Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6iRo	9720	2023-02-21	2018-11-13	3.4	3.71	—	3.4	0.010	1.07	0.0	0.06	26.34	0.01	2.262	4.09	0.74	5.9	94.1	0.0	-4.09	0.87	0.85	2.33	3.4	0.007	0.72	0.0	0.04	26.33	0.00	2.074	11.37	0.84	5.4	94.6	0.0	-0.06	1.65	0.88	0.87	1.48	16108	1262	12	292	1	0	0	logfile
✔	6iRA	9714	2023-02-24	2018-11-12	4.5	5.18	—	5.1	0.009	1.42	13.0	0.07	8.45	0.01	1.413	20.24	0.12	10.0	89.1	0.9	-3.53	0.60	0.69	—	5.1	0.004	0.81	0.0	0.05	12.47	0.00	2.118	21.30	0.08	8.8	90.9	0.3	-1.42	2.19	0.61	0.73	—	23932	3080	4	0	0	0	0	logfile
✔	6iQW	9708	2023-02-22	2018-11-09	3.35	3.98	—	3.9	0.007	1.05	1.0	0.06	15.76	0.01	1.757	8.27	0.35	13.5	86.1	0.4	-4.93	0.60	0.74	1.41	3.9	0.004	0.81	0.0	0.05	17.43	0.01	2.068	18.68	1.05	11.6	88.3	0.1	-2.28	3.24	0.61	0.76	1.22	16935	2073	8	24	1	0	0	logfile
✘	6iP2	9698	2023-02-25	2018-11-01	3.7	3.82	—	3.8	0.008	1.38	0.0	0.06	11.73	0.01	2.237	6.67	0.26	12.2	87.7	0.1	-5.47	0.70	0.77	1.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24660	3120	12	0	12	0	0	logfile
✔	6iP1	9697	2023-02-20	2018-11-01	3.9	4.05	—	4.0	0.006	1.03	0.0	0.05	11.71	0.00	1.321	7.91	0.34	7.5	92.5	0.0	-5.85	0.59	0.72	1.01	4.0	0.004	0.93	0.0	0.05	18.31	0.00	2.178	17.84	0.76	8.1	91.9	0.0	-0.42	1.25	0.61	0.75	0.15	11245	1420	8	0	0	0	0	logfile
✔	6iJZ	9682	2023-02-19	2018-10-12	3.68	3.76	—	3.7	0.008	1.11	0.0	0.06	10.64	0.01	2.000	4.54	0.69	10.9	88.8	0.3	-5.03	0.57	0.80	2.19	3.7	0.003	0.75	0.0	0.04	15.50	0.01	2.038	9.86	0.60	8.6	91.3	0.1	-0.44	1.50	0.59	0.80	1.85	10964	1366	2	0	0	0	0	logfile
✘	6iGM	9668	2023-02-24	2018-09-25	4.0	4.14	—	4.1	0.004	0.88	0.0	0.05	10.13	0.01	1.054	20.76	2.70	7.3	91.6	1.1	-4.30	0.70	0.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24257	3054	9	0	62	0	0	logfile
✔	6iG9	9664	2023-02-22	2018-09-25	4.6	5.44	4.27	4.3	0.007	1.07	0.0	0.05	9.51	0.01	2.299	9.69	0.73	10.2	89.7	0.2	-3.99	0.69	0.65	—	4.2	0.003	0.66	0.0	0.04	5.17	0.00	2.218	2.46	0.00	9.7	90.3	0.0	0.91	1.56	0.87	0.72	—	17122	3386	1	0	0	0	0	logfile
✔	6iG0	9660	2023-02-23	2018-09-21	3.37	3.49	—	3.4	0.009	1.18	5.0	0.07	12.62	0.01	1.102	14.76	1.40	10.4	89.4	0.1	-5.65	0.75	0.80	2.88	3.4	0.003	0.71	0.0	0.04	16.44	0.00	1.950	14.28	0.75	9.1	90.9	0.0	-2.26	1.35	0.76	0.82	2.06	19354	2258	11	67	5	0	0	logfile
✔	6iFZ	9659	2023-02-23	2018-09-21	3.58	3.57	—	3.5	0.008	1.15	2.0	0.07	16.35	0.01	1.258	12.63	0.96	10.7	88.8	0.5	-5.16	0.72	0.80	2.37	3.5	0.005	0.77	0.0	0.05	17.67	0.00	1.983	15.01	0.70	10.0	89.9	0.1	-2.31	1.66	0.73	0.80	1.85	19185	2254	11	62	1	0	0	logfile
✔	6iFY	9658	2023-02-23	2018-09-21	3.8	4.00	—	3.9	0.005	1.03	3.0	0.06	15.92	0.01	1.733	12.36	0.81	10.7	89.0	0.3	-5.14	0.71	0.73	1.09	3.9	0.004	0.78	0.0	0.04	17.78	0.00	2.094	21.00	0.43	9.9	90.0	0.1	-2.91	1.34	0.72	0.75	0.84	19085	2253	11	62	1	0	0	logfile
✔	6iFU	9657	2023-02-22	2018-09-21	3.05	3.12	—	3.1	0.012	1.40	0.0	0.08	13.49	0.01	2.207	7.65	1.42	13.9	85.4	0.7	-4.96	0.67	0.80	3.58	3.1	0.003	0.71	0.0	0.04	16.75	0.00	2.017	13.96	0.49	11.5	88.2	0.3	-1.52	0.84	0.68	0.82	2.12	18750	2201	10	62	0	0	0	logfile
✔	6iFR	9656	2023-02-23	2018-09-21	3.4	3.49	—	3.4	0.007	1.16	3.0	0.06	12.48	0.01	1.558	8.82	1.13	12.0	87.7	0.3	-5.42	0.75	0.80	3.14	3.4	0.003	0.74	0.0	0.04	16.39	0.00	1.941	16.69	0.38	10.8	89.1	0.0	-2.64	1.35	0.77	0.84	2.43	19219	2216	11	70	4	0	0	logfile
✔	6iFL	9654	2023-02-22	2018-09-20	3.16	3.26	—	3.2	0.010	1.27	0.0	0.07	13.06	0.01	2.201	6.54	1.10	12.2	87.4	0.4	-4.69	0.74	0.81	3.15	3.2	0.003	0.75	0.0	0.04	16.68	0.00	2.078	14.05	0.55	10.9	89.0	0.0	-1.67	2.45	0.75	0.84	2.11	18845	2193	10	70	0	0	0	logfile
✔	6iFK	9653	2023-02-23	2018-09-20	3.2	3.32	—	3.3	0.009	1.20	1.0	0.06	12.74	0.01	2.046	6.33	1.01	10.7	89.0	0.3	-4.87	0.74	0.82	3.58	3.3	0.004	0.68	0.0	0.04	16.18	0.00	1.936	12.80	0.37	10.3	89.7	0.0	-2.09	0.70	0.76	0.85	2.81	19448	2256	11	67	5	0	0	logfile
✔	6iDF	9648	2023-02-20	2018-09-09	2.7	2.83	—	2.9	0.007	1.15	0.0	0.06	12.10	0.01	2.279	3.96	0.44	6.8	93.0	0.1	-4.02	0.66	0.82	3.23	2.9	0.003	0.65	0.0	0.04	15.93	0.00	2.111	5.39	2.81	6.0	94.0	0.0	-0.34	1.26	0.67	0.85	2.26	11188	1363	15	0	28	0	0	logfile
✔	6AHU	9627	2023-02-27	2018-08-20	3.66	3.79	—	3.7	0.003	0.77	0.0	0.04	11.49	0.01	2.284	4.88	0.09	9.8	89.9	0.2	-5.26	0.74	0.67	0.96	3.7	0.003	0.72	0.0	0.04	15.31	0.00	2.047	15.30	0.44	10.6	89.4	0.0	-2.25	2.99	0.78	0.75	0.88	29386	2595	14	413	1	0	0	logfile
✔	6AHR	9626	2023-02-26	2018-08-20	3.92	4.05	—	3.9	0.004	0.96	0.0	0.05	12.84	0.01	1.742	9.87	0.13	10.2	89.6	0.3	-4.23	0.71	0.61	0.54	3.9	0.005	0.87	0.0	0.04	16.28	0.01	2.063	22.59	0.79	12.1	87.8	0.1	-2.17	2.79	0.78	0.76	0.28	27851	2595	13	341	1	0	0	logfile
✔	6AH3	9622	2023-02-26	2018-08-16	3.48	3.57	—	3.5	0.004	0.83	0.0	0.05	13.19	0.01	1.476	7.98	0.18	6.0	93.9	0.0	-3.57	0.62	0.58	0.49	3.5	0.003	0.63	0.0	0.04	15.70	0.00	2.020	12.80	0.60	5.6	94.4	0.0	-0.24	2.24	0.73	0.79	1.56	28703	2380	14	449	3	0	0	logfile
✔	6AGF	9617	2023-02-19	2018-08-11	3.2	3.30	—	3.3	0.014	1.53	0.0	0.07	16.24	0.01	2.059	9.38	5.06	6.0	93.5	0.5	-4.93	0.62	0.84	3.52	3.3	0.003	0.66	0.0	0.04	16.24	0.00	2.187	6.36	0.26	4.7	95.2	0.1	0.73	0.67	0.62	0.85	2.11	10980	1311	7	0	16	0	0	logfile

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