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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6JiY | 9837 | 2024-03-12 | 2019-02-24 | 3.9 | 4.05 | — | 3.9 | 0.008 | 1.06 | 1.0 | 0.05 | 15.54 | 0.01 | 2.203 | 7.76 | 0.47 | 12.2 | 87.5 | 0.2 | -5.76 | 0.73 | 0.78 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115288 | 15056 | 20 | 0 | 32 | 0 | 0 | logfile |
✘ | 6JiU | 9836 | 2024-03-11 | 2019-02-23 | 4.2 | 4.52 | — | 4.2 | 0.006 | 1.01 | 9.0 | 0.05 | 15.69 | 0.01 | 2.218 | 10.69 | 0.51 | 10.3 | 89.5 | 0.2 | -5.44 | 0.78 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112212 | 14684 | 20 | 0 | 24 | 0 | 0 | logfile |
✘ | 6Jii | 9834 | 2024-03-12 | 2019-02-21 | 4.2 | 4.38 | — | 4.1 | 0.008 | 1.12 | 0.0 | 0.06 | 11.51 | 0.01 | 2.208 | 7.63 | 0.57 | 11.2 | 88.4 | 0.4 | -4.07 | 0.78 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115028 | 15012 | 16 | 0 | 16 | 0 | 0 | logfile |
✘ | 6Ji8 | 9833 | 2024-03-12 | 2019-02-20 | 3.6 | 3.80 | — | 3.7 | 0.010 | 1.26 | 8.0 | 0.06 | 11.98 | 0.01 | 2.196 | 8.60 | 1.03 | 10.5 | 89.0 | 0.5 | -4.77 | 0.73 | 0.77 | 2.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115060 | 15024 | 16 | 0 | 4 | 0 | 0 | logfile |
✔ | 6Ji1 | 9832 | 2024-03-16 | 2019-02-19 | 4.1 | 4.20 | — | 4.1 | 0.010 | 1.26 | 0.0 | 0.06 | 11.77 | 0.01 | 2.250 | 7.50 | 0.57 | 11.2 | 83.5 | 5.3 | -4.78 | 0.61 | 0.71 | — | 4.1 | 0.003 | 0.75 | 0.0 | 0.04 | 12.66 | 0.01 | 2.052 | 10.58 | 0.00 | 5.6 | 93.8 | 0.7 | -1.07 | 0.89 | 0.56 | 0.69 | — | 13992 | 1848 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 6Ji0 | 9831 | 2024-03-11 | 2019-02-19 | 4.2 | 4.40 | — | 4.2 | 0.007 | 1.15 | 0.0 | 0.06 | 11.78 | 0.01 | 2.204 | 7.43 | 0.86 | 12.9 | 86.9 | 0.3 | -4.44 | 0.73 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109772 | 14332 | 12 | 0 | 16 | 0 | 0 | logfile |
✘ | 6JHN | 9826 | 2024-03-11 | 2019-02-18 | 4.5 | 7.49 | — | 4.4 | 0.010 | 1.23 | 0.0 | 0.06 | 16.52 | 0.01 | 2.114 | 19.26 | 1.44 | 13.9 | 85.8 | 0.3 | -4.27 | 0.85 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109488 | 14332 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 6JH6 | 9825 | 2024-03-11 | 2019-02-17 | 4.8 | 5.31 | — | 4.8 | 0.006 | 1.07 | 1.0 | 0.05 | 11.44 | 0.01 | 2.197 | 12.11 | 0.58 | 10.8 | 88.9 | 0.3 | -4.03 | 0.79 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 108924 | 14244 | 12 | 0 | 8 | 0 | 0 | logfile |
✘ | 6JGZ | 9824 | 2024-03-11 | 2019-02-16 | 4.6 | 4.96 | — | 4.6 | 0.007 | 1.13 | 0.0 | 0.06 | 11.54 | 0.01 | 2.171 | 11.98 | 0.73 | 11.3 | 88.3 | 0.4 | -4.06 | 0.78 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109824 | 14368 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 6JEo | 9807 | 2024-03-19 | 2019-02-06 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 94576 | 8774 | 88 | 0 | 504 | 0 | 0 | logfile |
✔ | 6JD1 | 9801 | 2024-03-12 | 2019-01-30 | 3.38 | 4.55 | — | 3.9 | 0.013 | 1.00 | 0.0 | 0.05 | 16.01 | 0.00 | 2.005 | 6.39 | 0.00 | 7.3 | 92.7 | 0.0 | -4.95 | 0.85 | 0.70 | 1.18 | 4.0 | 0.005 | 0.66 | 0.0 | 0.04 | 15.93 | 0.00 | 1.753 | 18.27 | 1.77 | 8.7 | 91.3 | 0.0 | -2.57 | 1.32 | 0.89 | 0.85 | 1.80 | 63427 | 3953 | 36 | 0 | 60 | 192 | 31469 | logfile |
✔ | 6JCZ | 9800 | 2024-03-12 | 2019-01-30 | 3.35 | 4.22 | — | 3.7 | 0.006 | 0.81 | 0.0 | 0.04 | 15.49 | 0.00 | 1.670 | 3.80 | 0.00 | 6.8 | 93.2 | 0.0 | -5.41 | 0.85 | 0.74 | 2.43 | 3.8 | 0.004 | 0.65 | 0.0 | 0.04 | 16.78 | 0.00 | 1.817 | 10.70 | 2.39 | 6.3 | 93.7 | 0.0 | -2.66 | 3.27 | 0.86 | 0.84 | 2.63 | 63476 | 3959 | 36 | 0 | 48 | 99 | 31525 | logfile |
✔ | 6JCW | 9799 | 2024-03-21 | 2019-01-30 | 3.04 | 3.78 | — | 3.4 | 0.007 | 0.88 | 0.0 | 0.05 | 15.38 | 0.01 | 2.168 | 1.88 | 0.35 | 6.1 | 93.9 | 0.0 | -6.55 | 0.88 | 0.88 | 4.46 | 3.5 | 0.006 | 0.70 | 0.0 | 0.05 | 16.35 | 0.00 | 2.194 | 4.92 | 0.50 | 3.6 | 96.4 | 0.0 | -0.24 | 1.30 | 0.86 | 0.90 | 3.90 | 30888 | 3912 | 36 | 0 | 24 | 100 | 0 | logfile |
✔ | 6JCV | 9798 | 2024-03-21 | 2019-01-30 | 2.92 | 4.05 | — | 3.7 | 0.007 | 0.90 | 0.0 | 0.06 | 13.94 | 0.01 | 2.341 | 5.00 | 0.00 | 5.2 | 94.8 | 0.0 | -5.68 | 0.87 | 0.86 | 3.38 | 3.7 | 0.004 | 0.82 | 0.0 | 0.05 | 15.40 | 0.00 | 2.275 | 10.56 | 1.79 | 4.2 | 95.8 | 0.0 | -0.27 | 0.70 | 0.87 | 0.88 | 2.24 | 30876 | 3912 | 31 | 0 | 24 | 96 | 0 | logfile |
✔ | 6JC3 | 9793 | 2024-03-11 | 2019-01-28 | 4.8 | 4.87 | — | 4.8 | 0.010 | 1.35 | 2.0 | 0.07 | 16.29 | 0.01 | 1.512 | 30.30 | 3.10 | 10.1 | 89.1 | 0.8 | -4.39 | 0.42 | 0.78 | — | 4.7 | 0.002 | 0.66 | 0.0 | 0.04 | 14.49 | 0.00 | 2.142 | 11.86 | 0.00 | 5.4 | 94.6 | 0.0 | 1.32 | 4.20 | 0.43 | 0.81 | — | 3154 | 391 | 2 | 6 | 0 | 0 | 0 | logfile |
✔ | 6JBQ | 9792 | 2024-03-20 | 2019-01-26 | 4.02 | 4.10 | 3.96 | 4.1 | 0.003 | 0.70 | 0.0 | 0.05 | 16.54 | 0.01 | 2.197 | 4.02 | 0.39 | 3.9 | 96.1 | 0.0 | -4.13 | 0.77 | 0.79 | — | 4.0 | 0.003 | 0.62 | 0.0 | 0.04 | 16.83 | 0.00 | 2.085 | 8.82 | 0.04 | 4.3 | 95.7 | 0.0 | -0.52 | 1.60 | 0.80 | 0.82 | — | 28163 | 3347 | 10 | 101 | 3 | 0 | 0 | logfile |
✔ | 6JBJ | 9791 | 2024-03-14 | 2019-01-25 | 3.6 | 3.75 | — | 3.7 | 0.008 | 1.04 | 0.0 | 0.06 | 16.77 | 0.01 | 2.206 | 10.64 | 0.00 | 9.1 | 90.9 | 0.0 | -6.19 | 0.65 | 0.83 | 2.03 | 3.7 | 0.003 | 0.71 | 0.0 | 0.04 | 18.18 | 0.00 | 2.091 | 17.04 | 3.66 | 7.7 | 92.3 | 0.0 | -1.66 | 1.17 | 0.64 | 0.82 | 1.21 | 9166 | 1130 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6JBH | 9790 | 2024-03-11 | 2019-01-25 | 3.94 | 4.06 | — | 4.0 | 0.007 | 1.23 | 0.0 | 0.07 | 12.50 | 0.03 | 2.260 | 6.09 | 0.53 | 14.3 | 85.5 | 0.2 | -5.84 | 0.68 | 0.81 | 2.48 | 4.0 | 0.003 | 0.93 | 0.0 | 0.05 | 16.18 | 0.00 | 2.205 | 14.02 | 3.94 | 14.6 | 85.4 | 0.0 | -2.29 | 0.93 | 0.69 | 0.81 | 1.53 | 8592 | 1062 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6JB1 | 9787 | 2024-03-25 | 2019-01-25 | 3.3 | 3.82 | — | 3.7 | 0.008 | 1.06 | 0.0 | 0.58 | 23.68 | 0.00 | 2.257 | 10.49 | 6.21 | 4.9 | 95.1 | 0.0 | -2.18 | 0.61 | 0.66 | 1.59 | 3.7 | 0.003 | 0.89 | 0.0 | 0.08 | 19.30 | 0.00 | 2.182 | 11.15 | 3.46 | 2.9 | 97.1 | 0.0 | 1.20 | 0.67 | 0.67 | 0.75 | 1.25 | 52028 | 6772 | 16 | 0 | 68 | 0 | 0 | logfile |
✔ | 6J9E | 9785 | 2024-03-19 | 2019-01-22 | 3.41 | 3.55 | 3.48 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 14.74 | 0.01 | 2.198 | 2.44 | 0.05 | 3.0 | 97.0 | 0.0 | -3.74 | 0.76 | 0.79 | 1.49 | 3.5 | 0.007 | 0.74 | 0.0 | 0.05 | 16.97 | 0.00 | 1.946 | 7.48 | 3.25 | 4.8 | 95.2 | 0.0 | -0.18 | 0.62 | 0.81 | 0.85 | 1.74 | 24427 | 3203 | 11 | 63 | 3 | 0 | 0 | logfile |