Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RYQ	24745	2022-11-29	2021-08-25	4.6	6.00	4.65	4.8	0.005	1.08	0.0	0.06	15.48	0.01	1.251	39.37	6.25	10.7	88.9	0.4	-1.51	0.85	0.76	—	4.8	0.003	0.77	0.0	0.04	14.07	0.00	2.218	15.93	0.00	6.6	93.4	0.0	-0.30	1.23	0.85	0.77	—	4332	527	1	0	0	0	0	logfile
✔	7Y14	33556	2022-11-29	2022-06-06	3.2	3.29	3.09	3.3	0.004	0.66	1.0	0.04	13.60	0.01	2.312	8.75	0.00	4.2	95.8	0.0	2.46	0.51	0.76	2.28	3.3	0.003	0.56	1.0	0.04	15.41	0.00	2.281	8.75	0.00	5.0	95.0	0.0	2.69	1.20	0.52	0.78	1.95	2145	265	1	0	4	0	0	logfile
✔	7RSQ	24677	2022-11-29	2021-08-11	3.8	4.03	3.73	4.1	0.008	0.80	0.0	0.05	12.74	0.00	2.360	4.01	2.88	3.0	97.0	0.0	-0.64	0.63	0.68	1.39	4.2	0.002	0.51	0.0	0.03	15.35	0.00	2.389	2.76	0.00	2.6	97.4	0.0	2.59	1.83	0.63	0.70	1.77	3970	246	1	0	0	0	1958	logfile
✔	7DA4	30622	2022-11-29	2020-10-14	4.24	3.75	—	4.2	0.010	1.54	0.0	0.08	17.16	0.01	2.245	79.80	0.00	50.0	50.0	0.0	-8.65	0.39	0.66	—	4.3	0.004	0.95	0.0	0.04	11.56	0.00	2.266	19.19	0.00	18.3	81.7	0.0	-5.96	3.11	0.36	0.58	—	507	66	3	0	0	0	0	logfile
✔	7B6E	12053	2022-11-29	2020-12-07	4.5	2.79	—	5.1	0.005	1.03	0.0	0.05	15.04	0.01	2.129	36.28	0.00	10.9	89.1	0.0	-3.88	0.62	0.66	—	4.9	0.003	0.98	0.0	0.05	14.71	0.00	2.119	24.18	0.00	10.9	89.1	0.0	-1.33	0.86	0.61	0.66	—	2205	269	1	0	0	0	0	logfile
✔	7QL3	14062	2022-11-29	2021-12-19	3.32	3.47	3.01	3.5	0.011	2.01	8.0	0.11	12.27	0.01	2.489	0.00	0.00	7.7	92.3	0.0	-3.47	0.46	0.82	4.29	3.5	0.005	0.84	0.0	0.05	13.70	0.01	2.098	6.50	0.00	4.3	95.7	0.0	-2.94	1.15	0.43	0.84	4.76	3246	426	6	0	0	0	0	logfile
✔	7M62	23687	2022-11-29	2021-03-25	3.9	3.91	—	4.3	0.007	1.13	0.0	0.07	14.83	0.00	2.321	32.83	0.00	23.3	76.7	0.0	-4.97	0.55	0.62	2.27	4.3	0.003	0.99	0.0	0.05	15.87	0.00	2.105	21.17	0.00	22.7	77.3	0.0	-4.56	2.11	0.57	0.65	3.17	2380	320	10	0	10	0	0	logfile
✔	7M65	23689	2022-11-29	2021-03-25	4.1	4.11	—	4.3	0.009	1.40	0.0	0.10	12.05	0.00	2.392	33.63	0.00	17.6	82.4	0.0	-6.09	0.52	0.73	—	4.2	0.005	0.96	0.0	0.05	12.00	0.00	2.126	25.73	0.00	17.3	82.7	0.0	-6.33	4.44	0.52	0.73	—	2025	275	10	0	5	0	0	logfile
✔	7M64	23688	2022-11-29	2021-03-25	4.0	4.02	—	4.3	0.008	1.15	0.0	0.07	10.07	0.00	2.451	19.77	0.00	8.7	91.3	0.0	-3.84	0.52	0.75	—	4.3	0.003	0.90	0.0	0.04	11.30	0.00	2.242	6.78	0.00	5.2	94.8	0.0	-4.00	1.14	0.51	0.74	—	1850	250	10	0	10	0	0	logfile
✔	7JLX	22383	2022-11-29	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.004	0.84	0.0	0.04	7.94	0.00	2.314	8.45	0.00	18.9	81.1	0.0	-3.03	2.40	0.47	0.53	—	3288	664	4	0	0	0	0	logfile
✔	7RTV	24690	2022-11-29	2021-08-15	3.96	4.06	—	4.1	0.003	0.68	0.0	0.04	16.49	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.004	0.87	0.0	0.04	18.39	0.00	2.192	15.77	0.00	2.5	97.5	0.0	3.10	0.49	0.42	0.64	-0.08	2881	366	3	0	6	0	0	logfile
✔	7US9	26729	2022-11-29	2022-04-23	3.8	3.84	3.64	3.9	0.014	1.55	0.0	0.11	7.45	0.01	2.489	3.94	0.00	2.3	97.7	0.0	1.07	0.59	0.74	4.43	3.8	0.003	0.65	0.0	0.07	12.21	0.01	2.268	7.40	0.00	3.1	96.9	0.0	-0.01	1.47	0.61	0.77	3.67	1127	145	3	0	4	0	0	logfile
✔	7QKZ	14058	2022-11-29	2021-12-19	2.65	2.79	2.28	3.2	0.013	2.86	9.0	0.34	18.75	0.02	2.498	0.59	0.00	9.9	90.1	0.0	-1.61	0.34	0.61	7.02	2.7	0.006	1.50	0.0	0.38	19.57	0.01	2.238	12.41	0.00	1.2	98.8	0.0	-0.68	5.09	0.34	0.64	6.83	1701	99	9	0	0	0	891	logfile
✔	7WSN	32761	2022-11-29	2022-01-30	3.31	3.62	—	3.6	0.012	1.46	0.0	0.05	16.29	0.01	2.248	12.89	1.08	5.6	94.4	0.0	-0.44	0.51	0.78	1.65	3.6	0.003	0.79	0.0	0.04	17.30	0.01	2.214	7.96	0.00	3.9	96.1	0.0	1.46	0.51	0.48	0.76	1.57	3567	463	3	0	3	0	0	logfile
✔	7RR0	24649	2022-11-29	2021-08-08	3.12	3.40	—	3.4	0.004	0.97	0.0	0.06	12.18	0.01	2.327	2.79	0.00	1.4	98.6	0.0	0.12	0.75	0.77	2.73	3.4	0.003	0.75	0.0	0.04	15.98	0.00	2.216	11.32	0.00	3.6	96.4	0.0	-0.08	1.26	0.77	0.81	2.73	3297	422	4	0	1	0	0	logfile
✔	7P2Q	13172	2022-11-29	2021-07-06	4.9	4.54	—	4.3	0.003	0.80	0.0	0.05	8.69	0.01	2.264	4.28	0.00	5.0	95.0	0.0	-3.09	0.77	0.72	—	4.3	0.003	0.75	0.0	0.04	12.53	0.00	2.212	14.61	0.00	4.7	95.3	0.0	-0.39	1.80	0.80	0.74	—	4780	587	5	0	5	0	0	logfile
✔	7PDH	13338	2022-11-29	2021-08-05	4.0	3.51	—	3.2	0.003	0.70	0.0	0.04	14.16	0.00	2.169	14.54	0.00	5.8	94.2	0.0	-1.07	0.79	0.69	—	3.2	0.003	0.69	0.0	0.04	16.40	0.00	2.171	14.54	0.00	6.7	93.3	0.0	-0.70	0.53	0.79	0.70	—	4516	577	2	0	0	0	0	logfile
✔	7E0F	30931	2022-11-29	2021-01-27	3.02	3.18	—	3.5	0.016	0.99	0.0	0.07	15.88	0.00	2.341	9.76	0.00	12.8	87.2	0.0	-5.10	0.39	0.81	5.04	3.4	0.004	0.64	0.0	0.05	16.06	0.00	2.487	5.37	0.00	9.2	90.8	0.0	-3.48	0.60	0.40	0.81	3.91	2022	294	6	0	0	0	0	logfile
✔	6QJH	4563	2022-11-29	2019-01-24	3.3	3.70	2.77	3.6	0.012	1.21	3.0	0.10	14.39	0.01	2.673	1.49	1.96	7.0	93.0	0.0	-3.22	0.36	0.83	2.97	3.6	0.003	0.61	0.0	0.05	15.77	0.00	2.278	5.61	0.00	2.3	97.7	0.0	-2.55	1.57	0.31	0.78	2.85	1302	177	3	0	0	0	0	logfile
✔	6UES	20755	2022-11-29	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.87	0.0	0.04	21.10	0.01	1.792	36.17	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile

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