Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7M62	23687	2023-08-09	2021-03-25	3.9	3.91	—	4.3	0.007	1.13	0.0	0.07	14.83	0.00	2.321	32.83	0.00	23.3	76.7	0.0	-4.97	0.55	0.62	2.27	4.2	0.006	1.03	0.0	0.06	15.73	0.00	2.059	31.10	2.22	26.0	74.0	0.0	-4.94	2.76	0.57	0.68	2.84	2380	320	10	0	10	0	0	logfile
✔	7BZX	30262	2023-08-09	2020-04-28	4.0	4.19	—	3.2	0.019	2.22	9.0	0.12	8.56	0.01	2.485	2.40	0.00	6.6	92.1	1.3	-2.90	0.47	0.25	—	2.8	0.006	1.18	0.0	0.05	9.20	0.01	2.035	27.91	0.00	24.1	75.8	0.1	-4.93	2.97	0.75	0.58	—	5652	1154	2	0	0	0	0	logfile
✔	6oKS	20103	2023-08-13	2019-04-15	4.2	4.44	—	4.3	0.008	1.15	0.0	0.05	17.36	0.01	2.299	5.88	9.80	18.3	81.7	0.0	-5.50	0.78	0.81	—	4.3	0.004	0.84	0.0	0.05	14.37	0.01	2.223	15.59	0.00	16.0	84.0	0.0	-4.93	2.23	0.79	0.82	—	13244	1610	14	0	0	0	0	logfile
✔	7Q67	13854	2023-08-09	2021-11-05	3.37	3.41	2.44	3.4	0.020	2.21	0.0	0.14	14.47	0.01	2.280	12.16	8.00	16.1	83.9	0.0	-4.98	0.51	0.71	2.52	3.5	0.003	0.90	0.0	0.05	18.07	0.00	2.112	24.32	0.73	19.4	80.6	0.0	-4.92	2.31	0.45	0.69	0.92	2618	363	11	0	0	0	0	logfile
✔	7XYM	33522	2023-08-13	2022-06-01	3.3	3.70	3.42	3.6	0.009	1.58	6.0	0.07	14.87	0.01	1.028	29.59	0.49	25.5	71.6	2.9	-6.19	0.71	0.74	1.93	3.6	0.005	1.11	0.0	0.06	16.43	0.01	2.042	25.55	0.57	26.6	71.6	1.8	-4.90	1.14	0.70	0.79	1.95	11436	1464	3	0	0	0	0	logfile
✔	7YAT	33719	2023-08-09	2022-06-28	2.2	2.33	1.39	2.3	0.009	1.06	0.0	0.06	14.84	0.00	2.267	9.86	0.00	4.3	95.7	0.0	-4.79	0.61	0.88	7.98	2.3	0.003	0.81	0.0	0.05	15.27	0.01	2.285	11.34	0.00	4.5	95.5	0.0	-4.89	0.41	0.64	0.91	7.20	4129	600	45	0	0	25	0	logfile
✔	7V4B	31706	2023-08-09	2021-08-12	3.1	3.04	—	3.1	0.006	0.60	0.0	0.05	14.55	0.00	2.375	15.32	0.00	13.2	86.8	0.0	-5.99	0.41	0.69	2.66	3.2	0.004	0.58	0.0	0.05	17.12	0.00	2.167	8.61	0.89	12.3	87.7	0.0	-4.88	0.56	0.41	0.68	2.15	3336	480	6	0	0	0	0	logfile
✔	6VW2	21410	2023-08-09	2020-02-18	3.4	3.62	—	3.8	0.006	1.13	0.0	0.06	14.20	0.01	2.292	24.13	0.00	27.3	72.7	0.0	-4.46	0.42	0.71	2.71	3.9	0.004	0.83	0.0	0.05	14.71	0.00	2.227	13.08	0.00	15.5	84.5	0.0	-4.88	0.43	0.39	0.70	1.67	1800	240	10	0	0	0	0	logfile
✔	6B19	7031	2023-08-09	2017-09-18	4.5	4.61	—	4.4	0.023	1.38	0.0	0.05	6.45	0.01	2.201	16.18	0.00	19.4	80.5	0.1	-5.73	0.74	0.63	—	4.4	0.003	0.84	0.0	0.04	12.73	0.00	1.937	28.68	0.00	25.4	74.6	0.0	-4.85	1.32	0.78	0.68	—	5699	907	4	38	0	0	409	logfile
✔	6Y1A	10669	2023-08-09	2020-02-11	4.2	3.60	1.84	4.3	0.005	1.09	0.0	0.07	9.42	0.00	2.509	15.01	0.00	4.3	95.7	0.0	-4.99	0.53	0.63	—	4.2	0.005	0.75	0.0	0.04	11.01	0.00	2.047	15.36	0.00	9.8	90.2	0.0	-4.85	1.54	0.57	0.75	—	2960	400	32	0	16	0	0	logfile
✔	7YL3	33902	2023-08-09	2022-07-25	3.2	3.58	3.19	3.5	0.011	2.22	0.0	0.06	10.67	0.00	1.654	22.50	0.00	3.3	96.7	0.0	-4.03	0.45	0.76	4.44	3.5	0.007	0.82	0.0	0.05	13.30	0.00	2.246	11.74	0.31	12.8	87.2	0.0	-4.85	1.42	0.43	0.77	4.87	2958	396	12	0	0	0	0	logfile
✔	7X83	33054	2023-08-09	2022-03-11	3.4	3.15	2.86	3.5	0.009	0.82	0.0	0.06	13.35	0.00	2.217	17.05	0.00	15.8	84.2	0.0	-5.71	0.38	0.84	4.55	3.6	0.004	0.70	0.0	0.05	15.14	0.00	2.247	12.75	0.79	13.3	86.7	0.0	-4.84	0.60	0.39	0.84	4.52	3258	405	3	0	0	0	0	logfile
✔	6R4R	4727	2023-08-09	2019-03-23	3.4	3.01	1.77	3.8	0.008	1.43	0.0	0.08	10.87	0.01	2.308	6.73	0.00	12.0	88.0	0.0	-5.16	0.32	0.64	5.08	3.6	0.005	0.81	0.0	0.05	16.69	0.00	2.109	15.14	0.68	9.1	90.9	0.0	-4.84	3.88	0.31	0.68	3.65	4312	539	7	0	0	0	0	logfile
✔	8D1B	27121	2023-08-10	2022-05-27	3.57	3.85	3.45	3.8	0.006	1.09	0.0	0.05	14.42	0.01	2.084	19.71	0.28	24.1	75.9	0.0	-6.32	0.76	0.81	2.61	3.8	0.004	0.86	0.0	0.04	16.37	0.01	2.120	12.64	0.42	17.4	82.6	0.0	-4.80	2.74	0.72	0.78	2.09	6724	874	4	0	0	0	0	logfile
✔	6NYL	0545	2023-08-16	2019-02-11	3.7	4.50	—	4.1	0.008	1.14	0.0	0.06	11.10	0.01	2.233	10.38	0.97	16.1	83.9	0.0	-5.60	0.87	0.74	2.26	4.1	0.005	0.81	0.0	0.05	12.87	0.00	2.133	25.47	0.31	20.1	79.9	0.0	-4.78	0.53	0.87	0.74	1.84	68664	9000	12	0	0	0	0	logfile
✔	7C1D	30269	2023-08-09	2020-05-03	3.8	4.18	—	4.3	0.004	0.71	0.0	0.05	13.99	0.00	2.367	18.87	0.00	20.4	79.6	0.0	-6.46	0.34	0.74	3.47	6.5	0.003	0.63	0.0	0.05	14.86	0.00	2.265	16.18	2.08	14.6	85.4	0.0	-4.73	2.82	0.39	0.75	3.16	2034	306	6	0	0	0	0	logfile
✔	7YKW	33897	2023-08-09	2022-07-25	3.6	4.09	3.10	4.0	0.012	1.76	0.0	0.09	11.87	0.00	2.538	10.73	0.00	3.9	96.1	0.0	-3.01	0.63	0.78	4.01	4.0	0.004	0.71	0.0	0.04	13.95	0.00	2.258	9.90	0.00	0.4	99.6	0.0	-4.70	1.53	0.63	0.76	4.18	1908	256	8	0	0	0	0	logfile
✔	6ZD0	11172	2023-08-10	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	10.05	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	4.5	0.003	0.78	0.0	0.04	5.38	0.00	2.341	5.89	0.00	15.0	84.6	0.4	-4.68	2.32	0.61	0.58	—	7962	1611	6	0	0	0	0	logfile
✔	7oZG	13123	2023-08-09	2021-06-28	3.3	3.21	2.71	3.6	0.023	1.83	0.0	0.10	12.75	0.01	2.254	17.09	0.00	8.7	91.3	0.0	-4.01	0.40	0.73	3.72	3.7	0.006	0.83	0.0	0.05	15.17	0.00	2.314	18.76	0.61	15.2	84.8	0.0	-4.68	3.41	0.35	0.68	5.07	4960	730	10	0	0	0	0	logfile
✔	7RL4	24514	2023-08-09	2021-07-23	2.86	2.50	—	3.1	0.015	1.16	0.0	0.07	16.04	0.01	2.535	12.04	0.00	12.5	87.5	0.0	-4.62	0.39	0.82	4.55	3.1	0.009	0.89	0.0	0.05	16.66	0.00	2.208	17.42	3.00	7.0	93.0	0.0	-4.67	1.13	0.39	0.84	4.85	4620	680	20	0	0	0	0	logfile

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