Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UNQ	26629	2022-11-29	2022-04-11	3.4	3.80	3.38	3.5	0.003	0.63	1.0	0.05	13.87	0.00	2.233	10.08	1.17	9.0	90.0	1.0	-1.44	0.55	0.80	2.08	3.6	0.004	0.66	0.0	0.04	15.03	0.00	2.210	9.37	0.29	9.0	90.6	0.4	-1.22	0.53	0.55	0.89	1.18	3528	486	1	1	0	0	0	logfile
✔	7PDH	13338	2022-11-29	2021-08-05	4.0	3.51	—	3.2	0.003	0.70	0.0	0.04	14.16	0.00	2.169	14.54	0.00	5.8	94.2	0.0	-1.07	0.79	0.69	—	3.2	0.003	0.69	0.0	0.04	16.40	0.00	2.171	14.54	0.00	6.7	93.3	0.0	-0.70	0.53	0.79	0.70	—	4516	577	2	0	0	0	0	logfile
✔	7SK2	25170	2022-11-29	2021-10-19	3.82	4.03	—	3.9	0.007	1.05	0.0	0.06	13.60	0.01	2.235	8.03	0.00	4.7	95.3	0.0	-2.59	0.49	0.69	1.11	3.9	0.003	0.74	0.0	0.04	15.93	0.00	2.115	17.89	0.47	5.1	94.9	0.0	-0.64	0.53	0.50	0.70	1.11	4177	532	1	0	1	0	0	logfile
✔	7WRL	32732	2022-11-29	2022-01-27	3.51	3.69	—	3.6	0.006	1.03	0.0	0.06	14.71	0.01	2.289	5.84	0.00	13.4	86.6	0.0	-4.19	0.64	0.78	2.31	3.6	0.004	0.67	0.0	0.04	15.83	0.00	2.221	11.36	0.28	12.2	87.8	0.0	-3.33	0.53	0.63	0.78	2.78	3251	419	3	0	0	0	0	logfile
✔	7oG6	12879	2022-11-29	2021-05-06	3.3	3.47	—	2.9	0.008	0.82	0.0	0.04	17.33	0.01	2.325	7.36	6.10	9.6	90.4	0.0	-4.47	0.28	0.82	2.77	2.9	0.003	0.58	0.0	0.04	16.44	0.00	2.233	9.92	0.00	6.6	93.4	0.0	-0.04	0.54	0.27	0.84	3.04	1602	199	2	5	0	0	0	logfile
✔	8Di5	27439	2022-11-29	2022-06-28	3.04	3.55	3.03	3.5	0.006	0.95	0.0	0.06	12.34	0.01	2.300	4.17	0.38	3.3	96.7	0.0	-2.40	0.65	0.80	4.29	3.5	0.003	0.60	0.0	0.04	15.70	0.00	2.313	11.48	0.00	3.6	96.4	0.0	-1.34	0.54	0.65	0.81	3.80	2467	311	3	0	1	0	0	logfile
✔	7W9F	32366	2022-11-29	2021-12-09	3.6	2.59	—	2.2	0.003	0.72	0.0	0.05	13.99	0.01	2.302	3.47	0.00	3.7	96.3	0.0	-3.66	0.73	0.72	1.95	3.2	0.003	0.66	0.0	0.04	16.05	0.00	2.090	11.05	0.37	4.4	95.6	0.0	-1.09	0.54	0.74	0.73	1.89	4856	625	3	0	0	0	0	logfile
✔	7LCK	23276	2022-11-29	2021-01-11	3.24	3.84	3.15	3.6	0.008	1.05	4.0	0.07	14.23	0.01	2.160	7.79	1.16	6.7	93.3	0.0	-0.93	0.69	0.79	2.21	3.7	0.003	0.62	0.0	0.04	15.17	0.00	2.228	4.83	0.58	4.1	95.9	0.0	0.64	0.55	0.66	0.79	2.04	3258	390	1	0	1	11	0	logfile
✔	6UWL	20923	2022-11-29	2019-11-05	3.62	3.73	—	3.7	0.008	1.16	0.0	0.06	16.05	0.01	2.303	6.24	0.00	7.6	92.2	0.3	-4.71	0.67	0.82	1.71	3.7	0.004	0.77	0.0	0.04	16.09	0.00	2.200	12.65	0.64	6.3	93.7	0.0	-0.08	0.55	0.66	0.81	1.34	3029	402	1	0	1	0	0	logfile
✔	6PES	20331	2022-11-29	2019-06-20	3.6	3.82	—	4.0	0.009	0.70	0.0	0.06	12.87	0.01	2.432	11.45	0.00	12.3	87.7	0.0	-1.79	0.38	0.78	1.73	4.0	0.003	0.59	0.0	0.05	14.73	0.00	2.341	7.11	0.00	6.5	93.5	0.0	-2.43	0.56	0.43	0.81	2.65	4040	590	10	0	0	0	0	logfile
✔	7V4B	31706	2022-11-29	2021-08-12	3.1	3.04	—	3.1	0.006	0.60	0.0	0.05	14.55	0.00	2.375	15.32	0.00	13.2	86.8	0.0	-5.99	0.41	0.69	2.66	3.1	0.008	0.78	0.0	0.05	17.31	0.00	2.146	10.95	0.60	18.9	81.1	0.0	-4.89	0.56	0.41	0.69	2.54	3336	480	6	0	0	0	0	logfile
✔	7WP0	32665	2022-11-29	2022-01-22	3.71	3.94	—	3.9	0.007	0.94	0.0	0.06	14.46	0.01	2.281	5.81	0.59	8.5	91.5	0.0	-4.57	0.65	0.80	3.41	3.9	0.004	0.70	0.0	0.04	16.30	0.00	2.268	12.27	0.88	8.0	92.0	0.0	-2.30	0.56	0.64	0.80	2.22	3174	407	3	0	1	0	0	logfile
✔	7N9A	24253	2022-11-29	2021-06-17	3.5	2.68	—	2.4	0.007	1.26	0.0	0.06	12.63	0.01	2.135	19.96	0.00	2.9	97.1	0.0	-0.16	0.72	0.70	2.72	2.4	0.003	0.70	0.0	0.04	15.29	0.00	2.157	13.87	1.55	2.9	97.1	0.0	-1.08	0.56	0.73	0.70	2.14	2431	312	2	0	0	0	0	logfile
✔	7V22	31634	2022-11-29	2021-08-07	3.38	3.61	—	3.6	0.003	0.66	0.0	0.04	14.10	0.00	2.236	8.81	0.46	12.1	87.5	0.4	-2.81	0.53	0.77	4.24	3.6	0.004	0.70	0.0	0.04	15.65	0.00	2.182	11.91	0.00	12.1	87.5	0.4	-2.40	0.56	0.54	0.80	3.45	1958	240	1	0	0	0	0	logfile
✔	7SoA	25264	2022-11-29	2021-10-29	3.1	3.33	3.14	3.3	0.010	1.26	0.0	0.08	10.28	0.01	2.194	1.20	0.24	2.0	98.0	0.0	0.99	0.68	0.84	4.69	3.3	0.004	0.59	0.0	0.04	13.33	0.00	2.221	4.12	0.73	2.8	97.2	0.0	0.92	0.57	0.68	0.90	4.89	3850	477	5	0	6	0	0	logfile
✔	6V5V	21054	2022-11-29	2019-12-04	3.8	4.01	—	3.9	0.003	0.51	0.0	0.04	13.58	0.00	2.212	6.41	0.00	4.6	95.4	0.0	-2.04	0.52	0.83	2.06	3.9	0.002	0.54	0.0	0.04	14.64	0.00	2.192	8.26	0.30	3.2	96.8	0.0	0.28	0.57	0.53	0.82	1.76	2979	369	1	1	0	0	0	logfile
✔	7USB	26731	2022-11-29	2022-04-23	3.1	3.28	3.18	3.3	0.012	1.70	0.0	0.11	10.61	0.01	2.590	1.61	1.39	5.5	94.5	0.0	-0.28	0.59	0.76	5.40	3.3	0.003	0.63	0.0	0.05	13.28	0.00	2.383	4.82	0.00	4.5	95.5	0.0	-1.64	0.58	0.61	0.83	5.47	1661	213	3	0	5	0	0	logfile
✔	7KNU	22963	2022-11-29	2020-11-06	3.49	4.38	3.61	4.1	0.003	0.64	0.0	0.04	14.11	0.01	2.141	9.64	0.00	4.0	96.0	0.0	-1.59	0.59	0.76	1.17	4.1	0.003	0.70	0.0	0.04	16.16	0.00	2.174	14.14	0.00	4.0	96.0	0.0	-0.39	0.58	0.59	0.77	0.52	3809	467	3	0	0	0	0	logfile
✔	7SK1	25169	2022-11-29	2021-10-19	3.43	3.92	3.64	4.0	0.009	1.07	0.0	0.06	12.81	0.01	2.254	1.39	0.43	3.8	96.2	0.0	1.09	0.59	0.73	1.99	4.0	0.003	0.63	0.0	0.04	15.96	0.01	2.301	7.30	0.43	4.2	95.8	0.0	0.11	0.58	0.59	0.74	0.71	4291	524	4	0	7	0	0	logfile
✔	7SK0	25168	2022-11-29	2021-10-19	3.33	3.63	2.74	3.6	0.009	1.04	0.0	0.06	14.22	0.01	2.005	3.11	0.44	4.3	95.7	0.0	0.35	0.47	0.66	1.21	3.6	0.004	0.76	0.0	0.04	15.88	0.00	2.177	14.34	0.00	2.2	97.8	0.0	1.88	0.59	0.50	0.70	1.92	4168	514	4	0	7	0	0	logfile

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