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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7K0T | 22616 | 2023-08-12 | 2020-09-05 | 4.3 | 4.52 | 4.29 | 4.2 | 0.003 | 0.65 | 1.0 | 0.04 | 13.80 | 0.00 | 1.909 | 7.65 | 0.63 | 7.5 | 92.4 | 0.2 | -0.19 | 0.84 | 0.76 | — | 4.2 | 0.036 | 2.69 | 59.0 | 0.11 | 15.80 | 0.02 | 1.195 | 109.81 | 0.00 | 43.4 | 55.0 | 1.6 | -7.43 | 1.92 | 0.86 | 0.83 | — | 115905 | 12820 | 8 | 0 | 3608 | 0 | 0 | logfile |
✔ | 3J9L | 2871 | 2023-08-11 | 2015-02-04 | 4.0 | 4.10 | — | 4.0 | 0.022 | 1.96 | 105.0 | 0.12 | 19.47 | 0.01 | 1.058 | 81.48 | 27.30 | 10.5 | 88.6 | 0.9 | -4.09 | 0.66 | 0.68 | — | 4.0 | 0.048 | 3.15 | 43.0 | 0.12 | 19.35 | 0.02 | 1.814 | 99.41 | 4.32 | 39.9 | 58.2 | 1.9 | -7.71 | 2.86 | 0.73 | 0.81 | — | 112951 | 8688 | 31 | 0 | 8320 | 0 | 0 | logfile |
✔ | 7TDK | 25832 | 2023-08-13 | 2021-12-31 | 3.8 | 4.07 | 3.85 | 3.8 | 0.004 | 0.87 | 0.0 | 0.04 | 15.75 | 0.01 | 2.210 | 4.97 | 0.46 | 5.7 | 94.1 | 0.1 | -0.20 | 0.85 | 0.77 | 1.07 | 3.8 | 0.051 | 3.21 | 71.0 | 0.14 | 19.99 | 0.02 | 1.573 | 100.23 | 3.61 | 38.4 | 59.1 | 2.5 | -7.48 | 2.34 | 0.89 | 0.86 | 1.15 | 117136 | 12936 | 8 | 0 | 3616 | 0 | 0 | logfile |
✔ | 7TDG | 25828 | 2023-08-13 | 2021-12-31 | 3.8 | 4.00 | 3.85 | 3.8 | 0.086 | 0.81 | 1.0 | 0.04 | 13.97 | 0.00 | 0.831 | 7.84 | 0.28 | 6.6 | 93.4 | 0.1 | -0.49 | 0.83 | 0.79 | 0.99 | 3.8 | 0.056 | 3.18 | 114.0 | 0.16 | 19.71 | 0.02 | 1.714 | 88.48 | 3.87 | 38.2 | 59.5 | 2.3 | -7.40 | 1.18 | 0.86 | 0.86 | 1.36 | 117345 | 12936 | 8 | 0 | 3624 | 0 | 0 | logfile |
✔ | 7LQH | 23486 | 2023-08-12 | 2021-02-13 | 3.4 | 3.12 | — | 3.4 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 2.098 | 31.15 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.59 | 0.80 | 5.83 | 3.2 | 0.111 | 4.25 | 190.0 | 0.31 | 24.04 | 0.02 | 1.610 | 112.99 | 4.28 | 40.1 | 59.5 | 0.3 | -8.01 | 3.50 | 0.66 | 0.87 | 3.32 | 12096 | 1152 | 144 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TDJ | 25831 | 2023-08-13 | 2021-12-31 | 3.7 | 3.93 | 3.79 | 3.8 | 0.005 | 0.91 | 0.0 | 0.04 | 15.74 | 0.01 | 2.223 | 5.62 | 0.37 | 6.0 | 93.9 | 0.2 | -0.38 | 0.85 | 0.77 | 1.01 | 3.7 | 0.056 | 3.34 | 152.0 | 0.16 | 20.01 | 0.02 | 1.738 | 94.23 | 2.94 | 37.0 | 60.2 | 2.7 | -7.31 | 1.34 | 0.89 | 0.86 | 1.52 | 117112 | 12932 | 12 | 0 | 3616 | 8 | 0 | logfile |
✔ | 6oDY | 20024 | 2023-08-19 | 2019-03-27 | 3.8 | 3.40 | — | 3.2 | 0.010 | 1.59 | 18.0 | 0.11 | 15.38 | 0.01 | 1.264 | 18.28 | 3.15 | 16.6 | 83.3 | 0.0 | -5.02 | 0.66 | 0.62 | 1.16 | 3.2 | 0.030 | 3.05 | 5.0 | 0.14 | 20.12 | 0.02 | 1.721 | 102.91 | 3.91 | 37.7 | 61.0 | 1.3 | -7.26 | 1.53 | 0.69 | 0.69 | 1.79 | 28116 | 2832 | 6 | 0 | 1326 | 0 | 0 | logfile |
✔ | 7TDi | 25830 | 2023-08-13 | 2021-12-31 | 3.3 | 3.81 | 3.62 | 3.6 | 0.005 | 0.81 | 0.0 | 0.04 | 16.22 | 0.01 | 2.159 | 4.24 | 0.85 | 4.4 | 95.5 | 0.1 | -0.18 | 0.82 | 0.72 | 0.41 | 3.6 | 0.060 | 3.45 | 153.0 | 0.17 | 19.75 | 0.02 | 1.655 | 78.91 | 3.69 | 33.8 | 63.9 | 2.3 | -7.06 | 1.45 | 0.89 | 0.87 | 1.83 | 117132 | 12936 | 8 | 0 | 3616 | 0 | 0 | logfile |
✔ | 7LQG | 23485 | 2023-08-12 | 2021-02-13 | 3.4 | 3.13 | — | 3.3 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 1.842 | 31.02 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.61 | 0.81 | 5.57 | 3.1 | 0.110 | 4.37 | 186.0 | 0.30 | 23.67 | 0.02 | 1.819 | 120.04 | 3.70 | 35.6 | 64.4 | 0.0 | -8.04 | 1.65 | 0.66 | 0.86 | 3.86 | 12096 | 1152 | 144 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JSH | 22454 | 2023-08-10 | 2020-08-14 | 4.4 | 7.07 | — | 17.0 | 0.001 | 0.20 | 0.0 | 0.02 | 8.81 | 0.00 | 2.581 | 0.00 | 0.00 | 13.1 | 83.7 | 3.2 | -3.27 | 0.49 | 0.25 | — | 5.3 | 0.005 | 1.30 | 0.0 | 0.05 | 13.69 | 0.01 | 1.942 | 27.17 | 0.00 | 31.8 | 67.9 | 0.3 | -5.48 | 6.11 | 0.73 | 0.61 | — | 7916 | 1904 | 8 | 15 | 0 | 0 | 0 | logfile |
✔ | 5LiJ | 4054 | 2023-08-09 | 2016-07-14 | 4.2 | 3.63 | — | 4.2 | 0.009 | 2.92 | 4.0 | 0.17 | 15.82 | 0.01 | 2.249 | 25.64 | 0.00 | 10.7 | 89.3 | 0.0 | -6.36 | 0.85 | 0.76 | — | 3.8 | 0.005 | 1.18 | 0.0 | 0.04 | 10.31 | 0.00 | 2.148 | 15.12 | 0.00 | 32.0 | 68.0 | 0.0 | -5.66 | 1.48 | 0.86 | 0.78 | — | 761 | 152 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UMZ | 26610 | 2023-08-11 | 2022-04-08 | 3.09 | 3.37 | 3.21 | 3.3 | 0.004 | 0.87 | 0.0 | 0.04 | 17.35 | 0.01 | 2.198 | 7.00 | 2.38 | 6.1 | 93.3 | 0.6 | -1.01 | 0.68 | 0.70 | 1.58 | 3.3 | 0.060 | 2.98 | 178.0 | 0.19 | 19.49 | 0.02 | 0.810 | 51.66 | 2.96 | 27.0 | 70.3 | 2.8 | -6.90 | 1.64 | 0.75 | 0.86 | 2.31 | 111437 | 12516 | 12 | 0 | 3221 | 8 | 0 | logfile |
✔ | 7XYM | 33522 | 2023-08-13 | 2022-06-01 | 3.3 | 3.70 | 3.42 | 3.6 | 0.009 | 1.58 | 6.0 | 0.07 | 14.87 | 0.01 | 1.028 | 29.59 | 0.49 | 25.5 | 71.6 | 2.9 | -6.19 | 0.71 | 0.74 | 1.93 | 3.6 | 0.005 | 1.11 | 0.0 | 0.06 | 16.43 | 0.01 | 2.042 | 25.55 | 0.57 | 26.6 | 71.6 | 1.8 | -4.90 | 1.14 | 0.70 | 0.79 | 1.95 | 11436 | 1464 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JAC | 6343 | 2023-08-14 | 2015-06-05 | 4.8 | 6.42 | — | 9.4 | 0.007 | 1.81 | 3.0 | 0.07 | 10.64 | 0.03 | 1.020 | 57.64 | 4.17 | 5.0 | 90.3 | 4.8 | 1.36 | 0.42 | 0.40 | — | 9.1 | 0.012 | 1.69 | 0.0 | 0.06 | 13.69 | 0.01 | 1.923 | 77.11 | 0.00 | 27.1 | 71.7 | 1.2 | -5.31 | 3.69 | 0.54 | 0.61 | — | 15741 | 1716 | 3 | 0 | 1038 | 0 | 0 | logfile |
✔ | 6oSM | 20186 | 2023-08-09 | 2019-05-01 | 3.4 | 3.31 | — | 3.4 | 0.012 | 1.45 | 0.0 | 0.09 | 14.06 | 0.00 | 2.183 | 28.91 | 14.88 | 34.5 | 65.5 | 0.0 | -5.34 | 0.46 | 0.74 | 2.68 | 3.4 | 0.007 | 1.25 | 0.0 | 0.07 | 15.44 | 0.00 | 2.184 | 23.54 | 1.46 | 28.1 | 71.9 | 0.0 | -5.14 | 3.39 | 0.44 | 0.75 | 3.23 | 4100 | 600 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7L7H | 23212 | 2023-08-09 | 2020-12-28 | 4.0 | 2.39 | — | 4.0 | 0.008 | 1.47 | 0.0 | 0.08 | 15.10 | 0.01 | 2.199 | 13.87 | 3.53 | 36.3 | 63.7 | 0.0 | -6.00 | 0.47 | 0.60 | — | 4.0 | 0.004 | 0.94 | 0.0 | 0.06 | 16.29 | 0.00 | 2.073 | 19.50 | 1.96 | 27.7 | 72.3 | 0.0 | -4.33 | 0.93 | 0.51 | 0.65 | — | 2430 | 352 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YR6 | 34047 | 2023-08-09 | 2022-08-09 | 4.8 | 5.13 | 4.65 | 4.7 | 0.004 | 0.88 | 0.0 | 0.05 | 20.67 | 0.00 | 2.291 | 7.11 | 3.30 | 15.1 | 84.9 | 0.0 | -5.39 | 0.81 | 0.74 | — | 4.7 | 0.006 | 0.85 | 0.0 | 0.05 | 21.69 | 0.01 | 2.063 | 46.62 | 0.00 | 26.4 | 73.6 | 0.0 | -5.22 | 0.82 | 0.83 | 0.81 | — | 4248 | 220 | 5 | 118 | 0 | 0 | 0 | logfile |
✔ | 7M62 | 23687 | 2023-08-09 | 2021-03-25 | 3.9 | 3.91 | — | 4.3 | 0.007 | 1.13 | 0.0 | 0.07 | 14.83 | 0.00 | 2.321 | 32.83 | 0.00 | 23.3 | 76.7 | 0.0 | -4.97 | 0.55 | 0.62 | 2.27 | 4.2 | 0.006 | 1.03 | 0.0 | 0.06 | 15.73 | 0.00 | 2.059 | 31.10 | 2.22 | 26.0 | 74.0 | 0.0 | -4.94 | 2.76 | 0.57 | 0.68 | 2.84 | 2380 | 320 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 6RiB | 4887 | 2023-08-14 | 2019-04-23 | 4.2 | 3.32 | — | 4.0 | 0.008 | 1.12 | 0.0 | 0.06 | 18.48 | 0.00 | 0.563 | 15.47 | 9.09 | 10.1 | 89.9 | 0.0 | -5.68 | 0.73 | 0.66 | — | 3.9 | 0.010 | 1.18 | 0.0 | 0.06 | 14.53 | 0.01 | 2.111 | 35.36 | 0.00 | 25.6 | 74.4 | 0.0 | -5.41 | 1.66 | 0.78 | 0.74 | — | 16368 | 2222 | 22 | 0 | 0 | 0 | 0 | logfile |
✔ | 6B19 | 7031 | 2023-08-09 | 2017-09-18 | 4.5 | 4.61 | — | 4.4 | 0.023 | 1.38 | 0.0 | 0.05 | 6.45 | 0.01 | 2.201 | 16.18 | 0.00 | 19.4 | 80.5 | 0.1 | -5.73 | 0.74 | 0.63 | — | 4.4 | 0.003 | 0.84 | 0.0 | 0.04 | 12.73 | 0.00 | 1.937 | 28.68 | 0.00 | 25.4 | 74.6 | 0.0 | -4.85 | 1.32 | 0.78 | 0.68 | — | 5699 | 907 | 4 | 38 | 0 | 0 | 409 | logfile |