Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7VAV	31866	2023-02-27	2021-08-30	2.8	2.66	3.31	3.2	0.002	0.49	0.0	0.04	13.26	0.00	2.035	3.96	0.00	1.5	98.5	0.0	1.80	0.63	0.80	2.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29520	3787	14	0	4	0	0	logfile
✔	7BJ2	12193	2023-02-22	2021-01-13	3.0	3.64	3.01	3.2	0.003	0.62	0.0	0.04	14.87	0.00	2.246	12.91	0.00	4.0	96.0	0.0	0.20	0.72	0.80	2.36	3.2	0.007	0.70	0.0	0.04	16.76	0.00	2.230	13.68	1.03	5.9	94.1	0.0	-0.07	0.53	0.74	0.91	2.91	58552	7956	26	0	0	0	0	logfile
✔	7K1S	22629	2023-02-21	2020-09-08	3.9	4.13	—	4.1	0.006	0.89	0.0	0.06	14.28	0.01	1.647	15.42	0.38	2.1	97.9	0.0	-2.61	0.73	0.73	1.66	4.1	0.003	0.63	0.0	0.04	16.29	0.00	2.120	10.52	0.38	3.9	96.1	0.0	-0.54	1.26	0.76	0.76	1.39	14409	1752	9	0	21	0	0	logfile
✔	7VAR	31860	2023-02-27	2021-08-30	2.9	2.76	2.90	2.9	0.003	0.56	1.0	0.04	13.21	0.00	2.038	2.97	0.06	1.2	98.8	0.0	1.46	0.67	0.85	3.73	2.8	0.005	0.63	0.0	0.05	16.78	0.01	1.929	5.28	1.91	2.4	97.6	0.0	0.60	1.04	0.73	0.90	3.69	29520	3787	14	0	4	0	0	logfile
✔	7ZTD	14958	2023-02-25	2022-05-09	4.6	4.11	4.55	4.3	0.007	1.04	0.0	0.06	15.69	0.01	2.097	8.15	0.00	5.4	94.6	0.0	-2.32	0.70	0.80	—	4.4	0.003	0.68	0.0	0.04	13.92	0.00	2.049	9.84	0.00	4.9	95.1	0.0	0.37	10.50	0.68	0.78	—	25740	2928	20	0	548	0	0	logfile
✔	6VXX	21452	2023-02-24	2020-02-25	2.8	3.32	—	3.2	0.016	1.35	0.0	0.09	10.67	0.01	2.389	0.81	0.23	2.4	97.6	0.0	0.27	0.73	0.75	3.36	3.2	0.004	0.62	0.0	0.05	14.44	0.00	2.179	7.15	2.31	3.3	96.7	0.0	0.15	0.69	0.72	0.80	3.07	23694	2916	21	0	63	0	0	logfile
✔	8E98	27959	2023-02-22	2022-08-26	3.75	4.03	3.75	3.8	0.011	1.07	1.0	0.05	15.32	0.01	2.155	6.38	0.15	7.9	92.1	0.0	-1.29	0.79	0.76	1.70	3.8	0.003	0.68	0.0	0.05	15.34	0.00	2.189	6.97	0.29	7.7	92.3	0.1	-0.70	0.44	0.80	0.77	1.61	17208	2583	11	0	18	0	0	logfile
✔	8E93	27954	2023-02-22	2022-08-26	3.71	4.07	3.71	4.0	0.004	0.81	4.0	0.05	15.32	0.01	2.066	8.34	0.65	8.7	91.3	0.0	-2.88	0.64	0.81	2.05	4.0	0.004	0.73	0.0	0.04	15.69	0.00	2.183	8.24	0.84	9.7	90.3	0.0	-1.72	1.27	0.66	0.83	2.09	16664	2320	11	0	18	0	0	logfile
✔	7oNU	13002	2023-02-21	2021-05-26	3.0	3.11	2.88	3.1	0.005	0.58	0.0	0.04	13.96	0.01	1.890	4.49	0.07	2.4	97.6	0.0	0.53	0.74	0.81	4.05	3.1	0.002	0.52	0.0	0.04	16.21	0.00	2.061	5.61	0.97	1.7	98.3	0.0	1.46	0.40	0.76	0.88	3.23	15083	1763	12	66	6	0	0	logfile
✔	6VEN	21157	2023-02-24	2020-01-02	3.37	3.59	3.32	3.4	0.004	0.69	0.0	0.04	23.33	0.01	2.184	9.92	0.05	6.0	94.0	0.0	-3.46	0.84	0.85	1.86	3.4	0.003	0.61	0.0	0.04	23.70	0.00	2.145	10.49	0.31	3.9	96.1	0.0	-0.70	1.21	0.84	0.86	1.58	24028	2271	19	292	2	0	0	logfile
✔	7T8C	25744	2023-02-26	2021-12-16	4.5	3.21	4.51	4.6	0.001	0.42	0.0	0.04	7.59	0.00	2.347	5.08	0.41	3.6	96.4	0.0	0.76	0.63	0.54	—	4.2	0.002	0.64	0.0	0.04	10.96	0.00	2.130	10.96	0.00	4.6	95.4	0.0	0.62	1.08	0.66	0.61	—	28952	3626	7	0	0	0	0	logfile
✘	7W92	32359	2023-02-25	2021-12-09	3.1	2.79	—	3.3	0.003	0.67	0.0	0.05	13.05	0.01	2.306	2.89	0.11	3.7	96.3	0.0	-4.34	0.80	0.76	2.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25071	3206	3	0	0	0	0	logfile
✔	7VAT	31863	2023-02-27	2021-08-30	3.2	2.73	3.10	3.1	0.003	0.53	0.0	0.04	13.31	0.00	1.997	3.69	0.00	1.8	98.2	0.0	1.37	0.63	0.83	3.27	3.0	0.006	0.68	0.0	0.05	16.22	0.01	2.035	6.37	0.32	3.4	96.6	0.0	0.35	0.65	0.69	0.87	3.15	29520	3787	14	0	4	0	0	logfile
✔	6WXL	21961	2023-02-22	2020-05-11	2.76	2.33	2.78	2.9	0.005	0.70	0.0	0.05	14.09	0.01	2.281	2.90	0.16	3.2	96.8	0.0	-3.74	0.63	0.77	3.57	2.9	0.003	0.56	0.0	0.04	16.71	0.00	2.130	6.04	1.58	2.8	97.2	0.0	-1.07	1.10	0.68	0.81	3.48	17016	2175	18	0	9	0	0	logfile
✔	6XiT	22200	2023-02-23	2020-06-21	3.3	2.22	—	3.5	0.010	0.97	0.0	0.06	14.19	0.01	1.894	10.11	0.74	4.0	96.0	0.0	-3.79	0.65	0.73	3.11	3.5	0.002	0.58	0.0	0.04	16.42	0.00	2.188	11.97	0.37	2.5	97.5	0.0	0.40	1.12	0.69	0.81	2.04	10403	1308	8	0	7	0	0	logfile
✔	7UY6	26865	2023-02-22	2022-05-06	2.9	2.49	2.94	3.0	0.002	0.44	0.0	0.04	15.88	0.00	2.215	4.00	0.06	1.7	98.3	0.0	1.19	0.70	0.81	3.09	2.9	0.003	0.52	0.0	0.04	17.90	0.00	2.205	5.26	1.63	2.2	97.8	0.1	1.20	1.19	0.70	0.83	2.85	18746	1847	9	170	1	0	0	logfile
✔	6N9V	0380	2023-02-23	2018-12-04	4.0	4.06	—	4.0	0.005	0.82	0.0	0.05	13.72	0.01	2.125	2.60	0.41	3.8	96.2	0.0	-4.08	0.76	0.82	—	4.0	0.003	0.65	0.0	0.04	16.77	0.00	1.938	9.10	0.36	3.6	96.4	0.0	-1.05	1.94	0.78	0.85	—	21526	2651	15	33	14	0	0	logfile
✔	8CSU	26971	2023-02-27	2022-05-13	3.03	2.74	3.02	2.9	0.004	0.64	1.0	0.39	15.54	0.00	1.964	2.56	0.02	1.5	98.5	0.0	1.16	0.69	0.77	2.72	2.8	0.005	0.80	0.0	0.12	16.42	0.00	1.905	6.72	0.17	2.3	97.7	0.0	1.33	0.42	0.70	0.80	2.45	68661	6119	40	882	38	0	0	logfile
✔	6VRK	21369	2023-02-17	2020-02-07	4.1	4.22	4.47	4.2	0.003	0.61	0.0	0.04	13.76	0.00	2.245	10.65	0.00	6.5	93.5	0.0	-3.10	0.47	0.69	—	4.2	0.003	0.68	0.0	0.04	13.78	0.00	2.130	14.83	0.00	7.0	93.0	0.0	-1.39	1.03	0.47	0.69	—	6141	764	4	0	4	0	0	logfile
✔	7ADo	11732	2023-02-22	2020-09-15	3.39	4.05	3.45	3.8	0.008	0.96	0.0	0.05	15.83	0.01	1.890	6.60	0.11	3.0	97.0	0.0	-4.86	0.78	0.82	2.95	3.8	0.003	0.74	0.0	0.04	16.57	0.00	2.067	8.95	0.55	10.1	89.9	0.0	-1.20	1.35	0.78	0.85	2.10	16845	2069	15	0	25	0	0	logfile

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