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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7TU5 | 26126 | 2023-07-17 | 2022-02-02 | 2.1 | 1.97 | 2.06 | 1.8 | 0.009 | 0.85 | 6.0 | 0.06 | 15.88 | 0.01 | 1.910 | 4.33 | 1.54 | 1.4 | 98.6 | 0.0 | 0.64 | 0.84 | 0.82 | 4.27 | 1.7 | 0.006 | 0.58 | 0.0 | 0.04 | 16.46 | 0.00 | 1.927 | 5.68 | 2.06 | 1.7 | 98.3 | 0.0 | 1.28 | 0.78 | 0.87 | 0.87 | 5.20 | 19656 | 2574 | 18 | 0 | 6 | 6 | 0 | logfile |
✔ | 6LXV | 30007 | 2023-07-04 | 2020-02-12 | 2.1 | 2.18 | — | 2.2 | 0.025 | 1.66 | 0.0 | 0.12 | 16.07 | 0.01 | 2.196 | 2.01 | 2.81 | 3.9 | 95.9 | 0.1 | -1.79 | 0.78 | 0.91 | 6.69 | 2.2 | 0.002 | 0.57 | 0.0 | 0.04 | 16.46 | 0.00 | 2.149 | 4.16 | 0.92 | 2.3 | 97.7 | 0.0 | 1.03 | 0.92 | 0.79 | 0.91 | 6.13 | 54924 | 6448 | 24 | 0 | 16 | 2967 | 0 | logfile |
✔ | 8FVW | 29494 | 2023-07-12 | 2023-01-19 | 2.1 | 2.22 | 2.16 | 2.2 | 0.004 | 0.61 | 0.0 | 0.04 | 14.45 | 0.00 | 1.974 | 8.97 | 0.07 | 1.9 | 98.1 | 0.0 | 0.42 | 0.72 | 0.88 | 4.32 | 2.2 | 0.003 | 0.54 | 0.0 | 0.04 | 16.71 | 0.00 | 1.928 | 7.87 | 0.59 | 2.2 | 97.8 | 0.0 | 0.56 | 0.36 | 0.73 | 0.89 | 4.20 | 26108 | 3165 | 17 | 52 | 5 | 225 | 0 | logfile |
✔ | 8DBE | 27281 | 2023-07-07 | 2022-06-14 | 2.1 | 2.18 | 2.26 | 2.2 | 0.014 | 0.99 | 0.0 | 0.05 | 17.66 | 0.05 | 1.867 | 9.20 | 3.05 | 4.1 | 95.9 | 0.0 | 0.97 | 0.73 | 0.90 | 6.43 | 2.2 | 0.003 | 1.76 | 0.0 | 0.05 | 17.32 | 0.00 | 1.850 | 6.81 | 1.87 | 2.7 | 97.3 | 0.0 | 0.27 | 0.34 | 0.74 | 0.91 | 6.36 | 14982 | 1896 | 18 | 0 | 30 | 42 | 0 | logfile |
✔ | 7o6E | 12738 | 2023-07-16 | 2021-04-10 | 2.1 | 1.78 | 2.15 | 1.6 | 0.017 | 1.10 | 0.0 | 0.07 | 18.13 | 0.01 | 2.110 | 3.49 | 0.00 | 2.3 | 97.7 | 0.0 | 2.10 | 0.87 | 0.88 | 6.02 | 1.6 | 0.003 | 0.47 | 0.0 | 0.03 | 18.14 | 0.00 | 2.203 | 3.42 | 0.38 | 0.7 | 99.3 | 0.0 | 4.41 | 0.27 | 0.88 | 0.90 | 5.26 | 35304 | 4248 | 48 | 0 | 0 | 1392 | 0 | logfile |
✔ | 7QEW | 13943 | 2023-07-05 | 2021-12-03 | 2.1 | 2.62 | — | 2.2 | 0.005 | 0.86 | 0.0 | 0.03 | 11.15 | 0.00 | 2.191 | 3.73 | 2.18 | 3.3 | 96.7 | 0.0 | 1.32 | 0.78 | 0.89 | 4.62 | 2.3 | 0.003 | 0.66 | 0.0 | 0.04 | 14.43 | 0.00 | 2.188 | 5.93 | 1.19 | 3.0 | 97.0 | 0.0 | 2.91 | 1.06 | 0.79 | 0.92 | 3.35 | 9702 | 1128 | 18 | 0 | 30 | 234 | 0 | logfile |
✔ | 8DQX | 27663 | 2023-07-18 | 2022-07-20 | 2.1 | 2.94 | 2.16 | 2.7 | 0.008 | 0.68 | 0.0 | 0.04 | 17.17 | 0.00 | 1.878 | 4.91 | 1.26 | 2.0 | 98.0 | 0.0 | 1.11 | 0.79 | 0.75 | 4.56 | 2.7 | 0.004 | 0.56 | 0.0 | 0.04 | 16.99 | 0.00 | 1.678 | 4.23 | 1.13 | 1.5 | 98.5 | 0.0 | 1.80 | 0.67 | 0.81 | 0.89 | 4.48 | 43173 | 2598 | 26 | 27 | 8 | 866 | 21143 | logfile |
✔ | 8DBK | 27287 | 2023-07-07 | 2022-06-14 | 2.1 | 2.15 | 2.19 | 2.1 | 0.012 | 1.13 | 2.0 | 0.06 | 18.10 | 0.04 | 1.760 | 5.45 | 1.07 | 3.9 | 96.0 | 0.1 | 0.54 | 0.71 | 0.86 | 6.31 | 2.1 | 0.003 | 1.50 | 0.0 | 0.05 | 16.92 | 0.00 | 1.840 | 5.62 | 1.52 | 3.5 | 96.5 | 0.0 | 0.65 | 0.40 | 0.72 | 0.90 | 6.08 | 14612 | 1868 | 18 | 0 | 30 | 12 | 0 | logfile |
✔ | 7SCA | 25031 | 2023-07-04 | 2021-09-27 | 2.1 | 2.23 | 2.15 | 2.2 | 0.011 | 1.14 | 7.0 | 0.07 | 15.33 | 0.01 | 2.057 | 5.44 | 0.78 | 1.0 | 99.0 | 0.0 | 2.17 | 0.79 | 0.85 | 5.74 | 2.2 | 0.002 | 0.55 | 0.0 | 0.04 | 16.60 | 0.00 | 2.121 | 8.28 | 0.87 | 0.9 | 99.1 | 0.0 | 2.87 | 1.09 | 0.79 | 0.85 | 5.28 | 55437 | 6836 | 116 | 0 | 54 | 1325 | 0 | logfile |
✔ | 8ABL | 15325 | 2023-07-14 | 2022-07-04 | 2.1 | 2.00 | 2.04 | 2.0 | 0.010 | 1.69 | 34.0 | 0.11 | 17.90 | 0.01 | 2.060 | 2.82 | 4.41 | 2.2 | 97.8 | 0.0 | -0.94 | 0.73 | 0.90 | 6.29 | 2.0 | 0.003 | 0.62 | 0.0 | 0.04 | 17.53 | 0.00 | 2.197 | 4.21 | 1.15 | 1.4 | 98.6 | 0.0 | 1.94 | 1.31 | 0.74 | 0.90 | 5.69 | 31660 | 3878 | 33 | 0 | 32 | 0 | 0 | logfile |
✔ | 8BC3 | 15961 | 2023-07-08 | 2022-10-14 | 2.1 | 2.00 | 2.14 | 2.2 | 0.014 | 2.07 | 0.0 | 0.11 | 17.99 | 0.02 | 2.310 | 1.34 | 11.95 | 3.3 | 96.7 | 0.0 | -4.28 | 0.71 | 0.83 | 5.67 | 2.1 | 0.002 | 0.54 | 0.0 | 0.04 | 15.44 | 0.00 | 2.168 | 4.01 | 0.63 | 0.6 | 99.4 | 0.0 | 1.85 | 0.51 | 0.76 | 0.87 | 5.99 | 16880 | 2170 | 30 | 0 | 10 | 500 | 0 | logfile |
✔ | 7PBW | 13307 | 2023-07-05 | 2021-08-02 | 2.1 | 1.98 | — | 2.1 | 0.009 | 0.99 | 0.0 | 0.05 | 12.27 | 0.01 | 2.243 | 2.93 | 0.00 | 0.0 | 100.0 | 0.0 | 3.14 | 0.78 | 0.90 | 7.90 | 2.1 | 0.004 | 0.76 | 0.0 | 0.04 | 14.47 | 0.01 | 2.150 | 7.99 | 0.00 | 0.0 | 100.0 | 0.0 | 4.46 | 0.28 | 0.77 | 0.90 | 7.32 | 9500 | 873 | 54 | 0 | 81 | 230 | 0 | logfile |
✔ | 6XZ7 | 10655 | 2023-07-16 | 2020-02-03 | 2.1 | 2.05 | 2.12 | 2.1 | 0.010 | 0.84 | 1.0 | 0.05 | 14.69 | 0.04 | 1.564 | 6.31 | 3.26 | 2.8 | 96.8 | 0.4 | -2.20 | 0.41 | 0.69 | 5.50 | 2.1 | 0.002 | 0.73 | 0.0 | 0.03 | 14.89 | 0.01 | 1.829 | 6.68 | 2.07 | 2.0 | 97.9 | 0.1 | 0.41 | 0.93 | 0.71 | 0.89 | 5.12 | 94915 | 3351 | 45 | 3169 | 179 | 528 | 0 | logfile |
✔ | 7QQ3 | 14121 | 2023-07-15 | 2022-01-06 | 2.1 | 1.65 | 2.18 | 1.9 | 0.008 | 0.76 | 5.0 | 0.05 | 14.94 | 0.02 | 1.832 | 2.70 | 4.22 | 3.6 | 96.0 | 0.4 | -0.31 | 0.50 | 0.61 | 3.73 | 1.9 | 0.006 | 1.10 | 4.0 | 0.05 | 15.30 | 0.01 | 1.747 | 6.99 | 2.69 | 3.9 | 95.9 | 0.2 | -0.64 | 1.23 | 0.64 | 0.70 | 4.15 | 87594 | 2903 | 35 | 3016 | 154 | 28 | 0 | logfile |
✔ | 7SC8 | 25029 | 2023-07-04 | 2021-09-27 | 2.1 | 2.19 | 2.13 | 1.9 | 0.008 | 1.12 | 10.0 | 0.07 | 15.00 | 0.01 | 2.102 | 5.20 | 0.38 | 1.0 | 99.0 | 0.0 | 2.13 | 0.82 | 0.79 | 4.35 | 1.9 | 0.004 | 0.57 | 0.0 | 0.04 | 16.48 | 0.00 | 2.130 | 8.45 | 0.93 | 1.1 | 98.9 | 0.0 | 2.82 | 0.36 | 0.86 | 0.87 | 4.19 | 56784 | 6836 | 116 | 0 | 54 | 2672 | 0 | logfile |
✔ | 8FUZ | 29482 | 2023-07-11 | 2023-01-18 | 2.1 | 2.08 | 2.21 | 2.1 | 0.007 | 0.86 | 0.0 | 0.05 | 17.81 | 0.01 | 2.232 | 4.59 | 1.17 | 2.1 | 97.9 | 0.0 | 0.92 | 0.78 | 0.91 | 5.73 | 2.1 | 0.003 | 0.56 | 0.0 | 0.04 | 17.79 | 0.00 | 2.228 | 3.17 | 1.53 | 1.6 | 98.4 | 0.0 | 0.75 | 0.34 | 0.77 | 0.91 | 5.53 | 24008 | 3120 | 16 | 0 | 16 | 0 | 0 | logfile |
✔ | 8DQW | 27662 | 2023-07-19 | 2022-07-20 | 2.1 | 2.86 | 2.16 | 2.6 | 0.007 | 0.55 | 0.0 | 0.04 | 17.92 | 0.00 | 1.761 | 3.31 | 0.44 | 1.6 | 98.4 | 0.0 | 2.35 | 0.77 | 0.72 | 3.64 | 2.6 | 0.004 | 0.55 | 0.0 | 0.04 | 17.69 | 0.00 | 1.681 | 3.77 | 1.23 | 1.6 | 98.4 | 0.0 | 2.11 | 2.60 | 0.83 | 0.89 | 3.94 | 46565 | 2802 | 25 | 36 | 8 | 429 | 22936 | logfile |
✔ | 6PXM | 20521 | 2023-07-15 | 2019-07-26 | 2.1 | 2.33 | 2.32 | 2.4 | 0.008 | 0.71 | 0.0 | 0.04 | 16.03 | 0.00 | 2.392 | 1.60 | 0.00 | 0.6 | 99.4 | 0.0 | -3.44 | 0.79 | 0.89 | 5.35 | 2.3 | 0.002 | 0.43 | 0.0 | 0.03 | 17.64 | 0.00 | 2.214 | 4.08 | 0.03 | 1.8 | 98.2 | 0.0 | 5.31 | 1.48 | 0.79 | 0.90 | 3.81 | 32736 | 4080 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 7SQ9 | 25380 | 2023-07-08 | 2021-11-04 | 2.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15810 | 1876 | 16 | 0 | 18 | 16 | 0 | logfile |
✔ | 8FNV | 29327 | 2023-07-12 | 2022-12-28 | 2.11 | 2.24 | 2.15 | 2.2 | 0.007 | 1.36 | 12.0 | 0.07 | 18.52 | 0.02 | 2.014 | 8.59 | 3.84 | 5.7 | 93.5 | 0.8 | 0.03 | 0.71 | 0.82 | 3.84 | 2.2 | 0.003 | 0.62 | 0.0 | 0.04 | 18.06 | 0.00 | 2.067 | 8.88 | 1.54 | 5.2 | 94.2 | 0.5 | 1.28 | 0.48 | 0.74 | 0.87 | 4.18 | 74928 | 9237 | 24 | 0 | 12 | 0 | 0 | logfile |