Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WDF	32437	2023-02-28	2021-12-21	3.9	4.20	—	4.0	0.002	0.51	0.0	0.04	7.63	0.00	2.170	7.44	0.00	4.3	95.6	0.1	-1.73	0.54	0.40	0.73	4.0	0.003	0.79	0.0	0.05	14.33	0.00	2.088	18.37	0.45	4.6	95.4	0.0	-0.96	1.62	0.76	0.71	0.54	31998	4101	7	0	0	0	0	logfile
✔	6UD4	20733	2023-02-28	2019-09-18	3.3	3.63	—	3.5	0.008	0.63	0.0	0.06	13.23	0.01	2.022	6.34	0.12	5.2	94.8	0.0	-3.11	0.65	0.74	1.46	3.5	0.002	0.53	0.0	0.05	14.37	0.00	2.001	8.39	0.24	4.1	95.9	0.0	0.74	1.77	0.66	0.75	1.76	31642	2044	15	0	12	0	15470	logfile
✘	6RBE	4795	2023-02-28	2019-04-10	3.8	3.81	4.03	5.1	0.007	1.27	0.0	0.06	18.44	0.01	2.076	9.10	1.35	11.9	86.8	1.2	-4.17	0.38	0.09	0.25	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72721	4512	33	1750	0	0	0	logfile
✔	7WTF	32784	2023-02-28	2022-02-04	3.0	3.29	—	3.3	0.006	0.97	6.0	0.06	14.54	0.01	2.278	6.28	0.52	7.1	92.7	0.2	-3.03	0.71	0.76	1.88	3.2	0.004	0.65	0.0	0.05	15.97	0.00	2.105	10.20	2.20	5.6	94.3	0.1	-1.27	0.64	0.74	0.82	2.05	32049	3966	32	0	75	0	0	logfile
✔	6MPH	9189	2023-02-28	2018-10-06	3.8	4.28	—	3.9	0.006	0.79	0.0	0.05	12.56	0.01	2.286	6.11	6.01	5.3	94.6	0.2	-3.46	0.84	0.85	2.34	3.9	0.003	0.71	0.0	0.04	14.13	0.00	2.014	14.18	0.15	5.4	94.6	0.0	-1.14	0.75	0.84	0.86	1.98	32092	3843	72	0	155	0	0	logfile
✔	6U6i	20666	2023-02-28	2019-08-29	3.12	3.43	—	3.4	0.006	0.45	0.0	0.07	11.24	0.00	2.029	6.12	0.00	7.6	92.4	0.0	-3.59	0.80	0.80	4.39	3.3	0.003	0.47	0.0	0.04	13.04	0.00	2.092	5.94	0.09	5.0	95.0	0.0	-0.18	0.51	0.81	0.83	4.16	21701	1496	9	0	11	0	10337	logfile
✔	6D6Q	7808	2023-02-28	2018-04-22	3.45	3.57	—	3.5	0.006	0.74	0.0	0.05	10.12	0.00	1.778	9.85	0.06	9.9	90.1	0.0	-4.46	0.79	0.77	2.28	3.5	0.003	0.65	0.0	0.04	15.25	0.00	2.151	10.18	0.45	4.2	95.8	0.0	-0.40	0.88	0.82	0.83	1.48	31639	3889	17	61	3	0	0	logfile
✔	7YQY	34039	2023-02-28	2022-08-08	3.74	4.03	3.84	3.9	0.003	0.60	0.0	0.06	14.10	0.01	1.925	10.62	0.18	9.0	90.9	0.1	-2.25	0.80	0.81	1.73	3.9	0.006	0.71	0.0	0.05	15.58	0.00	2.091	13.72	0.41	11.0	88.9	0.0	-2.00	1.16	0.81	0.82	1.54	31983	3984	25	0	75	0	0	logfile
✔	6Q9E	4481	2023-02-28	2018-12-18	3.9	4.09	3.86	4.0	0.009	1.07	0.0	0.06	12.26	0.01	1.981	5.19	0.42	8.5	91.5	0.0	-3.51	0.72	0.80	2.31	4.0	0.004	0.76	0.0	0.04	15.99	0.00	2.152	13.05	0.60	6.4	93.6	0.0	-0.15	0.88	0.73	0.81	1.49	31997	3925	26	0	83	0	0	logfile
✔	7UAP	26429	2023-02-28	2022-03-13	2.8	2.98	2.85	3.0	0.007	1.25	12.0	0.07	13.61	0.01	2.041	19.84	0.29	7.1	92.4	0.6	-2.28	0.64	0.65	1.45	3.0	0.004	0.79	0.0	0.05	16.11	0.00	2.097	13.13	3.25	7.4	92.4	0.2	-1.50	1.91	0.67	0.77	1.92	31657	3957	27	0	59	0	0	logfile
✔	7KoQ	22980	2023-02-28	2020-11-09	3.6	3.43	3.78	3.5	0.012	0.80	0.0	0.08	12.20	0.00	1.967	6.30	0.57	3.7	96.3	0.0	0.04	0.59	0.81	3.01	3.5	0.005	0.69	4.0	0.07	14.66	0.00	1.990	6.98	0.06	1.9	98.1	0.0	1.25	1.42	0.58	0.80	3.19	31760	1955	15	0	30	0	15640	logfile
✘	8DDU	27342	2023-02-28	2022-06-19	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32230	3872	12	0	82	0	0	logfile
✔	4V1A	2787	2023-02-28	2014-09-25	3.4	3.43	—	3.4	0.009	1.29	0.0	0.05	13.81	0.01	2.067	12.17	6.03	4.6	95.3	0.1	-2.62	0.37	0.78	1.69	3.4	0.003	0.70	0.0	0.04	16.87	0.00	2.083	10.93	0.29	4.4	95.5	0.1	0.59	1.92	0.38	0.79	1.76	31917	3843	24	0	94	0	0	logfile
✘	8ED9	28033	2023-02-28	2022-09-03	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32229	3872	12	0	81	0	0	logfile
✔	6Y59	10691	2023-02-28	2020-02-25	3.2	4.61	3.12	3.4	0.008	0.94	0.0	0.05	12.32	0.01	2.376	3.45	0.00	1.2	98.8	0.0	-3.39	0.92	0.84	2.09	3.4	0.003	0.54	0.0	0.04	13.28	0.00	2.138	9.31	0.11	3.0	97.0	0.0	0.53	1.17	0.93	0.87	2.33	31910	1915	5	0	0	0	16045	logfile
✔	7PBP	13298	2023-02-28	2021-08-02	3.2	3.11	—	3.2	0.004	0.73	0.0	0.04	14.69	0.01	1.860	1.52	0.12	1.0	99.0	0.0	-0.71	0.79	0.83	2.81	3.2	0.003	0.57	0.0	0.04	16.76	0.00	1.827	3.17	0.18	2.1	97.9	0.0	1.23	0.81	0.80	0.86	2.23	32077	1968	16	30	9	0	15818	logfile
✔	8GXX	34364	2023-02-27	2022-09-21	3.0	2.61	3.12	2.9	0.006	0.56	0.0	0.04	11.56	0.00	1.758	5.57	0.06	3.0	96.9	0.0	0.65	0.67	0.82	3.77	2.8	0.003	0.59	0.0	0.04	16.97	0.00	1.956	7.51	2.76	2.1	97.9	0.0	0.94	1.10	0.74	0.85	3.19	29553	3788	15	0	5	0	0	logfile
✔	8GXU	34362	2023-02-27	2022-09-21	2.5	2.02	2.54	2.3	0.007	0.57	0.0	0.05	14.47	0.01	1.855	4.64	0.00	3.2	96.8	0.0	0.82	0.64	0.79	4.52	2.2	0.003	0.57	0.0	0.04	17.35	0.00	2.124	6.63	1.27	2.3	97.7	0.0	1.06	1.36	0.70	0.83	4.00	29503	3788	15	0	3	0	0	logfile
✔	6UDQ	20743	2023-02-27	2019-09-19	3.27	3.39	3.21	3.5	0.014	1.19	1.0	0.06	14.70	0.01	2.239	4.98	1.09	6.0	94.0	0.0	-3.91	0.64	0.86	3.74	3.5	0.004	0.70	0.0	0.05	16.02	0.00	2.124	11.70	0.37	5.3	94.7	0.0	-0.78	1.29	0.62	0.87	2.73	31008	3956	20	0	32	0	0	logfile
✔	7U8o	26385	2023-02-27	2022-03-09	3.5	4.15	3.57	2.1	0.009	1.36	29.0	0.08	15.17	0.01	2.204	7.40	5.89	4.5	95.2	0.3	0.53	0.86	0.83	1.60	2.2	0.003	0.73	0.0	0.04	14.94	0.00	2.089	15.37	0.21	3.9	96.1	0.0	1.44	1.41	0.86	0.84	1.15	68632	9348	36	0	0	0	0	logfile

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