Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7U2B	26311	2023-02-18	2022-02-23	4.1	4.26	—	4.2	0.009	0.96	0.0	0.05	14.98	0.00	1.936	7.07	0.15	0.1	99.9	0.0	2.20	0.72	0.71	—	4.2	0.003	0.62	0.0	0.04	15.43	0.00	2.153	10.28	0.00	1.8	98.2	0.0	0.53	1.44	0.78	0.80	—	7316	780	5	53	2	0	0	logfile
✔	7PLZ	13507	2023-02-24	2021-09-01	3.2	3.30	3.19	3.2	0.016	1.53	0.0	0.06	15.39	0.01	2.054	5.68	0.00	0.1	99.9	0.0	-1.13	0.88	0.84	2.66	3.2	0.004	0.94	0.0	0.04	16.54	0.00	2.035	7.83	0.08	1.5	98.5	0.0	1.15	0.79	0.89	0.88	2.25	23278	2887	10	0	12	0	0	logfile
✔	7PLW	13504	2023-02-19	2021-09-01	3.5	4.05	3.55	3.5	0.005	0.84	1.0	0.05	15.08	0.01	1.323	4.81	0.00	0.2	99.8	0.0	-1.69	0.91	0.83	3.00	3.5	0.003	0.64	1.0	0.04	15.73	0.00	1.996	8.33	0.00	1.6	98.4	0.0	1.19	1.31	0.91	0.85	2.30	10139	1263	5	0	3	0	0	logfile
✔	7PMC	13528	2023-02-19	2021-09-02	3.7	4.09	3.62	3.5	0.008	1.07	2.0	0.06	16.08	0.01	1.317	7.05	0.09	0.2	99.8	0.0	-1.41	0.89	0.80	2.38	3.5	0.003	0.70	1.0	0.04	16.16	0.00	1.914	10.87	0.37	1.6	98.4	0.0	1.39	1.34	0.90	0.82	1.83	10139	1258	6	0	5	0	0	logfile
✔	7PMA	13526	2023-02-19	2021-09-02	3.6	4.07	3.61	3.5	0.004	0.88	2.0	0.05	15.79	0.01	1.317	6.45	0.09	0.2	99.8	0.0	-1.07	0.90	0.82	2.92	3.5	0.003	0.71	2.0	0.04	15.49	0.00	1.955	9.55	0.37	1.5	98.5	0.0	1.52	1.29	0.91	0.84	2.40	10066	1249	6	0	5	0	0	logfile
✔	7PLX	13505	2023-02-19	2021-09-01	3.6	4.05	3.55	3.5	0.005	0.82	2.0	0.05	14.88	0.01	1.321	5.85	0.00	0.2	99.8	0.0	-1.17	0.90	0.81	3.07	3.5	0.004	0.71	1.0	0.04	15.56	0.00	1.893	10.37	0.18	1.9	98.1	0.0	1.59	1.32	0.92	0.85	2.85	10139	1263	5	0	3	0	0	logfile
✔	7PML	13538	2023-02-19	2021-09-02	3.3	4.18	3.26	3.2	0.005	0.86	2.0	0.05	15.41	0.01	1.315	3.95	0.09	0.2	99.8	0.0	-1.35	0.91	0.83	2.88	3.3	0.003	0.65	1.0	0.04	15.90	0.00	1.993	6.82	0.00	1.2	98.8	0.0	1.76	0.72	0.94	0.88	2.27	10189	1264	6	0	6	0	0	logfile
✔	7PLT	13501	2023-02-19	2021-09-01	3.3	3.94	3.24	3.4	0.014	1.15	2.0	0.07	14.56	0.01	1.312	4.16	0.00	0.2	99.8	0.0	-1.61	0.92	0.87	3.10	3.5	0.003	0.64	1.0	0.04	15.46	0.00	2.028	7.78	0.00	1.1	98.9	0.0	1.62	0.64	0.91	0.88	2.22	10148	1264	5	0	3	0	0	logfile
✔	7PM9	13525	2023-02-19	2021-09-02	3.7	4.22	3.68	3.6	0.005	0.93	2.0	0.05	16.04	0.01	1.316	7.04	0.09	0.2	99.8	0.0	-1.87	0.90	0.80	2.23	3.6	0.003	0.69	1.0	0.04	16.13	0.00	1.991	10.28	0.19	2.0	98.0	0.0	1.57	1.73	0.91	0.84	1.96	10086	1252	6	0	5	0	0	logfile
✔	7PMJ	13536	2023-02-19	2021-09-02	3.4	4.31	3.37	3.3	0.010	1.11	2.0	0.06	15.32	0.01	1.310	6.69	0.09	0.2	99.8	0.0	-1.97	0.90	0.82	3.01	3.3	0.002	0.61	1.0	0.04	15.56	0.00	1.983	7.44	0.09	1.6	98.4	0.0	1.76	0.73	0.93	0.86	2.38	10085	1251	6	0	6	0	0	logfile
✔	6XLA	22237	2023-02-17	2020-06-28	3.1	3.41	—	3.3	0.005	0.65	0.0	0.04	19.84	0.00	2.276	3.37	0.00	0.2	99.8	0.0	-2.59	0.78	0.84	3.37	3.3	0.003	0.55	0.0	0.04	20.59	0.00	2.115	4.72	0.61	2.3	97.7	0.0	-0.34	1.32	0.79	0.86	2.94	5403	536	6	46	2	0	0	logfile
✘	7M5o	23678	2023-02-20	2021-03-24	3.54	2.81	3.58	3.6	0.003	0.54	0.0	0.04	15.95	0.00	1.978	10.65	1.25	0.2	99.8	0.0	-2.03	0.79	0.75	1.08	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11648	655	3	37	1	0	5635	logfile
✔	7PMD	13529	2023-02-19	2021-09-02	2.9	4.01	2.83	3.4	0.012	1.06	2.0	0.06	14.84	0.01	1.314	3.61	0.09	0.2	99.8	0.0	-1.33	0.94	0.88	3.40	3.4	0.002	0.64	1.0	0.04	15.39	0.00	2.040	6.62	0.65	1.7	98.3	0.0	1.81	1.26	0.93	0.87	3.00	10189	1264	6	0	6	0	0	logfile
✔	7PMB	13527	2023-02-19	2021-09-02	3.6	4.10	3.61	3.6	0.006	0.93	2.0	0.06	15.72	0.01	1.317	6.47	0.09	0.2	99.8	0.0	-1.25	0.90	0.83	2.52	3.7	0.003	0.71	1.0	0.04	16.45	0.00	1.955	8.91	0.00	2.1	97.9	0.0	1.39	1.32	0.90	0.85	2.19	10113	1255	6	0	5	0	0	logfile
✔	7PLY	13506	2023-02-19	2021-09-01	3.2	3.79	3.37	3.5	0.016	1.49	0.0	0.07	15.18	0.01	2.228	3.82	0.00	0.2	99.8	0.0	-1.06	0.89	0.85	2.92	3.6	0.003	0.84	0.0	0.04	15.92	0.00	2.068	6.15	0.09	1.2	98.8	0.0	1.69	0.67	0.85	0.84	2.11	10149	1258	4	0	4	0	0	logfile
✔	7PM7	13523	2023-02-19	2021-09-02	3.5	3.92	3.46	3.4	0.004	0.85	2.0	0.05	15.53	0.01	1.316	5.26	0.09	0.2	99.8	0.0	-1.31	0.90	0.84	3.49	3.4	0.003	0.67	1.0	0.04	15.64	0.00	1.969	8.68	0.28	1.7	98.3	0.0	1.80	2.25	0.90	0.84	2.87	10149	1260	6	0	5	0	0	logfile
✔	7PMH	13533	2023-02-19	2021-09-02	3.4	4.28	3.26	3.3	0.009	1.01	3.0	0.06	14.97	0.01	1.310	4.17	0.09	0.2	99.8	0.0	-1.51	0.91	0.83	3.35	3.3	0.002	0.63	1.0	0.04	15.46	0.00	2.076	7.04	0.00	1.2	98.8	0.0	1.79	1.28	0.94	0.88	2.75	10154	1259	6	0	6	0	0	logfile
✔	7PMF	13531	2023-02-19	2021-09-02	3.4	4.29	3.46	3.3	0.010	1.00	2.0	0.06	14.81	0.01	1.313	3.78	0.09	0.2	99.8	0.0	-1.44	0.91	0.83	3.07	3.3	0.002	0.62	1.0	0.04	15.07	0.00	1.979	6.66	0.09	1.4	98.6	0.0	1.92	1.69	0.94	0.88	2.52	10125	1256	6	0	6	0	0	logfile
✔	7PMG	13532	2023-02-19	2021-09-02	3.3	4.20	3.27	3.2	0.014	1.18	3.0	0.07	15.15	0.01	1.308	4.64	0.09	0.2	99.8	0.0	-1.37	0.92	0.85	3.45	3.3	0.003	0.63	1.0	0.04	15.26	0.00	1.982	6.27	0.00	1.4	98.6	0.0	1.72	1.26	0.94	0.89	2.87	10189	1264	6	0	6	0	0	logfile
✔	7PMi	13535	2023-02-19	2021-09-02	3.3	4.20	3.27	3.2	0.014	1.17	3.0	0.07	15.30	0.01	1.306	5.04	0.09	0.2	99.8	0.0	-1.50	0.92	0.84	2.97	3.2	0.003	0.69	1.0	0.04	15.66	0.00	2.015	8.05	0.18	1.8	98.2	0.0	1.27	0.66	0.94	0.88	2.61	10189	1264	6	0	6	0	0	logfile

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