Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6JCV	9798	2023-08-21	2019-01-30	2.92	4.05	—	3.7	0.007	0.90	0.0	0.06	13.94	0.01	2.341	5.00	0.00	5.2	94.8	0.0	-5.68	0.87	0.86	3.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30876	3912	31	0	24	96	0	logfile
✔	6JC3	9793	2023-08-09	2019-01-28	4.8	4.87	—	4.8	0.010	1.35	2.0	0.07	15.57	0.01	1.512	30.30	3.10	10.1	89.1	0.8	-4.39	0.42	0.78	—	4.7	0.004	0.77	0.0	0.04	13.92	0.00	2.100	14.75	0.00	6.5	93.5	0.0	0.86	4.22	0.43	0.81	—	3154	391	2	6	0	0	0	logfile
✔	6JBQ	9792	2023-08-19	2019-01-26	4.02	4.10	3.96	4.1	0.003	0.70	0.0	0.05	16.33	0.01	2.197	4.02	0.39	3.9	96.1	0.0	-4.13	0.77	0.79	—	4.0	0.002	0.60	0.0	0.04	16.59	0.00	2.156	8.17	0.07	3.7	96.3	0.0	-0.42	1.59	0.79	0.81	—	28163	3347	10	101	3	0	0	logfile
✔	6JBJ	9791	2023-08-11	2019-01-25	3.6	3.75	—	3.7	0.008	1.04	0.0	0.06	16.15	0.01	2.206	10.64	0.00	9.1	90.9	0.0	-6.19	0.65	0.83	2.03	3.7	0.004	0.77	0.0	0.04	18.34	0.00	2.084	18.07	0.59	8.7	91.3	0.0	-2.08	0.61	0.65	0.82	1.17	9166	1130	4	0	2	0	0	logfile
✔	6JBH	9790	2023-08-10	2019-01-25	3.94	4.06	—	4.0	0.007	1.23	0.0	0.07	12.50	0.03	2.260	6.09	0.53	14.3	85.5	0.2	-5.84	0.68	0.81	2.48	4.0	0.004	0.96	0.0	0.05	16.03	0.00	2.205	14.25	0.85	15.5	84.5	0.0	-2.08	0.98	0.68	0.81	2.06	8592	1062	4	0	0	0	0	logfile
✔	6JB1	9787	2023-08-27	2019-01-25	3.3	3.82	—	3.7	0.008	1.06	0.0	0.58	16.69	0.00	2.257	10.49	6.21	4.9	95.1	0.0	-2.18	0.61	0.66	1.59	3.7	0.003	0.90	0.0	0.08	16.85	0.00	2.200	11.26	0.46	3.1	96.9	0.0	1.03	0.73	0.67	0.75	1.37	52028	6772	16	0	68	0	0	logfile
✔	6J9E	9785	2023-08-18	2019-01-22	3.41	3.55	3.48	3.5	0.003	0.61	0.0	0.04	14.31	0.01	2.198	2.44	0.05	3.0	97.0	0.0	-3.74	0.76	0.79	1.49	3.5	0.004	0.62	0.0	0.04	16.64	0.00	1.998	6.84	0.54	3.7	96.3	0.0	0.16	0.63	0.80	0.84	1.55	24427	3203	11	63	3	0	0	logfile
✔	6J99	9783	2023-08-16	2019-01-22	4.1	4.24	—	4.2	0.008	0.98	1.0	0.05	26.78	0.01	2.204	7.71	0.00	8.0	92.0	0.0	-2.88	0.65	0.52	—	4.1	0.004	0.77	0.0	0.04	27.36	0.01	2.114	19.04	0.00	6.3	93.7	0.0	-0.75	2.23	0.78	0.78	—	15266	1164	12	289	0	0	0	logfile
✔	6J8J	9782	2023-08-12	2019-01-19	3.2	3.36	—	3.3	0.010	1.51	0.0	0.16	22.07	0.01	1.829	71.00	28.80	2.5	96.2	1.3	2.79	0.59	0.76	1.66	3.4	0.004	0.79	0.0	0.06	18.17	0.00	2.139	9.51	0.47	3.9	95.9	0.2	0.53	1.44	0.60	0.83	1.73	11764	1433	8	0	12	0	0	logfile
✔	6J8i	9782	2023-08-12	2019-01-19	3.2	3.36	—	3.3	0.010	1.51	0.0	0.16	22.06	0.01	1.829	71.34	28.73	2.5	96.2	1.3	2.78	0.59	0.76	1.66	3.4	0.004	0.81	0.0	0.06	18.15	0.00	2.127	9.72	0.54	4.2	95.6	0.2	0.81	0.93	0.60	0.83	1.64	11764	1433	8	0	12	0	0	logfile
✔	6J8H	9781	2023-08-12	2019-01-19	3.2	3.35	—	3.3	0.010	1.54	1.0	0.10	21.80	0.01	1.886	58.60	27.17	2.0	96.6	1.3	2.87	0.60	0.78	1.53	3.3	0.003	0.71	0.0	0.04	18.34	0.00	2.192	7.82	0.23	4.2	95.6	0.3	0.70	0.79	0.61	0.84	1.85	11763	1433	8	0	12	0	0	logfile
✔	6J8G	9781	2023-08-12	2019-01-19	3.2	3.35	—	3.3	0.010	1.54	1.0	0.10	21.81	0.01	1.886	58.56	27.17	2.0	96.6	1.3	2.85	0.60	0.78	1.54	3.3	0.004	0.74	0.0	0.04	18.34	0.00	2.169	8.03	0.70	4.1	95.6	0.3	0.60	0.80	0.61	0.84	1.79	11763	1433	8	0	12	0	0	logfile
✔	6J8E	9780	2023-08-12	2019-01-18	3.0	3.18	—	3.2	0.008	1.43	4.0	0.08	13.94	0.01	1.927	13.58	5.14	6.4	92.6	1.0	-5.60	0.61	0.77	3.02	3.2	0.003	0.79	0.0	0.04	16.50	0.00	2.238	7.50	2.18	4.8	94.8	0.4	0.64	0.87	0.61	0.85	2.29	10482	1277	7	0	10	0	0	logfile
✔	6J40	9777	2023-08-23	2019-01-07	3.8	4.30	—	3.8	0.022	1.99	4.0	0.18	19.03	0.01	1.376	17.72	0.33	4.5	95.5	0.0	-5.08	0.80	0.72	1.93	3.8	0.003	0.74	0.0	0.04	16.50	0.00	1.533	17.03	0.24	4.1	95.9	0.0	-0.09	0.70	0.84	0.77	1.57	96390	8392	120	0	1656	0	0	logfile
✔	6J3Z	9776	2023-08-18	2019-01-07	3.6	3.78	—	3.6	0.019	1.82	4.0	0.15	17.99	0.01	1.392	13.61	0.28	4.3	95.7	0.0	-5.08	0.80	0.81	3.43	3.6	0.004	0.71	0.0	0.04	17.15	0.00	1.596	14.19	0.59	3.4	96.6	0.0	-0.05	0.75	0.80	0.82	2.53	74619	6984	97	0	978	0	0	logfile
✔	6J3Y	9775	2023-08-16	2019-01-07	3.3	3.49	—	3.4	0.019	1.77	4.0	0.14	17.37	0.01	1.372	10.02	0.32	4.1	95.9	0.0	-5.09	0.77	0.84	3.85	3.4	0.003	0.66	0.0	0.04	16.70	0.00	2.007	12.44	0.34	3.4	96.6	0.0	0.14	0.65	0.78	0.87	2.88	70136	6984	90	0	428	0	0	logfile
✔	6J30	9773	2023-08-09	2019-01-03	4.5	4.74	—	4.6	0.002	0.44	0.0	0.04	7.35	0.00	2.093	8.60	0.07	6.4	93.4	0.3	-3.38	0.86	0.72	—	4.5	0.004	0.76	0.0	0.04	12.18	0.00	1.918	21.54	0.01	5.4	94.4	0.2	-0.88	1.91	0.89	0.77	—	106227	13504	47	0	0	0	0	logfile
✔	6J2X	9772	2023-08-09	2019-01-03	3.8	3.99	—	3.9	0.002	0.40	0.0	0.04	7.12	0.00	2.220	6.65	0.00	5.8	94.1	0.1	-3.52	0.80	0.70	0.49	3.9	0.004	0.78	1.0	0.04	15.31	0.00	2.050	18.52	0.40	4.7	95.2	0.1	-0.69	1.88	0.84	0.78	0.88	106176	13501	47	0	0	0	0	logfile
✔	6J2Q	9771	2023-08-09	2019-01-02	3.8	3.95	—	3.9	0.002	0.40	0.0	0.04	7.17	0.00	2.202	6.58	0.00	5.5	94.4	0.1	-3.50	0.77	0.68	0.88	3.9	0.003	0.74	0.0	0.04	15.50	0.00	2.058	15.76	0.38	4.1	95.8	0.1	-0.48	2.27	0.82	0.76	1.06	106311	13518	47	0	0	0	0	logfile
✔	6J0M	9764	2023-08-12	2018-12-24	3.9	3.79	—	3.8	0.007	0.98	0.0	0.06	15.91	0.01	2.282	6.73	0.87	5.2	94.8	0.0	-4.05	0.52	0.82	1.83	3.8	0.003	0.66	0.0	0.05	17.65	0.00	2.174	12.35	0.22	5.9	94.1	0.0	-1.95	1.29	0.52	0.82	1.43	12585	1605	3	0	0	0	0	logfile

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