Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8i87	35240	2023-08-21	2023-02-03	3.1	3.24	3.12	3.2	0.003	0.53	3.0	0.04	18.56	0.00	2.023	8.76	4.16	4.0	95.7	0.3	-0.18	0.75	0.83	2.73	3.2	0.003	0.51	0.0	0.04	18.20	0.00	1.982	8.42	0.24	4.3	95.4	0.3	0.12	0.24	0.79	0.86	2.81	31066	3519	20	143	4	0	0	logfile
✔	7A7C	11677	2023-08-11	2020-08-27	3.16	3.66	3.23	3.5	0.003	0.54	0.0	0.04	13.51	0.00	2.199	6.63	0.00	4.5	95.5	0.0	-0.97	0.82	0.87	3.57	3.5	0.003	0.53	0.0	0.04	14.65	0.00	2.119	6.63	0.11	4.2	95.8	0.0	-0.08	0.24	0.82	0.88	3.29	9387	1226	2	0	1	0	0	logfile
✔	8ADi	15363	2023-08-17	2022-07-08	3.4	3.67	3.39	3.7	0.003	0.52	0.0	0.04	14.25	0.01	1.491	4.93	0.08	4.4	95.6	0.0	-0.36	0.69	0.83	3.58	3.7	0.003	0.46	0.0	0.04	14.95	0.00	1.958	5.31	0.40	5.3	94.7	0.0	-0.07	0.24	0.66	0.85	3.10	23141	1505	6	0	0	0	11353	logfile
✔	7K3W	22658	2023-08-24	2020-09-14	1.36	1.48	—	1.5	0.005	0.76	0.0	0.04	20.58	0.00	1.934	3.30	0.00	1.8	98.2	0.0	3.35	0.73	0.80	9.05	1.5	0.004	0.67	0.0	0.04	14.88	0.00	2.032	2.26	0.00	1.8	98.2	0.0	4.02	0.24	0.75	0.82	9.16	39086	4128	72	0	382	2680	0	logfile
✔	7UWM	26836	2023-08-10	2022-05-03	2.5	2.14	2.51	1.9	0.004	0.59	0.0	0.04	18.27	0.00	2.107	6.68	2.96	3.0	97.0	0.0	-0.69	0.80	0.79	2.42	1.9	0.003	0.57	0.0	0.04	18.46	0.00	2.122	7.90	4.39	3.5	96.5	0.0	-0.58	0.24	0.80	0.79	2.46	7972	967	9	0	9	0	0	logfile
✔	8EYi	28690	2023-08-14	2022-10-27	2.7	3.30	2.69	3.1	0.017	0.98	0.0	0.05	16.32	0.01	2.204	10.69	2.06	2.0	98.0	0.0	0.27	0.80	0.81	2.89	3.1	0.003	0.55	0.0	0.04	16.19	0.00	2.181	10.34	2.06	1.7	98.3	0.0	0.39	0.24	0.80	0.81	3.00	16252	2172	4	0	4	0	0	logfile
✔	7SZi	25567	2023-08-10	2021-11-27	2.7	3.34	—	3.1	0.002	0.44	0.0	0.04	13.00	0.00	2.265	3.93	0.12	3.5	96.4	0.1	0.36	0.70	0.86	5.04	3.1	0.004	0.54	0.0	0.04	14.28	0.00	2.186	3.74	0.96	3.8	96.1	0.1	0.05	0.24	0.72	0.88	5.17	8089	1038	4	0	0	0	0	logfile
✔	8GH9	40038	2023-08-19	2023-03-09	3.8	4.28	4.07	4.2	0.004	0.75	0.0	0.05	17.39	0.00	2.171	9.31	0.37	7.1	92.9	0.0	-1.54	0.70	0.80	0.97	4.2	0.005	0.72	0.0	0.04	17.50	0.00	2.075	13.87	0.70	8.7	91.3	0.0	-1.22	0.24	0.71	0.81	1.30	27066	3389	4	0	0	0	0	logfile
✔	7NL0	12453	2023-08-12	2021-02-19	3.5	3.08	—	3.0	0.006	0.71	0.0	0.04	29.75	0.00	2.147	12.17	0.00	4.1	95.9	0.0	0.67	0.78	0.81	3.10	3.1	0.004	0.61	0.0	0.03	29.99	0.00	2.219	10.71	0.00	3.0	97.0	0.0	2.21	0.24	0.78	0.81	2.84	11363	755	10	262	0	0	0	logfile
✔	7YSU	34082	2023-08-12	2022-08-13	3.2	3.84	3.33	3.7	0.005	0.94	0.0	0.22	16.45	0.01	2.065	11.09	0.31	6.4	93.6	0.0	-2.08	0.73	0.76	2.52	3.7	0.003	0.62	0.0	0.04	16.94	0.00	1.990	12.28	0.31	6.7	93.3	0.0	-1.49	0.24	0.74	0.78	2.53	12430	1521	7	0	12	0	0	logfile
✔	7UPD	26662	2023-08-14	2022-04-14	2.4	2.56	2.38	2.5	0.003	0.57	0.0	0.05	15.86	0.00	2.222	1.74	1.18	1.7	98.3	0.0	0.86	0.78	0.89	5.05	2.5	0.003	0.60	0.0	0.05	16.61	0.00	2.105	2.06	2.09	1.8	98.2	0.0	0.82	0.24	0.78	0.90	4.97	15801	2016	12	0	12	0	0	logfile
✔	7UZQ	26916	2023-08-16	2022-05-09	2.17	2.05	2.16	2.1	0.006	0.92	0.0	0.05	16.21	0.01	2.215	4.59	2.27	1.8	98.0	0.2	2.16	0.68	0.87	5.59	2.1	0.004	0.62	0.0	0.04	16.14	0.00	2.133	5.32	1.89	2.0	97.9	0.1	1.79	0.24	0.69	0.88	5.85	20617	1315	10	0	4	235	10214	logfile
✔	7V2L	31655	2023-08-09	2021-08-09	3.3	3.14	3.24	3.1	0.008	1.07	1.0	0.10	16.30	0.00	2.214	5.68	0.09	6.7	93.1	0.2	-0.61	0.78	0.87	2.42	3.1	0.003	0.56	0.0	0.03	16.73	0.00	2.080	8.24	0.32	7.0	92.9	0.1	-0.28	0.24	0.79	0.88	2.06	53410	2621	24	1507	2	0	0	logfile
✔	7W1P	32254	2023-08-14	2021-11-19	3.1	3.14	—	3.1	0.007	0.76	1.0	0.04	17.57	0.01	2.111	7.51	0.21	3.8	96.1	0.0	1.03	0.80	0.88	2.94	3.1	0.004	0.60	0.0	0.04	17.00	0.00	2.097	7.89	0.24	4.4	95.6	0.0	0.92	0.25	0.81	0.89	2.89	66868	8140	67	0	40	0	0	logfile
✔	8BoN	16144	2023-08-18	2022-11-15	3.2	3.14	3.12	3.1	0.004	0.57	0.0	0.04	13.20	0.00	2.145	5.32	0.00	3.0	97.0	0.0	0.15	0.76	0.79	2.78	3.1	0.003	0.51	0.0	0.04	14.23	0.00	2.189	6.10	0.14	3.2	96.8	0.0	0.27	0.25	0.76	0.78	2.37	25930	3246	22	0	52	0	0	logfile
✔	7VY9	32197	2023-08-24	2021-11-13	2.9	2.96	—	2.9	0.007	0.83	0.0	0.04	18.23	0.01	2.198	8.03	0.99	3.4	96.5	0.1	1.79	0.72	0.89	3.20	2.9	0.003	0.57	0.0	0.04	17.13	0.00	2.122	7.45	1.70	3.4	96.5	0.1	1.87	0.25	0.72	0.89	3.13	39717	4726	42	0	27	0	0	logfile
✔	8DiS	27441	2023-08-21	2022-06-29	2.62	3.13	2.74	3.0	0.008	0.91	0.0	0.05	17.03	0.00	2.224	4.63	5.04	3.7	95.9	0.4	-1.28	0.78	0.82	4.42	3.1	0.003	0.57	0.0	0.05	17.14	0.00	2.281	4.30	5.04	3.2	96.5	0.3	-0.33	0.25	0.72	0.87	4.27	17044	2148	30	0	27	61	0	logfile
✔	8AT6	15635	2023-08-12	2022-08-22	3.7	3.84	3.67	3.7	0.003	0.64	0.0	0.04	16.25	0.00	2.222	9.66	0.00	5.9	93.8	0.3	0.49	0.89	0.85	1.40	3.6	0.002	0.54	0.0	0.04	16.67	0.00	2.194	9.06	0.07	5.4	94.4	0.2	0.92	0.25	0.88	0.85	1.30	12583	1580	6	0	0	0	0	logfile
✔	8E3M	27868	2023-08-13	2022-08-17	2.25	2.92	2.58	2.7	0.005	0.42	0.0	0.07	13.03	0.02	1.973	2.01	1.27	4.0	96.0	0.0	0.83	0.71	0.91	5.18	2.7	0.004	0.61	0.0	0.04	14.11	0.01	1.960	3.50	1.49	5.2	94.7	0.2	0.15	0.25	0.69	0.90	5.49	115715	1179	11	3016	1	0	41815	logfile
✔	7Yi3	33850	2023-08-12	2022-07-14	3.3	2.58	3.25	3.1	0.003	0.52	0.0	0.04	16.30	0.01	2.014	7.86	0.16	6.1	93.9	0.0	-0.30	0.73	0.77	2.60	3.1	0.003	0.50	0.0	0.04	17.03	0.00	2.003	8.52	0.16	6.5	93.5	0.0	0.39	0.25	0.73	0.77	2.28	11425	1392	7	0	5	0	0	logfile

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