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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8AKN | 15488 | 2023-07-21 | 2022-07-30 | 2.3 | 1.94 | 2.20 | 2.2 | 0.013 | 1.78 | 0.0 | 0.17 | 14.48 | 0.02 | 1.528 | 3.25 | 2.19 | 5.9 | 93.2 | 0.9 | -3.31 | 0.61 | 0.80 | 5.18 | 2.1 | 0.005 | 0.79 | 0.0 | 0.04 | 15.02 | 0.01 | 1.767 | 7.21 | 2.33 | 2.6 | 97.3 | 0.1 | -0.01 | 1.22 | 0.72 | 0.85 | 4.95 | 146513 | 5960 | 103 | 4552 | 309 | 1754 | 0 | logfile |
✔ | 5JTE | 8175 | 2023-07-21 | 2016-05-09 | 3.6 | 3.13 | — | 3.2 | 0.015 | 1.75 | 0.0 | 0.07 | 12.22 | 0.01 | 1.432 | 6.25 | 0.00 | 7.4 | 90.0 | 2.7 | -1.94 | 0.53 | 0.56 | 0.78 | 3.1 | 0.006 | 0.90 | 0.0 | 0.05 | 16.17 | 0.01 | 2.025 | 16.45 | 1.18 | 10.2 | 89.1 | 0.8 | -2.75 | 1.48 | 0.58 | 0.68 | 1.21 | 146760 | 5625 | 59 | 4786 | 1 | 0 | 0 | logfile |
✔ | 7oJ0 | 12937 | 2023-07-21 | 2021-05-13 | 3.5 | 3.49 | — | 3.3 | 0.006 | 0.84 | 1.0 | 0.04 | 14.16 | 0.02 | 1.995 | 7.15 | 0.16 | 4.4 | 95.5 | 0.1 | -1.32 | 0.87 | 0.88 | 2.11 | 3.3 | 0.004 | 0.70 | 0.0 | 0.04 | 14.86 | 0.01 | 1.827 | 15.59 | 0.95 | 5.1 | 94.8 | 0.1 | -0.70 | 0.39 | 0.87 | 0.88 | 1.70 | 146507 | 6266 | 66 | 4525 | 310 | 0 | 0 | logfile |
✔ | 6WD1 | 21620 | 2023-07-21 | 2020-03-31 | 3.3 | 3.61 | 3.63 | 3.4 | 0.006 | 0.94 | 0.0 | 0.08 | 13.39 | 0.01 | 2.219 | 11.79 | 0.55 | 10.6 | 87.9 | 1.5 | -5.05 | 0.82 | 0.83 | 1.64 | 3.4 | 0.005 | 0.68 | 0.0 | 0.04 | 15.58 | 0.00 | 2.015 | 18.97 | 0.77 | 9.9 | 89.9 | 0.1 | -2.20 | 0.68 | 0.83 | 0.85 | 1.26 | 146942 | 6023 | 56 | 4657 | 0 | 0 | 0 | logfile |
✔ | 7R4Q | 14314 | 2023-07-20 | 2022-02-09 | 3.6 | 3.14 | — | 5.7 | 0.022 | 3.26 | 109.0 | 0.39 | 15.97 | 0.02 | 1.450 | 30.29 | 3.30 | 8.7 | 91.1 | 0.2 | -2.35 | 0.48 | 0.21 | -0.05 | 4.0 | 0.011 | 1.13 | 8.0 | 0.17 | 15.61 | 0.01 | 1.762 | 27.43 | 0.44 | 10.0 | 90.0 | 0.0 | -2.21 | 1.76 | 0.63 | 0.58 | 0.35 | 51420 | 3414 | 13 | 0 | 43 | 0 | 24182 | logfile |
✔ | 7R4R | 14315 | 2023-07-20 | 2022-02-09 | 3.9 | 4.20 | — | 6.8 | 0.036 | 4.11 | 135.0 | 0.31 | 17.67 | 0.03 | 1.228 | 59.98 | 7.44 | 8.5 | 91.3 | 0.2 | -3.20 | 0.62 | 0.41 | -0.13 | 5.8 | 0.004 | 1.38 | 17.0 | 0.24 | 16.50 | 0.00 | 1.894 | 28.07 | 2.09 | 8.3 | 91.6 | 0.1 | -2.33 | 1.31 | 0.68 | 0.60 | -0.04 | 50505 | 3293 | 12 | 0 | 43 | 0 | 24171 | logfile |
✘ | 7A4P | 11640 | 2023-07-20 | 2020-08-20 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 48636 | 4086 | 38 | 0 | 337 | 0 | 0 | logfile |
✔ | 5o31 | 3731 | 2023-07-20 | 2017-05-23 | 4.13 | 4.19 | — | 4.1 | 0.008 | 1.37 | 11.0 | 1.11 | 13.96 | 0.01 | 2.512 | 2.82 | 2.22 | 9.3 | 88.3 | 2.4 | -4.78 | 0.70 | 0.73 | — | 4.1 | 0.009 | 1.83 | 0.0 | 0.33 | 12.96 | 0.00 | 1.968 | 13.88 | 0.03 | 9.7 | 90.0 | 0.4 | -1.69 | 2.19 | 0.71 | 0.76 | — | 52703 | 7006 | 52 | 0 | 816 | 0 | 0 | logfile |
✘ | 6SL5 | 10236 | 2023-07-20 | 2019-08-18 | 2.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 43789 | 3744 | 36 | 0 | 292 | 0 | 0 | logfile |
✔ | 8E4P | 27895 | 2023-07-20 | 2022-08-18 | 3.59 | 4.02 | 3.50 | 3.9 | 0.004 | 0.75 | 0.0 | 0.05 | 13.14 | 0.00 | 2.242 | 7.79 | 0.00 | 3.0 | 97.0 | 0.0 | 2.88 | 0.65 | 0.74 | 1.40 | 3.8 | 0.003 | 0.47 | 0.0 | 0.03 | 13.81 | 0.00 | 2.116 | 8.42 | 0.16 | 3.2 | 96.8 | 0.0 | 2.77 | 0.46 | 0.66 | 0.76 | 1.18 | 51336 | 3596 | 8 | 0 | 12 | 0 | 24392 | logfile |
✔ | 7NAT | 12247 | 2023-07-20 | 2021-01-25 | 3.59 | 4.72 | 3.68 | 2.6 | 0.009 | 0.84 | 6.0 | 0.05 | 15.94 | 0.02 | 0.616 | 27.68 | 0.00 | 7.4 | 92.6 | 0.0 | -3.28 | 0.90 | 0.81 | 0.72 | 2.5 | 0.004 | 0.69 | 0.0 | 0.03 | 16.22 | 0.01 | 1.845 | 26.16 | 0.52 | 4.7 | 95.3 | 0.0 | -1.07 | 1.32 | 0.92 | 0.87 | 0.63 | 50921 | 2562 | 25 | 1430 | 66 | 0 | 0 | logfile |
✔ | 7R4i | 14313 | 2023-07-20 | 2022-02-08 | 3.2 | 2.65 | — | 3.2 | 0.019 | 1.00 | 2.0 | 0.05 | 14.27 | 0.01 | 1.819 | 36.30 | 0.17 | 13.1 | 86.9 | 0.1 | -5.90 | 0.65 | 0.65 | 1.25 | 3.2 | 0.015 | 0.74 | 2.0 | 0.05 | 16.01 | 0.00 | 1.893 | 21.00 | 0.40 | 6.6 | 93.4 | 0.0 | -2.28 | 1.27 | 0.69 | 0.73 | 1.64 | 51473 | 3423 | 13 | 0 | 43 | 0 | 24148 | logfile |
✔ | 7L5W | 23191 | 2023-07-20 | 2020-12-23 | 3.34 | 3.25 | — | 3.6 | 0.006 | 1.01 | 0.0 | 0.06 | 14.60 | 0.01 | 2.172 | 11.17 | 0.00 | 6.8 | 93.2 | 0.0 | -2.74 | 0.70 | 0.77 | 2.23 | 3.6 | 0.003 | 0.63 | 0.0 | 0.05 | 16.48 | 0.00 | 2.033 | 14.35 | 0.22 | 6.0 | 94.0 | 0.0 | -0.34 | 0.56 | 0.70 | 0.78 | 1.75 | 51828 | 6636 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WTQ | 32795 | 2023-07-20 | 2022-02-05 | 3.7 | 3.57 | — | 3.4 | 0.005 | 0.90 | 0.0 | 0.05 | 16.33 | 0.01 | 2.146 | 6.91 | 0.04 | 8.0 | 91.8 | 0.1 | -1.90 | 0.82 | 0.79 | 1.74 | 3.4 | 0.007 | 0.81 | 0.0 | 0.04 | 17.09 | 0.01 | 1.974 | 17.27 | 0.91 | 9.7 | 90.2 | 0.1 | -1.27 | 1.14 | 0.83 | 0.81 | 1.24 | 51309 | 3079 | 19 | 1255 | 1 | 0 | 0 | logfile |
✔ | 7XSD | 33524 | 2023-07-20 | 2022-05-13 | 3.3 | 2.86 | 3.23 | 2.8 | 0.009 | 1.34 | 0.0 | 0.06 | 11.07 | 0.01 | 2.253 | 7.34 | 0.77 | 7.2 | 92.7 | 0.1 | -5.61 | 0.52 | 0.52 | 0.60 | 2.8 | 0.003 | 0.75 | 0.0 | 0.04 | 16.15 | 0.00 | 2.074 | 14.07 | 0.73 | 5.4 | 94.6 | 0.0 | -2.01 | 1.76 | 0.57 | 0.62 | 1.56 | 49848 | 6272 | 32 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LC5 | 4032 | 2023-07-20 | 2016-06-19 | 4.35 | 4.47 | 4.28 | 4.3 | 0.009 | 1.47 | 18.0 | 1.11 | 14.59 | 0.01 | 1.587 | 6.08 | 3.67 | 8.6 | 87.7 | 3.7 | -4.81 | 0.69 | 0.71 | — | 4.3 | 0.009 | 1.85 | 0.0 | 0.33 | 12.98 | 0.00 | 2.091 | 15.46 | 0.00 | 9.9 | 89.1 | 0.9 | -1.40 | 1.66 | 0.70 | 0.76 | — | 51718 | 5916 | 52 | 0 | 1988 | 0 | 0 | logfile |
✔ | 6oEF | 20020 | 2023-07-20 | 2019-03-27 | 3.8 | 3.98 | — | 3.8 | 0.007 | 1.67 | 0.0 | 0.07 | 11.76 | 0.01 | 2.376 | 3.96 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.47 | 0.78 | — | 3.8 | 0.006 | 1.21 | 0.0 | 0.05 | 6.00 | 0.00 | 2.197 | 8.15 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.58 | 0.49 | 0.80 | — | 51240 | 0 | 14 | 0 | 10248 | 0 | 0 | logfile |
✔ | 7NAV | 12249 | 2023-07-20 | 2021-01-25 | 4.8 | 5.56 | 5.08 | 3.1 | 0.009 | 1.02 | 8.0 | 0.06 | 17.76 | 0.02 | 1.065 | 43.40 | 0.00 | 7.0 | 93.0 | 0.0 | -2.28 | 0.89 | 0.80 | — | 3.0 | 0.004 | 0.71 | 0.0 | 0.04 | 16.83 | 0.01 | 1.891 | 37.23 | 0.00 | 5.3 | 94.6 | 0.0 | -1.01 | 0.81 | 0.91 | 0.86 | — | 52843 | 2595 | 24 | 1510 | 38 | 0 | 0 | logfile |
✘ | 6iGZ | 9670 | 2023-07-20 | 2018-09-27 | 3.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 51585 | 4518 | 44 | 0 | 320 | 0 | 0 | logfile |
✔ | 6SGT | 10184 | 2023-07-20 | 2019-08-05 | 3.46 | 3.54 | 3.37 | 3.5 | 0.004 | 0.72 | 0.0 | 0.04 | 12.56 | 0.00 | 2.205 | 8.28 | 0.29 | 4.5 | 95.4 | 0.1 | -4.71 | 0.65 | 0.79 | 2.46 | 3.5 | 0.004 | 0.65 | 0.0 | 0.04 | 15.39 | 0.00 | 1.861 | 8.95 | 0.44 | 5.0 | 95.0 | 0.0 | -0.76 | 2.29 | 0.67 | 0.83 | 2.15 | 52180 | 3408 | 5 | 0 | 0 | 0 | 26299 | logfile |