Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6Q16	20556	2023-07-07	2019-08-02	4.1	4.11	—	4.1	0.007	1.05	0.0	0.06	14.24	0.01	2.214	3.99	0.67	3.6	96.4	0.0	-5.13	0.85	0.83	—	4.1	0.003	0.69	0.0	0.04	13.91	0.00	2.101	9.20	0.01	3.7	96.3	0.0	-0.13	0.76	0.86	0.84	—	118198	14787	93	0	0	0	0	logfile
✔	6ET5	3951	2023-07-15	2017-10-25	2.87	4.09	3.11	3.5	0.025	2.86	202.0	0.21	21.56	0.03	1.592	33.46	8.13	12.2	83.7	4.1	-5.05	0.80	0.85	3.34	3.5	0.004	1.00	0.0	0.04	18.75	0.00	2.042	14.51	1.88	8.8	90.8	0.4	-0.16	1.31	0.79	0.85	3.04	31994	3492	92	0	75	0	0	logfile
✔	7JJJ	22354	2023-07-04	2020-07-26	4.5	4.63	4.47	4.5	0.020	1.79	0.0	0.13	10.01	0.01	2.377	0.90	0.07	2.0	98.0	0.0	0.68	0.79	0.80	—	4.5	0.004	0.71	0.0	0.05	12.38	0.00	2.113	11.30	0.00	4.0	96.0	0.0	-0.22	1.44	0.80	0.83	—	54614	6674	92	0	182	0	0	logfile
✘	7WG5	32477	2023-07-05	2021-12-28	3.89	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	112687	11759	92	0	545	0	0	logfile
✔	6AZ3	7025	2023-07-10	2017-09-09	2.5	3.08	—	3.1	0.012	1.29	0.0	0.06	16.54	0.03	1.349	4.53	0.96	6.4	93.4	0.2	-4.53	0.54	0.78	5.15	3.1	0.006	0.88	0.0	0.04	17.29	0.01	1.945	8.72	3.08	6.3	93.6	0.1	-1.41	0.34	0.54	0.80	3.89	126561	6390	91	3507	44	1019	0	logfile
✘	7DCo	30637	2023-07-11	2020-10-26	2.5	2.59	—	2.6	0.010	1.11	8.0	0.08	13.06	0.01	2.079	5.90	1.87	4.4	95.1	0.5	-3.91	0.53	0.65	3.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	129875	15294	91	556	24	1714	0	logfile
✘	5XNM	6742	2023-07-16	2017-05-23	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	92842	8712	90	0	486	0	0	logfile
✔	7JU4	22481	2023-07-12	2020-08-19	3.4	3.50	—	3.7	0.004	0.70	3.0	0.05	15.00	0.00	1.923	14.97	0.04	5.8	94.2	0.0	-0.77	0.58	0.71	1.64	3.7	0.003	0.65	0.0	0.04	16.56	0.00	1.890	12.89	0.33	4.4	95.6	0.0	0.07	0.41	0.60	0.78	1.22	133504	16960	90	14	101	0	0	logfile
✔	6J3Y	9775	2023-07-10	2019-01-07	3.3	3.49	—	3.4	0.019	1.77	4.0	0.14	17.37	0.01	1.372	10.02	0.32	4.1	95.9	0.0	-5.09	0.77	0.84	3.85	3.4	0.003	0.66	0.0	0.04	16.70	0.00	2.007	12.44	0.34	3.4	96.6	0.0	0.14	0.65	0.78	0.87	2.88	70136	6984	90	0	428	0	0	logfile
✘	6JEo	9807	2023-07-16	2019-02-06	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	94576	8774	88	0	504	0	0	logfile
✔	7UNU	26633	2023-07-25	2022-04-11	2.9	3.16	2.89	3.1	0.007	0.70	0.0	0.04	14.92	0.02	1.895	6.14	0.20	8.0	91.6	0.4	-1.70	0.81	0.89	3.42	3.1	0.002	0.67	0.0	0.04	15.85	0.01	1.936	7.18	3.16	6.7	92.9	0.4	-1.00	2.56	0.79	0.89	2.72	149259	6488	86	4606	609	201	0	logfile
✔	8AXK	15700	2023-07-19	2022-08-31	4.05	4.12	3.79	4.1	0.002	0.46	0.0	0.04	10.52	0.00	2.167	6.25	3.27	5.0	95.0	0.0	3.62	0.41	0.83	—	4.1	0.003	0.70	0.0	0.04	13.37	0.00	2.049	10.66	0.06	5.4	94.6	0.0	2.73	2.12	0.41	0.83	—	44141	5608	85	0	0	0	0	logfile
✔	7UNV	26634	2023-07-25	2022-04-11	2.7	3.21	2.68	3.0	0.005	0.62	0.0	0.04	15.01	0.02	1.751	6.95	0.16	6.6	93.0	0.4	-1.44	0.90	0.89	3.23	3.0	0.004	0.71	0.0	0.04	15.77	0.01	1.764	8.46	2.74	7.0	92.7	0.3	-0.81	0.37	0.88	0.93	2.85	149599	6534	85	4605	598	295	0	logfile
✔	7V7H	31771	2023-07-20	2021-08-21	3.2	4.02	—	3.7	0.004	0.62	0.0	0.05	13.51	0.00	2.162	7.22	0.00	4.2	95.7	0.1	-0.31	0.85	0.85	1.93	3.7	0.004	0.60	0.0	0.05	14.99	0.00	2.178	7.99	0.17	5.5	94.4	0.0	-0.33	0.31	0.85	0.85	1.87	50949	6209	84	0	174	0	0	logfile
✔	7V7i	31772	2023-07-20	2021-08-21	3.3	4.09	—	3.8	0.005	0.67	0.0	0.05	13.60	0.00	2.128	8.29	0.00	5.4	94.5	0.2	-0.23	0.86	0.85	2.37	3.8	0.008	0.73	0.0	0.05	15.05	0.00	2.069	8.83	0.29	6.9	92.9	0.1	-0.48	0.31	0.87	0.88	2.10	51072	6228	84	0	174	0	0	logfile
✘	6TRD	10559	2023-07-12	2019-12-18	3.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	74991	6849	84	0	402	51	0	logfile
✔	7V7J	31773	2023-07-20	2021-08-21	3.4	4.17	—	3.8	0.005	0.64	0.0	0.05	13.61	0.00	2.144	9.62	0.00	6.1	93.8	0.1	-0.39	0.86	0.85	2.06	3.8	0.002	0.55	0.0	0.04	15.04	0.00	2.163	8.08	0.15	5.1	94.8	0.1	-0.26	0.30	0.87	0.87	1.78	51072	6228	84	0	174	0	0	logfile
✔	6QC3	4495	2023-07-17	2018-12-26	4.2	4.28	4.21	4.2	0.010	1.32	1.0	0.85	12.09	0.01	1.873	8.18	0.75	11.7	88.1	0.1	-3.94	0.67	0.75	—	4.2	0.008	1.49	0.0	0.26	13.53	0.01	1.159	18.23	0.10	10.5	89.5	0.0	-1.30	1.75	0.69	0.78	—	96897	12010	84	0	77	0	0	logfile
✔	6QC2	4494	2023-07-17	2018-12-26	4.2	4.29	4.30	4.2	0.009	1.24	1.0	0.85	11.81	0.01	1.942	7.58	0.57	11.4	88.5	0.1	-3.91	0.69	0.76	—	4.2	0.007	1.47	0.0	0.26	13.50	0.01	1.452	17.01	0.04	9.5	90.4	0.0	-1.17	0.98	0.70	0.78	—	96938	12000	83	0	93	0	0	logfile
✔	8DVD	27735	2023-07-10	2022-07-28	4.12	4.71	4.34	4.3	0.007	1.07	0.0	0.07	14.38	0.00	1.932	5.05	0.69	8.0	91.9	0.1	-0.76	0.79	0.74	—	4.3	0.003	0.79	0.0	0.04	13.99	0.00	2.186	11.53	0.00	8.2	91.7	0.1	-0.98	1.74	0.83	0.80	—	20804	2137	83	0	302	0	0	logfile

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