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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8H40 | 34476 | 2024-03-22 | 2022-10-09 | 3.6 | 4.14 | 3.56 | 3.3 | 0.059 | 3.51 | 163.0 | 0.18 | 20.66 | 0.02 | 0.727 | 175.67 | 4.55 | 35.8 | 60.4 | 3.8 | -7.43 | 0.85 | 0.79 | 0.76 | 3.3 | 0.004 | 0.94 | 0.0 | 0.05 | 20.72 | 0.01 | 1.897 | 22.17 | 3.19 | 11.8 | 87.6 | 0.6 | -2.66 | 1.95 | 0.87 | 0.81 | 0.98 | 34833 | 4130 | 11 | 120 | 0 | 0 | 0 | logfile |
✔ | 8H3V | 34475 | 2024-03-25 | 2022-10-09 | 4.5 | 4.64 | 4.91 | 4.5 | 0.030 | 2.79 | 84.0 | 0.14 | 20.27 | 0.02 | 0.972 | 180.47 | 7.38 | 33.8 | 60.7 | 5.5 | -7.34 | 0.74 | 0.61 | — | 4.5 | 0.004 | 0.99 | 0.0 | 0.05 | 18.15 | 0.01 | 2.080 | 24.14 | 0.02 | 14.9 | 84.4 | 0.7 | -3.78 | 1.37 | 0.77 | 0.68 | — | 46048 | 5325 | 15 | 208 | 0 | 0 | 0 | logfile |
✔ | 7L7H | 23212 | 2024-03-10 | 2020-12-28 | 4.0 | 2.39 | — | 4.0 | 0.008 | 1.47 | 0.0 | 0.08 | 15.10 | 0.01 | 2.199 | 13.87 | 3.53 | 36.3 | 63.7 | 0.0 | -6.00 | 0.47 | 0.60 | — | 4.0 | 0.005 | 0.96 | 0.0 | 0.06 | 16.99 | 0.00 | 2.068 | 20.90 | 16.08 | 31.5 | 68.5 | 0.0 | -5.06 | 0.73 | 0.51 | 0.66 | — | 2430 | 352 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J06 | 5185 | 2024-03-12 | 2011-04-26 | 3.3 | 2.88 | — | 3.5 | 0.011 | 2.34 | 441.0 | 0.15 | 21.60 | 0.01 | 1.607 | 79.64 | 14.71 | 21.1 | 65.4 | 13.5 | -7.24 | 0.56 | 0.80 | 1.90 | 3.2 | 0.005 | 0.99 | 6.0 | 0.05 | 21.31 | 0.01 | 1.530 | 17.41 | 7.20 | 8.1 | 90.0 | 1.9 | -2.56 | 1.23 | 0.56 | 0.79 | 1.87 | 62916 | 7595 | 98 | 147 | 0 | 0 | 0 | logfile |
✔ | 6oSM | 20186 | 2024-03-10 | 2019-05-01 | 3.4 | 3.31 | — | 3.4 | 0.012 | 1.45 | 0.0 | 0.09 | 14.06 | 0.00 | 2.183 | 28.91 | 14.88 | 34.5 | 65.5 | 0.0 | -5.34 | 0.46 | 0.74 | 2.68 | 3.4 | 0.007 | 1.20 | 0.0 | 0.07 | 15.46 | 0.00 | 2.162 | 23.54 | 11.71 | 25.7 | 74.3 | 0.0 | -5.10 | 1.14 | 0.45 | 0.75 | 3.04 | 4100 | 600 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RoW | 4975 | 2024-03-24 | 2019-05-13 | 4.5 | 4.52 | 4.16 | 4.2 | 0.016 | 1.50 | 0.0 | 0.07 | 14.46 | 0.01 | 1.848 | 49.61 | 0.00 | 30.3 | 68.7 | 1.0 | -6.95 | 0.81 | 0.74 | — | 4.2 | 0.004 | 0.68 | 0.0 | 0.04 | 13.65 | 0.00 | 1.945 | 13.20 | 0.05 | 14.3 | 85.5 | 0.1 | -2.60 | 1.48 | 0.82 | 0.73 | — | 43049 | 3129 | 7 | 0 | 0 | 0 | 20156 | logfile |
✔ | 3LoS | 5137 | 2024-03-12 | 2010-02-04 | 4.3 | 2.98 | — | 3.0 | 0.008 | 2.44 | 224.0 | 0.19 | 19.87 | 0.01 | 2.259 | 87.93 | 23.89 | 17.4 | 68.9 | 13.8 | -6.57 | 0.57 | 0.49 | — | 3.2 | 0.005 | 1.29 | 0.0 | 0.06 | 15.90 | 0.01 | 2.091 | 33.18 | 0.00 | 21.9 | 74.2 | 3.9 | -4.38 | 1.32 | 0.63 | 0.56 | — | 63712 | 8512 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KXY | 23067 | 2024-03-14 | 2020-12-05 | 4.4 | 4.55 | 4.44 | 4.5 | 0.004 | 0.82 | 0.0 | 0.05 | 15.13 | 0.01 | 2.197 | 19.28 | 7.18 | 26.0 | 69.8 | 4.2 | -5.90 | 0.63 | 0.60 | — | 4.5 | 0.004 | 0.83 | 0.0 | 0.05 | 14.57 | 0.01 | 2.058 | 24.98 | 0.00 | 17.3 | 82.7 | 0.1 | -4.74 | 0.61 | 0.63 | 0.61 | — | 9510 | 1181 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5YYS | 6859 | 2024-03-19 | 2017-12-11 | 4.2 | 4.57 | — | 4.1 | 0.016 | 2.27 | 0.0 | 0.10 | 15.30 | 0.01 | 2.201 | 22.76 | 2.34 | 27.3 | 70.1 | 2.6 | -5.98 | 0.85 | 0.71 | — | 4.1 | 0.004 | 1.19 | 0.0 | 0.06 | 12.69 | 0.01 | 2.105 | 31.38 | 0.00 | 22.1 | 77.4 | 0.5 | -3.75 | 1.68 | 0.87 | 0.73 | — | 24044 | 3244 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KiQ | 9997 | 2024-03-16 | 2019-07-19 | 3.62 | 3.66 | — | 3.8 | 0.035 | 3.74 | 145.0 | 0.27 | 19.81 | 0.04 | 2.201 | 12.20 | 14.75 | 18.6 | 70.7 | 10.7 | -6.77 | 0.58 | 0.71 | 1.68 | 3.5 | 0.004 | 0.80 | 0.0 | 0.04 | 17.66 | 0.01 | 1.970 | 12.46 | 4.68 | 12.1 | 87.3 | 0.6 | -2.78 | 1.14 | 0.63 | 0.75 | 1.04 | 15093 | 968 | 3 | 0 | 0 | 0 | 7444 | logfile |
✔ | 6Z7Q | 11112 | 2024-03-17 | 2020-06-01 | 3.8 | 4.10 | 3.58 | 4.0 | 0.006 | 0.77 | 0.0 | 0.05 | 14.47 | 0.00 | 2.176 | 21.13 | 0.00 | 28.6 | 70.7 | 0.7 | -6.49 | 0.73 | 0.82 | 1.75 | 4.0 | 0.004 | 0.86 | 0.0 | 0.05 | 17.09 | 0.00 | 2.153 | 18.93 | 4.81 | 15.5 | 84.5 | 0.0 | -4.15 | 1.20 | 0.75 | 0.82 | 1.24 | 16665 | 2080 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XYM | 33522 | 2024-03-16 | 2022-06-01 | 3.3 | 3.70 | 3.42 | 3.6 | 0.009 | 1.58 | 6.0 | 0.07 | 14.87 | 0.01 | 1.028 | 29.59 | 0.49 | 25.5 | 71.6 | 2.9 | -6.19 | 0.71 | 0.74 | 1.93 | 3.6 | 0.005 | 1.10 | 0.0 | 0.06 | 16.58 | 0.01 | 2.073 | 25.91 | 2.02 | 27.6 | 70.7 | 1.7 | -4.84 | 1.40 | 0.69 | 0.79 | 1.86 | 11436 | 1464 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6NEF | 9357 | 2024-03-21 | 2018-12-17 | 3.4 | 3.55 | — | 3.5 | 0.021 | 1.83 | 0.0 | 0.07 | 16.56 | 0.01 | 1.696 | 41.21 | 0.04 | 24.1 | 72.2 | 3.7 | -6.35 | 0.42 | 0.36 | 0.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29457 | 3663 | 9 | 0 | 63 | 0 | 0 | logfile |
✘ | 6JSi | 9882 | 2024-03-12 | 2019-04-08 | 4.7 | 4.70 | — | 4.6 | 0.007 | 1.48 | 0.0 | 0.06 | 15.33 | 0.01 | 2.231 | 10.68 | 2.42 | 23.2 | 72.3 | 4.5 | -6.05 | 0.64 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62820 | 5844 | 9 | 0 | 4044 | 0 | 0 | logfile |
✔ | 6VW2 | 21410 | 2024-03-10 | 2020-02-18 | 3.4 | 3.62 | — | 3.8 | 0.006 | 1.13 | 0.0 | 0.06 | 14.20 | 0.01 | 2.292 | 24.13 | 0.00 | 27.3 | 72.7 | 0.0 | -4.46 | 0.42 | 0.71 | 2.71 | 3.9 | 0.006 | 0.96 | 0.0 | 0.05 | 15.67 | 0.00 | 2.143 | 20.93 | 13.33 | 16.8 | 83.2 | 0.0 | -4.96 | 0.42 | 0.40 | 0.72 | 1.82 | 1800 | 240 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 5iMQ | 6584 | 2024-03-01 | 2016-03-06 | 3.8 | 3.95 | — | 3.9 | 0.012 | 1.41 | 0.0 | 0.07 | 26.36 | 0.01 | 1.006 | 63.05 | 4.55 | 16.6 | 72.8 | 10.6 | -4.61 | 0.71 | 0.65 | 0.92 | 3.9 | 0.006 | 0.92 | 2.0 | 0.05 | 25.31 | 0.01 | 1.725 | 25.39 | 7.38 | 18.5 | 79.1 | 2.4 | -3.66 | 0.78 | 0.82 | 0.80 | 0.46 | 153046 | 6640 | 56 | 4680 | 1 | 0 | 0 | logfile |
✔ | 8GRS | 34214 | 2024-03-10 | 2022-09-02 | 3.3 | 3.91 | 3.48 | 3.8 | 0.016 | 1.94 | 6.0 | 0.13 | 26.31 | 0.02 | 1.285 | 16.08 | 44.03 | 21.3 | 72.9 | 5.8 | -5.46 | 0.61 | 0.72 | 1.86 | 3.8 | 0.004 | 0.82 | 0.0 | 0.04 | 18.81 | 0.01 | 2.211 | 16.75 | 6.42 | 11.5 | 88.0 | 0.5 | -1.15 | 1.94 | 0.51 | 0.81 | 1.51 | 5148 | 626 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7YRR | 34065 | 2024-03-19 | 2022-08-10 | 4.3 | 4.40 | 4.25 | 4.2 | 0.013 | 2.13 | 5.0 | 0.11 | 22.39 | 0.01 | 1.874 | 15.92 | 26.25 | 21.4 | 73.0 | 5.6 | -5.95 | 0.67 | 0.46 | — | 4.2 | 0.014 | 0.93 | 0.0 | 0.04 | 14.50 | 0.01 | 1.870 | 36.32 | 0.13 | 18.5 | 80.8 | 0.7 | -4.57 | 1.26 | 0.70 | 0.53 | — | 24937 | 1697 | 4 | 0 | 0 | 0 | 11408 | logfile |
✔ | 7DWV | 30887 | 2024-03-10 | 2021-01-18 | 3.07 | 2.95 | — | 3.6 | 0.007 | 0.80 | 0.0 | 0.06 | 14.69 | 0.00 | 2.258 | 16.67 | 0.00 | 26.8 | 73.2 | 0.0 | -7.45 | 0.41 | 0.75 | 4.09 | 4.1 | 0.004 | 0.78 | 0.0 | 0.05 | 17.73 | 0.00 | 2.189 | 18.12 | 19.05 | 23.6 | 76.4 | 0.0 | -6.14 | 1.49 | 0.41 | 0.75 | 2.77 | 2064 | 258 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ASK | 11895 | 2024-03-15 | 2020-10-27 | 4.3 | 4.39 | — | 4.3 | 0.028 | 2.99 | 47.0 | 0.22 | 18.83 | 0.02 | 0.766 | 14.21 | 2.58 | 16.8 | 73.5 | 9.7 | -6.06 | 0.17 | 0.51 | — | 4.3 | 0.015 | 1.13 | 2.0 | 0.05 | 15.40 | 0.01 | 2.076 | 16.90 | 0.00 | 18.4 | 80.1 | 1.5 | -3.44 | 1.30 | 0.18 | 0.61 | — | 12285 | 1523 | 1 | 0 | 2 | 0 | 0 | logfile |