Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6UZ2	20950	2023-09-28	2019-11-14	4.2	4.39	—	4.3	0.009	1.13	0.0	0.05	13.78	0.01	2.197	31.10	2.00	15.5	84.3	0.2	-5.29	0.69	0.78	—	4.3	0.003	0.79	0.0	0.04	12.08	0.00	2.189	14.57	0.00	5.1	94.8	0.1	0.03	0.97	0.67	0.76	—	7392	1140	2	0	0	0	0	logfile
✔	7MSW	23970	2023-09-29	2021-05-12	3.76	3.93	3.60	3.8	0.009	0.66	0.0	0.05	10.62	0.00	1.933	0.81	0.00	2.5	97.3	0.2	-0.01	0.79	0.80	1.87	3.8	0.003	0.56	0.0	0.04	14.04	0.00	2.077	6.38	0.00	3.2	96.8	0.0	0.24	1.00	0.78	0.81	1.50	9881	635	1	0	3	0	4959	logfile
✔	7Q4C	13801	2023-09-29	2021-10-30	4.08	4.49	4.12	4.4	0.007	0.92	0.0	0.05	13.82	0.01	2.077	6.86	0.00	3.3	96.7	0.0	-1.44	0.71	0.75	—	4.4	0.003	0.61	0.0	0.04	14.94	0.00	2.022	8.73	0.00	2.6	97.4	0.0	1.68	0.92	0.69	0.74	—	9503	585	5	0	11	0	4598	logfile
✔	7LZE	23605	2023-09-28	2021-03-09	3.23	3.26	3.28	3.6	0.003	0.45	0.0	0.04	13.89	0.00	2.222	3.40	0.11	8.4	91.6	0.0	-0.70	0.76	0.82	3.47	3.5	0.004	0.58	0.0	0.04	14.97	0.00	2.153	3.27	0.00	7.7	92.3	0.0	-0.99	1.12	0.77	0.85	2.67	7842	1011	9	0	9	0	0	logfile
✔	6WB0	21583	2023-09-29	2020-03-26	4.2	4.26	—	4.2	0.002	0.51	0.0	0.04	11.69	0.00	2.131	11.89	0.81	4.1	95.9	0.0	-4.46	0.79	0.74	—	4.1	0.002	0.60	0.0	0.04	12.52	0.00	2.146	8.81	0.00	3.3	96.7	0.0	-1.45	1.29	0.81	0.78	—	8518	948	4	77	0	0	0	logfile
✔	7o6P	12739	2023-09-28	2021-04-12	2.04	2.55	—	2.1	0.008	0.59	0.0	0.05	11.73	0.00	2.140	6.08	0.93	1.8	98.2	0.0	-0.54	0.90	0.88	5.90	2.1	0.002	0.47	0.0	0.04	13.52	0.00	2.251	5.96	0.00	2.0	98.0	0.0	2.22	0.39	0.90	0.92	5.36	8276	1022	8	0	0	268	0	logfile
✔	6CoZ	7545	2023-09-27	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.003	0.85	0.0	0.04	5.41	0.00	2.334	6.19	0.00	9.6	90.4	0.0	-1.73	1.59	0.82	0.77	—	1586	320	2	0	0	0	0	logfile
✔	6NTS	0510	2023-09-30	2019-01-30	3.63	4.31	2.98	3.6	0.016	0.51	0.0	0.03	13.23	0.00	1.917	2.06	0.00	3.8	96.2	0.0	-2.08	0.89	0.77	0.59	3.6	0.002	0.62	0.0	0.04	15.01	0.00	2.074	8.23	0.00	2.2	97.8	0.0	0.88	2.31	0.92	0.85	1.06	9956	1240	5	0	3	0	0	logfile
✔	7WFW	32476	2023-09-29	2021-12-27	3.1	3.45	—	3.4	0.013	1.39	1.0	0.07	18.80	0.01	2.192	21.71	0.11	8.4	91.5	0.1	-2.32	0.59	0.72	1.88	3.4	0.003	0.67	0.0	0.04	17.52	0.00	2.124	11.36	0.00	3.9	96.1	0.0	0.50	0.45	0.55	0.73	1.18	8689	998	3	0	23	0	0	logfile
✔	7XD4	33135	2023-09-29	2022-03-26	3.89	4.13	—	3.8	0.003	0.59	0.0	0.03	15.73	0.00	1.880	1.73	0.00	0.0	0.0	0.0	—	0.85	0.73	—	3.8	0.007	0.78	0.0	0.04	17.52	0.01	1.755	18.36	0.00	0.0	0.0	0.0	—	1.84	0.87	0.78	—	9062	0	1	423	28	0	0	logfile
✔	5oYG	3861	2023-09-30	2017-09-08	4.06	4.29	4.02	4.1	0.007	1.27	10.0	0.10	12.53	0.01	2.282	5.95	1.98	6.9	93.1	0.0	-3.35	0.68	0.83	—	4.1	0.004	0.73	0.0	0.04	12.60	0.00	2.130	11.47	0.00	6.0	94.0	0.0	0.56	0.84	0.68	0.82	—	11596	1418	2	0	0	0	0	logfile
✔	6XLK	22246	2023-09-28	2020-06-28	3.3	3.63	—	3.5	0.008	0.76	0.0	0.05	20.17	0.00	2.216	5.71	0.41	0.9	99.1	0.0	-2.26	0.78	0.84	2.91	3.5	0.003	0.55	0.0	0.04	20.50	0.00	2.259	8.09	0.00	1.5	98.5	0.0	0.61	0.44	0.79	0.85	2.26	5456	536	6	46	4	0	0	logfile
✔	7WPZ	32693	2023-09-28	2022-01-24	3.8	3.48	—	3.6	0.013	1.41	1.0	0.11	9.57	0.01	2.431	1.73	0.74	2.2	97.4	0.4	-0.13	0.75	0.74	2.80	3.6	0.002	0.56	0.0	0.04	13.59	0.00	2.222	4.23	0.00	2.2	97.8	0.0	1.68	1.38	0.78	0.79	2.18	5756	787	8	0	15	0	0	logfile
✔	7WSo	32762	2023-09-28	2022-01-30	3.03	3.25	—	3.3	0.014	1.29	0.0	0.07	10.67	0.01	2.351	3.25	0.85	8.7	91.3	0.0	-2.93	0.63	0.81	3.97	3.2	0.004	0.65	0.0	0.04	14.22	0.00	2.324	4.31	0.00	3.6	96.4	0.0	-0.35	1.27	0.66	0.84	3.03	6204	780	4	0	0	0	0	logfile
✔	7KTT	23029	2023-09-28	2020-11-24	4.17	4.46	—	4.2	0.007	1.04	0.0	0.06	13.23	0.01	2.239	12.66	0.25	5.7	94.3	0.0	-5.41	0.81	0.78	—	4.2	0.003	0.73	0.0	0.04	13.82	0.00	2.116	20.56	0.00	3.3	96.7	0.0	0.00	0.67	0.81	0.76	—	7568	994	1	0	0	0	0	logfile
✔	5LMV	4083	2023-09-29	2016-08-01	4.9	6.86	6.64	6.7	0.008	1.34	34.0	0.11	20.14	0.01	0.977	14.22	15.18	9.6	87.9	2.5	-1.98	0.70	0.58	—	6.7	0.003	0.72	0.0	0.04	16.73	0.01	2.048	27.68	0.00	6.8	92.7	0.5	-1.55	2.19	0.77	0.75	—	59470	3124	30	1612	4	0	0	logfile
✔	7RHY	24471	2023-09-28	2021-07-19	3.91	4.12	4.00	4.0	0.005	0.80	0.0	0.05	21.78	0.01	2.404	3.31	0.80	2.0	98.0	0.0	-1.06	0.74	0.76	2.28	4.0	0.003	0.61	0.0	0.04	23.22	0.00	2.372	5.36	0.00	2.7	97.3	0.0	1.48	0.89	0.74	0.77	1.86	6350	301	2	49	0	0	2957	logfile
✔	7EW3	31346	2023-09-29	2021-05-24	3.1	3.34	—	3.4	0.004	0.50	0.0	0.04	14.39	0.00	2.274	4.63	0.00	1.4	98.6	0.0	1.36	0.66	0.77	2.23	3.4	0.003	0.55	0.0	0.04	15.66	0.00	2.069	4.79	0.00	2.7	97.3	0.0	1.13	1.36	0.65	0.79	2.87	9072	1149	6	0	5	0	0	logfile
✔	6oR5	9032	2023-09-30	2019-04-29	4.0	4.23	—	3.9	0.008	1.12	0.0	0.05	10.85	0.00	2.245	4.84	0.00	17.3	82.4	0.3	-5.53	0.76	0.79	—	3.9	0.003	0.62	0.0	0.04	7.85	0.00	2.192	4.64	0.00	15.8	84.2	0.0	-1.38	1.34	0.78	0.80	—	10364	2058	1	0	5	0	0	logfile
✔	8E3S	27871	2023-09-27	2022-08-17	3.1	4.11	3.27	3.9	0.003	0.59	0.0	0.04	13.23	0.00	2.185	10.30	0.00	3.6	96.4	0.0	0.13	0.79	0.75	2.95	3.9	0.003	0.62	0.0	0.04	15.08	0.00	2.182	10.67	0.00	3.8	96.2	0.0	0.07	1.00	0.78	0.75	2.41	4072	503	1	0	1	0	0	logfile

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