Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6GTD	0062	2023-02-17	2018-06-18	4.24	4.28	—	3.9	0.009	1.26	0.0	0.08	21.74	0.01	2.138	13.01	0.00	19.8	80.2	0.0	-5.72	0.78	0.65	—	3.8	0.005	0.83	0.0	0.05	20.33	0.00	2.025	16.75	0.00	19.3	80.7	0.0	-3.20	0.98	0.79	0.67	—	6456	1269	4	66	0	0	0	logfile
✔	6TNF	10531	2023-02-19	2019-12-07	3.8	2.90	3.67	2.7	0.032	1.64	0.0	0.32	19.07	0.01	2.236	8.40	0.00	17.8	81.5	0.7	-5.32	0.60	0.56	—	2.6	0.005	1.03	0.0	0.08	13.61	0.01	2.106	13.33	0.00	19.1	80.8	0.1	-3.46	0.54	0.65	0.64	—	9559	2206	5	0	66	0	0	logfile
✔	7U15	26278	2023-02-18	2022-02-19	3.0	3.14	—	3.3	0.006	1.18	0.0	0.12	17.37	0.01	1.886	12.16	3.44	3.8	96.2	0.0	-6.51	0.26	0.64	1.55	3.2	0.004	0.77	0.0	0.11	17.01	0.00	1.892	13.92	4.76	18.8	81.2	0.0	-5.30	1.49	0.28	0.71	2.28	6684	405	6	0	12	0	3255	logfile
✔	6CET	7465	2023-02-21	2018-02-12	4.4	4.41	—	4.3	0.007	1.42	0.0	0.07	13.40	0.01	2.251	8.50	0.96	19.7	80.1	0.2	-5.52	0.67	0.62	—	4.3	0.004	0.94	0.0	0.05	14.01	0.01	2.112	19.33	0.06	18.7	81.3	0.0	-3.78	1.59	0.68	0.63	—	14012	1741	3	0	0	0	0	logfile
✔	7MJQ	23882	2023-02-21	2021-04-20	4.2	4.29	—	4.2	0.009	1.55	0.0	0.15	8.06	0.01	1.552	6.01	0.00	9.4	90.6	0.0	-1.25	0.52	0.66	—	4.2	0.005	0.95	0.0	0.05	9.32	0.01	2.128	5.46	0.00	18.6	81.3	0.2	-3.11	1.84	0.60	0.76	—	14976	2982	13	0	10	0	0	logfile
✔	7WoP	32654	2023-02-17	2022-01-22	3.51	2.51	—	3.4	0.002	0.54	0.0	0.04	10.83	0.00	2.203	10.97	9.21	11.4	88.6	0.0	-4.81	0.64	0.66	1.96	3.4	0.005	0.85	0.0	0.05	14.87	0.01	2.063	24.57	0.72	18.5	81.5	0.0	-3.82	1.29	0.65	0.69	2.10	5107	669	3	0	0	0	0	logfile
✔	7N95	24250	2023-02-18	2021-06-16	4.1	3.45	—	2.1	0.002	0.74	0.0	0.00	5.05	0.00	2.573	0.10	0.00	7.1	92.3	0.6	-1.14	0.78	0.70	—	2.1	0.004	1.01	0.0	0.00	4.97	0.00	2.503	6.53	0.00	18.1	81.7	0.2	-3.27	1.81	0.85	0.83	—	7299	2433	2	0	0	0	0	logfile
✔	6HDD	0204	2023-02-26	2018-08-17	4.5	5.28	—	4.4	0.009	1.36	3.0	0.08	12.60	0.01	2.220	12.08	1.07	18.3	81.6	0.1	-6.11	0.74	0.42	—	8.0	0.005	1.06	7.0	0.06	13.43	0.01	1.446	33.80	0.00	17.6	81.8	0.6	-3.77	5.52	0.80	0.43	—	28154	3605	7	0	0	0	0	logfile
✔	6NYJ	0544	2023-02-27	2019-02-11	3.2	3.93	—	3.8	0.008	1.06	0.0	0.06	10.60	0.01	2.247	7.25	0.54	15.2	84.8	0.0	-5.28	0.82	0.77	3.30	3.8	0.007	0.80	0.0	0.05	12.81	0.00	2.204	15.43	0.38	18.1	81.9	0.0	-4.31	0.58	0.83	0.79	3.08	68664	9000	12	0	0	0	0	logfile
✔	7KXY	23067	2023-02-19	2020-12-05	4.4	4.55	4.44	4.5	0.004	0.82	0.0	0.05	15.13	0.01	2.197	19.28	7.18	26.0	69.8	4.2	-5.90	0.63	0.60	—	4.5	0.004	0.89	0.0	0.05	14.76	0.01	2.049	27.06	0.00	17.9	82.0	0.1	-5.00	0.62	0.64	0.62	—	9510	1181	2	0	0	0	0	logfile
✔	7JLX	22383	2023-02-17	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.003	0.75	0.0	0.04	7.17	0.00	2.306	8.03	0.00	17.7	82.3	0.0	-2.25	2.42	0.48	0.53	—	3288	664	4	0	0	0	0	logfile
✔	6L2T	0814	2023-02-21	2019-10-06	4.1	4.14	—	4.2	0.003	0.61	0.0	0.05	12.33	0.00	2.222	5.89	0.15	13.8	86.0	0.2	-5.72	0.61	0.76	—	4.2	0.005	0.77	0.0	0.05	12.54	0.01	2.083	8.68	0.00	17.6	82.3	0.1	-4.18	0.52	0.61	0.77	—	13604	1889	3	0	0	0	0	logfile
✔	6PiG	20350	2023-02-26	2019-06-26	3.5	3.54	3.59	3.5	0.014	1.75	1.0	0.09	16.07	0.00	2.173	1.98	1.58	15.2	81.4	3.5	-4.85	0.60	0.76	2.54	3.5	0.005	0.87	0.0	0.05	17.22	0.01	2.097	12.08	0.49	17.1	82.3	0.6	-3.03	0.58	0.66	0.80	2.35	28867	3439	11	60	0	0	0	logfile
✔	6ND4	0441	2023-02-24	2018-12-13	4.3	4.41	—	4.2	0.010	1.03	0.0	0.06	14.55	0.02	2.230	5.19	0.00	6.4	93.6	0.1	-3.63	0.80	0.66	—	4.2	0.007	1.08	0.0	0.05	15.04	0.01	1.926	19.87	0.00	17.6	82.3	0.1	-3.59	1.14	0.85	0.77	—	63993	9225	30	551	1306	0	0	logfile
✔	6RTB	4996	2023-02-17	2019-05-22	3.46	3.57	—	3.5	0.009	1.23	0.0	0.07	15.08	0.01	2.122	6.27	2.61	18.9	80.9	0.2	-4.64	0.62	0.79	4.22	3.5	0.004	0.76	0.0	0.05	15.59	0.00	2.167	12.95	1.53	17.5	82.5	0.0	-4.08	0.60	0.62	0.80	3.79	4681	699	10	0	0	0	0	logfile
✔	6RT0	4994	2023-02-17	2019-05-22	3.1	3.18	—	3.1	0.006	0.97	0.0	0.06	14.23	0.00	2.415	2.11	1.06	11.5	88.5	0.0	-3.76	0.71	0.84	6.51	3.1	0.009	0.89	0.0	0.06	16.41	0.00	2.255	5.41	0.43	17.4	82.6	0.0	-4.13	0.82	0.72	0.86	5.76	4925	735	10	0	0	0	0	logfile
✔	6Z7Q	11112	2023-02-22	2020-06-01	3.8	4.10	3.58	4.0	0.006	0.77	0.0	0.05	14.47	0.00	2.176	21.13	0.00	28.6	70.7	0.7	-6.49	0.73	0.82	1.75	4.0	0.005	0.92	0.0	0.05	16.92	0.00	2.170	21.04	0.91	17.3	82.6	0.0	-4.35	1.20	0.75	0.83	1.27	16665	2080	5	0	0	0	0	logfile
✔	6oRQ	20178	2023-02-23	2019-04-30	4.4	4.71	4.38	4.5	0.007	1.26	0.0	0.07	12.59	0.01	2.039	6.79	1.04	16.3	83.4	0.3	-4.97	0.65	0.83	—	4.5	0.006	0.92	0.0	0.05	13.11	0.01	2.071	21.62	0.28	17.4	82.6	0.0	-3.82	1.59	0.65	0.84	—	20176	2430	40	0	83	0	0	logfile
✔	7ZCF	14629	2023-02-17	2022-03-28	4.0	4.23	3.97	4.2	0.003	0.65	0.0	0.04	14.10	0.00	2.089	10.15	0.56	14.8	85.2	0.0	-2.45	0.67	0.71	—	4.2	0.003	0.73	0.0	0.04	15.97	0.00	2.100	12.61	0.00	17.4	82.6	0.0	-2.81	0.56	0.69	0.76	—	3312	426	3	0	1	0	0	logfile
✔	5o4U	3746	2023-02-25	2017-05-31	4.2	4.27	4.23	4.3	0.007	1.26	2.0	0.08	11.28	0.01	0.586	15.82	1.75	17.3	82.7	0.0	-4.67	0.39	0.70	—	4.2	0.004	0.85	0.0	0.06	12.52	0.01	2.119	19.27	0.04	17.3	82.7	0.0	-3.04	1.34	0.45	0.76	—	24528	3312	16	0	0	0	0	logfile

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