Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7W4F	32303	2023-02-26	2021-11-27	2.7	2.82	—	2.8	0.008	0.82	1.0	0.04	18.28	0.01	2.201	6.62	1.59	3.8	96.2	0.1	0.96	0.79	0.89	3.43	2.8	0.003	0.57	0.0	0.04	17.61	0.00	2.145	6.11	2.22	3.5	96.4	0.1	1.12	0.26	0.78	0.89	3.43	68192	8270	70	0	46	0	0	logfile
✔	7SK4	25172	2023-02-20	2021-10-19	3.3	3.73	—	3.6	0.003	0.50	0.0	0.05	14.48	0.00	2.086	5.89	0.00	5.6	94.4	0.0	-0.26	0.68	0.79	1.76	3.6	0.003	0.51	0.0	0.04	15.54	0.00	2.068	7.17	0.14	5.6	94.4	0.0	0.05	0.26	0.68	0.80	1.59	13145	831	7	0	2	0	6489	logfile
✔	7WUG	32830	2023-02-22	2022-02-08	3.3	3.43	—	3.4	0.004	0.69	0.0	0.05	13.45	0.00	2.231	3.19	0.11	4.1	95.8	0.0	-0.52	0.79	0.86	2.55	3.4	0.002	0.51	0.0	0.04	15.01	0.00	2.140	5.28	0.22	3.4	96.5	0.0	1.41	0.27	0.78	0.87	1.92	17515	2239	5	0	0	0	0	logfile
✔	7RX5	24725	2023-02-19	2021-08-21	3.4	3.65	—	3.6	0.002	0.25	0.0	0.03	11.98	0.00	2.288	5.05	0.00	0.0	100.0	0.0	4.54	0.70	0.85	3.58	3.6	0.003	0.35	0.0	0.03	13.46	0.00	2.257	6.36	0.00	0.0	100.0	0.0	5.01	0.27	0.71	0.88	2.75	9120	1160	40	0	0	0	0	logfile
✔	7UUR	26801	2023-02-21	2022-04-28	1.67	1.76	1.67	1.8	0.061	2.45	4.0	0.98	14.57	0.01	1.674	7.19	0.44	2.5	97.2	0.2	-0.89	0.76	0.87	7.87	1.8	0.007	2.49	2.0	0.07	14.70	0.01	1.611	10.87	0.29	2.1	97.9	0.0	0.19	0.27	0.77	0.88	7.79	13683	1668	12	0	18	603	0	logfile
✔	8A02	15045	2023-02-17	2022-05-26	3.2	3.27	3.19	3.3	0.003	0.47	0.0	0.05	14.61	0.00	2.264	4.31	0.00	2.0	98.0	0.0	0.16	0.53	0.84	2.28	3.3	0.004	0.53	0.0	0.05	17.20	0.00	2.228	5.11	0.32	2.3	97.6	0.1	-0.29	0.27	0.52	0.86	2.36	5511	717	3	0	0	0	0	logfile
✔	7ZDJ	14651	2023-02-24	2022-03-29	3.25	3.36	—	3.3	0.005	0.77	0.0	1.03	16.21	0.01	2.195	4.39	0.27	2.8	97.2	0.0	-0.38	0.92	0.91	2.70	3.3	0.008	1.56	0.0	0.31	16.28	0.00	2.129	6.77	0.17	2.7	97.3	0.0	1.19	0.27	0.91	0.89	2.52	65812	8160	55	0	16	0	0	logfile
✔	8D0K	27107	2023-02-27	2022-05-26	4.27	4.58	4.33	4.3	0.002	0.50	0.0	0.04	14.88	0.00	2.188	9.52	0.06	3.7	96.1	0.1	0.70	0.82	0.81	—	4.3	0.003	0.56	0.0	0.04	14.95	0.00	2.156	11.62	0.00	4.9	95.0	0.1	0.53	0.27	0.82	0.81	—	31011	3820	8	20	0	0	0	logfile
✔	7ZGQ	14711	2023-02-21	2022-04-04	2.8	2.47	2.69	2.8	0.003	0.55	0.0	0.04	16.53	0.00	2.162	11.31	3.25	6.7	93.3	0.0	-1.11	0.77	0.85	3.25	2.8	0.003	0.59	0.0	0.05	16.86	0.00	2.152	11.97	4.44	7.1	92.9	0.0	-1.30	0.27	0.77	0.85	3.55	13704	1749	4	0	0	0	0	logfile
✔	7FCi	31526	2023-02-17	2021-07-14	3.3	3.20	3.10	3.4	0.003	0.60	0.0	0.04	16.43	0.01	2.250	7.53	4.55	3.6	96.4	0.0	0.59	0.52	0.76	2.38	3.4	0.003	0.61	0.0	0.04	16.12	0.01	2.252	7.71	0.31	3.0	97.0	0.0	0.69	0.27	0.68	0.86	2.38	5613	734	3	0	0	0	0	logfile
✔	7Y83	33679	2023-02-22	2022-06-22	2.93	3.17	3.05	3.2	0.004	0.57	0.0	0.04	19.42	0.00	1.923	18.16	5.52	3.5	96.5	0.0	0.07	0.66	0.79	2.46	3.2	0.003	0.59	0.0	0.04	19.49	0.00	1.951	18.10	6.56	3.0	97.0	0.0	0.18	0.27	0.63	0.79	2.46	16300	1861	5	59	5	0	0	logfile
✔	7LYA	23590	2023-02-22	2021-03-06	2.91	3.17	2.99	3.2	0.007	0.67	0.0	0.04	27.51	0.00	1.325	3.62	0.16	2.5	97.5	0.0	-1.91	0.70	0.84	2.92	3.2	0.004	0.58	0.0	0.03	28.05	0.00	2.152	3.99	1.25	2.1	97.9	0.0	2.09	0.27	0.73	0.86	2.77	12098	767	10	293	0	0	0	logfile
✔	7V7R	31779	2023-02-25	2021-08-21	2.9	3.74	—	3.2	0.003	0.54	0.0	0.04	13.33	0.00	2.163	6.28	0.00	4.5	95.4	0.1	0.06	0.89	0.87	2.64	3.2	0.003	0.56	0.0	0.04	14.58	0.00	2.176	6.68	1.18	4.6	95.3	0.1	0.22	0.27	0.88	0.87	2.33	25362	3095	42	0	84	0	0	logfile
✔	7ZRE	14912	2023-02-20	2022-05-04	3.4	2.77	3.31	3.2	0.006	0.93	1.0	0.05	15.97	0.01	2.231	7.31	0.00	4.3	95.7	0.0	-0.86	0.61	0.78	2.49	3.3	0.002	0.55	0.0	0.04	16.11	0.00	2.177	11.10	0.09	3.8	96.2	0.0	0.83	0.27	0.62	0.81	2.15	10996	1447	6	0	11	0	0	logfile
✔	7W4C	32300	2023-02-26	2021-11-27	2.7	2.83	—	2.8	0.007	0.82	0.0	0.04	18.50	0.01	2.188	7.03	1.33	3.4	96.5	0.1	0.86	0.80	0.89	3.32	2.8	0.002	0.53	0.0	0.04	17.52	0.00	2.146	6.91	1.79	3.5	96.4	0.0	1.26	0.27	0.78	0.88	3.06	68216	8270	69	0	47	0	0	logfile
✔	7TMQ	25999	2023-02-28	2022-01-19	3.3	3.42	—	3.4	0.004	0.57	2.0	0.04	12.67	0.00	2.026	9.95	0.38	2.7	97.3	0.0	1.28	0.77	0.83	3.33	3.4	0.004	0.54	0.0	0.04	13.96	0.00	1.947	9.19	0.38	2.9	97.1	0.0	1.25	0.27	0.79	0.86	2.79	31642	4736	16	0	2	0	0	logfile
✔	7Y82	33678	2023-02-20	2022-06-22	2.83	2.38	2.88	3.0	0.003	0.57	0.0	0.04	18.57	0.00	1.887	16.18	4.59	1.8	98.2	0.0	0.77	0.77	0.81	2.77	3.0	0.003	0.56	0.0	0.04	18.86	0.00	1.907	15.51	4.68	2.2	97.8	0.0	0.90	0.27	0.70	0.79	2.77	12278	1341	4	66	5	0	0	logfile
✔	7QUR	14152	2023-02-26	2022-01-18	2.27	2.80	—	2.7	0.004	0.62	0.0	0.05	15.55	0.00	2.145	4.96	1.01	3.9	96.0	0.1	-0.13	0.73	0.87	4.69	2.7	0.005	0.59	0.0	0.05	15.46	0.00	2.036	4.11	0.97	4.2	95.6	0.2	-0.34	0.28	0.69	0.86	5.07	27174	3303	21	0	75	282	0	logfile
✔	7V2R	31647	2023-02-26	2021-08-09	2.6	2.62	—	2.6	0.007	0.91	13.0	0.06	17.82	0.01	1.360	8.98	1.24	3.6	96.2	0.1	1.07	0.78	0.87	3.78	2.6	0.003	0.55	0.0	0.04	17.30	0.00	2.179	6.51	1.45	3.8	96.2	0.0	1.20	0.28	0.79	0.89	3.44	68260	8270	68	0	47	0	0	logfile
✔	7V7F	31769	2023-02-25	2021-08-21	2.9	3.82	—	3.2	0.004	0.56	0.0	0.05	13.42	0.00	2.061	7.26	0.00	5.1	94.7	0.1	-0.13	0.88	0.86	2.44	3.2	0.002	0.52	0.0	0.05	14.83	0.00	2.104	6.96	1.25	4.7	95.2	0.1	0.10	0.28	0.89	0.87	2.22	25503	3114	42	0	84	0	0	logfile

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