Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8oRG	17123	2023-08-09	2023-04-13	2.3	2.70	2.18	2.6	0.010	1.26	0.0	0.08	11.92	0.01	2.462	0.00	0.00	2.4	97.6	0.0	-2.52	0.32	0.76	4.82	2.6	0.003	0.57	0.0	0.05	17.00	0.00	2.261	1.77	2.63	1.6	98.4	0.0	-2.71	1.18	0.37	0.83	4.10	3966	258	3	0	0	0	2025	logfile
✔	8J1Q	35930	2023-08-09	2023-04-13	3.3	4.10	3.20	3.9	0.030	1.93	0.0	0.05	28.55	0.00	2.043	8.92	0.28	7.1	92.9	0.0	-1.02	0.73	0.64	2.45	3.9	0.003	1.32	0.0	0.04	28.74	0.00	2.192	13.94	0.84	5.9	94.1	0.0	-0.92	0.51	0.78	0.78	1.91	5447	427	5	90	1	0	0	logfile
✔	8oR4	17117	2023-08-13	2023-04-13	3.8	2.76	3.68	2.2	0.003	0.59	1.0	0.04	16.20	0.00	1.930	10.19	0.31	6.0	94.0	0.0	0.05	0.70	0.66	0.53	2.2	0.003	0.77	0.0	0.04	17.22	0.00	2.145	10.05	0.56	5.8	94.2	0.0	-0.28	0.54	0.71	0.67	0.47	15036	1988	7	0	0	0	0	logfile
✔	8J1N	35928	2023-08-09	2023-04-13	2.51	2.65	2.47	2.7	0.009	1.01	0.0	0.05	14.64	0.00	2.219	8.99	0.00	2.9	97.1	0.0	1.72	0.60	0.79	3.77	2.7	0.003	0.52	0.0	0.04	16.76	0.00	2.257	6.56	1.18	1.7	98.3	0.0	3.31	0.57	0.63	0.87	3.43	3292	414	3	0	4	0	0	logfile
✔	8oRF	17122	2023-08-09	2023-04-13	2.5	2.71	2.32	2.7	0.010	1.27	0.0	0.07	11.76	0.01	2.508	0.00	0.00	5.1	94.9	0.0	-2.82	0.31	0.74	5.59	2.7	0.004	0.61	0.0	0.05	17.12	0.00	2.097	5.38	1.52	4.0	96.0	0.0	-3.23	1.23	0.38	0.82	5.50	4653	303	3	0	0	0	2382	logfile
✔	8SGZ	40474	2023-08-09	2023-04-13	3.2	2.69	3.12	3.1	0.004	0.79	0.0	0.05	13.24	0.00	2.154	15.29	1.21	7.4	92.6	0.1	-1.59	0.68	0.74	2.17	2.8	0.004	0.67	0.0	0.05	15.69	0.00	2.138	9.72	0.16	5.5	94.5	0.0	-1.76	1.37	0.72	0.83	2.30	53430	6876	18	0	6	0	0	logfile
✔	8oRE	17121	2023-08-09	2023-04-13	2.5	2.67	2.44	2.7	0.011	2.09	7.0	0.14	10.93	0.01	2.570	0.00	0.00	8.0	92.0	0.0	-2.10	0.32	0.74	5.29	2.7	0.003	0.69	0.0	0.05	17.33	0.00	2.218	3.60	1.00	6.7	93.3	0.0	-1.84	3.46	0.37	0.81	5.04	3615	231	3	0	0	0	1845	logfile
✔	8J19	35914	2023-08-10	2023-04-12	3.23	3.65	3.37	3.6	0.005	0.63	1.0	0.04	15.96	0.00	2.220	5.65	0.74	1.9	98.1	0.0	0.90	0.65	0.84	3.13	3.6	0.002	0.58	0.0	0.04	16.14	0.00	2.188	7.25	0.11	2.1	97.9	0.0	0.76	0.94	0.60	0.83	2.93	8801	1129	6	0	1	0	0	logfile
✔	8J1A	35915	2023-08-10	2023-04-12	3.24	3.58	3.34	3.6	0.004	0.62	0.0	0.04	15.32	0.00	1.976	5.61	0.63	3.8	96.2	0.0	0.36	0.61	0.82	2.87	3.6	0.003	0.55	0.0	0.04	15.71	0.00	2.064	6.35	0.10	3.6	96.4	0.0	0.51	0.39	0.57	0.82	2.94	8845	1137	5	0	0	0	0	logfile
✘	8J18	35913	2023-08-10	2023-04-12	2.89	3.40	3.16	3.3	0.004	0.71	0.0	0.05	15.92	0.00	2.181	6.45	1.26	4.0	96.0	0.0	-0.18	0.56	0.78	3.08	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8860	1137	6	0	1	0	0	logfile
✘	8oR2	17115	2023-08-14	2023-04-12	3.2	2.36	3.12	3.0	0.007	0.76	13.0	0.06	14.65	0.00	1.805	7.23	1.24	3.3	96.7	0.0	1.99	0.72	0.66	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16558	2072	5	0	3	0	0	logfile
✔	8oR0	17114	2023-08-15	2023-04-12	3.1	2.37	2.99	1.7	0.004	0.64	1.0	0.04	15.61	0.00	1.149	6.33	0.51	3.9	96.1	0.0	0.59	0.64	0.56	0.20	1.5	0.004	0.72	0.0	0.04	16.60	0.00	2.020	13.34	0.36	4.7	95.3	0.0	-0.12	1.69	0.70	0.65	0.89	18823	2489	8	0	3	0	0	logfile
✔	8SEY	40433	2023-08-16	2023-04-10	2.99	3.15	3.05	3.1	0.002	0.46	0.0	0.04	12.75	0.00	2.224	4.52	0.00	2.5	97.5	0.0	1.73	0.64	0.84	2.70	3.1	0.005	0.56	0.0	0.04	15.98	0.00	2.121	5.04	2.06	2.5	97.5	0.0	1.68	0.37	0.65	0.87	2.60	20568	2504	8	0	8	0	0	logfile
✔	8SEW	40431	2023-08-16	2023-04-10	2.89	2.97	2.87	3.0	0.004	0.59	0.0	0.04	12.56	0.00	0.267	5.77	2.14	2.1	97.7	0.2	1.93	0.60	0.79	2.44	3.0	0.003	0.58	0.0	0.04	16.35	0.00	2.215	6.47	1.20	1.6	98.2	0.2	1.93	0.57	0.61	0.81	2.28	20716	2516	8	0	8	0	0	logfile
✔	8SEZ	40434	2023-08-16	2023-04-10	3.54	3.68	3.48	3.6	0.003	0.57	0.0	0.04	12.88	0.01	0.570	14.92	0.27	2.9	96.9	0.2	1.95	0.53	0.75	1.99	3.6	0.003	0.60	0.0	0.04	16.08	0.01	2.104	9.63	0.45	3.2	96.6	0.2	1.87	0.61	0.57	0.78	2.05	20580	2508	8	4	4	0	0	logfile
✔	8SEU	40429	2023-08-16	2023-04-10	3.0	3.25	3.00	3.2	0.005	0.72	8.0	0.05	12.63	0.00	1.873	7.45	1.96	2.3	97.4	0.3	1.51	0.59	0.85	2.48	3.2	0.002	0.52	0.0	0.04	15.48	0.00	2.213	6.00	1.43	1.6	98.2	0.2	2.68	1.40	0.57	0.84	2.05	20576	2512	8	0	4	0	0	logfile
✔	8SF0	40435	2023-08-16	2023-04-10	2.9	3.06	2.90	3.0	0.003	0.50	0.0	0.04	15.10	0.00	2.161	6.14	0.00	2.4	97.6	0.0	1.75	0.63	0.81	2.42	3.0	0.004	0.54	0.0	0.04	17.77	0.00	2.211	7.39	0.40	1.4	98.6	0.0	2.01	0.39	0.64	0.84	2.36	20664	2512	8	0	8	0	0	logfile
✔	8SEX	40432	2023-08-16	2023-04-10	2.84	2.99	2.84	3.0	0.005	0.56	0.0	0.04	12.78	0.01	0.419	6.47	2.15	2.8	97.1	0.2	1.60	0.63	0.81	2.20	3.0	0.003	0.55	0.0	0.04	16.37	0.00	2.240	6.71	3.23	1.7	98.2	0.2	1.64	0.54	0.65	0.84	2.23	20568	2504	8	0	8	0	0	logfile
✔	8SEV	40430	2023-08-16	2023-04-10	3.17	3.33	3.18	3.3	0.003	0.53	0.0	0.04	14.38	0.00	2.236	6.19	0.00	3.1	96.9	0.0	1.76	0.60	0.79	2.51	3.3	0.002	0.50	0.0	0.04	15.99	0.00	2.211	6.87	0.09	3.2	96.8	0.0	1.78	0.49	0.60	0.81	1.90	20632	2504	8	0	8	0	0	logfile
✔	8oPQ	17085	2023-08-11	2023-04-07	3.28	2.33	3.33	2.2	0.003	0.52	0.0	0.04	9.91	0.01	2.245	8.25	0.00	3.8	96.2	0.0	1.64	0.77	0.77	3.11	2.2	0.003	0.65	0.0	0.04	14.96	0.00	2.147	8.54	0.55	3.7	96.3	0.0	2.09	0.54	0.77	0.79	2.88	10006	1296	4	0	2	0	0	logfile

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