.0	0.04	14.07	0.00	1.940	8.56	0.29	2.9	97.1	0.0	1.21	0.28	0.79	0.86	2.88	32105	4805	16	0	2	0	0	logfile
✔	6VP9	21307	2023-02-18	2020-02-02	3.46	3.63	—	3.6	0.007	0.83	0.0	0.04	15.37	0.01	2.032	21.68	0.00	9.4	90.6	0.0	-3.63	0.77	0.86	1.78	3.6	0.003	0.62	0.0	0.04	16.83	0.00	2.234	8.46	0.11	6.0	94.0	0.0	-0.28	0.45	0.76	0.86	1.22	8610	1077	4	0	1	0	0	logfile
✔	6KS8	0760	2023-02-23	2019-08-23	4.69	4.76	—	4.6	0.001	0.39	0.0	0.04	7.12	0.00	2.228	5.86	0.01	4.4	95.5	0.0	-3.61	0.77	0.67	—	4.6	0.003	0.73	0.0	0.05	11.70	0.00	2.011	17.70	0.01	3.4	96.6	0.0	-0.29	1.89	0.81	0.73	—	61943	8120	16	0	0	0	0	logfile
✔	6WJV	21701	2023-02-23	2020-04-14	3.5	3.60	—	3.5	0.009	1.66	1.0	0.08	15.51	0.01	1.466	5.97	0.05	7.2	92.8	0.0	-5.50	0.75	0.66	0.87	3.5	0.004	0.77	0.0	0.05	16.78	0.00	2.069	15.31	0.34	9.4	90.6	0.0	-1.98	0.75	0.77	0.71	1.30	19593	2567	5	0	1	0	0	logfile
✔	6SST	10305	2023-02-17	2019-09-09	3.4	3.46	—	3.4	0.009	0.94	0.0	0.07	16.79	0.00	2.430	5.73	2.13	10.1	89.9	0.0	-4.47	0.56	0.80	6.33	3.4	0.008	0.76	0.0	0.06	14.95	0.00	2.266	10.97	0.43	17.2	82.8	0.0	-4.97	0.49	0.59	0.84	4.82	4900	730	10	0	0	0	0	logfile
✔	8ATF	15647	2023-02-21	2022-08-23	3.45	3.54	3.42	3.5	0.013	1.99	4.0	0.11	24.98	0.03	2.090	4.15	1.81	3.1	96.2	0.7	-2.09	0.71	0.80	2.97	3.5	0.003	0.58	0.0	0.03	25.88	0.00	2.235	6.93	0.00	1.8	98.2	0.0	1.86	2.25	0.78	0.85	1.65	15719	1219	13	286	1	0	0	logfile
✔	6N3A	9349	2023-02-17	2018-11-14	3.3	3.44	—	3.6	0.008	1.14	0.0	0.05	14.53	0.01	2.469	17.25	0.00	8.9	91.1	0.0	-5.23	0.49	0.76	3.75	3.7	0.005	0.90	0.0	0.04	18.94	0.00	2.214	16.77	0.68	10.4	89.6	0.0	-5.19	1.68	0.52	0.79	2.83	4310	600	20	0	0	0	0	logfile
✔	7D45	30570	2023-02-26	2020-09-22	3.8	3.90	—	3.9	0.009	0.92	0.0	0.05	15.23	0.00	2.082	19.88	0.35	16.6	83.1	0.2	-4.81	0.79	0.80	1.51	3.8	0.004	0.69	0.0	0.05	16.54	0.00	2.083	14.85	0.39	8.2	91.7	0.1	-1.74	1.57	0.78	0.78	1.20	27529	3659	11	0	0	0	0	logfile
✔	7TMo	25997	2023-02-28	2022-01-19	3.3	3.50	—	3.4	0.003	0.51	0.0	0.04	12.33	0.00	1.942	8.59	0.18	2.9	97.1	0.0	1.41	0.77	0.82	3.41	3.4	0.003	0.52	0.0	0.04	13.91	0.00	1.921	8.61	0.63	3.0	97.0	0.0	1.32	1.08	0.79	0.85	3.12	31559	4816	17	0	4	0	0	logfile
✔	7EoU	31231	2023-02-25	2021-04-22	4.3	4.50	—	4.2	0.002	0.43	0.0	0.04	8.92	0.00	2.243	9.12	1.92	3.9	96.0	0.1	0.78	0.86	0.73	—	4.2	0.002	0.60	0.0	0.04	11.17	0.00	2.074	13.71	0.00	5.3	94.6	0.1	-0.18	1.64	0.89	0.79	—	24593	3084	8	0	19	0	0	logfile
✔	6DJM	7936	2023-02-20	2018-05-25	3.1	3.26	—	3.2	0.010	1.01	0.0	0.06	10.99	0.01	2.069	3.69	0.00	4.2	95.8	0.0	-4.16	0.67	0.84	3.65	3.2	0.004	0.59	0.0	0.04	15.31	0.00	1.924	8.10	0.16	5.0	95.0	0.0	-0.58	1.26	0.68	0.86	3.03	11768	1488	12	0	8	4	0	logfile
✔	6TBU	10452	2023-02-21	2019-11-04	3.16	3.52	—	3.4	0.012	1.50	0.0	0.18	15.74	0.00	1.526	5.99	0.00	5.0	94.9	0.1	-1.99	0.72	0.80	3.61	3.4	0.004	0.73	0.0	0.15	16.62	0.00	2.048	12.18	0.68	5.1	94.9	0.0	1.36	0.83	0.70	0.84	3.16	13733	842	3	0	12	0	6645	logfile
✔	7R15	14231	2023-02-24	2022-02-02	4.1	4.52	4.27	4.3	0.004	0.53	0.0	0.04	13.81	0.00	2.099	11.10	0.00	6.2	93.8	0.0	-0.90	0.86	0.84	—	4.3	0.003	0.56	0.0	0.04	14.10	0.00	2.141	11.06	0.08	4.9	95.1	0.0	-0.81	0.35	0.85	0.83	—	24100	3000	9	0	43	0	0	logfile
✔	7B8P	12088	2023-02-24	2020-12-13	3.54	3.61	—	3.6	0.006	0.97	0.0	0.05	14.54	0.01	2.425	4.36	0.75	4.5	95.5	0.0	-2.81	0.76	0.84	1.65	3.6	0.003	0.62	0.0	0.04	15.95	0.00	2.104	9.65	0.20	3.1	96.9	0.0	1.23	0.57	0.74	0.83	1.82	23202	3045	3	0	0	0	0	logfile
✔	7M64	23688	2023-02-16	2021-03-25	4.0	4.02	—	4.3	0.008	1.15	0.0	0.07	10.07	0.00	2.451	19.77	0.00	8.7	91.3	0.0	-3.84	0.52	0.75	—	4.3	0.003	0.87	0.0	0.04	11.23	0.00	2.241	5.93	0.00	5.2	94.8	0.0	-3.94	1.14	0.51	0.74	—	1850	250	10	0	10	0	0	logfile

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