Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5W1R	8751	2023-02-25	2017-06-04	4.4	4.48	—	4.4	0.006	1.21	2.0	0.06	14.97	0.01	1.238	42.66	1.30	15.6	79.1	5.4	-5.31	0.66	0.69	—	4.4	0.003	0.91	0.0	0.04	13.29	0.01	2.114	13.00	0.04	9.3	89.9	0.7	-1.87	1.91	0.66	0.69	—	25559	3563	1	0	0	0	0	logfile
✔	5Li4	4052	2023-02-23	2016-07-14	4.2	5.13	—	4.0	0.053	3.06	114.0	0.34	14.44	0.02	0.111	93.07	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.4	0.004	1.03	0.0	0.05	13.74	0.01	2.093	29.26	0.00	14.4	84.4	1.2	-3.64	4.18	0.34	0.58	—	20070	2562	6	0	0	0	0	logfile
✔	5Y81	6816	2023-02-28	2017-08-18	4.7	4.77	—	4.6	0.012	1.24	3.0	0.06	11.53	0.01	1.581	41.26	14.19	15.5	79.2	5.3	-5.73	0.66	0.69	—	4.6	0.003	0.72	0.0	0.04	9.83	0.00	2.062	10.61	0.10	9.3	89.7	1.0	0.85	0.83	0.70	0.73	—	25723	4095	8	0	360	0	0	logfile
✔	6JXA	9892	2023-02-21	2019-04-23	4.3	4.65	—	4.2	0.017	1.81	3.0	0.10	9.08	0.01	1.926	29.72	2.04	12.2	79.3	8.5	-2.72	0.49	0.42	—	4.2	0.005	1.04	0.0	0.05	11.62	0.01	2.085	25.04	0.00	17.4	79.8	2.8	-2.41	0.95	0.65	0.59	—	14100	2244	1	0	0	0	0	logfile
✔	7WB5	32395	2023-02-17	2021-12-15	3.7	3.89	—	3.9	0.011	1.40	0.0	0.09	18.85	0.02	2.188	18.30	14.00	18.2	79.6	2.2	-4.90	0.61	0.78	2.04	3.8	0.003	0.78	0.0	0.04	17.38	0.01	2.181	16.88	0.57	9.0	91.0	0.0	-3.31	1.62	0.62	0.77	1.98	3256	408	4	0	3	0	0	logfile
✔	7C1D	30269	2023-02-16	2020-05-03	3.8	4.18	—	4.3	0.004	0.71	0.0	0.05	13.99	0.00	2.367	18.87	0.00	20.4	79.6	0.0	-6.46	0.34	0.74	3.47	6.5	0.003	0.63	0.0	0.05	14.86	0.00	2.265	16.18	2.08	14.6	85.4	0.0	-4.73	2.82	0.39	0.75	3.16	2034	306	6	0	0	0	0	logfile
✔	7WRQ	32735	2023-02-17	2022-01-27	3.6	4.08	3.17	3.8	0.011	1.28	1.0	0.07	14.49	0.02	2.357	1.04	1.06	19.9	79.6	0.5	-5.87	0.86	0.85	2.08	3.8	0.003	0.71	0.0	0.04	15.57	0.00	2.267	4.74	0.91	11.3	88.6	0.1	-3.69	0.59	0.86	0.86	2.13	6247	798	5	0	7	0	0	logfile
✔	3JD8	6640	2023-02-19	2016-05-01	4.43	4.58	—	4.4	0.015	1.54	5.0	0.13	16.74	0.02	1.335	78.07	11.82	11.9	79.7	8.4	-3.27	0.54	0.62	—	4.4	0.004	0.87	0.0	0.05	12.42	0.00	2.050	18.43	0.00	8.4	90.7	0.9	-0.63	1.77	0.57	0.72	—	8050	1133	7	0	25	0	0	logfile
✔	6oSJ	20183	2023-02-17	2019-05-01	2.8	2.81	—	2.8	0.011	1.13	0.0	0.07	13.69	0.00	2.227	10.71	0.00	18.6	79.7	1.7	-4.71	0.50	0.79	4.82	2.8	0.003	0.76	0.0	0.06	16.80	0.00	2.229	8.87	5.12	13.4	86.6	0.0	-3.90	1.17	0.49	0.79	4.11	4210	610	10	0	0	0	0	logfile
✔	7CAH	30331	2023-02-17	2020-06-08	3.9	4.13	—	4.0	0.005	0.92	0.0	0.05	13.68	0.01	2.137	18.79	0.00	19.9	79.8	0.3	-5.76	0.68	0.64	2.37	4.0	0.003	0.75	0.0	0.05	14.73	0.01	2.179	14.14	0.37	11.4	88.6	0.0	-3.11	0.60	0.70	0.63	2.02	2889	404	3	0	0	0	0	logfile
✔	8BG9	16027	2023-02-16	2022-10-27	3.5	3.74	2.80	4.2	0.008	1.46	0.0	0.09	14.96	0.01	2.484	12.17	12.50	17.1	80.0	2.9	-5.16	0.38	0.79	4.51	4.0	0.006	0.76	0.0	0.05	15.60	0.00	2.264	7.60	0.00	10.5	89.5	0.0	-4.03	0.99	0.39	0.81	5.60	1692	222	6	0	0	0	0	logfile
✔	7V4C	31707	2023-02-16	2021-08-12	3.3	2.93	—	3.4	0.008	0.75	0.0	0.06	12.47	0.00	2.305	12.50	0.00	20.0	80.0	0.0	-6.54	0.40	0.83	2.37	3.4	0.002	0.61	0.0	0.05	17.20	0.00	2.152	4.55	1.52	6.1	93.9	0.0	-4.30	2.19	0.40	0.82	3.23	1287	186	3	0	0	0	0	logfile
✔	6CET	7465	2023-02-21	2018-02-12	4.4	4.41	—	4.3	0.007	1.42	0.0	0.07	13.40	0.01	2.251	8.50	0.96	19.7	80.1	0.2	-5.52	0.67	0.62	—	4.3	0.004	0.94	0.0	0.05	14.01	0.01	2.112	19.33	0.06	18.7	81.3	0.0	-3.78	1.59	0.68	0.63	—	14012	1741	3	0	0	0	0	logfile
✔	6GTD	0062	2023-02-17	2018-06-18	4.24	4.28	—	3.9	0.009	1.26	0.0	0.08	21.74	0.01	2.138	13.01	0.00	19.8	80.2	0.0	-5.72	0.78	0.65	—	3.8	0.005	0.83	0.0	0.05	20.33	0.00	2.025	16.75	0.00	19.3	80.7	0.0	-3.20	0.98	0.79	0.67	—	6456	1269	4	66	0	0	0	logfile
✔	6TNG	10532	2023-02-18	2019-12-07	4.1	4.25	3.91	4.0	0.008	1.39	0.0	0.00	8.74	0.01	2.183	11.35	0.00	18.9	80.2	0.8	-5.16	0.75	0.70	—	4.0	0.004	0.85	0.0	0.00	6.39	0.00	2.200	10.87	0.00	22.8	77.1	0.1	-3.08	0.35	0.76	0.72	—	8240	2060	2	0	0	0	0	logfile
✔	6oF2	20040	2023-02-20	2019-03-28	2.9	2.77	—	3.7	0.006	1.00	0.0	0.05	14.63	0.01	2.062	8.80	1.02	17.7	80.2	2.2	-4.30	0.69	0.63	0.25	3.4	0.004	0.81	0.0	0.04	17.12	0.01	1.964	10.12	2.71	8.0	92.0	0.0	0.24	1.60	0.79	0.83	1.80	11062	1422	6	0	4	0	0	logfile
✔	7JMN	22397	2023-02-21	2020-08-02	3.58	3.99	—	3.8	0.004	0.83	0.0	0.05	14.64	0.01	2.115	11.04	0.07	19.3	80.2	0.6	-5.81	0.79	0.78	1.61	3.8	0.003	0.84	0.0	0.04	16.33	0.00	2.188	10.21	0.21	15.5	84.2	0.3	-3.53	1.24	0.78	0.77	1.31	13633	1756	5	0	52	0	0	logfile
✔	7X7N	33042	2023-02-25	2022-03-10	4.47	4.03	4.49	4.2	0.013	1.04	6.0	0.06	14.74	0.01	1.956	29.07	0.52	19.6	80.3	0.1	-5.63	0.73	0.77	—	4.1	0.004	0.78	6.0	0.05	14.24	0.00	1.262	15.16	0.00	10.0	90.0	0.0	-2.67	0.76	0.72	0.77	—	26493	3314	12	0	45	0	0	logfile
✔	6B19	7031	2023-02-17	2017-09-18	4.5	4.61	—	4.4	0.023	1.38	0.0	0.05	6.45	0.01	2.201	16.18	0.00	19.4	80.5	0.1	-5.73	0.74	0.63	—	4.4	0.003	0.83	0.0	0.04	12.79	0.00	1.943	28.55	0.00	25.7	74.3	0.0	-4.89	1.31	0.78	0.68	—	5699	907	4	38	0	0	409	logfile
✔	6WHX	21679	2023-02-24	2020-04-08	4.09	4.50	—	4.4	0.007	0.86	0.0	0.05	14.65	0.01	2.048	18.75	0.13	19.4	80.6	0.0	-5.50	0.59	0.70	—	4.4	0.003	0.67	0.0	0.04	13.65	0.00	2.152	9.88	0.00	8.3	91.7	0.0	-2.21	0.56	0.61	0.73	—	22925	3154	8	0	4	0	0	logfile

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