Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XSN	33428	2023-08-10	2022-05-14	3.01	4.02	3.04	3.2	0.013	1.06	0.0	0.05	16.67	0.01	2.252	5.79	0.00	0.0	0.0	0.0	—	0.91	0.84	—	3.2	0.006	0.61	0.0	0.03	16.36	0.00	2.111	20.82	0.00	0.0	0.0	0.0	—	0.30	0.92	0.87	—	8279	0	1	387	0	0	0	logfile
✔	8B3P	15832	2023-08-15	2022-09-16	2.81	3.73	2.92	3.3	0.008	1.53	30.0	0.10	16.99	0.00	2.469	4.32	0.78	0.0	100.0	0.0	-0.91	0.82	0.93	1.32	3.3	0.003	0.57	0.0	0.03	18.16	0.00	2.171	4.79	2.13	0.0	100.0	0.0	5.63	1.33	0.79	0.89	0.09	17620	2370	55	0	0	0	0	logfile
✔	7XSL	33426	2023-08-12	2022-05-14	3.84	4.65	3.83	3.7	0.002	0.47	0.0	0.02	16.20	0.00	1.935	8.02	0.00	0.0	0.0	0.0	—	0.91	0.77	—	3.8	0.006	0.70	0.0	0.04	18.31	0.01	1.810	33.53	0.00	0.0	0.0	0.0	—	1.02	0.92	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	7YCG	33738	2023-08-10	2022-07-01	3.18	4.71	3.37	3.5	0.002	0.50	0.0	0.03	14.85	0.00	1.893	15.83	0.00	0.0	0.0	0.0	—	0.94	0.84	—	3.5	0.007	0.66	0.0	0.04	15.89	0.00	1.846	33.51	0.00	0.0	0.0	0.0	—	0.32	0.95	0.89	—	8661	0	2	404	4	0	0	logfile
✔	7YG9	33812	2023-08-10	2022-07-11	2.68	3.47	2.76	2.8	0.005	0.51	0.0	0.03	15.21	0.00	1.804	13.88	0.00	0.0	0.0	0.0	—	0.86	0.81	—	2.8	0.006	0.61	0.0	0.04	15.60	0.00	1.866	18.12	0.00	0.0	0.0	0.0	—	0.39	0.92	0.92	—	8630	0	3	404	8	0	0	logfile
✔	8HD6	34670	2023-08-11	2022-11-03	3.73	4.52	3.73	3.2	0.002	0.54	0.0	0.02	14.51	0.00	1.969	2.97	0.00	0.0	0.0	0.0	—	0.90	0.78	—	3.3	0.008	0.86	0.0	0.05	19.11	0.01	1.720	28.98	0.00	0.0	0.0	0.0	—	2.31	0.91	0.82	—	8980	0	1	419	25	0	0	logfile
✔	7XD6	33137	2023-08-11	2022-03-26	2.84	3.25	2.83	3.0	0.005	0.74	0.0	0.04	15.28	0.00	1.975	1.30	0.00	0.0	0.0	0.0	—	0.88	0.86	—	3.0	0.005	0.66	0.0	0.04	16.14	0.00	1.883	7.41	0.00	0.0	0.0	0.0	—	1.32	0.88	0.89	—	9843	0	3	459	29	0	0	logfile
✔	7YGC	33815	2023-08-10	2022-07-11	2.65	3.28	2.77	2.9	0.007	0.50	0.0	0.03	14.76	0.00	1.778	12.79	0.00	0.0	0.0	0.0	—	0.90	0.83	—	2.9	0.004	0.56	0.0	0.03	15.40	0.00	1.934	13.86	0.00	0.0	0.0	0.0	—	1.48	0.92	0.90	—	8690	0	3	407	6	0	0	logfile
✔	7XD7	33138	2023-08-10	2022-03-26	3.02	3.40	—	3.1	0.003	0.61	0.0	0.04	14.03	0.00	1.736	0.77	0.00	0.0	0.0	0.0	—	0.90	0.86	—	3.1	0.007	0.66	0.0	0.04	15.12	0.00	1.878	8.19	0.00	0.0	0.0	0.0	—	2.01	0.92	0.92	—	8693	0	1	405	30	0	0	logfile
✔	7ZJ5	14741	2023-08-12	2022-04-08	4.55	5.91	5.09	4.4	0.002	0.65	0.0	0.04	14.68	0.00	2.256	0.50	0.00	0.0	0.0	0.0	—	0.92	0.85	—	4.5	0.008	0.89	0.0	0.04	18.29	0.01	1.666	78.91	0.00	0.0	0.0	0.0	—	3.95	0.94	0.90	—	12014	0	1	374	1	0	4030	logfile
✔	6WL0	21814	2023-08-12	2020-04-17	4.4	4.62	—	4.4	0.006	0.82	0.0	0.04	18.91	0.00	2.353	8.18	0.00	0.0	100.0	0.0	-5.48	0.79	0.88	—	4.4	0.005	0.96	0.0	0.04	14.65	0.00	2.062	21.77	0.18	0.1	99.9	0.0	0.14	1.67	0.79	0.86	—	11480	1476	41	0	0	0	0	logfile
✔	8F4X	28858	2023-08-22	2022-11-11	3.01	3.72	3.03	3.4	0.004	0.55	0.0	0.03	15.82	0.00	2.226	5.99	0.00	0.6	99.4	0.0	0.06	0.84	0.83	1.71	3.4	0.002	0.42	0.0	0.03	17.34	0.00	2.299	5.10	0.12	0.1	99.9	0.0	5.43	0.45	0.84	0.85	0.51	32760	4020	60	0	0	0	0	logfile
✔	6WKX	21812	2023-08-12	2020-04-17	4.2	4.31	—	4.2	0.006	0.59	0.0	0.04	15.11	0.00	2.298	2.52	0.00	0.0	100.0	0.0	-3.67	0.77	0.90	—	4.2	0.003	0.66	0.0	0.04	16.29	0.00	2.237	9.35	0.00	0.1	99.9	0.0	4.37	1.00	0.77	0.89	—	12915	1575	105	0	0	0	0	logfile
✔	7UGD	26487	2023-08-09	2022-03-24	2.95	3.61	2.95	3.5	0.002	0.45	0.0	0.04	11.38	0.00	2.005	2.21	0.00	0.7	99.3	0.0	0.34	0.49	0.84	3.05	3.5	0.004	0.58	0.0	0.04	14.29	0.00	2.225	3.80	0.31	0.2	99.8	0.0	2.52	0.45	0.49	0.85	2.12	3079	415	1	0	3	0	0	logfile
✔	8B3Q	15833	2023-08-18	2022-09-16	2.58	3.69	2.62	3.2	0.011	1.55	0.0	0.09	14.85	0.01	2.348	13.83	0.20	0.0	100.0	0.0	-1.09	0.83	0.94	3.67	3.3	0.003	0.57	0.0	0.03	17.28	0.00	2.211	5.54	2.39	0.2	99.8	0.0	6.19	2.57	0.78	0.88	-0.07	25095	3395	75	0	0	0	0	logfile
✔	8F53	28859	2023-08-27	2022-11-11	2.93	3.13	2.94	3.1	0.002	0.43	0.0	0.03	11.82	0.00	2.361	1.10	0.00	0.6	99.4	0.0	1.20	0.69	0.77	2.64	3.1	0.004	0.52	0.0	0.03	16.73	0.00	2.207	5.29	4.09	0.3	99.7	0.0	2.97	1.13	0.61	0.81	2.46	51060	3240	60	0	0	0	26460	logfile
✔	7UL2	26589	2023-08-09	2022-04-03	2.4	2.59	2.47	2.6	0.008	1.02	0.0	0.06	12.80	0.01	2.306	6.83	0.84	1.5	98.5	0.0	1.60	0.71	0.84	4.40	2.6	0.003	0.56	0.0	0.04	14.23	0.00	2.265	2.21	1.26	0.3	99.7	0.0	2.55	1.31	0.65	0.84	2.92	2624	347	3	0	2	13	0	logfile
✔	8CUE	26999	2023-08-24	2022-05-17	3.2	3.57	3.25	3.7	0.010	1.82	0.0	0.04	21.60	0.00	2.541	2.88	0.00	1.5	98.5	0.0	0.78	0.73	0.83	2.63	3.6	0.004	0.49	0.0	0.03	15.91	0.00	2.304	6.89	0.21	0.3	99.7	0.0	2.13	0.62	0.69	0.84	2.47	37240	4900	140	0	70	0	0	logfile
✔	8FA1	28947	2023-08-09	2022-11-25	2.51	2.37	2.87	2.7	0.006	0.57	0.0	0.04	15.92	0.00	2.286	8.14	0.00	4.6	95.4	0.0	0.73	0.77	0.80	1.71	2.7	0.003	0.49	0.0	0.04	16.30	0.00	2.354	8.14	1.68	0.3	99.7	0.0	4.83	0.85	0.77	0.79	1.59	2553	339	6	0	0	0	0	logfile
✔	6TUQ	10594	2023-08-14	2020-01-08	3.9	4.52	—	4.0	0.009	1.01	0.0	0.05	11.22	0.00	2.191	8.45	3.12	0.0	100.0	0.0	-6.69	0.68	0.88	0.54	4.0	0.003	0.70	0.0	0.04	12.36	0.00	2.317	11.19	0.12	0.3	99.7	0.0	-0.42	1.65	0.69	0.88	0.65	16100	2300	50	0	0	0	0	logfile

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