Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6TJo	10512	2022-11-29	2019-11-26	3.2	3.43	2.57	3.5	0.013	1.18	0.0	0.07	9.67	0.01	2.394	2.80	0.00	12.7	87.3	0.0	-4.63	0.36	0.76	4.64	3.5	0.006	0.88	0.0	0.05	13.23	0.00	2.284	10.02	0.35	11.1	88.9	0.0	-3.87	1.40	0.36	0.79	3.90	2439	321	3	0	0	0	0	logfile
✔	6oSL	20185	2022-11-29	2019-05-01	3.0	3.04	—	3.0	0.010	1.06	0.0	0.07	13.47	0.00	2.308	12.61	2.44	12.3	87.7	0.0	-4.40	0.45	0.79	1.34	3.0	0.005	0.80	0.0	0.06	16.12	0.00	2.266	12.12	8.54	10.9	89.1	0.0	-3.41	1.25	0.46	0.80	2.18	4060	590	10	0	0	0	0	logfile
✔	7B6E	12053	2022-11-29	2020-12-07	4.5	2.79	—	5.1	0.005	1.03	0.0	0.05	15.04	0.01	2.129	36.28	0.00	10.9	89.1	0.0	-3.88	0.62	0.66	—	4.9	0.003	0.98	0.0	0.05	14.71	0.00	2.119	24.18	0.00	10.9	89.1	0.0	-1.33	0.86	0.61	0.66	—	2205	269	1	0	0	0	0	logfile
✔	6i52	4410	2022-11-29	2018-11-12	4.7	4.78	—	8.9	0.002	0.57	0.0	0.04	16.56	0.00	2.303	10.25	5.70	11.6	87.5	0.9	-4.07	0.73	0.54	—	8.7	0.003	0.81	0.0	0.05	17.91	0.00	2.225	19.43	0.00	10.1	89.2	0.7	-2.59	3.55	0.76	0.63	—	3856	432	4	20	0	0	0	logfile
✔	5LY6	4118	2022-11-29	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.62	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.004	0.81	0.0	0.04	13.96	0.00	2.167	15.68	0.24	10.2	89.3	0.4	-2.62	3.61	0.40	0.77	—	3725	471	1	0	0	0	0	logfile
✔	6VHL	21207	2022-11-29	2020-01-10	3.3	3.60	—	3.5	0.007	1.03	0.0	0.07	15.85	0.01	1.791	16.17	4.48	14.7	85.3	0.0	-6.30	0.26	0.70	3.54	3.7	0.003	0.73	0.0	0.04	16.47	0.00	2.338	9.12	0.75	10.7	89.3	0.0	-3.61	2.63	0.27	0.69	3.44	1190	158	4	0	0	0	0	logfile
✔	6ZRF	11380	2022-11-29	2020-07-13	3.6	3.66	1.96	3.6	0.014	1.03	0.0	0.05	13.43	0.00	1.993	42.14	0.00	4.9	95.1	0.0	-6.22	0.67	0.79	1.84	3.7	0.003	0.73	0.0	0.04	14.44	0.00	2.284	18.31	0.42	10.6	89.4	0.0	-5.84	0.52	0.69	0.81	3.45	2220	300	12	0	0	0	0	logfile
✔	7UNT	26632	2022-11-29	2022-04-11	3.6	3.69	3.38	3.4	0.002	0.60	0.0	0.05	14.28	0.00	2.356	6.56	0.00	9.1	90.5	0.4	-1.58	0.47	0.73	1.84	3.5	0.004	0.67	0.0	0.05	15.69	0.00	2.256	9.21	0.70	10.3	89.4	0.2	-1.22	0.66	0.49	0.84	1.39	3270	472	1	1	0	0	0	logfile
✔	7KU5	23034	2022-11-29	2020-11-24	3.76	3.63	—	3.9	0.006	1.29	0.0	0.07	14.85	0.01	2.420	3.63	0.00	12.8	87.2	0.0	-5.41	0.23	0.65	-0.48	3.9	0.002	0.73	0.0	0.04	16.42	0.01	2.247	10.16	0.00	10.5	89.5	0.0	-1.80	1.30	0.25	0.68	2.01	750	88	1	0	4	0	0	logfile
✔	7F63	31471	2022-11-29	2021-06-24	3.9	4.20	—	4.0	0.002	0.58	0.0	0.04	13.34	0.00	2.136	12.60	0.00	8.3	91.4	0.2	-2.31	0.63	0.62	1.27	4.0	0.003	0.79	0.0	0.05	15.84	0.00	2.142	15.49	0.54	10.0	89.5	0.5	-2.58	1.48	0.65	0.70	1.33	3375	429	3	0	0	0	0	logfile
✔	6VH7	21200	2022-11-29	2020-01-09	3.8	3.84	—	4.1	0.007	1.03	0.0	0.05	15.14	0.01	2.318	28.35	2.13	12.4	87.6	0.0	-4.78	0.54	0.62	2.62	4.0	0.004	0.82	0.0	0.05	16.62	0.00	2.299	12.42	0.00	10.5	89.5	0.0	-4.26	3.67	0.59	0.69	2.04	4878	642	6	0	0	0	0	logfile
✔	3KTT	5148	2022-11-29	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	180.45	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	2.0	0.004	1.18	0.0	0.05	17.18	0.01	2.023	26.84	0.49	9.4	89.6	1.0	-2.22	1.72	0.31	0.41	—	3855	513	1	0	0	0	0	logfile
✔	7UAQ	26430	2022-11-29	2022-03-13	3.1	3.91	2.90	3.7	0.006	1.16	2.0	0.07	12.64	0.01	2.101	25.20	0.22	11.5	88.5	0.0	-2.56	0.57	0.74	2.32	3.7	0.005	0.84	0.0	0.05	14.98	0.00	2.126	20.16	1.08	10.3	89.7	0.0	-2.17	1.27	0.58	0.79	2.01	4362	533	8	0	10	0	0	logfile
✔	7U13	26276	2022-11-29	2022-02-19	2.9	3.67	—	4.2	0.017	2.41	0.0	0.07	17.78	0.01	2.120	29.95	6.30	11.3	88.0	0.8	-3.06	0.30	0.47	1.37	4.2	0.004	0.95	0.0	0.06	18.61	0.00	2.175	14.76	3.41	10.3	89.7	0.0	-4.10	6.72	0.32	0.56	1.24	3456	405	6	0	12	0	0	logfile
✔	7UN5	26613	2022-11-29	2022-04-08	3.13	3.63	3.08	3.6	0.004	0.72	0.0	0.04	14.46	0.00	2.387	12.34	0.51	7.0	93.0	0.0	-3.83	0.40	0.80	4.50	3.6	0.005	0.75	0.0	0.05	15.16	0.00	2.232	12.34	0.77	10.3	89.7	0.0	-3.94	0.50	0.35	0.74	4.69	4380	620	10	0	0	0	0	logfile
✔	7EY4	31377	2022-11-29	2021-05-29	3.69	3.90	—	3.9	0.007	0.89	0.0	0.05	14.08	0.01	2.150	10.63	0.20	13.5	86.1	0.4	-2.54	0.63	0.78	3.57	3.9	0.003	0.75	0.0	0.05	16.16	0.01	2.183	9.10	0.40	10.3	89.7	0.0	-1.58	1.30	0.65	0.81	3.07	4683	585	5	0	3	0	0	logfile
✔	7UMQ	26607	2022-11-29	2022-04-07	3.29	3.64	3.16	4.2	0.023	2.11	0.0	0.10	9.85	0.01	2.540	3.14	0.00	10.0	90.0	0.0	-3.35	0.51	0.74	5.90	3.8	0.003	0.80	0.0	0.04	14.16	0.00	2.326	16.18	1.54	10.3	89.7	0.0	-4.95	3.38	0.43	0.75	4.26	4380	620	10	0	0	0	0	logfile
✔	7oZH	13124	2022-11-29	2021-06-28	3.02	3.20	1.84	3.3	0.024	1.40	0.0	0.09	7.44	0.01	2.546	14.72	0.00	5.4	94.6	0.0	-2.78	0.33	0.60	4.68	3.3	0.005	0.74	0.0	0.05	14.80	0.00	2.352	19.62	0.77	10.2	89.8	0.0	-2.61	2.54	0.40	0.70	1.11	3890	580	10	0	0	0	0	logfile
✔	6N3A	9349	2022-11-29	2018-11-14	3.3	3.44	—	3.6	0.008	1.14	0.0	0.05	14.53	0.01	2.469	17.25	0.00	8.9	91.1	0.0	-5.23	0.49	0.76	3.75	3.6	0.005	0.96	0.0	0.04	19.28	0.00	2.210	17.25	2.05	10.2	89.8	0.0	-5.15	1.99	0.50	0.78	2.70	4310	600	20	0	0	0	0	logfile
✔	7WP5	32669	2022-11-29	2022-01-22	3.9	4.08	—	4.0	0.005	1.02	0.0	0.06	14.06	0.01	2.278	4.75	0.56	9.1	90.7	0.2	-4.27	0.59	0.74	2.00	4.0	0.003	0.76	0.0	0.05	16.66	0.00	2.172	12.26	0.28	9.8	90.0	0.2	-2.82	0.64	0.59	0.74	1.45	3340	425	4	0	2	0	0	logfile

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