Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6U5o	20651	2023-08-19	2019-08-28	3.7	3.81	—	3.8	0.005	0.78	0.0	0.04	14.70	0.01	2.093	5.81	0.00	0.0	100.0	0.0	-4.22	0.65	0.75	1.93	3.8	0.004	0.65	0.0	0.04	16.90	0.00	1.877	10.11	0.21	8.1	91.9	0.0	-1.12	1.52	0.66	0.79	2.07	26316	1623	5	0	0	0	13339	logfile
✔	7URi	26713	2023-08-09	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	25.77	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.6	0.008	1.44	0.0	0.07	23.84	0.01	2.072	23.68	0.00	0.0	0.0	0.0	—	2.06	0.08	0.38	—	1905	0	1	90	0	0	0	logfile
✔	7Q66	13853	2023-08-09	2021-11-05	2.79	2.87	2.63	2.9	0.021	1.42	0.0	0.11	12.58	0.01	2.277	13.59	6.52	0.0	100.0	0.0	-4.18	0.63	0.84	3.82	2.9	0.004	0.75	0.0	0.04	16.09	0.00	2.208	12.61	6.92	0.8	99.2	0.0	-4.23	0.65	0.62	0.88	4.75	4807	682	22	0	0	0	0	logfile
✔	7YGD	33816	2023-08-10	2022-07-11	3.41	4.13	3.42	3.3	0.002	0.49	0.0	0.03	15.33	0.00	2.100	14.25	0.00	0.0	0.0	0.0	—	0.90	0.81	—	3.3	0.007	0.75	0.0	0.04	17.38	0.01	1.823	32.82	0.00	0.0	0.0	0.0	—	1.50	0.91	0.89	—	8313	0	3	389	6	0	0	logfile
✔	8BFB	16019	2023-08-09	2022-10-24	3.2	3.13	3.01	3.2	0.003	0.44	0.0	0.06	13.91	0.00	2.552	9.16	0.00	0.0	100.0	0.0	-3.20	0.49	0.83	5.20	3.2	0.008	0.62	0.0	0.05	17.53	0.00	2.364	6.10	0.00	2.8	97.2	0.0	-3.12	1.03	0.52	0.86	7.13	2860	380	10	0	0	0	0	logfile
✔	7YC8	33736	2023-08-10	2022-07-01	4.14	7.25	4.31	4.1	0.002	0.51	0.0	0.02	16.48	0.00	2.079	18.05	0.00	0.0	0.0	0.0	—	0.96	0.87	—	4.1	0.006	0.80	0.0	0.04	21.98	0.01	1.978	68.54	0.00	0.0	0.0	0.0	—	1.23	0.97	0.89	—	8335	0	1	388	1	0	0	logfile
✔	6oDJ	20021	2023-08-18	2019-03-26	3.5	3.75	—	3.7	0.009	1.50	0.0	0.07	11.32	0.01	2.438	2.03	0.00	0.0	0.0	0.0	—	0.81	0.81	—	3.7	0.012	1.73	0.0	0.06	7.96	0.00	2.090	10.56	0.00	0.0	0.0	0.0	—	0.60	0.82	0.83	—	25415	0	17	0	5083	0	0	logfile
✔	7TD6	25824	2023-08-09	2021-12-30	3.0	3.41	3.09	3.4	0.002	0.57	0.0	0.05	16.47	0.00	2.449	7.94	0.00	0.0	100.0	0.0	-3.11	0.42	0.76	2.95	3.4	0.005	0.89	0.0	0.05	18.65	0.00	2.234	13.38	3.53	9.9	90.1	0.0	-4.01	1.10	0.43	0.78	3.81	5575	690	5	0	0	0	0	logfile
✔	7YG8	33811	2023-08-10	2022-07-11	2.97	3.59	3.04	3.0	0.002	0.48	0.0	0.03	14.91	0.00	2.042	13.48	0.00	0.0	0.0	0.0	—	0.89	0.82	—	3.0	0.006	0.63	0.0	0.04	15.97	0.00	1.823	18.76	0.00	0.0	0.0	0.0	—	0.37	0.91	0.89	—	8440	0	3	395	5	0	0	logfile
✔	6WL0	21814	2023-08-12	2020-04-17	4.4	4.62	—	4.4	0.006	0.82	0.0	0.04	18.91	0.00	2.353	8.18	0.00	0.0	100.0	0.0	-5.48	0.79	0.88	—	4.4	0.005	0.96	0.0	0.04	14.65	0.00	2.062	21.77	0.18	0.1	99.9	0.0	0.14	1.67	0.79	0.86	—	11480	1476	41	0	0	0	0	logfile
✔	6XL6	22235	2023-08-09	2020-06-28	3.0	3.41	—	3.3	0.005	0.68	0.0	0.05	20.19	0.00	2.257	5.23	0.00	0.0	100.0	0.0	-1.93	0.76	0.83	2.94	3.3	0.003	0.53	0.0	0.04	21.18	0.00	2.275	6.47	2.65	1.3	98.7	0.0	0.64	1.38	0.74	0.83	2.39	5456	536	6	46	4	0	0	logfile
✔	7YCG	33738	2023-08-10	2022-07-01	3.18	4.71	3.37	3.5	0.002	0.50	0.0	0.03	14.85	0.00	1.893	15.83	0.00	0.0	0.0	0.0	—	0.94	0.84	—	3.5	0.007	0.66	0.0	0.04	15.89	0.00	1.846	33.51	0.00	0.0	0.0	0.0	—	0.32	0.95	0.89	—	8661	0	2	404	4	0	0	logfile
✔	8CL2	16710	2023-08-16	2023-02-16	3.45	3.69	3.44	3.6	0.004	0.82	0.0	0.05	12.07	0.01	2.192	3.59	0.00	0.0	100.0	0.0	-0.83	0.54	0.79	2.49	3.6	0.003	0.68	0.0	0.04	16.83	0.00	2.207	10.69	0.14	1.7	98.3	0.0	1.32	2.42	0.56	0.84	1.20	13335	1725	15	0	0	0	0	logfile
✔	7UR5	26705	2023-08-09	2022-04-21	2.6	2.89	2.82	2.9	0.008	1.48	0.0	0.11	25.09	0.01	2.204	2.44	0.00	0.0	0.0	0.0	—	0.05	0.58	—	2.9	0.005	0.83	0.0	0.04	20.54	0.01	2.027	14.87	0.00	0.0	0.0	0.0	—	1.86	0.08	0.65	—	5709	0	3	270	0	0	0	logfile
✔	7XD7	33138	2023-08-10	2022-03-26	3.02	3.40	—	3.1	0.003	0.61	0.0	0.04	14.03	0.00	1.736	0.77	0.00	0.0	0.0	0.0	—	0.90	0.86	—	3.1	0.007	0.66	0.0	0.04	15.12	0.00	1.878	8.19	0.00	0.0	0.0	0.0	—	2.01	0.92	0.92	—	8693	0	1	405	30	0	0	logfile
✔	7XD6	33137	2023-08-11	2022-03-26	2.84	3.25	2.83	3.0	0.005	0.74	0.0	0.04	15.28	0.00	1.975	1.30	0.00	0.0	0.0	0.0	—	0.88	0.86	—	3.0	0.005	0.66	0.0	0.04	16.14	0.00	1.883	7.41	0.00	0.0	0.0	0.0	—	1.32	0.88	0.89	—	9843	0	3	459	29	0	0	logfile
✔	7YGB	33814	2023-08-10	2022-07-11	2.62	3.15	2.70	2.9	0.007	0.52	0.0	0.03	14.46	0.00	2.079	13.50	0.00	0.0	0.0	0.0	—	0.88	0.84	—	2.9	0.007	0.63	0.0	0.04	14.92	0.00	1.835	13.73	0.00	0.0	0.0	0.0	—	0.87	0.90	0.91	—	8738	0	5	407	54	0	0	logfile
✔	6K9F	9948	2023-08-14	2019-06-15	3.7	7.50	4.15	7.2	0.002	0.45	0.0	0.03	11.87	0.00	2.356	5.29	0.00	0.0	100.0	0.0	-0.68	0.66	0.76	0.04	4.6	0.004	1.22	0.0	0.05	17.69	0.00	2.013	28.27	0.53	1.4	98.6	0.0	-0.68	3.70	0.67	0.84	0.35	8484	1044	12	0	0	0	0	logfile
✔	7EZ0	31385	2023-08-10	2021-06-01	3.14	3.26	—	3.2	0.003	0.56	0.0	0.03	14.43	0.00	1.804	2.25	0.00	0.0	0.0	0.0	—	0.74	0.79	—	3.2	0.005	0.67	0.0	0.04	15.53	0.00	1.862	8.10	0.00	0.0	0.0	0.0	—	1.91	0.76	0.86	—	8306	0	1	387	27	0	0	logfile
✔	6X5i	22051	2023-08-10	2020-05-26	4.3	4.27	—	4.0	0.060	2.79	0.0	0.16	29.93	0.00	2.206	29.57	0.00	0.0	0.0	0.0	—	0.70	0.70	—	4.0	0.011	1.53	0.0	0.13	24.62	0.00	1.571	57.36	0.00	0.0	0.0	0.0	—	3.30	0.69	0.74	—	4480	70	70	0	280	0	0	logfile

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