Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7P0Z	13153	2023-02-20	2021-07-01	2.43	2.02	2.41	2.2	0.016	0.94	0.0	0.06	14.02	0.01	2.141	7.29	0.00	4.3	95.7	0.0	1.90	0.83	0.86	2.91	2.3	0.002	0.49	0.0	0.03	18.12	0.00	2.239	4.38	1.64	0.7	99.3	0.0	5.47	0.55	0.84	0.87	2.18	12873	1652	7	0	0	0	0	logfile
✔	6A7F	6993	2023-02-19	2018-07-03	3.4	3.51	—	3.4	0.014	1.17	0.0	0.06	11.20	0.01	2.271	4.26	0.00	0.0	100.0	0.0	-2.13	0.55	0.84	0.56	3.4	0.004	0.71	0.0	0.04	17.78	0.00	2.148	14.92	0.41	0.7	99.3	0.0	1.97	2.06	0.60	0.86	-0.08	10830	1410	30	0	0	0	0	logfile
✔	7SiP	25147	2023-02-18	2021-10-14	3.0	3.27	—	3.3	0.011	1.17	0.0	0.04	16.74	0.01	2.313	3.17	0.00	0.9	99.1	0.0	0.93	0.63	0.81	2.85	3.3	0.003	0.50	0.0	0.04	15.70	0.00	2.203	3.75	1.74	0.7	99.3	0.0	1.21	0.99	0.59	0.82	2.74	7560	892	12	0	36	20	0	logfile
✔	7BES	12158	2023-02-19	2020-12-24	2.85	2.95	2.86	2.9	0.013	1.03	0.0	0.05	10.01	0.00	2.236	7.96	0.85	0.3	99.7	0.0	0.37	0.73	0.82	3.32	2.9	0.004	0.58	0.0	0.04	15.51	0.00	2.073	10.07	2.01	0.7	99.3	0.0	0.46	1.16	0.73	0.84	3.14	9446	1234	12	6	4	0	0	logfile
✔	6WQ0	21867	2023-02-22	2020-04-28	2.8	2.89	—	2.9	0.007	0.71	0.0	0.04	13.85	0.01	2.210	4.29	0.00	1.6	98.4	0.0	-0.40	0.60	0.90	4.25	2.9	0.003	0.59	0.0	0.04	15.22	0.00	2.243	4.43	0.99	0.7	99.3	0.0	3.09	1.55	0.57	0.89	3.79	57467	6026	48	602	0	0	0	logfile
✔	6L3V	0827	2023-02-23	2019-10-15	2.63	2.90	2.72	2.9	0.009	0.92	0.0	0.04	17.16	0.01	2.218	1.00	5.45	0.5	99.5	0.0	-5.00	0.57	0.85	3.54	2.9	0.003	0.60	0.0	0.03	16.70	0.00	2.186	2.31	1.41	0.8	99.2	0.0	2.15	3.58	0.59	0.87	2.86	19416	1206	12	0	6	0	9528	logfile
✔	6oVH	20212	2023-02-19	2019-05-07	2.6	2.81	2.71	2.8	0.014	1.10	0.0	0.04	17.48	0.01	1.203	1.15	4.55	1.0	99.0	0.0	-6.34	0.75	0.87	4.63	2.8	0.003	0.75	0.0	0.04	18.69	0.00	2.055	2.87	0.38	0.8	99.2	0.0	2.63	0.98	0.77	0.88	3.77	10895	1272	36	0	68	171	0	logfile
✔	7LRC	23494	2023-02-17	2021-02-16	2.97	4.17	2.92	3.5	0.002	0.50	0.0	0.04	7.94	0.01	1.795	5.33	0.30	0.8	99.2	0.0	3.49	0.72	0.74	3.03	3.5	0.002	0.60	0.0	0.04	11.45	0.00	2.007	9.75	0.90	0.8	99.2	0.0	3.50	0.56	0.76	0.86	3.04	6202	762	6	0	6	0	0	logfile
✔	6ZBG	11154	2023-02-23	2020-06-08	3.2	3.97	3.37	3.6	0.010	1.15	0.0	0.07	13.62	0.01	2.468	1.13	0.00	1.1	98.9	0.0	0.72	0.84	0.78	2.20	3.6	0.002	0.48	0.0	0.03	15.23	0.00	2.139	4.51	0.09	0.8	99.2	0.0	4.37	1.86	0.85	0.79	1.51	19534	1160	4	0	0	0	9902	logfile
✔	7WiJ	32531	2023-02-20	2022-01-03	3.17	3.08	3.01	3.2	0.002	0.50	0.0	0.03	14.49	0.00	2.243	4.52	0.00	0.4	99.6	0.0	2.75	0.70	0.85	1.82	3.2	0.003	0.53	0.0	0.03	15.57	0.00	2.262	4.68	0.00	0.8	99.2	0.0	3.40	0.26	0.71	0.87	1.79	12396	1602	6	0	0	0	0	logfile
✔	7PCH	13320	2023-02-19	2021-08-03	2.89	3.82	2.93	3.4	0.012	1.54	0.0	0.10	13.62	0.01	2.343	0.97	0.55	3.7	96.3	0.0	1.22	0.89	0.83	3.70	3.4	0.004	0.64	0.0	0.04	14.40	0.00	2.170	6.27	0.55	0.8	99.2	0.0	2.33	1.58	0.91	0.89	3.66	10798	1254	16	0	4	510	0	logfile
✔	7Q66	13853	2023-02-17	2021-11-05	2.79	2.87	2.63	2.9	0.021	1.42	0.0	0.11	12.58	0.01	2.277	13.59	6.52	0.0	100.0	0.0	-4.18	0.63	0.84	3.82	2.9	0.004	0.75	0.0	0.04	16.09	0.00	2.208	12.61	6.92	0.8	99.2	0.0	-4.23	0.65	0.62	0.88	4.75	4807	682	22	0	0	0	0	logfile
✔	7o6Q	12740	2023-02-18	2021-04-12	1.88	2.21	—	1.9	0.010	0.71	0.0	0.05	12.80	0.01	2.115	4.83	1.25	3.2	96.8	0.0	-1.61	0.88	0.85	7.59	1.9	0.002	0.47	0.0	0.04	14.51	0.00	2.189	4.72	1.63	0.8	99.2	0.0	3.42	0.36	0.90	0.90	6.06	7999	997	8	0	0	399	0	logfile
✔	7WKS	32568	2023-02-17	2022-01-11	3.0	2.57	—	3.0	0.002	0.54	0.0	0.04	13.07	0.00	2.162	7.24	0.00	1.1	98.9	0.0	1.77	0.60	0.81	2.12	3.0	0.003	0.55	0.0	0.04	16.04	0.00	2.218	8.33	0.78	0.8	99.2	0.0	1.85	0.91	0.59	0.83	1.38	5874	754	2	0	0	0	0	logfile
✔	7ZCU	14633	2023-02-19	2022-03-28	2.7	2.42	2.63	2.6	0.013	2.78	0.0	0.04	17.08	0.01	2.218	3.71	0.00	1.8	98.2	0.0	1.48	0.65	0.81	3.95	2.6	0.006	1.54	0.0	0.04	19.09	0.00	2.117	8.45	1.27	0.8	99.2	0.0	3.01	0.79	0.68	0.86	2.42	10149	958	47	0	42	9	0	logfile
✔	7oNJ	12996	2023-02-22	2021-05-25	2.3	2.52	2.24	2.5	0.011	0.97	0.0	0.06	18.45	0.00	2.155	8.48	0.47	0.8	99.2	0.0	-0.25	0.76	0.88	5.16	2.5	0.003	0.46	0.0	0.04	18.15	0.00	2.176	7.63	0.40	0.8	99.2	0.0	2.25	1.55	0.76	0.89	4.29	16947	1834	21	0	63	266	0	logfile
✔	6RAH	4775	2023-02-19	2019-04-06	2.8	2.99	3.01	2.9	0.008	1.53	9.0	0.09	9.90	0.01	2.022	9.87	0.00	2.1	97.7	0.2	-2.51	0.72	0.81	2.84	2.9	0.003	0.64	0.0	0.04	15.87	0.00	1.911	6.71	1.63	0.9	99.1	0.0	1.79	0.72	0.76	0.85	2.10	10161	1277	7	0	4	4	0	logfile
✔	7o0W	12681	2023-02-22	2021-03-27	2.47	2.42	—	2.3	0.017	4.29	0.0	0.05	24.76	0.01	2.010	1.97	0.28	1.4	98.6	0.0	1.25	0.82	0.86	5.37	2.3	0.003	1.66	0.0	0.03	21.33	0.00	1.950	7.87	1.13	0.9	99.1	0.0	3.95	1.13	0.83	0.88	3.99	56476	5076	236	0	320	406	0	logfile
✔	7o0U	12679	2023-02-22	2021-03-27	2.35	2.42	—	2.3	0.017	4.32	0.0	0.05	24.86	0.01	2.121	1.72	0.41	1.2	98.8	0.0	1.39	0.83	0.86	5.52	2.3	0.003	1.69	0.0	0.03	21.19	0.00	1.841	7.76	1.07	0.9	99.1	0.0	3.90	0.51	0.84	0.89	4.22	55758	4972	236	0	320	491	0	logfile
✔	7Y5H	33620	2023-02-17	2022-06-17	3.72	4.13	3.68	4.1	0.002	0.39	0.0	0.04	12.51	0.00	2.030	3.76	0.00	0.5	99.5	0.0	0.06	0.63	0.77	1.35	4.1	0.003	0.59	0.0	0.04	15.31	0.00	2.037	6.90	0.57	0.9	99.1	0.0	1.70	1.10	0.66	0.80	1.37	4704	600	4	0	4	0	0	logfile

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