Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NPS	12518	2023-02-22	2021-02-28	3.81	3.93	3.82	3.9	0.010	1.15	6.0	0.08	11.02	0.01	2.182	1.23	0.00	2.5	97.5	0.0	-1.44	0.82	0.82	2.59	3.9	0.002	0.59	0.0	0.05	12.84	0.00	1.895	2.89	0.00	1.8	98.2	0.0	-0.02	0.68	0.83	0.83	2.26	55350	3732	9	0	0	0	27681	logfile
✔	8CY6	27068	2023-02-22	2022-05-23	3.2	3.98	3.39	3.6	0.003	0.50	0.0	0.04	10.43	0.00	2.024	7.15	0.16	3.0	96.8	0.2	0.26	0.82	0.78	2.02	3.6	0.004	0.51	0.0	0.04	11.67	0.00	2.016	7.45	0.10	4.5	95.5	0.0	-0.15	0.39	0.83	0.80	2.07	56077	3666	6	0	0	0	27658	logfile
✔	7RFH	24442	2023-02-22	2021-07-14	3.7	3.44	—	3.5	0.013	1.86	36.0	0.10	14.46	0.01	2.192	5.28	2.73	8.7	90.2	1.1	-3.02	0.54	0.77	3.18	3.5	0.003	0.61	0.0	0.04	15.42	0.00	1.980	8.89	0.59	5.5	94.1	0.5	-0.85	0.76	0.49	0.76	2.30	55141	3595	16	0	16	0	27603	logfile
✔	6SGS	10183	2023-02-21	2019-08-05	3.2	3.29	3.18	3.3	0.004	0.64	0.0	0.04	13.19	0.00	2.011	5.87	0.14	2.8	97.2	0.0	-3.26	0.57	0.69	0.97	3.3	0.005	0.62	0.0	0.04	15.68	0.00	1.989	7.26	0.45	2.8	97.2	0.0	0.98	1.37	0.64	0.84	2.36	54156	3528	8	0	0	0	27338	logfile
✔	6SGR	10182	2023-02-21	2019-08-05	3.17	3.28	3.08	3.2	0.004	0.54	0.0	0.04	13.56	0.00	2.201	5.15	0.00	3.2	96.8	0.0	-3.06	0.69	0.83	3.52	3.2	0.004	0.57	0.0	0.04	15.44	0.00	2.003	5.76	0.10	3.2	96.8	0.0	1.08	0.77	0.66	0.84	2.89	54142	3528	8	0	0	0	27330	logfile
✔	7UX2	26846	2023-02-21	2022-05-04	2.9	3.04	—	3.0	0.003	0.64	0.0	0.04	14.24	0.00	1.999	4.45	0.00	5.1	94.9	0.0	0.24	0.74	0.78	3.35	3.0	0.003	0.56	0.0	0.04	16.42	0.00	1.862	7.84	0.73	4.8	95.2	0.0	0.30	0.48	0.74	0.82	3.07	54396	3421	20	2	4	0	27147	logfile
✔	6WRF	21882	2023-02-21	2020-04-29	3.14	3.69	—	3.5	0.011	0.86	0.0	0.05	13.25	0.01	1.975	3.32	0.07	1.0	99.0	0.0	-0.92	0.77	0.73	3.20	3.5	0.003	0.51	0.0	0.04	14.87	0.00	1.797	6.32	0.03	3.9	96.1	0.0	0.93	0.60	0.74	0.80	2.64	53851	3450	27	0	11	7	27016	logfile
✘	6PoD	20412	2023-02-21	2019-07-03	4.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	53637	3427	20	0	25	0	26898	logfile
✔	6PoS	20418	2023-02-21	2019-07-05	4.12	4.39	—	4.2	0.003	0.68	0.0	0.04	11.58	0.01	2.116	2.48	0.00	0.1	99.9	0.0	-2.43	0.80	0.77	—	4.2	0.002	0.55	0.0	0.04	13.00	0.00	1.937	10.02	0.03	3.3	96.7	0.0	-0.01	1.03	0.82	0.80	—	53503	3425	20	0	13	0	26853	logfile
✔	7QTQ	14145	2023-02-22	2022-01-15	3.3	3.53	—	3.4	0.008	0.83	4.0	0.06	15.08	0.01	2.045	9.55	0.20	10.6	89.4	0.0	-2.27	0.72	0.82	2.74	3.4	0.003	0.57	2.0	0.04	15.81	0.01	1.931	9.05	0.10	7.8	92.2	0.0	-1.01	0.42	0.72	0.84	2.33	54954	3577	8	0	24	0	26821	logfile
✔	6ZXN	11526	2023-02-22	2020-07-30	2.93	3.41	—	3.3	0.003	0.51	0.0	0.04	12.58	0.00	1.940	7.08	0.10	4.5	95.5	0.0	-0.46	0.54	0.73	2.84	3.3	0.004	0.54	0.0	0.04	14.40	0.00	1.904	8.80	0.81	4.9	95.1	0.0	-0.37	1.11	0.51	0.72	2.85	55098	3522	21	0	63	0	26763	logfile
✔	6Po3	20408	2023-02-21	2019-07-03	4.28	4.38	—	4.3	0.003	0.65	0.0	0.04	11.03	0.00	2.179	2.53	0.00	0.4	99.6	0.0	-1.68	0.75	0.75	—	4.3	0.003	0.55	0.0	0.04	13.05	0.00	1.942	9.70	0.04	3.5	96.5	0.0	0.04	2.55	0.79	0.79	—	53225	3406	20	0	12	0	26724	logfile
✘	6Po1	20406	2023-02-21	2019-07-03	4.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	53244	3407	20	0	18	0	26717	logfile
✔	8E4L	27891	2023-02-22	2022-08-18	3.32	3.76	3.33	3.6	0.004	0.91	0.0	0.04	11.26	0.01	1.974	5.85	0.00	2.2	97.8	0.0	2.40	0.68	0.75	1.96	3.6	0.002	0.67	0.0	0.04	13.81	0.00	2.153	6.69	0.04	3.4	96.6	0.0	2.26	0.86	0.68	0.76	1.73	54556	3592	8	0	16	0	26580	logfile
✔	8CY7	27069	2023-02-22	2022-05-23	2.9	3.84	3.06	3.3	0.002	0.71	10.0	0.17	12.19	0.00	2.018	5.28	0.26	3.7	96.1	0.1	0.96	0.83	0.76	2.16	3.3	0.004	0.77	10.0	0.17	13.12	0.00	1.975	8.03	0.76	5.0	94.9	0.1	0.49	1.21	0.84	0.80	2.40	54932	3513	21	0	74	0	26549	logfile
✔	8E4o	27894	2023-02-21	2022-08-18	3.43	3.87	3.39	3.6	0.002	0.44	0.0	0.03	11.67	0.01	2.257	5.45	0.45	1.8	98.2	0.0	2.99	0.68	0.73	2.38	3.7	0.003	0.66	0.0	0.03	13.35	0.00	2.024	6.81	0.19	3.0	97.0	0.0	2.90	0.72	0.72	0.80	1.84	53496	3588	8	0	4	0	26024	logfile
✔	8CYB	27073	2023-02-21	2022-05-23	2.7	3.56	2.88	3.2	0.002	0.44	1.0	0.04	13.74	0.00	1.966	7.28	0.20	5.0	94.7	0.3	-0.12	0.80	0.77	1.69	3.2	0.003	0.50	1.0	0.04	14.54	0.00	1.954	8.58	0.64	5.3	94.4	0.3	-0.38	0.38	0.80	0.78	2.08	54126	3432	29	0	114	0	25897	logfile
✔	8E4Q	27896	2023-02-21	2022-08-18	3.51	3.90	3.48	3.7	0.004	0.62	0.0	0.04	13.32	0.02	1.966	7.31	0.15	3.5	96.5	0.0	1.23	0.68	0.78	1.65	3.7	0.003	0.67	0.0	0.04	14.33	0.00	2.064	4.76	0.26	3.4	96.6	0.0	2.13	0.70	0.70	0.79	1.64	53136	3576	8	0	4	0	25664	logfile
✔	8E4N	27893	2023-02-21	2022-08-18	3.07	3.58	3.04	3.3	0.003	0.47	0.0	0.04	11.07	0.01	2.123	8.01	0.00	1.8	98.2	0.0	3.01	0.70	0.79	2.72	3.3	0.003	0.68	0.0	0.03	13.61	0.00	2.129	8.20	0.46	3.0	97.0	0.1	2.62	0.69	0.70	0.79	2.64	52736	3604	8	0	4	0	25460	logfile
✔	7KKK	22907	2023-02-21	2020-10-27	3.03	3.38	3.82	3.3	0.020	1.73	3.0	0.12	10.39	0.01	2.364	0.75	0.21	1.8	98.2	0.0	0.60	0.63	0.82	3.30	3.3	0.003	0.57	0.0	0.04	14.22	0.00	1.858	5.15	0.21	2.2	97.8	0.0	0.43	1.49	0.62	0.84	3.21	52320	3360	21	0	54	0	25449	logfile

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