Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TU5	26126	2023-07-17	2022-02-02	2.1	1.97	2.06	1.8	0.009	0.85	6.0	0.06	15.88	0.01	1.910	4.33	1.54	1.4	98.6	0.0	0.64	0.84	0.82	4.27	1.7	0.006	0.58	0.0	0.04	16.46	0.00	1.927	5.68	2.06	1.7	98.3	0.0	1.28	0.78	0.87	0.87	5.20	19656	2574	18	0	6	6	0	logfile
✔	6LXV	30007	2023-07-04	2020-02-12	2.1	2.18	—	2.2	0.025	1.66	0.0	0.12	16.07	0.01	2.196	2.01	2.81	3.9	95.9	0.1	-1.79	0.78	0.91	6.69	2.2	0.002	0.57	0.0	0.04	16.46	0.00	2.149	4.16	0.92	2.3	97.7	0.0	1.03	0.92	0.79	0.91	6.13	54924	6448	24	0	16	2967	0	logfile
✔	8FVW	29494	2023-07-12	2023-01-19	2.1	2.22	2.16	2.2	0.004	0.61	0.0	0.04	14.45	0.00	1.974	8.97	0.07	1.9	98.1	0.0	0.42	0.72	0.88	4.32	2.2	0.003	0.54	0.0	0.04	16.71	0.00	1.928	7.87	0.59	2.2	97.8	0.0	0.56	0.36	0.73	0.89	4.20	26108	3165	17	52	5	225	0	logfile
✔	8DBE	27281	2023-07-07	2022-06-14	2.1	2.18	2.26	2.2	0.014	0.99	0.0	0.05	17.66	0.05	1.867	9.20	3.05	4.1	95.9	0.0	0.97	0.73	0.90	6.43	2.2	0.003	1.76	0.0	0.05	17.32	0.00	1.850	6.81	1.87	2.7	97.3	0.0	0.27	0.34	0.74	0.91	6.36	14982	1896	18	0	30	42	0	logfile
✔	7o6E	12738	2023-07-16	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.49	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	1.6	0.003	0.47	0.0	0.03	18.14	0.00	2.203	3.42	0.38	0.7	99.3	0.0	4.41	0.27	0.88	0.90	5.26	35304	4248	48	0	0	1392	0	logfile
✔	7QEW	13943	2023-07-05	2021-12-03	2.1	2.62	—	2.2	0.005	0.86	0.0	0.03	11.15	0.00	2.191	3.73	2.18	3.3	96.7	0.0	1.32	0.78	0.89	4.62	2.3	0.003	0.66	0.0	0.04	14.43	0.00	2.188	5.93	1.19	3.0	97.0	0.0	2.91	1.06	0.79	0.92	3.35	9702	1128	18	0	30	234	0	logfile
✔	8DQX	27663	2023-07-18	2022-07-20	2.1	2.94	2.16	2.7	0.008	0.68	0.0	0.04	17.17	0.00	1.878	4.91	1.26	2.0	98.0	0.0	1.11	0.79	0.75	4.56	2.7	0.004	0.56	0.0	0.04	16.99	0.00	1.678	4.23	1.13	1.5	98.5	0.0	1.80	0.67	0.81	0.89	4.48	43173	2598	26	27	8	866	21143	logfile
✔	8DBK	27287	2023-07-07	2022-06-14	2.1	2.15	2.19	2.1	0.012	1.13	2.0	0.06	18.10	0.04	1.760	5.45	1.07	3.9	96.0	0.1	0.54	0.71	0.86	6.31	2.1	0.003	1.50	0.0	0.05	16.92	0.00	1.840	5.62	1.52	3.5	96.5	0.0	0.65	0.40	0.72	0.90	6.08	14612	1868	18	0	30	12	0	logfile
✔	7SCA	25031	2023-07-04	2021-09-27	2.1	2.23	2.15	2.2	0.011	1.14	7.0	0.07	15.33	0.01	2.057	5.44	0.78	1.0	99.0	0.0	2.17	0.79	0.85	5.74	2.2	0.002	0.55	0.0	0.04	16.60	0.00	2.121	8.28	0.87	0.9	99.1	0.0	2.87	1.09	0.79	0.85	5.28	55437	6836	116	0	54	1325	0	logfile
✔	8ABL	15325	2023-07-14	2022-07-04	2.1	2.00	2.04	2.0	0.010	1.69	34.0	0.11	17.90	0.01	2.060	2.82	4.41	2.2	97.8	0.0	-0.94	0.73	0.90	6.29	2.0	0.003	0.62	0.0	0.04	17.53	0.00	2.197	4.21	1.15	1.4	98.6	0.0	1.94	1.31	0.74	0.90	5.69	31660	3878	33	0	32	0	0	logfile
✔	8BC3	15961	2023-07-08	2022-10-14	2.1	2.00	2.14	2.2	0.014	2.07	0.0	0.11	17.99	0.02	2.310	1.34	11.95	3.3	96.7	0.0	-4.28	0.71	0.83	5.67	2.1	0.002	0.54	0.0	0.04	15.44	0.00	2.168	4.01	0.63	0.6	99.4	0.0	1.85	0.51	0.76	0.87	5.99	16880	2170	30	0	10	500	0	logfile
✔	7PBW	13307	2023-07-05	2021-08-02	2.1	1.98	—	2.1	0.009	0.99	0.0	0.05	12.27	0.01	2.243	2.93	0.00	0.0	100.0	0.0	3.14	0.78	0.90	7.90	2.1	0.004	0.76	0.0	0.04	14.47	0.01	2.150	7.99	0.00	0.0	100.0	0.0	4.46	0.28	0.77	0.90	7.32	9500	873	54	0	81	230	0	logfile
✔	6XZ7	10655	2023-07-16	2020-02-03	2.1	2.05	2.12	2.1	0.010	0.84	1.0	0.05	14.69	0.04	1.564	6.31	3.26	2.8	96.8	0.4	-2.20	0.41	0.69	5.50	2.1	0.002	0.73	0.0	0.03	14.89	0.01	1.829	6.68	2.07	2.0	97.9	0.1	0.41	0.93	0.71	0.89	5.12	94915	3351	45	3169	179	528	0	logfile
✔	7QQ3	14121	2023-07-15	2022-01-06	2.1	1.65	2.18	1.9	0.008	0.76	5.0	0.05	14.94	0.02	1.832	2.70	4.22	3.6	96.0	0.4	-0.31	0.50	0.61	3.73	1.9	0.006	1.10	4.0	0.05	15.30	0.01	1.747	6.99	2.69	3.9	95.9	0.2	-0.64	1.23	0.64	0.70	4.15	87594	2903	35	3016	154	28	0	logfile
✔	7SC8	25029	2023-07-04	2021-09-27	2.1	2.19	2.13	1.9	0.008	1.12	10.0	0.07	15.00	0.01	2.102	5.20	0.38	1.0	99.0	0.0	2.13	0.82	0.79	4.35	1.9	0.004	0.57	0.0	0.04	16.48	0.00	2.130	8.45	0.93	1.1	98.9	0.0	2.82	0.36	0.86	0.87	4.19	56784	6836	116	0	54	2672	0	logfile
✔	8FUZ	29482	2023-07-11	2023-01-18	2.1	2.08	2.21	2.1	0.007	0.86	0.0	0.05	17.81	0.01	2.232	4.59	1.17	2.1	97.9	0.0	0.92	0.78	0.91	5.73	2.1	0.003	0.56	0.0	0.04	17.79	0.00	2.228	3.17	1.53	1.6	98.4	0.0	0.75	0.34	0.77	0.91	5.53	24008	3120	16	0	16	0	0	logfile
✔	8DQW	27662	2023-07-19	2022-07-20	2.1	2.86	2.16	2.6	0.007	0.55	0.0	0.04	17.92	0.00	1.761	3.31	0.44	1.6	98.4	0.0	2.35	0.77	0.72	3.64	2.6	0.004	0.55	0.0	0.04	17.69	0.00	1.681	3.77	1.23	1.6	98.4	0.0	2.11	2.60	0.83	0.89	3.94	46565	2802	25	36	8	429	22936	logfile
✔	6PXM	20521	2023-07-15	2019-07-26	2.1	2.33	2.32	2.4	0.008	0.71	0.0	0.04	16.03	0.00	2.392	1.60	0.00	0.6	99.4	0.0	-3.44	0.79	0.89	5.35	2.3	0.002	0.43	0.0	0.03	17.64	0.00	2.214	4.08	0.03	1.8	98.2	0.0	5.31	1.48	0.79	0.90	3.81	32736	4080	24	0	0	0	0	logfile
✘	7SQ9	25380	2023-07-08	2021-11-04	2.11	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15810	1876	16	0	18	16	0	logfile
✔	8FNV	29327	2023-07-12	2022-12-28	2.11	2.24	2.15	2.2	0.007	1.36	12.0	0.07	18.52	0.02	2.014	8.59	3.84	5.7	93.5	0.8	0.03	0.71	0.82	3.84	2.2	0.003	0.62	0.0	0.04	18.06	0.00	2.067	8.88	1.54	5.2	94.2	0.5	1.28	0.48	0.74	0.87	4.18	74928	9237	24	0	12	0	0	logfile

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