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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7U2B | 26311 | 2023-02-18 | 2022-02-23 | 4.1 | 4.26 | — | 4.2 | 0.009 | 0.96 | 0.0 | 0.05 | 14.98 | 0.00 | 1.936 | 7.07 | 0.15 | 0.1 | 99.9 | 0.0 | 2.20 | 0.72 | 0.71 | — | 4.2 | 0.003 | 0.62 | 0.0 | 0.04 | 15.43 | 0.00 | 2.153 | 10.28 | 0.00 | 1.8 | 98.2 | 0.0 | 0.53 | 1.44 | 0.78 | 0.80 | — | 7316 | 780 | 5 | 53 | 2 | 0 | 0 | logfile |
✔ | 7PLZ | 13507 | 2023-02-24 | 2021-09-01 | 3.2 | 3.30 | 3.19 | 3.2 | 0.016 | 1.53 | 0.0 | 0.06 | 15.39 | 0.01 | 2.054 | 5.68 | 0.00 | 0.1 | 99.9 | 0.0 | -1.13 | 0.88 | 0.84 | 2.66 | 3.2 | 0.004 | 0.94 | 0.0 | 0.04 | 16.54 | 0.00 | 2.035 | 7.83 | 0.08 | 1.5 | 98.5 | 0.0 | 1.15 | 0.79 | 0.89 | 0.88 | 2.25 | 23278 | 2887 | 10 | 0 | 12 | 0 | 0 | logfile |
✔ | 7PLW | 13504 | 2023-02-19 | 2021-09-01 | 3.5 | 4.05 | 3.55 | 3.5 | 0.005 | 0.84 | 1.0 | 0.05 | 15.08 | 0.01 | 1.323 | 4.81 | 0.00 | 0.2 | 99.8 | 0.0 | -1.69 | 0.91 | 0.83 | 3.00 | 3.5 | 0.003 | 0.64 | 1.0 | 0.04 | 15.73 | 0.00 | 1.996 | 8.33 | 0.00 | 1.6 | 98.4 | 0.0 | 1.19 | 1.31 | 0.91 | 0.85 | 2.30 | 10139 | 1263 | 5 | 0 | 3 | 0 | 0 | logfile |
✔ | 7PMC | 13528 | 2023-02-19 | 2021-09-02 | 3.7 | 4.09 | 3.62 | 3.5 | 0.008 | 1.07 | 2.0 | 0.06 | 16.08 | 0.01 | 1.317 | 7.05 | 0.09 | 0.2 | 99.8 | 0.0 | -1.41 | 0.89 | 0.80 | 2.38 | 3.5 | 0.003 | 0.70 | 1.0 | 0.04 | 16.16 | 0.00 | 1.914 | 10.87 | 0.37 | 1.6 | 98.4 | 0.0 | 1.39 | 1.34 | 0.90 | 0.82 | 1.83 | 10139 | 1258 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 7PMA | 13526 | 2023-02-19 | 2021-09-02 | 3.6 | 4.07 | 3.61 | 3.5 | 0.004 | 0.88 | 2.0 | 0.05 | 15.79 | 0.01 | 1.317 | 6.45 | 0.09 | 0.2 | 99.8 | 0.0 | -1.07 | 0.90 | 0.82 | 2.92 | 3.5 | 0.003 | 0.71 | 2.0 | 0.04 | 15.49 | 0.00 | 1.955 | 9.55 | 0.37 | 1.5 | 98.5 | 0.0 | 1.52 | 1.29 | 0.91 | 0.84 | 2.40 | 10066 | 1249 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 7PLX | 13505 | 2023-02-19 | 2021-09-01 | 3.6 | 4.05 | 3.55 | 3.5 | 0.005 | 0.82 | 2.0 | 0.05 | 14.88 | 0.01 | 1.321 | 5.85 | 0.00 | 0.2 | 99.8 | 0.0 | -1.17 | 0.90 | 0.81 | 3.07 | 3.5 | 0.004 | 0.71 | 1.0 | 0.04 | 15.56 | 0.00 | 1.893 | 10.37 | 0.18 | 1.9 | 98.1 | 0.0 | 1.59 | 1.32 | 0.92 | 0.85 | 2.85 | 10139 | 1263 | 5 | 0 | 3 | 0 | 0 | logfile |
✔ | 7PML | 13538 | 2023-02-19 | 2021-09-02 | 3.3 | 4.18 | 3.26 | 3.2 | 0.005 | 0.86 | 2.0 | 0.05 | 15.41 | 0.01 | 1.315 | 3.95 | 0.09 | 0.2 | 99.8 | 0.0 | -1.35 | 0.91 | 0.83 | 2.88 | 3.3 | 0.003 | 0.65 | 1.0 | 0.04 | 15.90 | 0.00 | 1.993 | 6.82 | 0.00 | 1.2 | 98.8 | 0.0 | 1.76 | 0.72 | 0.94 | 0.88 | 2.27 | 10189 | 1264 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7PLT | 13501 | 2023-02-19 | 2021-09-01 | 3.3 | 3.94 | 3.24 | 3.4 | 0.014 | 1.15 | 2.0 | 0.07 | 14.56 | 0.01 | 1.312 | 4.16 | 0.00 | 0.2 | 99.8 | 0.0 | -1.61 | 0.92 | 0.87 | 3.10 | 3.5 | 0.003 | 0.64 | 1.0 | 0.04 | 15.46 | 0.00 | 2.028 | 7.78 | 0.00 | 1.1 | 98.9 | 0.0 | 1.62 | 0.64 | 0.91 | 0.88 | 2.22 | 10148 | 1264 | 5 | 0 | 3 | 0 | 0 | logfile |
✔ | 7PM9 | 13525 | 2023-02-19 | 2021-09-02 | 3.7 | 4.22 | 3.68 | 3.6 | 0.005 | 0.93 | 2.0 | 0.05 | 16.04 | 0.01 | 1.316 | 7.04 | 0.09 | 0.2 | 99.8 | 0.0 | -1.87 | 0.90 | 0.80 | 2.23 | 3.6 | 0.003 | 0.69 | 1.0 | 0.04 | 16.13 | 0.00 | 1.991 | 10.28 | 0.19 | 2.0 | 98.0 | 0.0 | 1.57 | 1.73 | 0.91 | 0.84 | 1.96 | 10086 | 1252 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 7PMJ | 13536 | 2023-02-19 | 2021-09-02 | 3.4 | 4.31 | 3.37 | 3.3 | 0.010 | 1.11 | 2.0 | 0.06 | 15.32 | 0.01 | 1.310 | 6.69 | 0.09 | 0.2 | 99.8 | 0.0 | -1.97 | 0.90 | 0.82 | 3.01 | 3.3 | 0.002 | 0.61 | 1.0 | 0.04 | 15.56 | 0.00 | 1.983 | 7.44 | 0.09 | 1.6 | 98.4 | 0.0 | 1.76 | 0.73 | 0.93 | 0.86 | 2.38 | 10085 | 1251 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 6XLA | 22237 | 2023-02-17 | 2020-06-28 | 3.1 | 3.41 | — | 3.3 | 0.005 | 0.65 | 0.0 | 0.04 | 19.84 | 0.00 | 2.276 | 3.37 | 0.00 | 0.2 | 99.8 | 0.0 | -2.59 | 0.78 | 0.84 | 3.37 | 3.3 | 0.003 | 0.55 | 0.0 | 0.04 | 20.59 | 0.00 | 2.115 | 4.72 | 0.61 | 2.3 | 97.7 | 0.0 | -0.34 | 1.32 | 0.79 | 0.86 | 2.94 | 5403 | 536 | 6 | 46 | 2 | 0 | 0 | logfile |
✘ | 7M5o | 23678 | 2023-02-20 | 2021-03-24 | 3.54 | 2.81 | 3.58 | 3.6 | 0.003 | 0.54 | 0.0 | 0.04 | 15.95 | 0.00 | 1.978 | 10.65 | 1.25 | 0.2 | 99.8 | 0.0 | -2.03 | 0.79 | 0.75 | 1.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11648 | 655 | 3 | 37 | 1 | 0 | 5635 | logfile |
✔ | 7PMD | 13529 | 2023-02-19 | 2021-09-02 | 2.9 | 4.01 | 2.83 | 3.4 | 0.012 | 1.06 | 2.0 | 0.06 | 14.84 | 0.01 | 1.314 | 3.61 | 0.09 | 0.2 | 99.8 | 0.0 | -1.33 | 0.94 | 0.88 | 3.40 | 3.4 | 0.002 | 0.64 | 1.0 | 0.04 | 15.39 | 0.00 | 2.040 | 6.62 | 0.65 | 1.7 | 98.3 | 0.0 | 1.81 | 1.26 | 0.93 | 0.87 | 3.00 | 10189 | 1264 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7PMB | 13527 | 2023-02-19 | 2021-09-02 | 3.6 | 4.10 | 3.61 | 3.6 | 0.006 | 0.93 | 2.0 | 0.06 | 15.72 | 0.01 | 1.317 | 6.47 | 0.09 | 0.2 | 99.8 | 0.0 | -1.25 | 0.90 | 0.83 | 2.52 | 3.7 | 0.003 | 0.71 | 1.0 | 0.04 | 16.45 | 0.00 | 1.955 | 8.91 | 0.00 | 2.1 | 97.9 | 0.0 | 1.39 | 1.32 | 0.90 | 0.85 | 2.19 | 10113 | 1255 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 7PLY | 13506 | 2023-02-19 | 2021-09-01 | 3.2 | 3.79 | 3.37 | 3.5 | 0.016 | 1.49 | 0.0 | 0.07 | 15.18 | 0.01 | 2.228 | 3.82 | 0.00 | 0.2 | 99.8 | 0.0 | -1.06 | 0.89 | 0.85 | 2.92 | 3.6 | 0.003 | 0.84 | 0.0 | 0.04 | 15.92 | 0.00 | 2.068 | 6.15 | 0.09 | 1.2 | 98.8 | 0.0 | 1.69 | 0.67 | 0.85 | 0.84 | 2.11 | 10149 | 1258 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7PM7 | 13523 | 2023-02-19 | 2021-09-02 | 3.5 | 3.92 | 3.46 | 3.4 | 0.004 | 0.85 | 2.0 | 0.05 | 15.53 | 0.01 | 1.316 | 5.26 | 0.09 | 0.2 | 99.8 | 0.0 | -1.31 | 0.90 | 0.84 | 3.49 | 3.4 | 0.003 | 0.67 | 1.0 | 0.04 | 15.64 | 0.00 | 1.969 | 8.68 | 0.28 | 1.7 | 98.3 | 0.0 | 1.80 | 2.25 | 0.90 | 0.84 | 2.87 | 10149 | 1260 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 7PMH | 13533 | 2023-02-19 | 2021-09-02 | 3.4 | 4.28 | 3.26 | 3.3 | 0.009 | 1.01 | 3.0 | 0.06 | 14.97 | 0.01 | 1.310 | 4.17 | 0.09 | 0.2 | 99.8 | 0.0 | -1.51 | 0.91 | 0.83 | 3.35 | 3.3 | 0.002 | 0.63 | 1.0 | 0.04 | 15.46 | 0.00 | 2.076 | 7.04 | 0.00 | 1.2 | 98.8 | 0.0 | 1.79 | 1.28 | 0.94 | 0.88 | 2.75 | 10154 | 1259 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7PMF | 13531 | 2023-02-19 | 2021-09-02 | 3.4 | 4.29 | 3.46 | 3.3 | 0.010 | 1.00 | 2.0 | 0.06 | 14.81 | 0.01 | 1.313 | 3.78 | 0.09 | 0.2 | 99.8 | 0.0 | -1.44 | 0.91 | 0.83 | 3.07 | 3.3 | 0.002 | 0.62 | 1.0 | 0.04 | 15.07 | 0.00 | 1.979 | 6.66 | 0.09 | 1.4 | 98.6 | 0.0 | 1.92 | 1.69 | 0.94 | 0.88 | 2.52 | 10125 | 1256 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7PMG | 13532 | 2023-02-19 | 2021-09-02 | 3.3 | 4.20 | 3.27 | 3.2 | 0.014 | 1.18 | 3.0 | 0.07 | 15.15 | 0.01 | 1.308 | 4.64 | 0.09 | 0.2 | 99.8 | 0.0 | -1.37 | 0.92 | 0.85 | 3.45 | 3.3 | 0.003 | 0.63 | 1.0 | 0.04 | 15.26 | 0.00 | 1.982 | 6.27 | 0.00 | 1.4 | 98.6 | 0.0 | 1.72 | 1.26 | 0.94 | 0.89 | 2.87 | 10189 | 1264 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7PMi | 13535 | 2023-02-19 | 2021-09-02 | 3.3 | 4.20 | 3.27 | 3.2 | 0.014 | 1.17 | 3.0 | 0.07 | 15.30 | 0.01 | 1.306 | 5.04 | 0.09 | 0.2 | 99.8 | 0.0 | -1.50 | 0.92 | 0.84 | 2.97 | 3.2 | 0.003 | 0.69 | 1.0 | 0.04 | 15.66 | 0.00 | 2.015 | 8.05 | 0.18 | 1.8 | 98.2 | 0.0 | 1.27 | 0.66 | 0.94 | 0.88 | 2.61 | 10189 | 1264 | 6 | 0 | 6 | 0 | 0 | logfile |