Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7K3A	22654	2023-02-23	2020-09-10	4.2	4.49	—	4.2	0.004	0.73	0.0	0.05	12.62	0.00	2.053	12.86	0.17	5.1	94.9	0.0	-0.62	0.85	0.73	—	4.2	0.003	0.68	0.0	0.05	12.67	0.00	2.099	16.25	0.00	4.8	95.2	0.0	-0.52	2.08	0.91	0.83	—	21426	2691	27	0	54	0	0	logfile
✔	7PEY	13361	2023-02-21	2021-08-11	4.5	5.20	—	3.8	0.006	0.90	0.0	0.05	29.92	0.01	2.177	7.49	0.00	1.6	98.4	0.0	-0.09	0.89	0.84	—	3.8	0.005	0.68	0.0	0.04	29.92	0.00	2.127	22.29	0.00	3.1	96.9	0.0	1.41	1.31	0.89	0.85	—	13099	768	10	342	0	0	0	logfile
✔	6DZM	8936	2023-02-21	2018-07-05	4.29	4.66	—	4.3	0.008	0.91	0.0	0.05	9.66	0.01	2.058	8.59	0.00	13.6	86.4	0.0	-4.76	0.77	0.80	—	4.3	0.003	0.72	0.0	0.05	11.96	0.00	2.177	14.86	0.00	9.9	90.1	0.0	-1.81	0.96	0.79	0.83	—	13584	1695	24	0	27	0	0	logfile
✔	7M61	23686	2023-02-16	2021-03-25	3.8	3.83	—	4.1	0.005	1.01	0.0	0.08	12.79	0.00	2.218	22.02	0.00	14.3	85.7	0.0	-4.63	0.49	0.73	2.45	3.9	0.004	0.80	0.0	0.05	14.85	0.00	2.106	21.09	0.00	14.3	85.7	0.0	-4.66	0.84	0.48	0.75	2.97	1690	230	10	0	10	0	0	logfile
✔	8EXQ	28659	2023-02-19	2022-10-25	4.9	5.40	5.55	6.0	0.020	1.74	0.0	0.10	10.28	0.01	2.002	1.81	0.00	2.5	97.3	0.2	0.34	0.52	0.45	—	6.0	0.003	0.74	0.0	0.04	12.89	0.00	2.068	17.98	0.00	5.3	94.5	0.2	-0.50	2.54	0.58	0.63	—	9304	1108	4	0	2	0	0	logfile
✔	6PVL	20492	2023-02-23	2019-07-21	4.4	4.48	—	4.4	0.008	1.13	0.0	0.06	11.67	0.01	2.202	6.80	1.39	15.4	84.2	0.5	-5.53	0.69	0.81	—	4.4	0.004	0.85	0.0	0.04	13.22	0.00	2.071	16.18	0.00	12.8	87.0	0.2	-1.56	1.50	0.70	0.82	—	21006	2576	5	0	2	0	0	logfile
✔	7AWA	11928	2023-02-17	2020-11-06	3.5	3.83	—	3.6	0.003	0.64	0.0	0.04	14.22	0.00	2.126	6.77	0.00	5.8	94.2	0.0	-2.52	0.57	0.81	2.14	3.7	0.002	0.52	0.0	0.04	15.06	0.00	2.163	6.96	0.00	3.7	96.3	0.0	-0.59	1.17	0.54	0.80	1.51	5310	328	1	0	0	0	2703	logfile
✔	7MR1	23953	2023-02-22	2021-05-07	4.2	4.74	—	4.6	0.003	0.78	0.0	0.05	14.91	0.01	2.237	5.72	0.00	5.5	94.5	0.0	-1.78	0.85	0.84	—	4.6	0.004	0.68	0.0	0.04	14.81	0.00	2.159	12.60	0.00	7.5	92.4	0.0	-0.59	0.33	0.85	0.84	—	18473	2316	3	0	0	0	0	logfile
✔	7D43	30568	2023-02-27	2020-09-22	4.3	4.40	—	4.3	0.006	0.99	0.0	0.05	14.62	0.01	2.018	28.45	0.31	18.3	81.6	0.1	-6.11	0.83	0.79	—	4.3	0.005	0.79	0.0	0.05	13.78	0.00	2.083	20.44	0.00	12.6	87.3	0.0	-2.75	1.57	0.83	0.78	—	31009	4347	14	0	0	0	0	logfile
✔	7EoQ	31227	2023-02-25	2021-04-22	4.1	4.43	—	4.1	0.002	0.46	0.0	0.04	10.21	0.00	2.195	7.68	2.14	4.7	95.3	0.0	0.09	0.86	0.74	—	4.1	0.002	0.59	0.0	0.04	11.26	0.00	2.196	13.19	0.00	6.8	93.2	0.0	-0.65	1.22	0.89	0.79	—	24742	3144	8	0	10	0	0	logfile
✔	8ATF	15647	2023-02-21	2022-08-23	3.45	3.54	3.42	3.5	0.013	1.99	4.0	0.11	24.98	0.03	2.090	4.15	1.81	3.1	96.2	0.7	-2.09	0.71	0.80	2.97	3.5	0.003	0.58	0.0	0.03	25.88	0.00	2.235	6.93	0.00	1.8	98.2	0.0	1.86	2.25	0.78	0.85	1.65	15719	1219	13	286	1	0	0	logfile
✔	7WBL	32405	2023-02-20	2021-12-17	3.4	3.46	—	3.5	0.004	0.58	0.0	0.04	15.30	0.00	2.158	6.95	0.72	3.6	96.1	0.4	0.52	0.67	0.77	2.33	3.5	0.002	0.54	0.0	0.04	16.74	0.00	2.193	6.00	0.00	2.9	97.0	0.1	1.12	0.32	0.67	0.79	1.43	6484	791	3	0	5	0	0	logfile
✔	7PDD	13334	2023-02-17	2021-08-05	4.2	4.47	—	4.3	0.004	0.75	0.0	0.04	14.38	0.00	2.092	20.92	0.00	7.1	92.9	0.0	-4.11	0.79	0.75	—	4.3	0.003	0.79	0.0	0.05	14.04	0.00	2.224	17.90	0.00	5.3	94.7	0.0	-1.20	0.90	0.78	0.72	—	4516	577	2	0	0	0	0	logfile
✔	6B3o	7040	2023-02-18	2017-09-22	4.1	4.04	—	4.1	0.024	1.82	0.0	0.11	10.99	0.01	2.285	2.28	0.34	2.1	97.6	0.3	1.14	0.69	0.76	—	4.0	0.005	0.75	0.0	0.04	14.24	0.00	2.119	10.89	0.00	4.7	95.0	0.3	0.76	1.67	0.71	0.77	—	7980	1032	3	0	0	0	0	logfile
✔	7EoU	31231	2023-02-25	2021-04-22	4.3	4.50	—	4.2	0.002	0.43	0.0	0.04	8.92	0.00	2.243	9.12	1.92	3.9	96.0	0.1	0.78	0.86	0.73	—	4.2	0.002	0.60	0.0	0.04	11.17	0.00	2.074	13.71	0.00	5.3	94.6	0.1	-0.18	1.64	0.89	0.79	—	24593	3084	8	0	19	0	0	logfile
✔	6DVZ	8921	2023-02-23	2018-06-25	4.24	4.48	—	4.4	0.008	1.27	0.0	0.06	12.54	0.01	2.265	5.74	0.18	16.6	82.6	0.8	-5.86	0.70	0.80	—	4.4	0.003	0.81	0.0	0.04	13.96	0.00	1.621	12.77	0.00	13.5	86.1	0.4	-2.24	0.88	0.70	0.80	—	20976	2572	8	0	12	0	0	logfile
✔	7NBX	12262	2023-02-24	2021-01-28	4.8	5.30	4.72	4.9	0.008	1.04	0.0	0.05	15.90	0.01	1.950	12.59	0.00	12.3	87.6	0.1	-4.49	0.76	0.82	—	4.9	0.004	0.64	0.0	0.04	14.15	0.00	1.865	13.21	0.00	9.7	90.3	0.0	-2.01	0.71	0.76	0.81	—	22637	1475	5	0	0	0	11129	logfile
✔	7WTH	32786	2023-02-17	2022-02-04	4.3	3.63	—	4.0	0.004	0.78	0.0	0.05	12.97	0.01	2.169	9.08	0.85	8.0	92.0	0.0	-2.03	0.69	0.70	—	3.8	0.004	0.77	0.0	0.05	13.51	0.00	2.154	11.58	0.00	10.6	89.2	0.2	-2.44	1.20	0.69	0.72	—	3257	421	3	0	0	0	0	logfile
✔	7DTW	30856	2023-02-19	2021-01-06	4.5	4.74	—	3.6	0.007	0.99	0.0	0.06	13.61	0.01	2.267	9.20	0.00	10.3	89.7	0.0	-4.26	0.71	0.78	—	3.7	0.002	0.59	0.0	0.04	12.46	0.00	2.203	8.26	0.00	8.6	91.4	0.0	-1.11	0.54	0.71	0.79	—	10250	1556	8	0	14	0	0	logfile
✔	7ZiR	14738	2023-02-16	2022-04-08	2.5	2.51	2.04	2.7	0.002	0.34	0.0	0.03	9.02	0.00	2.317	1.65	0.00	2.0	98.0	0.0	-3.82	0.48	0.90	7.46	2.7	0.003	0.46	0.0	0.04	12.12	0.00	2.316	0.28	0.00	2.9	97.1	0.0	-3.83	1.03	0.50	0.93	7.96	2120	255	10	0	0	50	0	logfile

• ← previous
• Page 4 of 353
• next →