Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8AKN	15488	2023-07-21	2022-07-30	2.3	1.94	2.20	2.2	0.013	1.78	0.0	0.17	14.48	0.02	1.528	3.25	2.19	5.9	93.2	0.9	-3.31	0.61	0.80	5.18	2.1	0.005	0.79	0.0	0.04	15.02	0.01	1.767	7.21	2.33	2.6	97.3	0.1	-0.01	1.22	0.72	0.85	4.95	146513	5960	103	4552	309	1754	0	logfile
✔	5JTE	8175	2023-07-21	2016-05-09	3.6	3.13	—	3.2	0.015	1.75	0.0	0.07	12.22	0.01	1.432	6.25	0.00	7.4	90.0	2.7	-1.94	0.53	0.56	0.78	3.1	0.006	0.90	0.0	0.05	16.17	0.01	2.025	16.45	1.18	10.2	89.1	0.8	-2.75	1.48	0.58	0.68	1.21	146760	5625	59	4786	1	0	0	logfile
✔	7oJ0	12937	2023-07-21	2021-05-13	3.5	3.49	—	3.3	0.006	0.84	1.0	0.04	14.16	0.02	1.995	7.15	0.16	4.4	95.5	0.1	-1.32	0.87	0.88	2.11	3.3	0.004	0.70	0.0	0.04	14.86	0.01	1.827	15.59	0.95	5.1	94.8	0.1	-0.70	0.39	0.87	0.88	1.70	146507	6266	66	4525	310	0	0	logfile
✔	6WD1	21620	2023-07-21	2020-03-31	3.3	3.61	3.63	3.4	0.006	0.94	0.0	0.08	13.39	0.01	2.219	11.79	0.55	10.6	87.9	1.5	-5.05	0.82	0.83	1.64	3.4	0.005	0.68	0.0	0.04	15.58	0.00	2.015	18.97	0.77	9.9	89.9	0.1	-2.20	0.68	0.83	0.85	1.26	146942	6023	56	4657	0	0	0	logfile
✔	7R4Q	14314	2023-07-20	2022-02-09	3.6	3.14	—	5.7	0.022	3.26	109.0	0.39	15.97	0.02	1.450	30.29	3.30	8.7	91.1	0.2	-2.35	0.48	0.21	-0.05	4.0	0.011	1.13	8.0	0.17	15.61	0.01	1.762	27.43	0.44	10.0	90.0	0.0	-2.21	1.76	0.63	0.58	0.35	51420	3414	13	0	43	0	24182	logfile
✔	7R4R	14315	2023-07-20	2022-02-09	3.9	4.20	—	6.8	0.036	4.11	135.0	0.31	17.67	0.03	1.228	59.98	7.44	8.5	91.3	0.2	-3.20	0.62	0.41	-0.13	5.8	0.004	1.38	17.0	0.24	16.50	0.00	1.894	28.07	2.09	8.3	91.6	0.1	-2.33	1.31	0.68	0.60	-0.04	50505	3293	12	0	43	0	24171	logfile
✘	7A4P	11640	2023-07-20	2020-08-20	4.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	48636	4086	38	0	337	0	0	logfile
✔	5o31	3731	2023-07-20	2017-05-23	4.13	4.19	—	4.1	0.008	1.37	11.0	1.11	13.96	0.01	2.512	2.82	2.22	9.3	88.3	2.4	-4.78	0.70	0.73	—	4.1	0.009	1.83	0.0	0.33	12.96	0.00	1.968	13.88	0.03	9.7	90.0	0.4	-1.69	2.19	0.71	0.76	—	52703	7006	52	0	816	0	0	logfile
✘	6SL5	10236	2023-07-20	2019-08-18	2.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	43789	3744	36	0	292	0	0	logfile
✔	8E4P	27895	2023-07-20	2022-08-18	3.59	4.02	3.50	3.9	0.004	0.75	0.0	0.05	13.14	0.00	2.242	7.79	0.00	3.0	97.0	0.0	2.88	0.65	0.74	1.40	3.8	0.003	0.47	0.0	0.03	13.81	0.00	2.116	8.42	0.16	3.2	96.8	0.0	2.77	0.46	0.66	0.76	1.18	51336	3596	8	0	12	0	24392	logfile
✔	7NAT	12247	2023-07-20	2021-01-25	3.59	4.72	3.68	2.6	0.009	0.84	6.0	0.05	15.94	0.02	0.616	27.68	0.00	7.4	92.6	0.0	-3.28	0.90	0.81	0.72	2.5	0.004	0.69	0.0	0.03	16.22	0.01	1.845	26.16	0.52	4.7	95.3	0.0	-1.07	1.32	0.92	0.87	0.63	50921	2562	25	1430	66	0	0	logfile
✔	7R4i	14313	2023-07-20	2022-02-08	3.2	2.65	—	3.2	0.019	1.00	2.0	0.05	14.27	0.01	1.819	36.30	0.17	13.1	86.9	0.1	-5.90	0.65	0.65	1.25	3.2	0.015	0.74	2.0	0.05	16.01	0.00	1.893	21.00	0.40	6.6	93.4	0.0	-2.28	1.27	0.69	0.73	1.64	51473	3423	13	0	43	0	24148	logfile
✔	7L5W	23191	2023-07-20	2020-12-23	3.34	3.25	—	3.6	0.006	1.01	0.0	0.06	14.60	0.01	2.172	11.17	0.00	6.8	93.2	0.0	-2.74	0.70	0.77	2.23	3.6	0.003	0.63	0.0	0.05	16.48	0.00	2.033	14.35	0.22	6.0	94.0	0.0	-0.34	0.56	0.70	0.78	1.75	51828	6636	12	0	0	0	0	logfile
✔	7WTQ	32795	2023-07-20	2022-02-05	3.7	3.57	—	3.4	0.005	0.90	0.0	0.05	16.33	0.01	2.146	6.91	0.04	8.0	91.8	0.1	-1.90	0.82	0.79	1.74	3.4	0.007	0.81	0.0	0.04	17.09	0.01	1.974	17.27	0.91	9.7	90.2	0.1	-1.27	1.14	0.83	0.81	1.24	51309	3079	19	1255	1	0	0	logfile
✔	7XSD	33524	2023-07-20	2022-05-13	3.3	2.86	3.23	2.8	0.009	1.34	0.0	0.06	11.07	0.01	2.253	7.34	0.77	7.2	92.7	0.1	-5.61	0.52	0.52	0.60	2.8	0.003	0.75	0.0	0.04	16.15	0.00	2.074	14.07	0.73	5.4	94.6	0.0	-2.01	1.76	0.57	0.62	1.56	49848	6272	32	0	0	0	0	logfile
✔	5LC5	4032	2023-07-20	2016-06-19	4.35	4.47	4.28	4.3	0.009	1.47	18.0	1.11	14.59	0.01	1.587	6.08	3.67	8.6	87.7	3.7	-4.81	0.69	0.71	—	4.3	0.009	1.85	0.0	0.33	12.98	0.00	2.091	15.46	0.00	9.9	89.1	0.9	-1.40	1.66	0.70	0.76	—	51718	5916	52	0	1988	0	0	logfile
✔	6oEF	20020	2023-07-20	2019-03-27	3.8	3.98	—	3.8	0.007	1.67	0.0	0.07	11.76	0.01	2.376	3.96	0.00	0.0	0.0	0.0	—	0.47	0.78	—	3.8	0.006	1.21	0.0	0.05	6.00	0.00	2.197	8.15	0.00	0.0	0.0	0.0	—	0.58	0.49	0.80	—	51240	0	14	0	10248	0	0	logfile
✔	7NAV	12249	2023-07-20	2021-01-25	4.8	5.56	5.08	3.1	0.009	1.02	8.0	0.06	17.76	0.02	1.065	43.40	0.00	7.0	93.0	0.0	-2.28	0.89	0.80	—	3.0	0.004	0.71	0.0	0.04	16.83	0.01	1.891	37.23	0.00	5.3	94.6	0.0	-1.01	0.81	0.91	0.86	—	52843	2595	24	1510	38	0	0	logfile
✘	6iGZ	9670	2023-07-20	2018-09-27	3.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	51585	4518	44	0	320	0	0	logfile
✔	6SGT	10184	2023-07-20	2019-08-05	3.46	3.54	3.37	3.5	0.004	0.72	0.0	0.04	12.56	0.00	2.205	8.28	0.29	4.5	95.4	0.1	-4.71	0.65	0.79	2.46	3.5	0.004	0.65	0.0	0.04	15.39	0.00	1.861	8.95	0.44	5.0	95.0	0.0	-0.76	2.29	0.67	0.83	2.15	52180	3408	5	0	0	0	26299	logfile

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