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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6GTD | 0062 | 2023-02-17 | 2018-06-18 | 4.24 | 4.28 | — | 3.9 | 0.009 | 1.26 | 0.0 | 0.08 | 21.74 | 0.01 | 2.138 | 13.01 | 0.00 | 19.8 | 80.2 | 0.0 | -5.72 | 0.78 | 0.65 | — | 3.8 | 0.005 | 0.83 | 0.0 | 0.05 | 20.33 | 0.00 | 2.025 | 16.75 | 0.00 | 19.3 | 80.7 | 0.0 | -3.20 | 0.98 | 0.79 | 0.67 | — | 6456 | 1269 | 4 | 66 | 0 | 0 | 0 | logfile |
✔ | 6TNF | 10531 | 2023-02-19 | 2019-12-07 | 3.8 | 2.90 | 3.67 | 2.7 | 0.032 | 1.64 | 0.0 | 0.32 | 19.07 | 0.01 | 2.236 | 8.40 | 0.00 | 17.8 | 81.5 | 0.7 | -5.32 | 0.60 | 0.56 | — | 2.6 | 0.005 | 1.03 | 0.0 | 0.08 | 13.61 | 0.01 | 2.106 | 13.33 | 0.00 | 19.1 | 80.8 | 0.1 | -3.46 | 0.54 | 0.65 | 0.64 | — | 9559 | 2206 | 5 | 0 | 66 | 0 | 0 | logfile |
✔ | 7U15 | 26278 | 2023-02-18 | 2022-02-19 | 3.0 | 3.14 | — | 3.3 | 0.006 | 1.18 | 0.0 | 0.12 | 17.37 | 0.01 | 1.886 | 12.16 | 3.44 | 3.8 | 96.2 | 0.0 | -6.51 | 0.26 | 0.64 | 1.55 | 3.2 | 0.004 | 0.77 | 0.0 | 0.11 | 17.01 | 0.00 | 1.892 | 13.92 | 4.76 | 18.8 | 81.2 | 0.0 | -5.30 | 1.49 | 0.28 | 0.71 | 2.28 | 6684 | 405 | 6 | 0 | 12 | 0 | 3255 | logfile |
✔ | 6CET | 7465 | 2023-02-21 | 2018-02-12 | 4.4 | 4.41 | — | 4.3 | 0.007 | 1.42 | 0.0 | 0.07 | 13.40 | 0.01 | 2.251 | 8.50 | 0.96 | 19.7 | 80.1 | 0.2 | -5.52 | 0.67 | 0.62 | — | 4.3 | 0.004 | 0.94 | 0.0 | 0.05 | 14.01 | 0.01 | 2.112 | 19.33 | 0.06 | 18.7 | 81.3 | 0.0 | -3.78 | 1.59 | 0.68 | 0.63 | — | 14012 | 1741 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MJQ | 23882 | 2023-02-21 | 2021-04-20 | 4.2 | 4.29 | — | 4.2 | 0.009 | 1.55 | 0.0 | 0.15 | 8.06 | 0.01 | 1.552 | 6.01 | 0.00 | 9.4 | 90.6 | 0.0 | -1.25 | 0.52 | 0.66 | — | 4.2 | 0.005 | 0.95 | 0.0 | 0.05 | 9.32 | 0.01 | 2.128 | 5.46 | 0.00 | 18.6 | 81.3 | 0.2 | -3.11 | 1.84 | 0.60 | 0.76 | — | 14976 | 2982 | 13 | 0 | 10 | 0 | 0 | logfile |
✔ | 7WoP | 32654 | 2023-02-17 | 2022-01-22 | 3.51 | 2.51 | — | 3.4 | 0.002 | 0.54 | 0.0 | 0.04 | 10.83 | 0.00 | 2.203 | 10.97 | 9.21 | 11.4 | 88.6 | 0.0 | -4.81 | 0.64 | 0.66 | 1.96 | 3.4 | 0.005 | 0.85 | 0.0 | 0.05 | 14.87 | 0.01 | 2.063 | 24.57 | 0.72 | 18.5 | 81.5 | 0.0 | -3.82 | 1.29 | 0.65 | 0.69 | 2.10 | 5107 | 669 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N95 | 24250 | 2023-02-18 | 2021-06-16 | 4.1 | 3.45 | — | 2.1 | 0.002 | 0.74 | 0.0 | 0.00 | 5.05 | 0.00 | 2.573 | 0.10 | 0.00 | 7.1 | 92.3 | 0.6 | -1.14 | 0.78 | 0.70 | — | 2.1 | 0.004 | 1.01 | 0.0 | 0.00 | 4.97 | 0.00 | 2.503 | 6.53 | 0.00 | 18.1 | 81.7 | 0.2 | -3.27 | 1.81 | 0.85 | 0.83 | — | 7299 | 2433 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HDD | 0204 | 2023-02-26 | 2018-08-17 | 4.5 | 5.28 | — | 4.4 | 0.009 | 1.36 | 3.0 | 0.08 | 12.60 | 0.01 | 2.220 | 12.08 | 1.07 | 18.3 | 81.6 | 0.1 | -6.11 | 0.74 | 0.42 | — | 8.0 | 0.005 | 1.06 | 7.0 | 0.06 | 13.43 | 0.01 | 1.446 | 33.80 | 0.00 | 17.6 | 81.8 | 0.6 | -3.77 | 5.52 | 0.80 | 0.43 | — | 28154 | 3605 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NYJ | 0544 | 2023-02-27 | 2019-02-11 | 3.2 | 3.93 | — | 3.8 | 0.008 | 1.06 | 0.0 | 0.06 | 10.60 | 0.01 | 2.247 | 7.25 | 0.54 | 15.2 | 84.8 | 0.0 | -5.28 | 0.82 | 0.77 | 3.30 | 3.8 | 0.007 | 0.80 | 0.0 | 0.05 | 12.81 | 0.00 | 2.204 | 15.43 | 0.38 | 18.1 | 81.9 | 0.0 | -4.31 | 0.58 | 0.83 | 0.79 | 3.08 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KXY | 23067 | 2023-02-19 | 2020-12-05 | 4.4 | 4.55 | 4.44 | 4.5 | 0.004 | 0.82 | 0.0 | 0.05 | 15.13 | 0.01 | 2.197 | 19.28 | 7.18 | 26.0 | 69.8 | 4.2 | -5.90 | 0.63 | 0.60 | — | 4.5 | 0.004 | 0.89 | 0.0 | 0.05 | 14.76 | 0.01 | 2.049 | 27.06 | 0.00 | 17.9 | 82.0 | 0.1 | -5.00 | 0.62 | 0.64 | 0.62 | — | 9510 | 1181 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JLX | 22383 | 2023-02-17 | 2020-07-30 | 4.6 | 3.86 | — | 3.7 | 0.001 | 0.42 | 0.0 | 0.04 | 3.80 | 0.00 | 2.240 | 2.96 | 0.00 | 6.7 | 93.3 | 0.0 | 1.23 | 0.54 | 0.51 | — | 3.8 | 0.003 | 0.75 | 0.0 | 0.04 | 7.17 | 0.00 | 2.306 | 8.03 | 0.00 | 17.7 | 82.3 | 0.0 | -2.25 | 2.42 | 0.48 | 0.53 | — | 3288 | 664 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6L2T | 0814 | 2023-02-21 | 2019-10-06 | 4.1 | 4.14 | — | 4.2 | 0.003 | 0.61 | 0.0 | 0.05 | 12.33 | 0.00 | 2.222 | 5.89 | 0.15 | 13.8 | 86.0 | 0.2 | -5.72 | 0.61 | 0.76 | — | 4.2 | 0.005 | 0.77 | 0.0 | 0.05 | 12.54 | 0.01 | 2.083 | 8.68 | 0.00 | 17.6 | 82.3 | 0.1 | -4.18 | 0.52 | 0.61 | 0.77 | — | 13604 | 1889 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PiG | 20350 | 2023-02-26 | 2019-06-26 | 3.5 | 3.54 | 3.59 | 3.5 | 0.014 | 1.75 | 1.0 | 0.09 | 16.07 | 0.00 | 2.173 | 1.98 | 1.58 | 15.2 | 81.4 | 3.5 | -4.85 | 0.60 | 0.76 | 2.54 | 3.5 | 0.005 | 0.87 | 0.0 | 0.05 | 17.22 | 0.01 | 2.097 | 12.08 | 0.49 | 17.1 | 82.3 | 0.6 | -3.03 | 0.58 | 0.66 | 0.80 | 2.35 | 28867 | 3439 | 11 | 60 | 0 | 0 | 0 | logfile |
✔ | 6ND4 | 0441 | 2023-02-24 | 2018-12-13 | 4.3 | 4.41 | — | 4.2 | 0.010 | 1.03 | 0.0 | 0.06 | 14.55 | 0.02 | 2.230 | 5.19 | 0.00 | 6.4 | 93.6 | 0.1 | -3.63 | 0.80 | 0.66 | — | 4.2 | 0.007 | 1.08 | 0.0 | 0.05 | 15.04 | 0.01 | 1.926 | 19.87 | 0.00 | 17.6 | 82.3 | 0.1 | -3.59 | 1.14 | 0.85 | 0.77 | — | 63993 | 9225 | 30 | 551 | 1306 | 0 | 0 | logfile |
✔ | 6RTB | 4996 | 2023-02-17 | 2019-05-22 | 3.46 | 3.57 | — | 3.5 | 0.009 | 1.23 | 0.0 | 0.07 | 15.08 | 0.01 | 2.122 | 6.27 | 2.61 | 18.9 | 80.9 | 0.2 | -4.64 | 0.62 | 0.79 | 4.22 | 3.5 | 0.004 | 0.76 | 0.0 | 0.05 | 15.59 | 0.00 | 2.167 | 12.95 | 1.53 | 17.5 | 82.5 | 0.0 | -4.08 | 0.60 | 0.62 | 0.80 | 3.79 | 4681 | 699 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RT0 | 4994 | 2023-02-17 | 2019-05-22 | 3.1 | 3.18 | — | 3.1 | 0.006 | 0.97 | 0.0 | 0.06 | 14.23 | 0.00 | 2.415 | 2.11 | 1.06 | 11.5 | 88.5 | 0.0 | -3.76 | 0.71 | 0.84 | 6.51 | 3.1 | 0.009 | 0.89 | 0.0 | 0.06 | 16.41 | 0.00 | 2.255 | 5.41 | 0.43 | 17.4 | 82.6 | 0.0 | -4.13 | 0.82 | 0.72 | 0.86 | 5.76 | 4925 | 735 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Z7Q | 11112 | 2023-02-22 | 2020-06-01 | 3.8 | 4.10 | 3.58 | 4.0 | 0.006 | 0.77 | 0.0 | 0.05 | 14.47 | 0.00 | 2.176 | 21.13 | 0.00 | 28.6 | 70.7 | 0.7 | -6.49 | 0.73 | 0.82 | 1.75 | 4.0 | 0.005 | 0.92 | 0.0 | 0.05 | 16.92 | 0.00 | 2.170 | 21.04 | 0.91 | 17.3 | 82.6 | 0.0 | -4.35 | 1.20 | 0.75 | 0.83 | 1.27 | 16665 | 2080 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oRQ | 20178 | 2023-02-23 | 2019-04-30 | 4.4 | 4.71 | 4.38 | 4.5 | 0.007 | 1.26 | 0.0 | 0.07 | 12.59 | 0.01 | 2.039 | 6.79 | 1.04 | 16.3 | 83.4 | 0.3 | -4.97 | 0.65 | 0.83 | — | 4.5 | 0.006 | 0.92 | 0.0 | 0.05 | 13.11 | 0.01 | 2.071 | 21.62 | 0.28 | 17.4 | 82.6 | 0.0 | -3.82 | 1.59 | 0.65 | 0.84 | — | 20176 | 2430 | 40 | 0 | 83 | 0 | 0 | logfile |
✔ | 7ZCF | 14629 | 2023-02-17 | 2022-03-28 | 4.0 | 4.23 | 3.97 | 4.2 | 0.003 | 0.65 | 0.0 | 0.04 | 14.10 | 0.00 | 2.089 | 10.15 | 0.56 | 14.8 | 85.2 | 0.0 | -2.45 | 0.67 | 0.71 | — | 4.2 | 0.003 | 0.73 | 0.0 | 0.04 | 15.97 | 0.00 | 2.100 | 12.61 | 0.00 | 17.4 | 82.6 | 0.0 | -2.81 | 0.56 | 0.69 | 0.76 | — | 3312 | 426 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 5o4U | 3746 | 2023-02-25 | 2017-05-31 | 4.2 | 4.27 | 4.23 | 4.3 | 0.007 | 1.26 | 2.0 | 0.08 | 11.28 | 0.01 | 0.586 | 15.82 | 1.75 | 17.3 | 82.7 | 0.0 | -4.67 | 0.39 | 0.70 | — | 4.2 | 0.004 | 0.85 | 0.0 | 0.06 | 12.52 | 0.01 | 2.119 | 19.27 | 0.04 | 17.3 | 82.7 | 0.0 | -3.04 | 1.34 | 0.45 | 0.76 | — | 24528 | 3312 | 16 | 0 | 0 | 0 | 0 | logfile |