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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7M62 | 23687 | 2023-08-09 | 2021-03-25 | 3.9 | 3.91 | — | 4.3 | 0.007 | 1.13 | 0.0 | 0.07 | 14.83 | 0.00 | 2.321 | 32.83 | 0.00 | 23.3 | 76.7 | 0.0 | -4.97 | 0.55 | 0.62 | 2.27 | 4.2 | 0.006 | 1.03 | 0.0 | 0.06 | 15.73 | 0.00 | 2.059 | 31.10 | 2.22 | 26.0 | 74.0 | 0.0 | -4.94 | 2.76 | 0.57 | 0.68 | 2.84 | 2380 | 320 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 7BZX | 30262 | 2023-08-09 | 2020-04-28 | 4.0 | 4.19 | — | 3.2 | 0.019 | 2.22 | 9.0 | 0.12 | 8.56 | 0.01 | 2.485 | 2.40 | 0.00 | 6.6 | 92.1 | 1.3 | -2.90 | 0.47 | 0.25 | — | 2.8 | 0.006 | 1.18 | 0.0 | 0.05 | 9.20 | 0.01 | 2.035 | 27.91 | 0.00 | 24.1 | 75.8 | 0.1 | -4.93 | 2.97 | 0.75 | 0.58 | — | 5652 | 1154 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oKS | 20103 | 2023-08-13 | 2019-04-15 | 4.2 | 4.44 | — | 4.3 | 0.008 | 1.15 | 0.0 | 0.05 | 17.36 | 0.01 | 2.299 | 5.88 | 9.80 | 18.3 | 81.7 | 0.0 | -5.50 | 0.78 | 0.81 | — | 4.3 | 0.004 | 0.84 | 0.0 | 0.05 | 14.37 | 0.01 | 2.223 | 15.59 | 0.00 | 16.0 | 84.0 | 0.0 | -4.93 | 2.23 | 0.79 | 0.82 | — | 13244 | 1610 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q67 | 13854 | 2023-08-09 | 2021-11-05 | 3.37 | 3.41 | 2.44 | 3.4 | 0.020 | 2.21 | 0.0 | 0.14 | 14.47 | 0.01 | 2.280 | 12.16 | 8.00 | 16.1 | 83.9 | 0.0 | -4.98 | 0.51 | 0.71 | 2.52 | 3.5 | 0.003 | 0.90 | 0.0 | 0.05 | 18.07 | 0.00 | 2.112 | 24.32 | 0.73 | 19.4 | 80.6 | 0.0 | -4.92 | 2.31 | 0.45 | 0.69 | 0.92 | 2618 | 363 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XYM | 33522 | 2023-08-13 | 2022-06-01 | 3.3 | 3.70 | 3.42 | 3.6 | 0.009 | 1.58 | 6.0 | 0.07 | 14.87 | 0.01 | 1.028 | 29.59 | 0.49 | 25.5 | 71.6 | 2.9 | -6.19 | 0.71 | 0.74 | 1.93 | 3.6 | 0.005 | 1.11 | 0.0 | 0.06 | 16.43 | 0.01 | 2.042 | 25.55 | 0.57 | 26.6 | 71.6 | 1.8 | -4.90 | 1.14 | 0.70 | 0.79 | 1.95 | 11436 | 1464 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YAT | 33719 | 2023-08-09 | 2022-06-28 | 2.2 | 2.33 | 1.39 | 2.3 | 0.009 | 1.06 | 0.0 | 0.06 | 14.84 | 0.00 | 2.267 | 9.86 | 0.00 | 4.3 | 95.7 | 0.0 | -4.79 | 0.61 | 0.88 | 7.98 | 2.3 | 0.003 | 0.81 | 0.0 | 0.05 | 15.27 | 0.01 | 2.285 | 11.34 | 0.00 | 4.5 | 95.5 | 0.0 | -4.89 | 0.41 | 0.64 | 0.91 | 7.20 | 4129 | 600 | 45 | 0 | 0 | 25 | 0 | logfile |
✔ | 7V4B | 31706 | 2023-08-09 | 2021-08-12 | 3.1 | 3.04 | — | 3.1 | 0.006 | 0.60 | 0.0 | 0.05 | 14.55 | 0.00 | 2.375 | 15.32 | 0.00 | 13.2 | 86.8 | 0.0 | -5.99 | 0.41 | 0.69 | 2.66 | 3.2 | 0.004 | 0.58 | 0.0 | 0.05 | 17.12 | 0.00 | 2.167 | 8.61 | 0.89 | 12.3 | 87.7 | 0.0 | -4.88 | 0.56 | 0.41 | 0.68 | 2.15 | 3336 | 480 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VW2 | 21410 | 2023-08-09 | 2020-02-18 | 3.4 | 3.62 | — | 3.8 | 0.006 | 1.13 | 0.0 | 0.06 | 14.20 | 0.01 | 2.292 | 24.13 | 0.00 | 27.3 | 72.7 | 0.0 | -4.46 | 0.42 | 0.71 | 2.71 | 3.9 | 0.004 | 0.83 | 0.0 | 0.05 | 14.71 | 0.00 | 2.227 | 13.08 | 0.00 | 15.5 | 84.5 | 0.0 | -4.88 | 0.43 | 0.39 | 0.70 | 1.67 | 1800 | 240 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6B19 | 7031 | 2023-08-09 | 2017-09-18 | 4.5 | 4.61 | — | 4.4 | 0.023 | 1.38 | 0.0 | 0.05 | 6.45 | 0.01 | 2.201 | 16.18 | 0.00 | 19.4 | 80.5 | 0.1 | -5.73 | 0.74 | 0.63 | — | 4.4 | 0.003 | 0.84 | 0.0 | 0.04 | 12.73 | 0.00 | 1.937 | 28.68 | 0.00 | 25.4 | 74.6 | 0.0 | -4.85 | 1.32 | 0.78 | 0.68 | — | 5699 | 907 | 4 | 38 | 0 | 0 | 409 | logfile |
✔ | 6Y1A | 10669 | 2023-08-09 | 2020-02-11 | 4.2 | 3.60 | 1.84 | 4.3 | 0.005 | 1.09 | 0.0 | 0.07 | 9.42 | 0.00 | 2.509 | 15.01 | 0.00 | 4.3 | 95.7 | 0.0 | -4.99 | 0.53 | 0.63 | — | 4.2 | 0.005 | 0.75 | 0.0 | 0.04 | 11.01 | 0.00 | 2.047 | 15.36 | 0.00 | 9.8 | 90.2 | 0.0 | -4.85 | 1.54 | 0.57 | 0.75 | — | 2960 | 400 | 32 | 0 | 16 | 0 | 0 | logfile |
✔ | 7YL3 | 33902 | 2023-08-09 | 2022-07-25 | 3.2 | 3.58 | 3.19 | 3.5 | 0.011 | 2.22 | 0.0 | 0.06 | 10.67 | 0.00 | 1.654 | 22.50 | 0.00 | 3.3 | 96.7 | 0.0 | -4.03 | 0.45 | 0.76 | 4.44 | 3.5 | 0.007 | 0.82 | 0.0 | 0.05 | 13.30 | 0.00 | 2.246 | 11.74 | 0.31 | 12.8 | 87.2 | 0.0 | -4.85 | 1.42 | 0.43 | 0.77 | 4.87 | 2958 | 396 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7X83 | 33054 | 2023-08-09 | 2022-03-11 | 3.4 | 3.15 | 2.86 | 3.5 | 0.009 | 0.82 | 0.0 | 0.06 | 13.35 | 0.00 | 2.217 | 17.05 | 0.00 | 15.8 | 84.2 | 0.0 | -5.71 | 0.38 | 0.84 | 4.55 | 3.6 | 0.004 | 0.70 | 0.0 | 0.05 | 15.14 | 0.00 | 2.247 | 12.75 | 0.79 | 13.3 | 86.7 | 0.0 | -4.84 | 0.60 | 0.39 | 0.84 | 4.52 | 3258 | 405 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6R4R | 4727 | 2023-08-09 | 2019-03-23 | 3.4 | 3.01 | 1.77 | 3.8 | 0.008 | 1.43 | 0.0 | 0.08 | 10.87 | 0.01 | 2.308 | 6.73 | 0.00 | 12.0 | 88.0 | 0.0 | -5.16 | 0.32 | 0.64 | 5.08 | 3.6 | 0.005 | 0.81 | 0.0 | 0.05 | 16.69 | 0.00 | 2.109 | 15.14 | 0.68 | 9.1 | 90.9 | 0.0 | -4.84 | 3.88 | 0.31 | 0.68 | 3.65 | 4312 | 539 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8D1B | 27121 | 2023-08-10 | 2022-05-27 | 3.57 | 3.85 | 3.45 | 3.8 | 0.006 | 1.09 | 0.0 | 0.05 | 14.42 | 0.01 | 2.084 | 19.71 | 0.28 | 24.1 | 75.9 | 0.0 | -6.32 | 0.76 | 0.81 | 2.61 | 3.8 | 0.004 | 0.86 | 0.0 | 0.04 | 16.37 | 0.01 | 2.120 | 12.64 | 0.42 | 17.4 | 82.6 | 0.0 | -4.80 | 2.74 | 0.72 | 0.78 | 2.09 | 6724 | 874 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NYL | 0545 | 2023-08-16 | 2019-02-11 | 3.7 | 4.50 | — | 4.1 | 0.008 | 1.14 | 0.0 | 0.06 | 11.10 | 0.01 | 2.233 | 10.38 | 0.97 | 16.1 | 83.9 | 0.0 | -5.60 | 0.87 | 0.74 | 2.26 | 4.1 | 0.005 | 0.81 | 0.0 | 0.05 | 12.87 | 0.00 | 2.133 | 25.47 | 0.31 | 20.1 | 79.9 | 0.0 | -4.78 | 0.53 | 0.87 | 0.74 | 1.84 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7C1D | 30269 | 2023-08-09 | 2020-05-03 | 3.8 | 4.18 | — | 4.3 | 0.004 | 0.71 | 0.0 | 0.05 | 13.99 | 0.00 | 2.367 | 18.87 | 0.00 | 20.4 | 79.6 | 0.0 | -6.46 | 0.34 | 0.74 | 3.47 | 6.5 | 0.003 | 0.63 | 0.0 | 0.05 | 14.86 | 0.00 | 2.265 | 16.18 | 2.08 | 14.6 | 85.4 | 0.0 | -4.73 | 2.82 | 0.39 | 0.75 | 3.16 | 2034 | 306 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YKW | 33897 | 2023-08-09 | 2022-07-25 | 3.6 | 4.09 | 3.10 | 4.0 | 0.012 | 1.76 | 0.0 | 0.09 | 11.87 | 0.00 | 2.538 | 10.73 | 0.00 | 3.9 | 96.1 | 0.0 | -3.01 | 0.63 | 0.78 | 4.01 | 4.0 | 0.004 | 0.71 | 0.0 | 0.04 | 13.95 | 0.00 | 2.258 | 9.90 | 0.00 | 0.4 | 99.6 | 0.0 | -4.70 | 1.53 | 0.63 | 0.76 | 4.18 | 1908 | 256 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZD0 | 11172 | 2023-08-10 | 2020-06-13 | 4.6 | 4.62 | 2.80 | 3.7 | 0.004 | 0.91 | 0.0 | 0.05 | 7.55 | 0.00 | 2.207 | 10.05 | 0.00 | 10.1 | 89.8 | 0.1 | -4.73 | 0.59 | 0.58 | — | 4.5 | 0.003 | 0.78 | 0.0 | 0.04 | 5.38 | 0.00 | 2.341 | 5.89 | 0.00 | 15.0 | 84.6 | 0.4 | -4.68 | 2.32 | 0.61 | 0.58 | — | 7962 | 1611 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oZG | 13123 | 2023-08-09 | 2021-06-28 | 3.3 | 3.21 | 2.71 | 3.6 | 0.023 | 1.83 | 0.0 | 0.10 | 12.75 | 0.01 | 2.254 | 17.09 | 0.00 | 8.7 | 91.3 | 0.0 | -4.01 | 0.40 | 0.73 | 3.72 | 3.7 | 0.006 | 0.83 | 0.0 | 0.05 | 15.17 | 0.00 | 2.314 | 18.76 | 0.61 | 15.2 | 84.8 | 0.0 | -4.68 | 3.41 | 0.35 | 0.68 | 5.07 | 4960 | 730 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RL4 | 24514 | 2023-08-09 | 2021-07-23 | 2.86 | 2.50 | — | 3.1 | 0.015 | 1.16 | 0.0 | 0.07 | 16.04 | 0.01 | 2.535 | 12.04 | 0.00 | 12.5 | 87.5 | 0.0 | -4.62 | 0.39 | 0.82 | 4.55 | 3.1 | 0.009 | 0.89 | 0.0 | 0.05 | 16.66 | 0.00 | 2.208 | 17.42 | 3.00 | 7.0 | 93.0 | 0.0 | -4.67 | 1.13 | 0.39 | 0.84 | 4.85 | 4620 | 680 | 20 | 0 | 0 | 0 | 0 | logfile |