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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6JCV | 9798 | 2023-08-21 | 2019-01-30 | 2.92 | 4.05 | — | 3.7 | 0.007 | 0.90 | 0.0 | 0.06 | 13.94 | 0.01 | 2.341 | 5.00 | 0.00 | 5.2 | 94.8 | 0.0 | -5.68 | 0.87 | 0.86 | 3.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30876 | 3912 | 31 | 0 | 24 | 96 | 0 | logfile |
✔ | 6JC3 | 9793 | 2023-08-09 | 2019-01-28 | 4.8 | 4.87 | — | 4.8 | 0.010 | 1.35 | 2.0 | 0.07 | 15.57 | 0.01 | 1.512 | 30.30 | 3.10 | 10.1 | 89.1 | 0.8 | -4.39 | 0.42 | 0.78 | — | 4.7 | 0.004 | 0.77 | 0.0 | 0.04 | 13.92 | 0.00 | 2.100 | 14.75 | 0.00 | 6.5 | 93.5 | 0.0 | 0.86 | 4.22 | 0.43 | 0.81 | — | 3154 | 391 | 2 | 6 | 0 | 0 | 0 | logfile |
✔ | 6JBQ | 9792 | 2023-08-19 | 2019-01-26 | 4.02 | 4.10 | 3.96 | 4.1 | 0.003 | 0.70 | 0.0 | 0.05 | 16.33 | 0.01 | 2.197 | 4.02 | 0.39 | 3.9 | 96.1 | 0.0 | -4.13 | 0.77 | 0.79 | — | 4.0 | 0.002 | 0.60 | 0.0 | 0.04 | 16.59 | 0.00 | 2.156 | 8.17 | 0.07 | 3.7 | 96.3 | 0.0 | -0.42 | 1.59 | 0.79 | 0.81 | — | 28163 | 3347 | 10 | 101 | 3 | 0 | 0 | logfile |
✔ | 6JBJ | 9791 | 2023-08-11 | 2019-01-25 | 3.6 | 3.75 | — | 3.7 | 0.008 | 1.04 | 0.0 | 0.06 | 16.15 | 0.01 | 2.206 | 10.64 | 0.00 | 9.1 | 90.9 | 0.0 | -6.19 | 0.65 | 0.83 | 2.03 | 3.7 | 0.004 | 0.77 | 0.0 | 0.04 | 18.34 | 0.00 | 2.084 | 18.07 | 0.59 | 8.7 | 91.3 | 0.0 | -2.08 | 0.61 | 0.65 | 0.82 | 1.17 | 9166 | 1130 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6JBH | 9790 | 2023-08-10 | 2019-01-25 | 3.94 | 4.06 | — | 4.0 | 0.007 | 1.23 | 0.0 | 0.07 | 12.50 | 0.03 | 2.260 | 6.09 | 0.53 | 14.3 | 85.5 | 0.2 | -5.84 | 0.68 | 0.81 | 2.48 | 4.0 | 0.004 | 0.96 | 0.0 | 0.05 | 16.03 | 0.00 | 2.205 | 14.25 | 0.85 | 15.5 | 84.5 | 0.0 | -2.08 | 0.98 | 0.68 | 0.81 | 2.06 | 8592 | 1062 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6JB1 | 9787 | 2023-08-27 | 2019-01-25 | 3.3 | 3.82 | — | 3.7 | 0.008 | 1.06 | 0.0 | 0.58 | 16.69 | 0.00 | 2.257 | 10.49 | 6.21 | 4.9 | 95.1 | 0.0 | -2.18 | 0.61 | 0.66 | 1.59 | 3.7 | 0.003 | 0.90 | 0.0 | 0.08 | 16.85 | 0.00 | 2.200 | 11.26 | 0.46 | 3.1 | 96.9 | 0.0 | 1.03 | 0.73 | 0.67 | 0.75 | 1.37 | 52028 | 6772 | 16 | 0 | 68 | 0 | 0 | logfile |
✔ | 6J9E | 9785 | 2023-08-18 | 2019-01-22 | 3.41 | 3.55 | 3.48 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 14.31 | 0.01 | 2.198 | 2.44 | 0.05 | 3.0 | 97.0 | 0.0 | -3.74 | 0.76 | 0.79 | 1.49 | 3.5 | 0.004 | 0.62 | 0.0 | 0.04 | 16.64 | 0.00 | 1.998 | 6.84 | 0.54 | 3.7 | 96.3 | 0.0 | 0.16 | 0.63 | 0.80 | 0.84 | 1.55 | 24427 | 3203 | 11 | 63 | 3 | 0 | 0 | logfile |
✔ | 6J99 | 9783 | 2023-08-16 | 2019-01-22 | 4.1 | 4.24 | — | 4.2 | 0.008 | 0.98 | 1.0 | 0.05 | 26.78 | 0.01 | 2.204 | 7.71 | 0.00 | 8.0 | 92.0 | 0.0 | -2.88 | 0.65 | 0.52 | — | 4.1 | 0.004 | 0.77 | 0.0 | 0.04 | 27.36 | 0.01 | 2.114 | 19.04 | 0.00 | 6.3 | 93.7 | 0.0 | -0.75 | 2.23 | 0.78 | 0.78 | — | 15266 | 1164 | 12 | 289 | 0 | 0 | 0 | logfile |
✔ | 6J8J | 9782 | 2023-08-12 | 2019-01-19 | 3.2 | 3.36 | — | 3.3 | 0.010 | 1.51 | 0.0 | 0.16 | 22.07 | 0.01 | 1.829 | 71.00 | 28.80 | 2.5 | 96.2 | 1.3 | 2.79 | 0.59 | 0.76 | 1.66 | 3.4 | 0.004 | 0.79 | 0.0 | 0.06 | 18.17 | 0.00 | 2.139 | 9.51 | 0.47 | 3.9 | 95.9 | 0.2 | 0.53 | 1.44 | 0.60 | 0.83 | 1.73 | 11764 | 1433 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 6J8i | 9782 | 2023-08-12 | 2019-01-19 | 3.2 | 3.36 | — | 3.3 | 0.010 | 1.51 | 0.0 | 0.16 | 22.06 | 0.01 | 1.829 | 71.34 | 28.73 | 2.5 | 96.2 | 1.3 | 2.78 | 0.59 | 0.76 | 1.66 | 3.4 | 0.004 | 0.81 | 0.0 | 0.06 | 18.15 | 0.00 | 2.127 | 9.72 | 0.54 | 4.2 | 95.6 | 0.2 | 0.81 | 0.93 | 0.60 | 0.83 | 1.64 | 11764 | 1433 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 6J8H | 9781 | 2023-08-12 | 2019-01-19 | 3.2 | 3.35 | — | 3.3 | 0.010 | 1.54 | 1.0 | 0.10 | 21.80 | 0.01 | 1.886 | 58.60 | 27.17 | 2.0 | 96.6 | 1.3 | 2.87 | 0.60 | 0.78 | 1.53 | 3.3 | 0.003 | 0.71 | 0.0 | 0.04 | 18.34 | 0.00 | 2.192 | 7.82 | 0.23 | 4.2 | 95.6 | 0.3 | 0.70 | 0.79 | 0.61 | 0.84 | 1.85 | 11763 | 1433 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 6J8G | 9781 | 2023-08-12 | 2019-01-19 | 3.2 | 3.35 | — | 3.3 | 0.010 | 1.54 | 1.0 | 0.10 | 21.81 | 0.01 | 1.886 | 58.56 | 27.17 | 2.0 | 96.6 | 1.3 | 2.85 | 0.60 | 0.78 | 1.54 | 3.3 | 0.004 | 0.74 | 0.0 | 0.04 | 18.34 | 0.00 | 2.169 | 8.03 | 0.70 | 4.1 | 95.6 | 0.3 | 0.60 | 0.80 | 0.61 | 0.84 | 1.79 | 11763 | 1433 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 6J8E | 9780 | 2023-08-12 | 2019-01-18 | 3.0 | 3.18 | — | 3.2 | 0.008 | 1.43 | 4.0 | 0.08 | 13.94 | 0.01 | 1.927 | 13.58 | 5.14 | 6.4 | 92.6 | 1.0 | -5.60 | 0.61 | 0.77 | 3.02 | 3.2 | 0.003 | 0.79 | 0.0 | 0.04 | 16.50 | 0.00 | 2.238 | 7.50 | 2.18 | 4.8 | 94.8 | 0.4 | 0.64 | 0.87 | 0.61 | 0.85 | 2.29 | 10482 | 1277 | 7 | 0 | 10 | 0 | 0 | logfile |
✔ | 6J40 | 9777 | 2023-08-23 | 2019-01-07 | 3.8 | 4.30 | — | 3.8 | 0.022 | 1.99 | 4.0 | 0.18 | 19.03 | 0.01 | 1.376 | 17.72 | 0.33 | 4.5 | 95.5 | 0.0 | -5.08 | 0.80 | 0.72 | 1.93 | 3.8 | 0.003 | 0.74 | 0.0 | 0.04 | 16.50 | 0.00 | 1.533 | 17.03 | 0.24 | 4.1 | 95.9 | 0.0 | -0.09 | 0.70 | 0.84 | 0.77 | 1.57 | 96390 | 8392 | 120 | 0 | 1656 | 0 | 0 | logfile |
✔ | 6J3Z | 9776 | 2023-08-18 | 2019-01-07 | 3.6 | 3.78 | — | 3.6 | 0.019 | 1.82 | 4.0 | 0.15 | 17.99 | 0.01 | 1.392 | 13.61 | 0.28 | 4.3 | 95.7 | 0.0 | -5.08 | 0.80 | 0.81 | 3.43 | 3.6 | 0.004 | 0.71 | 0.0 | 0.04 | 17.15 | 0.00 | 1.596 | 14.19 | 0.59 | 3.4 | 96.6 | 0.0 | -0.05 | 0.75 | 0.80 | 0.82 | 2.53 | 74619 | 6984 | 97 | 0 | 978 | 0 | 0 | logfile |
✔ | 6J3Y | 9775 | 2023-08-16 | 2019-01-07 | 3.3 | 3.49 | — | 3.4 | 0.019 | 1.77 | 4.0 | 0.14 | 17.37 | 0.01 | 1.372 | 10.02 | 0.32 | 4.1 | 95.9 | 0.0 | -5.09 | 0.77 | 0.84 | 3.85 | 3.4 | 0.003 | 0.66 | 0.0 | 0.04 | 16.70 | 0.00 | 2.007 | 12.44 | 0.34 | 3.4 | 96.6 | 0.0 | 0.14 | 0.65 | 0.78 | 0.87 | 2.88 | 70136 | 6984 | 90 | 0 | 428 | 0 | 0 | logfile |
✔ | 6J30 | 9773 | 2023-08-09 | 2019-01-03 | 4.5 | 4.74 | — | 4.6 | 0.002 | 0.44 | 0.0 | 0.04 | 7.35 | 0.00 | 2.093 | 8.60 | 0.07 | 6.4 | 93.4 | 0.3 | -3.38 | 0.86 | 0.72 | — | 4.5 | 0.004 | 0.76 | 0.0 | 0.04 | 12.18 | 0.00 | 1.918 | 21.54 | 0.01 | 5.4 | 94.4 | 0.2 | -0.88 | 1.91 | 0.89 | 0.77 | — | 106227 | 13504 | 47 | 0 | 0 | 0 | 0 | logfile |
✔ | 6J2X | 9772 | 2023-08-09 | 2019-01-03 | 3.8 | 3.99 | — | 3.9 | 0.002 | 0.40 | 0.0 | 0.04 | 7.12 | 0.00 | 2.220 | 6.65 | 0.00 | 5.8 | 94.1 | 0.1 | -3.52 | 0.80 | 0.70 | 0.49 | 3.9 | 0.004 | 0.78 | 1.0 | 0.04 | 15.31 | 0.00 | 2.050 | 18.52 | 0.40 | 4.7 | 95.2 | 0.1 | -0.69 | 1.88 | 0.84 | 0.78 | 0.88 | 106176 | 13501 | 47 | 0 | 0 | 0 | 0 | logfile |
✔ | 6J2Q | 9771 | 2023-08-09 | 2019-01-02 | 3.8 | 3.95 | — | 3.9 | 0.002 | 0.40 | 0.0 | 0.04 | 7.17 | 0.00 | 2.202 | 6.58 | 0.00 | 5.5 | 94.4 | 0.1 | -3.50 | 0.77 | 0.68 | 0.88 | 3.9 | 0.003 | 0.74 | 0.0 | 0.04 | 15.50 | 0.00 | 2.058 | 15.76 | 0.38 | 4.1 | 95.8 | 0.1 | -0.48 | 2.27 | 0.82 | 0.76 | 1.06 | 106311 | 13518 | 47 | 0 | 0 | 0 | 0 | logfile |
✔ | 6J0M | 9764 | 2023-08-12 | 2018-12-24 | 3.9 | 3.79 | — | 3.8 | 0.007 | 0.98 | 0.0 | 0.06 | 15.91 | 0.01 | 2.282 | 6.73 | 0.87 | 5.2 | 94.8 | 0.0 | -4.05 | 0.52 | 0.82 | 1.83 | 3.8 | 0.003 | 0.66 | 0.0 | 0.05 | 17.65 | 0.00 | 2.174 | 12.35 | 0.22 | 5.9 | 94.1 | 0.0 | -1.95 | 1.29 | 0.52 | 0.82 | 1.43 | 12585 | 1605 | 3 | 0 | 0 | 0 | 0 | logfile |