Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6TD6	10464	2023-07-08	2019-11-07	4.76	5.03	—	4.8	0.010	1.11	0.0	0.07	15.73	0.01	1.777	55.96	0.35	22.8	76.8	0.4	-6.33	0.62	0.70	—	4.8	0.003	0.68	0.0	0.04	14.08	0.00	1.930	17.12	0.00	9.3	90.7	0.0	-1.32	1.43	0.59	0.69	—	15680	982	4	0	3	0	7766	logfile
✔	6oF4	20042	2023-07-06	2019-03-28	3.2	2.71	—	3.6	0.010	1.19	0.0	0.06	15.12	0.01	2.091	11.76	2.54	19.6	76.8	3.5	-4.99	0.79	0.82	1.96	3.7	0.004	0.76	0.0	0.04	16.53	0.01	2.143	7.58	0.68	8.9	91.0	0.1	0.42	1.31	0.78	0.81	1.76	10998	1422	4	0	0	0	0	logfile
✔	4UY8	2773	2023-07-16	2014-08-29	3.8	4.07	—	4.1	0.010	1.50	8.0	0.07	15.49	0.01	0.879	12.34	11.16	16.3	76.9	6.8	-5.04	0.53	0.64	0.36	4.0	0.003	0.59	0.0	0.03	17.01	0.00	1.696	54.58	0.93	13.2	84.5	2.3	-3.45	1.60	0.58	0.80	1.11	92995	3468	47	3049	144	439	8	logfile
✔	8GRo	34210	2023-07-05	2022-09-02	3.5	3.98	3.66	3.9	0.013	1.67	17.0	0.11	25.25	0.01	1.194	18.95	41.49	16.3	77.1	6.6	-5.21	0.60	0.74	1.94	3.9	0.004	0.86	0.0	0.04	18.60	0.01	2.139	18.39	0.95	12.3	87.5	0.2	-0.77	1.31	0.57	0.81	1.64	10624	1322	2	0	0	0	0	logfile
✔	7WZR	32912	2023-07-12	2022-02-19	4.7	4.70	—	4.4	0.008	1.21	3.0	0.06	7.95	0.01	2.197	7.80	0.00	21.6	77.2	1.2	-4.58	0.76	0.65	—	4.4	0.002	0.67	0.0	0.04	4.72	0.00	2.151	1.89	0.00	11.3	88.4	0.3	-0.14	1.59	0.76	0.69	—	27037	5440	4	0	0	0	0	logfile
✔	3J7Z	6057	2023-07-15	2014-08-27	3.9	3.80	—	3.9	0.009	1.42	5.0	0.09	16.03	0.01	1.426	11.65	10.91	16.3	77.2	6.5	-5.00	0.75	0.70	0.71	3.8	0.007	0.95	0.0	0.05	16.34	0.01	1.992	19.79	1.72	15.0	83.0	2.0	-3.38	1.87	0.79	0.80	0.94	90700	3453	36	2975	1	0	0	logfile
✔	6HV8	0287	2023-07-05	2018-10-10	4.4	4.51	—	4.4	0.009	1.62	2.0	0.08	10.20	0.01	1.472	8.97	1.31	22.1	77.3	0.6	-4.84	0.74	0.72	—	4.4	0.003	0.84	0.0	0.05	12.78	0.00	2.083	14.58	0.00	14.2	85.8	0.0	-2.84	1.02	0.74	0.71	—	9206	1184	2	0	2	0	0	logfile
✔	6i0Y	0322	2023-07-16	2018-10-26	3.2	4.80	—	4.7	0.010	1.49	8.0	0.07	15.55	0.01	0.682	13.02	11.41	16.0	77.5	6.5	-5.00	0.59	0.58	0.26	4.7	0.007	0.91	0.0	0.04	16.58	0.01	0.967	25.22	1.81	15.5	82.6	1.9	-3.22	1.65	0.61	0.74	0.89	93619	3551	48	3049	144	439	0	logfile
✔	7BW8	30230	2023-07-04	2020-04-14	3.8	4.16	3.79	4.4	0.009	1.38	0.0	0.07	17.39	0.01	1.974	49.64	0.00	22.3	77.7	0.0	-5.01	0.70	0.66	0.41	4.4	0.003	0.93	0.0	0.05	18.23	0.01	2.200	21.41	0.88	10.6	89.4	0.0	-3.01	2.07	0.68	0.63	0.53	6021	737	3	0	0	0	0	logfile
✘	8GRN	34209	2023-07-06	2022-09-02	2.5	3.22	2.91	3.2	0.033	3.22	177.0	0.26	23.86	0.02	1.568	20.38	36.57	14.8	77.8	7.4	-5.62	0.54	0.70	2.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11602	1432	4	0	2	0	0	logfile
✘	6WHR	21673	2023-07-11	2020-04-08	3.99	4.51	—	4.3	0.015	1.23	0.0	0.07	14.89	0.01	1.968	30.82	2.94	21.2	78.0	0.8	-5.90	0.69	0.73	1.29	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23370	3166	10	0	14	0	0	logfile
✔	7SWN	25476	2023-07-03	2021-11-20	4.3	3.77	—	3.5	0.007	1.06	0.0	0.06	14.58	0.01	2.203	41.73	0.00	21.9	78.1	0.0	-4.82	0.57	0.68	—	3.5	0.003	0.82	0.0	0.05	13.82	0.01	2.261	21.52	0.00	11.3	88.7	0.0	-3.20	2.08	0.57	0.68	—	3283	422	3	0	0	0	0	logfile
✔	4V91	2599	2023-07-09	2014-03-21	3.7	3.84	—	3.8	0.133	4.77	525.0	0.43	20.66	0.07	0.695	17.94	12.79	14.1	78.2	7.8	-5.39	0.33	0.36	0.15	3.8	0.032	1.24	0.0	0.04	17.28	0.01	2.047	15.07	1.04	8.1	91.2	0.7	-2.72	2.02	0.63	0.81	1.43	125665	6450	45	3482	0	0	0	logfile
✔	7N88	24233	2023-07-05	2021-06-14	3.7	3.90	—	3.9	0.008	1.04	0.0	0.05	15.40	0.01	1.680	28.91	0.81	21.4	78.3	0.2	-6.39	0.74	0.73	1.71	3.9	0.004	0.84	0.0	0.05	16.61	0.01	1.920	18.60	0.81	13.5	86.5	0.0	-3.78	1.20	0.73	0.71	1.51	9402	1220	2	0	4	0	0	logfile
✘	6H3i	0133	2023-07-10	2018-07-18	3.5	3.59	—	3.5	0.009	0.92	0.0	0.05	10.08	0.01	2.012	39.59	0.40	21.4	78.4	0.2	-5.64	0.78	0.86	4.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20599	2597	3	0	0	0	53	logfile
✔	7AST	11904	2023-07-16	2020-10-28	4.0	3.84	—	3.6	0.016	1.10	1.0	0.06	15.36	0.01	1.913	32.62	0.00	20.8	78.6	0.6	-4.78	0.61	0.46	—	3.5	0.016	0.95	0.0	0.05	17.52	0.01	2.125	25.76	0.29	16.7	83.0	0.3	-3.63	1.41	0.64	0.50	—	34518	4365	17	0	36	0	0	logfile
✔	6SHS	10204	2023-07-04	2019-08-08	4.4	4.36	—	4.3	0.009	1.02	0.0	0.06	12.04	0.00	2.341	25.68	0.00	21.1	78.9	0.0	-5.87	0.69	0.62	—	4.4	0.002	0.64	0.0	0.05	12.90	0.00	2.248	6.00	0.00	16.4	83.6	0.0	-5.26	1.68	0.73	0.71	—	7068	480	12	0	0	0	3408	logfile
✔	7V1N	31628	2023-07-09	2021-08-05	3.2	3.33	—	3.2	0.013	1.21	4.0	0.07	19.76	0.01	1.973	28.52	16.75	20.1	78.9	1.0	-5.88	0.65	0.73	1.68	3.2	0.003	0.70	0.0	0.05	18.12	0.00	2.097	12.66	0.43	11.0	88.8	0.2	-2.89	0.64	0.65	0.74	1.83	19156	2403	2	0	0	0	0	logfile
✔	7N64	24193	2023-07-04	2021-06-07	4.2	3.94	—	3.9	0.009	1.06	0.0	0.06	15.21	0.01	2.157	36.86	1.78	20.8	78.9	0.3	-3.80	0.65	0.71	—	3.9	0.005	0.83	0.0	0.05	13.92	0.01	2.089	23.18	0.13	14.5	85.5	0.0	-2.77	0.52	0.64	0.69	—	7189	906	7	0	7	0	0	logfile
✔	7LV0	23528	2023-07-22	2021-02-23	3.2	3.59	—	3.2	0.012	1.25	0.0	0.10	15.70	0.02	1.414	29.31	3.83	19.0	79.0	2.0	-4.79	0.81	0.82	1.87	3.2	0.004	0.71	0.0	0.04	16.41	0.01	2.025	16.84	0.98	13.7	86.2	0.1	-2.71	0.50	0.81	0.83	1.17	147330	5851	60	4734	0	0	0	logfile

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