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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6TD6 | 10464 | 2023-07-08 | 2019-11-07 | 4.76 | 5.03 | — | 4.8 | 0.010 | 1.11 | 0.0 | 0.07 | 15.73 | 0.01 | 1.777 | 55.96 | 0.35 | 22.8 | 76.8 | 0.4 | -6.33 | 0.62 | 0.70 | — | 4.8 | 0.003 | 0.68 | 0.0 | 0.04 | 14.08 | 0.00 | 1.930 | 17.12 | 0.00 | 9.3 | 90.7 | 0.0 | -1.32 | 1.43 | 0.59 | 0.69 | — | 15680 | 982 | 4 | 0 | 3 | 0 | 7766 | logfile |
✔ | 6oF4 | 20042 | 2023-07-06 | 2019-03-28 | 3.2 | 2.71 | — | 3.6 | 0.010 | 1.19 | 0.0 | 0.06 | 15.12 | 0.01 | 2.091 | 11.76 | 2.54 | 19.6 | 76.8 | 3.5 | -4.99 | 0.79 | 0.82 | 1.96 | 3.7 | 0.004 | 0.76 | 0.0 | 0.04 | 16.53 | 0.01 | 2.143 | 7.58 | 0.68 | 8.9 | 91.0 | 0.1 | 0.42 | 1.31 | 0.78 | 0.81 | 1.76 | 10998 | 1422 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 4UY8 | 2773 | 2023-07-16 | 2014-08-29 | 3.8 | 4.07 | — | 4.1 | 0.010 | 1.50 | 8.0 | 0.07 | 15.49 | 0.01 | 0.879 | 12.34 | 11.16 | 16.3 | 76.9 | 6.8 | -5.04 | 0.53 | 0.64 | 0.36 | 4.0 | 0.003 | 0.59 | 0.0 | 0.03 | 17.01 | 0.00 | 1.696 | 54.58 | 0.93 | 13.2 | 84.5 | 2.3 | -3.45 | 1.60 | 0.58 | 0.80 | 1.11 | 92995 | 3468 | 47 | 3049 | 144 | 439 | 8 | logfile |
✔ | 8GRo | 34210 | 2023-07-05 | 2022-09-02 | 3.5 | 3.98 | 3.66 | 3.9 | 0.013 | 1.67 | 17.0 | 0.11 | 25.25 | 0.01 | 1.194 | 18.95 | 41.49 | 16.3 | 77.1 | 6.6 | -5.21 | 0.60 | 0.74 | 1.94 | 3.9 | 0.004 | 0.86 | 0.0 | 0.04 | 18.60 | 0.01 | 2.139 | 18.39 | 0.95 | 12.3 | 87.5 | 0.2 | -0.77 | 1.31 | 0.57 | 0.81 | 1.64 | 10624 | 1322 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WZR | 32912 | 2023-07-12 | 2022-02-19 | 4.7 | 4.70 | — | 4.4 | 0.008 | 1.21 | 3.0 | 0.06 | 7.95 | 0.01 | 2.197 | 7.80 | 0.00 | 21.6 | 77.2 | 1.2 | -4.58 | 0.76 | 0.65 | — | 4.4 | 0.002 | 0.67 | 0.0 | 0.04 | 4.72 | 0.00 | 2.151 | 1.89 | 0.00 | 11.3 | 88.4 | 0.3 | -0.14 | 1.59 | 0.76 | 0.69 | — | 27037 | 5440 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J7Z | 6057 | 2023-07-15 | 2014-08-27 | 3.9 | 3.80 | — | 3.9 | 0.009 | 1.42 | 5.0 | 0.09 | 16.03 | 0.01 | 1.426 | 11.65 | 10.91 | 16.3 | 77.2 | 6.5 | -5.00 | 0.75 | 0.70 | 0.71 | 3.8 | 0.007 | 0.95 | 0.0 | 0.05 | 16.34 | 0.01 | 1.992 | 19.79 | 1.72 | 15.0 | 83.0 | 2.0 | -3.38 | 1.87 | 0.79 | 0.80 | 0.94 | 90700 | 3453 | 36 | 2975 | 1 | 0 | 0 | logfile |
✔ | 6HV8 | 0287 | 2023-07-05 | 2018-10-10 | 4.4 | 4.51 | — | 4.4 | 0.009 | 1.62 | 2.0 | 0.08 | 10.20 | 0.01 | 1.472 | 8.97 | 1.31 | 22.1 | 77.3 | 0.6 | -4.84 | 0.74 | 0.72 | — | 4.4 | 0.003 | 0.84 | 0.0 | 0.05 | 12.78 | 0.00 | 2.083 | 14.58 | 0.00 | 14.2 | 85.8 | 0.0 | -2.84 | 1.02 | 0.74 | 0.71 | — | 9206 | 1184 | 2 | 0 | 2 | 0 | 0 | logfile |
✔ | 6i0Y | 0322 | 2023-07-16 | 2018-10-26 | 3.2 | 4.80 | — | 4.7 | 0.010 | 1.49 | 8.0 | 0.07 | 15.55 | 0.01 | 0.682 | 13.02 | 11.41 | 16.0 | 77.5 | 6.5 | -5.00 | 0.59 | 0.58 | 0.26 | 4.7 | 0.007 | 0.91 | 0.0 | 0.04 | 16.58 | 0.01 | 0.967 | 25.22 | 1.81 | 15.5 | 82.6 | 1.9 | -3.22 | 1.65 | 0.61 | 0.74 | 0.89 | 93619 | 3551 | 48 | 3049 | 144 | 439 | 0 | logfile |
✔ | 7BW8 | 30230 | 2023-07-04 | 2020-04-14 | 3.8 | 4.16 | 3.79 | 4.4 | 0.009 | 1.38 | 0.0 | 0.07 | 17.39 | 0.01 | 1.974 | 49.64 | 0.00 | 22.3 | 77.7 | 0.0 | -5.01 | 0.70 | 0.66 | 0.41 | 4.4 | 0.003 | 0.93 | 0.0 | 0.05 | 18.23 | 0.01 | 2.200 | 21.41 | 0.88 | 10.6 | 89.4 | 0.0 | -3.01 | 2.07 | 0.68 | 0.63 | 0.53 | 6021 | 737 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8GRN | 34209 | 2023-07-06 | 2022-09-02 | 2.5 | 3.22 | 2.91 | 3.2 | 0.033 | 3.22 | 177.0 | 0.26 | 23.86 | 0.02 | 1.568 | 20.38 | 36.57 | 14.8 | 77.8 | 7.4 | -5.62 | 0.54 | 0.70 | 2.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11602 | 1432 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 6WHR | 21673 | 2023-07-11 | 2020-04-08 | 3.99 | 4.51 | — | 4.3 | 0.015 | 1.23 | 0.0 | 0.07 | 14.89 | 0.01 | 1.968 | 30.82 | 2.94 | 21.2 | 78.0 | 0.8 | -5.90 | 0.69 | 0.73 | 1.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23370 | 3166 | 10 | 0 | 14 | 0 | 0 | logfile |
✔ | 7SWN | 25476 | 2023-07-03 | 2021-11-20 | 4.3 | 3.77 | — | 3.5 | 0.007 | 1.06 | 0.0 | 0.06 | 14.58 | 0.01 | 2.203 | 41.73 | 0.00 | 21.9 | 78.1 | 0.0 | -4.82 | 0.57 | 0.68 | — | 3.5 | 0.003 | 0.82 | 0.0 | 0.05 | 13.82 | 0.01 | 2.261 | 21.52 | 0.00 | 11.3 | 88.7 | 0.0 | -3.20 | 2.08 | 0.57 | 0.68 | — | 3283 | 422 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 4V91 | 2599 | 2023-07-09 | 2014-03-21 | 3.7 | 3.84 | — | 3.8 | 0.133 | 4.77 | 525.0 | 0.43 | 20.66 | 0.07 | 0.695 | 17.94 | 12.79 | 14.1 | 78.2 | 7.8 | -5.39 | 0.33 | 0.36 | 0.15 | 3.8 | 0.032 | 1.24 | 0.0 | 0.04 | 17.28 | 0.01 | 2.047 | 15.07 | 1.04 | 8.1 | 91.2 | 0.7 | -2.72 | 2.02 | 0.63 | 0.81 | 1.43 | 125665 | 6450 | 45 | 3482 | 0 | 0 | 0 | logfile |
✔ | 7N88 | 24233 | 2023-07-05 | 2021-06-14 | 3.7 | 3.90 | — | 3.9 | 0.008 | 1.04 | 0.0 | 0.05 | 15.40 | 0.01 | 1.680 | 28.91 | 0.81 | 21.4 | 78.3 | 0.2 | -6.39 | 0.74 | 0.73 | 1.71 | 3.9 | 0.004 | 0.84 | 0.0 | 0.05 | 16.61 | 0.01 | 1.920 | 18.60 | 0.81 | 13.5 | 86.5 | 0.0 | -3.78 | 1.20 | 0.73 | 0.71 | 1.51 | 9402 | 1220 | 2 | 0 | 4 | 0 | 0 | logfile |
✘ | 6H3i | 0133 | 2023-07-10 | 2018-07-18 | 3.5 | 3.59 | — | 3.5 | 0.009 | 0.92 | 0.0 | 0.05 | 10.08 | 0.01 | 2.012 | 39.59 | 0.40 | 21.4 | 78.4 | 0.2 | -5.64 | 0.78 | 0.86 | 4.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20599 | 2597 | 3 | 0 | 0 | 0 | 53 | logfile |
✔ | 7AST | 11904 | 2023-07-16 | 2020-10-28 | 4.0 | 3.84 | — | 3.6 | 0.016 | 1.10 | 1.0 | 0.06 | 15.36 | 0.01 | 1.913 | 32.62 | 0.00 | 20.8 | 78.6 | 0.6 | -4.78 | 0.61 | 0.46 | — | 3.5 | 0.016 | 0.95 | 0.0 | 0.05 | 17.52 | 0.01 | 2.125 | 25.76 | 0.29 | 16.7 | 83.0 | 0.3 | -3.63 | 1.41 | 0.64 | 0.50 | — | 34518 | 4365 | 17 | 0 | 36 | 0 | 0 | logfile |
✔ | 6SHS | 10204 | 2023-07-04 | 2019-08-08 | 4.4 | 4.36 | — | 4.3 | 0.009 | 1.02 | 0.0 | 0.06 | 12.04 | 0.00 | 2.341 | 25.68 | 0.00 | 21.1 | 78.9 | 0.0 | -5.87 | 0.69 | 0.62 | — | 4.4 | 0.002 | 0.64 | 0.0 | 0.05 | 12.90 | 0.00 | 2.248 | 6.00 | 0.00 | 16.4 | 83.6 | 0.0 | -5.26 | 1.68 | 0.73 | 0.71 | — | 7068 | 480 | 12 | 0 | 0 | 0 | 3408 | logfile |
✔ | 7V1N | 31628 | 2023-07-09 | 2021-08-05 | 3.2 | 3.33 | — | 3.2 | 0.013 | 1.21 | 4.0 | 0.07 | 19.76 | 0.01 | 1.973 | 28.52 | 16.75 | 20.1 | 78.9 | 1.0 | -5.88 | 0.65 | 0.73 | 1.68 | 3.2 | 0.003 | 0.70 | 0.0 | 0.05 | 18.12 | 0.00 | 2.097 | 12.66 | 0.43 | 11.0 | 88.8 | 0.2 | -2.89 | 0.64 | 0.65 | 0.74 | 1.83 | 19156 | 2403 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N64 | 24193 | 2023-07-04 | 2021-06-07 | 4.2 | 3.94 | — | 3.9 | 0.009 | 1.06 | 0.0 | 0.06 | 15.21 | 0.01 | 2.157 | 36.86 | 1.78 | 20.8 | 78.9 | 0.3 | -3.80 | 0.65 | 0.71 | — | 3.9 | 0.005 | 0.83 | 0.0 | 0.05 | 13.92 | 0.01 | 2.089 | 23.18 | 0.13 | 14.5 | 85.5 | 0.0 | -2.77 | 0.52 | 0.64 | 0.69 | — | 7189 | 906 | 7 | 0 | 7 | 0 | 0 | logfile |
✔ | 7LV0 | 23528 | 2023-07-22 | 2021-02-23 | 3.2 | 3.59 | — | 3.2 | 0.012 | 1.25 | 0.0 | 0.10 | 15.70 | 0.02 | 1.414 | 29.31 | 3.83 | 19.0 | 79.0 | 2.0 | -4.79 | 0.81 | 0.82 | 1.87 | 3.2 | 0.004 | 0.71 | 0.0 | 0.04 | 16.41 | 0.01 | 2.025 | 16.84 | 0.98 | 13.7 | 86.2 | 0.1 | -2.71 | 0.50 | 0.81 | 0.83 | 1.17 | 147330 | 5851 | 60 | 4734 | 0 | 0 | 0 | logfile |