Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7BZX	30262	2022-04-04	2020-04-28	4.0	4.19	—	3.2	0.019	2.22	9.0	0.12	8.56	0.01	2.485	2.40	0.00	6.6	92.1	1.3	-2.90	0.47	0.25	—	2.9	0.004	1.07	0.0	0.05	8.41	0.00	2.068	18.09	0.00	18.4	81.5	0.1	-5.13	3.15	0.75	0.57	—	5652	1154	2	0	0	0	0	logfile
✔	7E8H	31019	2022-04-09	2021-03-01	4.5	4.06	4.44	3.7	0.002	0.62	0.0	0.04	14.21	0.00	2.089	18.22	0.00	6.9	93.0	0.1	-0.78	0.73	0.62	—	3.7	0.004	0.70	0.0	0.05	14.37	0.00	2.089	24.89	0.00	8.6	91.3	0.1	-1.32	0.46	0.78	0.73	—	44894	5576	12	0	0	0	0	logfile
✔	7PLA	13486	2022-04-04	2021-08-30	3.04	4.14	—	3.1	0.008	1.08	0.0	0.09	21.82	0.00	2.216	9.66	0.26	3.3	96.7	0.0	-0.03	0.74	0.61	1.97	3.1	0.004	0.64	0.0	0.04	19.93	0.00	2.147	15.64	0.00	4.0	96.0	0.0	0.22	0.87	0.84	0.81	1.74	8701	437	4	244	0	0	0	logfile
✔	7RZ6	24752	2022-04-07	2021-08-27	4.4	4.29	—	4.5	0.005	0.93	0.0	0.05	10.68	0.01	2.217	4.67	0.46	4.6	95.4	0.0	-4.26	0.54	0.48	—	4.2	0.003	0.71	0.0	0.04	12.93	0.00	2.075	14.45	0.00	3.8	96.2	0.0	-0.72	1.60	0.64	0.76	—	27922	3538	8	0	2	0	0	logfile
✔	7oHT	12908	2022-04-08	2021-05-11	4.7	6.83	4.99	3.5	0.002	0.48	0.0	0.04	17.51	0.00	1.855	6.82	1.28	5.3	94.6	0.1	0.83	0.81	0.61	—	3.3	0.003	0.58	0.0	0.03	17.81	0.00	1.807	19.44	0.00	8.9	90.9	0.1	-0.79	1.73	0.86	0.78	—	135365	5154	30	1618	3	0	59714	logfile
✔	7PMW	13542	2022-04-05	2021-09-03	4.1	4.24	4.05	4.1	0.002	0.47	1.0	0.04	9.25	0.00	2.047	8.47	0.91	2.8	97.2	0.0	0.56	0.58	0.75	—	4.1	0.003	0.55	0.0	0.04	11.56	0.00	2.047	10.15	0.00	3.2	96.8	0.0	0.68	1.20	0.58	0.75	—	10153	643	2	0	0	0	5123	logfile
✔	7RPo	24618	2022-04-05	2021-08-03	4.16	2.77	—	1.8	0.003	0.50	0.0	0.04	16.86	0.00	1.759	6.97	1.64	8.5	91.5	0.0	-2.01	0.74	0.71	—	1.8	0.005	0.77	0.0	0.05	18.51	0.01	1.983	13.27	0.00	11.0	89.0	0.0	-2.17	1.73	0.75	0.71	—	10602	1179	9	62	5	0	0	logfile
✔	7M7G	23712	2022-04-07	2021-03-28	4.1	4.36	—	4.2	0.012	1.67	59.0	0.10	19.69	0.01	1.751	14.92	18.86	9.1	90.9	0.0	-4.21	0.69	0.51	—	4.2	0.004	0.77	0.0	0.04	13.61	0.01	2.017	22.10	0.00	6.8	93.2	0.1	-1.52	1.56	0.82	0.76	—	26480	3557	6	0	0	0	0	logfile
✔	7RTN	24684	2022-04-04	2021-08-13	3.4	3.47	—	3.5	0.004	0.63	0.0	0.04	14.58	0.00	2.298	6.03	0.00	6.1	93.9	0.0	0.60	0.31	0.74	3.40	3.5	0.002	0.56	0.0	0.04	16.51	0.00	2.269	7.42	0.00	4.3	95.7	0.0	1.39	0.36	0.31	0.78	2.76	6018	810	3	0	0	0	0	logfile
✔	7MUQ	24018	2022-04-14	2021-05-14	4.6	4.79	—	4.6	0.006	0.81	0.0	0.05	16.18	0.01	2.222	9.56	14.94	6.1	93.9	0.0	-1.46	0.74	0.85	—	4.6	0.005	0.74	0.0	0.05	13.28	0.00	2.031	19.16	0.00	7.0	93.0	0.0	-1.03	0.70	0.74	0.86	—	192370	24140	205	0	981	0	0	logfile
✔	7NJW	12425	2022-04-05	2021-02-17	3.67	3.61	—	3.8	0.003	0.50	0.0	0.04	14.13	0.00	2.178	7.79	0.00	3.2	96.8	0.0	2.21	0.62	0.82	1.69	3.8	0.004	0.53	0.0	0.04	15.38	0.00	2.160	8.04	0.00	2.3	97.7	0.0	4.21	0.40	0.62	0.82	1.89	16426	1118	12	0	0	0	8337	logfile
✔	7PHG	13415	2022-04-04	2021-08-17	4.3	4.13	—	4.0	0.003	0.68	0.0	0.04	13.71	0.00	1.916	18.40	0.00	11.9	88.1	0.0	-3.68	0.78	0.67	—	4.0	0.003	0.65	0.0	0.04	13.66	0.00	1.966	17.62	0.00	10.7	89.3	0.0	-3.58	1.26	0.77	0.65	—	6469	427	3	0	0	0	3160	logfile
✔	7S0E	24788	2022-04-04	2021-08-30	4.9	4.98	—	4.8	0.004	0.87	0.0	0.05	13.44	0.01	1.886	21.60	1.22	8.1	91.3	0.7	-1.76	0.77	0.67	—	4.8	0.003	0.74	0.0	0.05	12.86	0.01	2.143	17.43	0.00	8.4	91.4	0.2	-1.69	1.17	0.78	0.72	—	8248	1076	3	0	0	0	0	logfile
✔	7P4i	13193	2022-04-04	2021-07-11	4.2	5.62	—	4.1	0.003	0.76	0.0	0.04	13.10	0.00	2.168	11.73	0.00	5.7	94.3	0.0	-0.54	0.61	0.84	—	4.2	0.003	0.71	0.0	0.04	13.53	0.00	2.244	10.50	0.00	5.6	94.4	0.0	0.63	0.92	0.61	0.86	—	9510	1284	3	0	0	0	0	logfile
✔	7EY6	31321	2022-04-09	2021-05-30	4.3	4.22	—	4.2	0.009	1.56	60.0	0.11	18.03	0.01	2.089	21.01	16.41	6.0	93.8	0.2	-0.70	0.53	0.72	—	4.2	0.004	0.75	0.0	0.04	14.28	0.00	2.158	14.21	0.00	5.3	94.7	0.0	-0.43	1.66	0.53	0.73	—	44028	5628	12	0	0	0	0	logfile
✔	7NKK	12442	2022-04-05	2021-02-18	3.6	3.81	—	3.5	0.003	0.51	0.0	0.04	13.87	0.00	2.157	11.16	0.00	3.3	96.7	0.0	1.95	0.75	0.80	1.78	3.5	0.003	0.54	0.0	0.04	15.15	0.00	2.027	11.40	0.00	2.0	98.0	0.0	3.47	0.91	0.75	0.80	1.84	16671	1143	12	0	0	0	8376	logfile
✔	7NJU	12423	2022-04-05	2021-02-17	3.74	3.93	—	3.8	0.003	0.47	0.0	0.04	14.41	0.00	2.064	6.27	0.00	4.0	96.0	0.0	2.44	0.63	0.83	1.57	3.8	0.003	0.49	0.0	0.04	15.41	0.00	2.105	7.00	0.00	2.0	98.0	0.0	4.84	0.33	0.64	0.83	1.26	16438	1119	12	0	0	0	8341	logfile
✔	7MUV	24023	2022-04-14	2021-05-14	4.6	4.89	—	4.6	0.003	0.56	0.0	0.04	13.22	0.00	2.117	15.78	8.26	5.4	94.6	0.0	-0.13	0.74	0.84	—	4.6	0.004	0.66	0.0	0.04	12.36	0.00	2.012	19.42	0.00	5.9	94.1	0.0	-0.66	0.64	0.74	0.85	—	192370	24140	205	0	981	0	0	logfile
✔	7MoC	23924	2022-04-05	2021-05-01	4.56	3.76	4.47	3.7	0.012	1.82	17.0	0.11	13.17	0.02	2.211	1.99	0.19	1.7	98.3	0.0	-0.04	0.58	0.68	—	3.7	0.004	0.76	0.0	0.04	14.33	0.00	2.125	20.72	0.00	2.2	97.8	0.0	1.63	1.62	0.58	0.70	—	13883	1755	2	0	0	0	0	logfile
✔	7Q9P	13875	2022-04-07	2021-11-12	4.5	5.25	—	4.6	0.004	0.63	2.0	0.04	10.50	0.00	1.893	9.35	1.20	5.0	94.6	0.4	-0.75	0.81	0.66	—	4.7	0.005	0.70	0.0	0.04	11.71	0.00	2.033	21.75	0.00	6.0	93.8	0.2	-0.89	1.57	0.84	0.74	—	30494	3807	24	0	52	0	0	logfile

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