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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8E44 | 27879 | 2023-08-13 | 2022-08-17 | 2.53 | 3.06 | 2.75 | 2.9 | 0.005 | 0.41 | 0.0 | 0.04 | 12.36 | 0.02 | 1.946 | 2.19 | 0.11 | 4.6 | 95.4 | 0.0 | 0.86 | 0.73 | 0.91 | 4.75 | 2.9 | 0.007 | 0.63 | 0.0 | 0.05 | 13.74 | 0.01 | 1.918 | 3.70 | 0.96 | 5.2 | 94.7 | 0.1 | -0.15 | 0.87 | 0.73 | 0.92 | 5.15 | 115856 | 1179 | 11 | 3016 | 1 | 0 | 41883 | logfile |
✔ | 8E43 | 27878 | 2023-08-13 | 2022-08-17 | 2.09 | 2.88 | 2.49 | 2.6 | 0.006 | 0.57 | 0.0 | 0.03 | 12.64 | 0.02 | 1.945 | 2.00 | 1.06 | 4.9 | 94.8 | 0.3 | -2.82 | 0.73 | 0.90 | 5.55 | 2.6 | 0.005 | 0.59 | 0.0 | 0.04 | 13.79 | 0.01 | 1.920 | 3.53 | 1.17 | 5.8 | 93.7 | 0.4 | -0.22 | 0.38 | 0.72 | 0.91 | 5.20 | 115905 | 1179 | 11 | 3015 | 1 | 0 | 41874 | logfile |
✔ | 8E35 | 27857 | 2023-08-13 | 2022-08-16 | 2.27 | 2.92 | 2.48 | 2.8 | 0.009 | 0.45 | 0.0 | 0.03 | 12.21 | 0.02 | 2.028 | 1.04 | 0.00 | 4.6 | 95.4 | 0.0 | 0.37 | 0.75 | 0.86 | 3.34 | 2.7 | 0.004 | 0.60 | 0.0 | 0.04 | 13.40 | 0.01 | 1.960 | 1.76 | 0.53 | 5.6 | 94.4 | 0.0 | -0.52 | 0.64 | 0.71 | 0.89 | 5.15 | 115840 | 1179 | 11 | 3016 | 1 | 1 | 41853 | logfile |
✔ | 8E32 | 27854 | 2023-08-13 | 2022-08-16 | 2.35 | 2.96 | 2.64 | 2.8 | 0.006 | 0.51 | 0.0 | 0.03 | 12.53 | 0.02 | 2.005 | 1.20 | 0.74 | 4.6 | 95.4 | 0.0 | 0.03 | 0.74 | 0.91 | 5.35 | 2.8 | 0.005 | 0.63 | 0.0 | 0.04 | 13.70 | 0.01 | 1.945 | 1.79 | 1.38 | 5.5 | 94.5 | 0.0 | -0.67 | 0.25 | 0.70 | 0.90 | 5.44 | 115899 | 1179 | 11 | 3016 | 2 | 1 | 41852 | logfile |
✔ | 8E41 | 27876 | 2023-08-13 | 2022-08-17 | 2.13 | 2.86 | 2.57 | 2.6 | 0.005 | 0.38 | 1.0 | 0.02 | 12.72 | 0.02 | 1.983 | 1.89 | 0.85 | 5.2 | 94.8 | 0.0 | 0.82 | 0.73 | 0.90 | 5.26 | 2.6 | 0.005 | 0.58 | 1.0 | 0.04 | 13.77 | 0.01 | 1.985 | 3.39 | 1.17 | 5.5 | 94.4 | 0.1 | 0.23 | 0.24 | 0.73 | 0.91 | 5.26 | 115744 | 1186 | 12 | 3016 | 1 | 0 | 41833 | logfile |
✔ | 8E45 | 27880 | 2023-08-13 | 2022-08-17 | 2.3 | 2.93 | 2.71 | 2.8 | 0.005 | 0.39 | 0.0 | 0.03 | 12.39 | 0.02 | 1.957 | 1.35 | 0.74 | 4.5 | 95.4 | 0.2 | 0.33 | 0.71 | 0.90 | 5.24 | 2.8 | 0.005 | 0.62 | 0.0 | 0.04 | 13.83 | 0.01 | 1.895 | 2.05 | 1.38 | 5.8 | 93.9 | 0.3 | -0.43 | 0.59 | 0.69 | 0.90 | 5.62 | 115749 | 1179 | 11 | 3015 | 1 | 0 | 41831 | logfile |
✔ | 8E33 | 27855 | 2023-08-13 | 2022-08-16 | 2.23 | 2.91 | 2.58 | 2.7 | 0.006 | 0.50 | 0.0 | 0.04 | 12.84 | 0.02 | 1.965 | 2.00 | 0.53 | 4.6 | 95.4 | 0.0 | 0.48 | 0.70 | 0.90 | 5.42 | 2.7 | 0.004 | 0.58 | 0.0 | 0.03 | 13.61 | 0.01 | 1.956 | 3.48 | 1.17 | 6.0 | 94.0 | 0.0 | 0.12 | 0.21 | 0.69 | 0.89 | 5.42 | 115769 | 1179 | 11 | 3015 | 1 | 1 | 41830 | logfile |
✔ | 8E30 | 27852 | 2023-08-13 | 2022-08-16 | 1.91 | 2.70 | 2.42 | 2.5 | 0.006 | 0.58 | 0.0 | 0.04 | 13.04 | 0.02 | 1.967 | 2.02 | 0.64 | 5.3 | 94.5 | 0.2 | 0.82 | 0.74 | 0.91 | 5.44 | 2.5 | 0.004 | 0.64 | 0.0 | 0.05 | 13.74 | 0.01 | 1.988 | 3.63 | 1.06 | 5.8 | 94.0 | 0.3 | 0.30 | 1.19 | 0.73 | 0.91 | 5.81 | 115737 | 1179 | 11 | 3016 | 1 | 0 | 41820 | logfile |
✔ | 8E3M | 27868 | 2023-08-13 | 2022-08-17 | 2.25 | 2.92 | 2.58 | 2.7 | 0.005 | 0.42 | 0.0 | 0.07 | 13.03 | 0.02 | 1.973 | 2.01 | 1.27 | 4.0 | 96.0 | 0.0 | 0.83 | 0.71 | 0.91 | 5.18 | 2.7 | 0.004 | 0.61 | 0.0 | 0.04 | 14.11 | 0.01 | 1.960 | 3.50 | 1.49 | 5.2 | 94.7 | 0.2 | 0.15 | 0.25 | 0.69 | 0.90 | 5.49 | 115715 | 1179 | 11 | 3016 | 1 | 0 | 41815 | logfile |
✔ | 8E42 | 27877 | 2023-08-13 | 2022-08-17 | 2.29 | 2.95 | 2.61 | 2.7 | 0.005 | 0.38 | 0.0 | 0.07 | 12.94 | 0.02 | 1.931 | 1.94 | 0.53 | 4.0 | 96.0 | 0.0 | 0.92 | 0.73 | 0.91 | 4.67 | 2.7 | 0.005 | 0.61 | 0.0 | 0.04 | 14.07 | 0.01 | 1.770 | 3.67 | 0.53 | 5.3 | 94.7 | 0.0 | 0.08 | 0.29 | 0.71 | 0.91 | 5.08 | 115718 | 1179 | 11 | 3016 | 2 | 0 | 41815 | logfile |
✔ | 8E36 | 27858 | 2023-08-13 | 2022-08-16 | 2.38 | 3.00 | 2.65 | 2.8 | 0.006 | 0.57 | 0.0 | 0.02 | 13.01 | 0.02 | 1.934 | 2.28 | 0.32 | 4.2 | 95.8 | 0.0 | 1.12 | 0.72 | 0.90 | 4.41 | 2.8 | 0.006 | 0.60 | 0.0 | 0.04 | 14.06 | 0.01 | 1.910 | 4.04 | 0.85 | 5.1 | 94.8 | 0.1 | 0.08 | 0.87 | 0.70 | 0.89 | 4.95 | 115712 | 1179 | 11 | 3015 | 1 | 0 | 41809 | logfile |
✔ | 8E3o | 27869 | 2023-08-13 | 2022-08-17 | 1.99 | 2.75 | 2.52 | 2.6 | 0.006 | 0.42 | 0.0 | 0.05 | 12.65 | 0.02 | 1.955 | 2.37 | 0.74 | 4.6 | 95.1 | 0.3 | -2.75 | 0.70 | 0.88 | 5.93 | 2.5 | 0.005 | 0.61 | 0.0 | 0.04 | 13.84 | 0.01 | 1.944 | 4.19 | 1.49 | 5.5 | 94.3 | 0.2 | 0.06 | 1.00 | 0.69 | 0.88 | 5.88 | 115702 | 1179 | 11 | 3015 | 2 | 0 | 41809 | logfile |
✔ | 8E46 | 27881 | 2023-08-13 | 2022-08-17 | 2.32 | 2.94 | 2.69 | 2.8 | 0.006 | 0.41 | 0.0 | 0.08 | 12.41 | 0.02 | 2.015 | 1.38 | 0.53 | 5.1 | 94.8 | 0.1 | -0.35 | 0.70 | 0.90 | 5.69 | 2.8 | 0.005 | 0.65 | 0.0 | 0.04 | 13.80 | 0.01 | 1.913 | 2.00 | 1.27 | 5.9 | 93.8 | 0.3 | -0.56 | 0.79 | 0.69 | 0.90 | 5.87 | 115754 | 1179 | 11 | 3015 | 1 | 0 | 41809 | logfile |
✔ | 5JZW | 8188 | 2023-08-20 | 2016-05-17 | 4.46 | 4.55 | — | 4.5 | 0.015 | 1.85 | 0.0 | 0.09 | 10.60 | 0.02 | 1.421 | 10.14 | 0.00 | 10.6 | 83.4 | 5.9 | -2.90 | 0.71 | 0.72 | — | 4.5 | 0.005 | 0.76 | 0.0 | 0.04 | 13.23 | 0.01 | 1.953 | 17.63 | 0.02 | 12.6 | 86.7 | 0.7 | -2.24 | 1.26 | 0.75 | 0.79 | — | 83419 | 5474 | 14 | 0 | 0 | 0 | 40509 | logfile |
✔ | 5oDV | 3785 | 2023-08-20 | 2017-07-06 | 4.0 | 4.43 | 4.14 | 4.4 | 0.008 | 0.80 | 0.0 | 0.05 | 10.27 | 0.01 | 1.941 | 6.34 | 0.00 | 13.2 | 86.8 | 0.0 | -4.48 | 0.50 | 0.73 | — | 4.4 | 0.003 | 0.61 | 0.0 | 0.04 | 16.12 | 0.00 | 1.979 | 7.84 | 0.32 | 5.5 | 94.5 | 0.0 | -1.95 | 1.13 | 0.53 | 0.81 | — | 82656 | 4968 | 48 | 120 | 0 | 0 | 40368 | logfile |
✔ | 8FWD | 29502 | 2023-08-20 | 2023-01-20 | 3.67 | 4.15 | 3.98 | 4.1 | 0.003 | 0.52 | 0.0 | 0.03 | 12.69 | 0.00 | 2.375 | 1.50 | 0.05 | 0.8 | 99.2 | 0.0 | 1.38 | 0.75 | 0.78 | 1.41 | 4.1 | 0.004 | 0.54 | 0.0 | 0.03 | 15.35 | 0.00 | 2.122 | 6.56 | 0.41 | 2.1 | 97.9 | 0.0 | 3.07 | 0.78 | 0.74 | 0.78 | 1.61 | 83280 | 5736 | 48 | 0 | 0 | 0 | 40200 | logfile |
✔ | 5L4K | 4002 | 2023-08-19 | 2016-05-25 | 3.9 | 4.00 | — | 4.2 | 0.007 | 0.85 | 3.0 | 0.05 | 16.12 | 0.01 | 1.808 | 5.03 | 3.82 | 11.8 | 85.0 | 3.2 | -6.15 | 0.34 | 0.64 | 0.39 | 4.0 | 0.004 | 0.79 | 0.0 | 0.04 | 17.43 | 0.01 | 1.906 | 18.52 | 0.60 | 9.2 | 90.4 | 0.5 | -1.87 | 1.81 | 0.37 | 0.70 | 0.35 | 79649 | 5000 | 12 | 0 | 0 | 0 | 39990 | logfile |
✔ | 6TE0 | 10473 | 2023-08-19 | 2019-11-10 | 3.92 | 3.97 | 3.90 | 3.8 | 0.007 | 0.81 | 0.0 | 0.05 | 11.47 | 0.01 | 1.432 | 3.80 | 0.00 | 4.0 | 95.9 | 0.0 | -3.76 | 0.80 | 0.81 | 2.25 | 3.8 | 0.003 | 0.59 | 0.0 | 0.04 | 14.19 | 0.00 | 1.737 | 11.29 | 0.10 | 4.9 | 95.1 | 0.0 | -0.65 | 0.87 | 0.80 | 0.82 | 1.98 | 79188 | 5136 | 29 | 0 | 11 | 0 | 39835 | logfile |
✔ | 8B0G | 15780 | 2023-08-19 | 2022-09-07 | 3.3 | 3.50 | 3.22 | 3.1 | 0.009 | 0.80 | 0.0 | 0.07 | 14.55 | 0.01 | 1.687 | 5.69 | 0.34 | 5.2 | 94.8 | 0.0 | -0.94 | 0.84 | 0.81 | 2.69 | 3.1 | 0.006 | 0.64 | 0.0 | 0.05 | 14.55 | 0.00 | 1.916 | 7.41 | 0.20 | 5.5 | 94.5 | 0.0 | -0.45 | 0.86 | 0.86 | 0.86 | 2.61 | 79270 | 5113 | 15 | 0 | 10 | 0 | 38789 | logfile |
✔ | 7UiZ | 26558 | 2023-08-19 | 2022-03-29 | 3.24 | 3.45 | — | 3.4 | 0.004 | 0.75 | 0.0 | 0.05 | 13.43 | 0.00 | 2.014 | 2.79 | 0.00 | 0.1 | 99.9 | 0.0 | -1.03 | 0.60 | 0.81 | 2.98 | 3.4 | 0.003 | 0.58 | 0.0 | 0.04 | 16.75 | 0.00 | 1.831 | 9.23 | 0.22 | 2.7 | 97.3 | 0.0 | 0.26 | 0.91 | 0.60 | 0.85 | 2.99 | 76521 | 4837 | 20 | 0 | 22 | 0 | 38390 | logfile |