Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8E44	27879	2023-08-13	2022-08-17	2.53	3.06	2.75	2.9	0.005	0.41	0.0	0.04	12.36	0.02	1.946	2.19	0.11	4.6	95.4	0.0	0.86	0.73	0.91	4.75	2.9	0.007	0.63	0.0	0.05	13.74	0.01	1.918	3.70	0.96	5.2	94.7	0.1	-0.15	0.87	0.73	0.92	5.15	115856	1179	11	3016	1	0	41883	logfile
✔	8E43	27878	2023-08-13	2022-08-17	2.09	2.88	2.49	2.6	0.006	0.57	0.0	0.03	12.64	0.02	1.945	2.00	1.06	4.9	94.8	0.3	-2.82	0.73	0.90	5.55	2.6	0.005	0.59	0.0	0.04	13.79	0.01	1.920	3.53	1.17	5.8	93.7	0.4	-0.22	0.38	0.72	0.91	5.20	115905	1179	11	3015	1	0	41874	logfile
✔	8E35	27857	2023-08-13	2022-08-16	2.27	2.92	2.48	2.8	0.009	0.45	0.0	0.03	12.21	0.02	2.028	1.04	0.00	4.6	95.4	0.0	0.37	0.75	0.86	3.34	2.7	0.004	0.60	0.0	0.04	13.40	0.01	1.960	1.76	0.53	5.6	94.4	0.0	-0.52	0.64	0.71	0.89	5.15	115840	1179	11	3016	1	1	41853	logfile
✔	8E32	27854	2023-08-13	2022-08-16	2.35	2.96	2.64	2.8	0.006	0.51	0.0	0.03	12.53	0.02	2.005	1.20	0.74	4.6	95.4	0.0	0.03	0.74	0.91	5.35	2.8	0.005	0.63	0.0	0.04	13.70	0.01	1.945	1.79	1.38	5.5	94.5	0.0	-0.67	0.25	0.70	0.90	5.44	115899	1179	11	3016	2	1	41852	logfile
✔	8E41	27876	2023-08-13	2022-08-17	2.13	2.86	2.57	2.6	0.005	0.38	1.0	0.02	12.72	0.02	1.983	1.89	0.85	5.2	94.8	0.0	0.82	0.73	0.90	5.26	2.6	0.005	0.58	1.0	0.04	13.77	0.01	1.985	3.39	1.17	5.5	94.4	0.1	0.23	0.24	0.73	0.91	5.26	115744	1186	12	3016	1	0	41833	logfile
✔	8E45	27880	2023-08-13	2022-08-17	2.3	2.93	2.71	2.8	0.005	0.39	0.0	0.03	12.39	0.02	1.957	1.35	0.74	4.5	95.4	0.2	0.33	0.71	0.90	5.24	2.8	0.005	0.62	0.0	0.04	13.83	0.01	1.895	2.05	1.38	5.8	93.9	0.3	-0.43	0.59	0.69	0.90	5.62	115749	1179	11	3015	1	0	41831	logfile
✔	8E33	27855	2023-08-13	2022-08-16	2.23	2.91	2.58	2.7	0.006	0.50	0.0	0.04	12.84	0.02	1.965	2.00	0.53	4.6	95.4	0.0	0.48	0.70	0.90	5.42	2.7	0.004	0.58	0.0	0.03	13.61	0.01	1.956	3.48	1.17	6.0	94.0	0.0	0.12	0.21	0.69	0.89	5.42	115769	1179	11	3015	1	1	41830	logfile
✔	8E30	27852	2023-08-13	2022-08-16	1.91	2.70	2.42	2.5	0.006	0.58	0.0	0.04	13.04	0.02	1.967	2.02	0.64	5.3	94.5	0.2	0.82	0.74	0.91	5.44	2.5	0.004	0.64	0.0	0.05	13.74	0.01	1.988	3.63	1.06	5.8	94.0	0.3	0.30	1.19	0.73	0.91	5.81	115737	1179	11	3016	1	0	41820	logfile
✔	8E3M	27868	2023-08-13	2022-08-17	2.25	2.92	2.58	2.7	0.005	0.42	0.0	0.07	13.03	0.02	1.973	2.01	1.27	4.0	96.0	0.0	0.83	0.71	0.91	5.18	2.7	0.004	0.61	0.0	0.04	14.11	0.01	1.960	3.50	1.49	5.2	94.7	0.2	0.15	0.25	0.69	0.90	5.49	115715	1179	11	3016	1	0	41815	logfile
✔	8E42	27877	2023-08-13	2022-08-17	2.29	2.95	2.61	2.7	0.005	0.38	0.0	0.07	12.94	0.02	1.931	1.94	0.53	4.0	96.0	0.0	0.92	0.73	0.91	4.67	2.7	0.005	0.61	0.0	0.04	14.07	0.01	1.770	3.67	0.53	5.3	94.7	0.0	0.08	0.29	0.71	0.91	5.08	115718	1179	11	3016	2	0	41815	logfile
✔	8E36	27858	2023-08-13	2022-08-16	2.38	3.00	2.65	2.8	0.006	0.57	0.0	0.02	13.01	0.02	1.934	2.28	0.32	4.2	95.8	0.0	1.12	0.72	0.90	4.41	2.8	0.006	0.60	0.0	0.04	14.06	0.01	1.910	4.04	0.85	5.1	94.8	0.1	0.08	0.87	0.70	0.89	4.95	115712	1179	11	3015	1	0	41809	logfile
✔	8E3o	27869	2023-08-13	2022-08-17	1.99	2.75	2.52	2.6	0.006	0.42	0.0	0.05	12.65	0.02	1.955	2.37	0.74	4.6	95.1	0.3	-2.75	0.70	0.88	5.93	2.5	0.005	0.61	0.0	0.04	13.84	0.01	1.944	4.19	1.49	5.5	94.3	0.2	0.06	1.00	0.69	0.88	5.88	115702	1179	11	3015	2	0	41809	logfile
✔	8E46	27881	2023-08-13	2022-08-17	2.32	2.94	2.69	2.8	0.006	0.41	0.0	0.08	12.41	0.02	2.015	1.38	0.53	5.1	94.8	0.1	-0.35	0.70	0.90	5.69	2.8	0.005	0.65	0.0	0.04	13.80	0.01	1.913	2.00	1.27	5.9	93.8	0.3	-0.56	0.79	0.69	0.90	5.87	115754	1179	11	3015	1	0	41809	logfile
✔	5JZW	8188	2023-08-20	2016-05-17	4.46	4.55	—	4.5	0.015	1.85	0.0	0.09	10.60	0.02	1.421	10.14	0.00	10.6	83.4	5.9	-2.90	0.71	0.72	—	4.5	0.005	0.76	0.0	0.04	13.23	0.01	1.953	17.63	0.02	12.6	86.7	0.7	-2.24	1.26	0.75	0.79	—	83419	5474	14	0	0	0	40509	logfile
✔	5oDV	3785	2023-08-20	2017-07-06	4.0	4.43	4.14	4.4	0.008	0.80	0.0	0.05	10.27	0.01	1.941	6.34	0.00	13.2	86.8	0.0	-4.48	0.50	0.73	—	4.4	0.003	0.61	0.0	0.04	16.12	0.00	1.979	7.84	0.32	5.5	94.5	0.0	-1.95	1.13	0.53	0.81	—	82656	4968	48	120	0	0	40368	logfile
✔	8FWD	29502	2023-08-20	2023-01-20	3.67	4.15	3.98	4.1	0.003	0.52	0.0	0.03	12.69	0.00	2.375	1.50	0.05	0.8	99.2	0.0	1.38	0.75	0.78	1.41	4.1	0.004	0.54	0.0	0.03	15.35	0.00	2.122	6.56	0.41	2.1	97.9	0.0	3.07	0.78	0.74	0.78	1.61	83280	5736	48	0	0	0	40200	logfile
✔	5L4K	4002	2023-08-19	2016-05-25	3.9	4.00	—	4.2	0.007	0.85	3.0	0.05	16.12	0.01	1.808	5.03	3.82	11.8	85.0	3.2	-6.15	0.34	0.64	0.39	4.0	0.004	0.79	0.0	0.04	17.43	0.01	1.906	18.52	0.60	9.2	90.4	0.5	-1.87	1.81	0.37	0.70	0.35	79649	5000	12	0	0	0	39990	logfile
✔	6TE0	10473	2023-08-19	2019-11-10	3.92	3.97	3.90	3.8	0.007	0.81	0.0	0.05	11.47	0.01	1.432	3.80	0.00	4.0	95.9	0.0	-3.76	0.80	0.81	2.25	3.8	0.003	0.59	0.0	0.04	14.19	0.00	1.737	11.29	0.10	4.9	95.1	0.0	-0.65	0.87	0.80	0.82	1.98	79188	5136	29	0	11	0	39835	logfile
✔	8B0G	15780	2023-08-19	2022-09-07	3.3	3.50	3.22	3.1	0.009	0.80	0.0	0.07	14.55	0.01	1.687	5.69	0.34	5.2	94.8	0.0	-0.94	0.84	0.81	2.69	3.1	0.006	0.64	0.0	0.05	14.55	0.00	1.916	7.41	0.20	5.5	94.5	0.0	-0.45	0.86	0.86	0.86	2.61	79270	5113	15	0	10	0	38789	logfile
✔	7UiZ	26558	2023-08-19	2022-03-29	3.24	3.45	—	3.4	0.004	0.75	0.0	0.05	13.43	0.00	2.014	2.79	0.00	0.1	99.9	0.0	-1.03	0.60	0.81	2.98	3.4	0.003	0.58	0.0	0.04	16.75	0.00	1.831	9.23	0.22	2.7	97.3	0.0	0.26	0.91	0.60	0.85	2.99	76521	4837	20	0	22	0	38390	logfile

• ← previous
• Page 5 of 542
• next →